Random Forest Algorithm Improves Detection of Physiological Activity Embedded within Reflectance Spectra Using Stomatal Conductance as a Test Case

Salinity-specific stomatal conductance model parameters are reduced by stomatal saturation conductance and area via leaf nitrogen

Modeling stomatal behavior is necessary for accurate stomatal simulation and predicting the terrestrial water‑carbon cycle. Although the Ball-Berry and Medlyn stomatal conductance (g_s) models have been widely used, variations and the drivers of their key slope parameters (m and g₁) remain poorly understood under salinity stress. We measured leaf gas exchange, physiological and biochemical traits, soil water content and electrical conductivity of saturation extract (EC_e), and fitted slope parameters of two genotypes of maize growing in two water and two salinity levels. We found m was different between the genotypes, but no difference in g₁. Salinity stress reduced m and g₁, saturated stomatal conductance (g_sat), the fraction of leaf epidermis area allocation to stomata (f_s), and leaf nitrogen (N) content, and increased EC_e, but no marked decrease in slope parameters under drought. Both m and g₁ were positively correlated with g_sat, f_s, and leaf N content, and negatively correlated with EC_e in the same fashion among the two genotypes. Salinity stress altered m and g₁ by modulating g_sat and f_s via leaf N content. The prediction accuracy of g_s was improved using salinity-specific slope parameters, with root mean square error (RMSE) being decreased from 0.056 to 0.046 and 0.066 to 0.025 mol m^-2 s^-1 for the Ball-Berry and Medlyn models, respectively. This study provides a modeling approach to improving the simulation of stomatal conductance under salinity.

Exploring plant responses to abiotic stress by contrasting spectral signature changes

In this study, daily changes over a short period and diurnal progression of spectral reflectance at the leaf level were used to identify spring wheat genotypes (Triticum aestivum L.) susceptible to adverse conditions. Four genotypes were grown in pots experiments under semi-controlled conditions in Chile and Spain. Three treatments were applied: i) control (C), ii) water stress (WS), and iii) combined water and heat shock (WS+T). Spectral reflectance, gas exchange and chlorophyll fluorescence measurements were performed on flag leaves for three consecutive days at anthesis. High canopy temperature ( H _CT ) genotypes showed less variability in their mean spectral reflectance signature and chlorophyll fluorescence, which was related to weaker responses to environmental fluctuations. While low canopy temperature ( L _CT ) genotypes showed greater variability. The genotypes spectral signature changes, in accordance with environmental fluctuation, were associated with variations in their stomatal conductance under both stress conditions (WS and WS+T); L _CT genotypes showed an anisohydric response compared that of H _CT , which was isohydric. This approach could be used in breeding programs for screening a large number of genotypes through proximal or remote sensing tools and be a novel but simple way to identify groups of genotypes with contrasting performances.

Estimation of Maize Foliar Temperature and Stomatal Conductance as Indicators of Water Stress Based on Optical and Thermal Imagery Acquired Using an Unmanned Aerial Vehicle (UAV) Platform

Climatic variability and extreme weather events impact agricultural production, especially in sub-Saharan smallholder cropping systems, which are commonly rainfed. Hence, the development of early warning systems regarding moisture availability can facilitate planning, mitigate losses and optimise yields through moisture augmentation. Precision agricultural practices, facilitated by unmanned aerial vehicles (UAVs) with very high-resolution cameras, are useful for monitoring farm-scale dynamics at near-real-time and have become an important agricultural management tool. Considering these developments, we evaluated the utility of optical and thermal infrared UAV imagery, in combination with a random forest machine-learning algorithm, to estimate the maize foliar temperature and stomatal conductance as indicators of potential crop water stress and moisture content over the entire phenological cycle. The results illustrated that the thermal infrared waveband was the most influential variable during vegetative growth stages, whereas the red-edge and near-infrared derived vegetation indices were fundamental during the reproductive growth stages for both temperature and stomatal conductance. The results also suggested mild water stress during vegetative growth stages and after a hailstorm during the mid-reproductive stage. Furthermore, the random forest model optimally estimated the maize crop temperature and stomatal conductance over the various phenological stages. Specifically, maize foliar temperature was best predicted during the mid-vegetative growth stage and stomatal conductance was best predicted during the early reproductive growth stage. Resultant maps of the modelled maize growth stages captured the spatial heterogeneity of maize foliar temperature and stomatal conductance within the maize field. Overall, the findings of the study demonstrated that the use of UAV optical and thermal imagery, in concert with prediction-based machine learning, is a useful tool, available to smallholder farmers to help them make informed management decisions that include the optimal implementation of irrigation schedules.

