Use of Variogram Parameters in Analysis of Hyperspectral Imaging Data Acquired from Dual-Stressed Crop Leaves

SEM/EDX and Raman chemical imaging of pharmaceutical tablets: A comparison of tablet surface preparation and analysis methods

A better understanding of a pharmaceutical tablet's microstructure has the potential to unlock the black box between material attributes, process parameters and the critical quality attributes. Microstructure determination requires measuring the spatial-, particle size-distributions (absolute and relative) of the ingredients, and the void space, which is the overt goal of chemical Imaging (CI). Reliable quantitative results can be obtained by imaging multiple layers per tablet, with each layer having a minimal surface roughness. This study utilized scanning electron microscopy/energy dispersive X-ray spectroscopy (SEM/EDX) and Raman chemical imaging (RCI) to provide a comparative discussion of results obtained when determining the microstructure of commercial zinc sulfate tablets, using three methods of tablet surface preparation: scoring & hand-fracturing, microtoming, and grating. A description of the working principles of the measurement and surface preparation methods is followed by a comparison of microstructure (particle size distribution and homogeneity of distribution) using chemical images. A comparison of the general advantages and disadvantages of SEM/EDX and RCI and the common errors in analyzing microstructure are also discussed. The results indicate that in addition to selecting the correct tablet surface preparation method, chemical imaging method, and the subsequent microstructural analyses method, correct problem formulation is also critical.

Drought Stress Detection in Juvenile Oilseed Rape Using Hyperspectral Imaging with a Focus on Spectra Variability

Hyperspectral imaging (HSI) has been gaining recognition as a promising proximal and remote sensing technique for crop drought stress detection. A modelling approach accounting for the treatment effects on the stress indicators’ standard deviations was applied to proximal images of oilseed rape—a crop subjected to various HSI studies, with the exception of drought. The aim of the present study was to determine the spectral responses of two cultivars, ‘Cadeli’ and ‘Viking’, representing distinctive water management strategies, to three types of watering regimes. Hyperspectral data cubes were acquired at the leaf level using a 2D frame camera. The influence of the experimental factors on the extent of leaf discolorations, vegetation index values, and principal component scores was investigated using Bayesian linear models. Clear treatment effects were obtained primarily for the vegetation indexes with respect to the watering regimes. The mean values of RGI, MTCI, RNDVI, and GI responded to the difference between the well-watered and water-deprived plants. The RGI index excelled among them in terms of effect strengths, which amounted to −0.96[−2.21,0.21] and −0.71[−1.97,0.49] units for each cultivar. A consistent increase in the multiple index standard deviations, especially RGI, PSRI, TCARI, and TCARI/OSAVI, was associated with worsening of the hydric regime. These increases were captured not only for the dry treatment but also for the plants subjected to regeneration after a drought episode, particularly by PSRI (a multiplicative effect of 0.33[0.16,0.68] for ‘Cadeli’). This result suggests a higher sensitivity of the vegetation index variability measures relative to the means in the context of the oilseed rape drought stress diagnosis and justifies the application of HSI to capture these effects. RGI is an index deserving additional scrutiny in future studies, as both its mean and standard deviation were affected by the watering regimes.

Drones: Innovative Technology for Use in Precision Pest Management

Arthropod pest outbreaks are unpredictable and not uniformly distributed within fields. Early outbreak detection and treatment application are inherent to effective pest management, allowing management decisions to be implemented before pests are well-established and crop losses accrue. Pest monitoring is time-consuming and may be hampered by lack of reliable or cost-effective sampling techniques. Thus, we argue that an important research challenge associated with enhanced sustainability of pest management in modern agriculture is developing and promoting improved crop monitoring procedures. Biotic stress, such as herbivory by arthropod pests, elicits physiological defense responses in plants, leading to changes in leaf reflectance. Advanced imaging technologies can detect such changes, and can, therefore, be used as noninvasive crop monitoring methods. Furthermore, novel methods of treatment precision application are required. Both sensing and actuation technologies can be mounted on equipment moving through fields (e.g., irrigation equipment), on (un)manned driving vehicles, and on small drones. In this review, we focus specifically on use of small unmanned aerial robots, or small drones, in agricultural systems. Acquired and processed canopy reflectance data obtained with sensing drones could potentially be transmitted as a digital map to guide a second type of drone, actuation drones, to deliver solutions to the identified pest hotspots, such as precision releases of natural enemies and/or precision-sprays of pesticides. We emphasize how sustainable pest management in 21st-century agriculture will depend heavily on novel technologies, and how this trend will lead to a growing need for multi-disciplinary research collaborations between agronomists, ecologists, software programmers, and engineers.

Landscape-Based Assessment of Urban Resilience and Its Evolution: A Case Study of the Central City of Shenyang

Urban resilience is increasingly considered a useful approach to accommodate uncertainties while achieving sustainability in urban systems, especially in the context of rapid urbanization and global environmental change. However, current research on the quantitative assessment of urban resilience is limited. This study introduces four proxies of urban resilience, i.e., diversity, connectivity, decentralization, and self-sufficiency, and the perspective of the urban landscape for the measurement of urban resilience and further guidance on planning practices by establishing connections between resilience potential and landscape characteristics. Using multi-source data and employing landscape-based analysis methods, urban resilience is investigated from 1995 to 2015 in the central city of Shenyang. The results indicate that the composition and configuration of the urban landscape changed significantly during this period, which had a great influence on urban resilience. The temporal and spatial evolution of urban resilience showed obviously directional preferences and an evident distance effect. Overall, the resilience level increased slightly, while the internal differences experienced a declining trend. The four characteristics can be deployed as practical principles to shape urban resilience. The adjustment and trade-offs of these aspects to enhance responsive structures and simultaneously maintain sustainable ecosystem services can be effective ways to realize long-term resilience.

Proximal Remote Sensing to Non-destructively Detect and Diagnose Physiological Responses by Host Insect Larvae to Parasitism

As part of identifying and characterizing physiological responses and adaptations by insects, it is paramount to develop non-destructive techniques to monitor individual insects over time. Such techniques can be used to optimize the timing of when in-depth (i.e., destructive sampling of insect tissue) physiological or molecular analyses should be deployed. In this article, we present evidence that hyperspectral proximal remote sensing can be used effectively in studies of host responses to parasitism. We present time series body reflectance data acquired from individual soybean loopers (Chrysodeixis includens) without parasitism (control) or parasitized by one of two species of parasitic wasps with markedly different life histories: Microplitis demolitor, a solitary larval koinobiont endoparasitoid and Copidosoma floridanum, a polyembryonic (gregarious) egg-larval koinobiont endoparasitoid. Despite considerable temporal variation in reflectance data 1-9 days post-parasitism, the two parasitoids caused uniquely different host body reflectance responses. Based on reflectance data acquired 3-5 days post-parasitism, all three treatments (control larvae, and those parasitized by either M. demolitor or C. floridanum) could be classified with >85 accuracy. We suggest that hyperspectral proximal imaging technologies represent an important frontier in insect physiology, as they are non-invasive and can be used to account for important time scale factors, such as: minutes of exposure or acclimation to abiotic factors, circadian rhythms, and seasonal effects. Although this study is based on data from a host-parasitoid system, results may be of broad relevance to insect physiologists. Described approaches provide a non-invasive and rapid method that can provide insights into when to destructively sample tissue for more detailed mechanistic studies of physiological responses to stressors and environmental conditions.

The potential and prospects of proximal remote sensing of arthropod pests

Bench-top or proximal remote sensing applications are widely used as part of quality control and machine vision systems in commercial operations. In addition, these technologies are becoming increasingly important in insect systematics and studies of insect physiology and pest management. This paper provides a review and discussion of how proximal remote sensing may contribute valuable quantitative information regarding identification of species, assessment of insect responses to insecticides, insect host responses to parasitoids and performance of biological control agents. The future role of proximal remote sensing is discussed as an exciting path for novel paths of multidisciplinary research among entomologists and scientists from a wide range of other disciplines, including image processing engineers, medical engineers, research pharmacists and computer scientists. © 2015 Society of Chemical Industry.