Estimating peanut and soybean photosynthetic traits using leaf spectral reflectance and advance regression models

MAIN CONCLUSION

By combining hyperspectral signatures of peanut and soybean, we predicted Vcmax and Jmax with 70 and 50% accuracy. The PLS was the model that better predicted these photosynthetic parameters. One proposed key strategy for increasing potential crop stability and yield centers on exploitation of genotypic variability in photosynthetic capacity through precise high-throughput phenotyping techniques. Photosynthetic parameters, such as the maximum rate of Rubisco catalyzed carboxylation (Vc,max) and maximum electron transport rate supporting RuBP regeneration (Jmax), have been identified as key targets for improvement. The primary techniques for measuring these physiological parameters are very time-consuming. However, these parameters could be estimated using rapid and non-destructive leaf spectroscopy techniques. This study compared four different advanced regression models (PLS, BR, ARDR, and LASSO) to estimate Vc,max and Jmax based on leaf reflectance spectra measured with an ASD FieldSpec4. Two leguminous species were tested under different controlled environmental conditions: (1) peanut under different water regimes at normal atmospheric conditions and (2) soybean under high [CO2] and high night temperature. Model sensitivities were assessed for each crop and treatment separately and in combination to identify strengths and weaknesses of each modeling approach. Regardless of regression model, robust predictions were achieved for Vc,max (R2 = 0.70) and Jmax (R2 = 0.50). Field spectroscopy shows promising results for estimating spatial and temporal variations in photosynthetic capacity based on leaf and canopy spectral properties.

Drone-Based Hyperspectral and Thermal Imagery for Quantifying Upland Rice Productivity and Water Use Efficiency after Biochar Application

Miniature hyperspectral and thermal cameras onboard lightweight unmanned aerial vehicles (UAV) bring new opportunities for monitoring land surface variables at unprecedented fine spatial resolution with acceptable accuracy. This research applies hyperspectral and thermal imagery from a drone to quantify upland rice productivity and water use efficiency (WUE) after biochar application in Costa Rica. The field flights were conducted over two experimental groups with bamboo biochar (BC1) and sugarcane biochar (BC2) amendments and one control (C) group without biochar application. Rice canopy biophysical variables were estimated by inverting a canopy radiative transfer model on hyperspectral reflectance. Variations in gross primary productivity (GPP) and WUE across treatments were estimated using light-use efficiency and WUE models respectively from the normalized difference vegetation index (NDVI), canopy chlorophyll content (CCC), and evapotranspiration rate. We found that GPP was increased by 41.9 ± 3.4% in BC1 and 17.5 ± 3.4% in BC2 versus C, which may be explained by higher soil moisture after biochar application, and consequently significantly higher WUEs by 40.8 ± 3.5% in BC1 and 13.4 ± 3.5% in BC2 compared to C. This study demonstrated the use of hyperspectral and thermal imagery from a drone to quantify biochar effects on dry cropland by integrating ground measurements and physical models.

Predicting Tree Sap Flux and Stomatal Conductance from Drone-Recorded Surface Temperatures in a Mixed Agroforestry System—A Machine Learning Approach

Plant transpiration is a key element in the hydrological cycle. Widely used methods for its assessment comprise sap flux techniques for whole-plant transpiration and porometry for leaf stomatal conductance. Recently emerging approaches based on surface temperatures and a wide range of machine learning techniques offer new possibilities to quantify transpiration. The focus of this study was to predict sap flux and leaf stomatal conductance based on drone-recorded and meteorological data and compare these predictions with in-situ measured transpiration. To build the prediction models, we applied classical statistical approaches and machine learning algorithms. The field work was conducted in an oil palm agroforest in lowland Sumatra. Random forest predictions yielded the highest congruence with measured sap flux (r2 = 0.87 for trees and r2 = 0.58 for palms) and confidence intervals for intercept and slope of a Passing-Bablok regression suggest interchangeability of the methods. Differences in model performance are indicated when predicting different tree species. Predictions for stomatal conductance were less congruent for all prediction methods, likely due to spatial and temporal offsets of the measurements. Overall, the applied drone and modelling scheme predicts whole-plant transpiration with high accuracy. We conclude that there is large potential in machine learning approaches for ecological applications such as predicting transpiration.

Detection of Defoliation Injury in Peanut with Hyperspectral Proximal Remote Sensing

Remote sensing can be applied to optimize efficiency in pest detection, as an insect sampling tool. This efficiency can result in more precise recommendations for decision making in pest management. Pest detection with remote sensing is often feasible because plant biotic stress caused by herbivory triggers a defensive physiological response in plants, which generally results in changes to leaf reflectance. Therefore, the key objective of this study was to use hyperspectral proximal remote sensing and gas exchange parameters to characterize peanut leaf responses to herbivory by Stegasta bosqueella (Lepidoptera: Gelechiidae) and Spodoptera cosmioides (Lepidoptera: Noctuidae), two major pests in South American peanut (Arachis hypogaea) production. The experiment was conducted in a randomized complete block design with a 2 × 3 factorial scheme (two lepidopterous species and 3 categories of injury). The injury treatments were: (1) natural infestation by third instars of S. bosqueella, (2) natural infestation by third instars of S. cosmioides, and (3) simulation of injury with scissors to mimic larval injury. We verified that peanut leaf reflectance is different between herbivory by the two larval species, but similar among real and simulated defoliation. Similarly, we observed differences in photosynthetic rate, stomatal conductance, transpiration, and photosynthetic water use efficiency only between species but not between real and simulated larval defoliation. Our results provide information that is essential for the development of sampling and economic thresholds of S. bosqueella and S. cosmioides on the peanut.