Remote Sensing and Reflectance Profiling in Entomology

Remote sensing describes the characterization of the status of objects and/or the classification of their identity based on a combination of spectral features extracted from reflectance or transmission profiles of radiometric energy. Remote sensing can be benchtop based, and therefore acquired at a high spatial resolution, or airborne at lower spatial resolution to cover large areas. Despite important challenges, airborne remote sensing technologies will undoubtedly be of major importance in optimized management of agricultural systems in the twenty-first century. Benchtop remote sensing applications are becoming important in insect systematics and in phenomics studies of insect behavior and physiology. This review highlights how remote sensing influences entomological research by enabling scientists to nondestructively monitor how individual insects respond to treatments and ambient conditions. Furthermore, novel remote sensing technologies are creating intriguing interdisciplinary bridges between entomology and disciplines such as informatics and electrical engineering.

Leaf reflectance variation along a vertical crown gradient of two deciduous tree species in a Belgian industrial habitat

The reflectometry of leaf asymmetry is a novel approach in the bio-monitoring of tree health in urban or industrial habitats. Leaf asymmetry responds to the degree of environmental pollution and reflects structural changes in a leaf due to environmental pollution. This paper describes the boundary conditions to scale up from leaf to canopy level reflectance, by describing the variability of adaxial and abaxial leaf reflectance, hence leaf asymmetry, along the crown height gradients of two tree species. Our findings open a research pathway towards bio-monitoring based on the airborne remote sensing of tree canopies and their leaf asymmetric properties.

Development of "best practices" for sampling of an important surface-dwelling soil mite in pastoral landscapes

In this study, we analyzed 1145 vacuum samples of redlegged earth mites (RLEM) [Halotydeus destructor (Tucker) (Acari: Penthaleidae)] from 18 sampling events at six locations in pastoral landscapes of Western Australia during three growing seasons (2012-2014) (total of 228,299 RLEM individuals). The specific objectives were to determine: (1) presence/absence effects of a range of vegetation characteristics, (2) possible factors influencing RLEM sampling performance during the course of the season and day, (3) effects of size of area sampled and duration of sampling, (4) the spatial structure of RLEM counts in uniform pastoral vegetation, and (5) develop "best practices" regarding field-based vacuum sampling of surface dwelling soil mites in pastoral landscapes. We found that sampling of completely bare ground will lead to very low RLEM counts but spots with sparse vegetation (presence of bare ground) probably increases the presence of microhabitats for mites to shelter in and therefore lead to higher RLEM counts. RLEM counts were positively associated with the height of vegetation, at least up to about 15 cm in height. In early season (May-August), highest RLEM counts will be obtained in the afternoon hours (2-4 pm), whereas in late season sampling (August-November), highest RLEM counts will be obtained around noon. Higher RLEM counts should be expected from spots with grazed/mowed vegetation including cape weed and without presence of grasses and stubble. Variogram analyses of high-resolution data sets suggested that considerable range of spatial autocorrelation should be expected from fields with fairly uniform vegetation, especially if RLEM population densities are high. We are therefore recommending that samples are collected at least 30 m apart, if the objective is to obtain independent (spatially non-correlated) counts. The results from this study may be used to develop effective sampling protocols deployed in field ecology studies of soil surface dwelling mesofauna in pastoral landscapes and other ecosystems.

Importance of spatial and spectral data reduction in the detection of internal defects in food products

Despite the importance of data reduction as part of the processing of reflection-based classifications, this study represents one of the first in which the effects of both spatial and spectral data reductions on classification accuracies are quantified. Furthermore, the effects of approaches to data reduction were quantified for two separate classification methods, linear discriminant analysis (LDA) and support vector machine (SVM). As the model dataset, reflection data were acquired using a hyperspectral camera in 230 spectral channels from 401 to 879 nm (spectral resolution of 2.1 nm) from field pea (Pisum sativum) samples with and without internal pea weevil (Bruchus pisorum) infestation. We deployed five levels of spatial data reduction (binning) and eight levels of spectral data reduction (40 datasets). Forward stepwise LDA was used to select and include only spectral channels contributing the most to the separation of pixels from non-infested and infested field peas. Classification accuracies obtained with LDA and SVM were based on the classification of independent validation datasets. Overall, SVMs had significantly higher classification accuracies than LDAs (P < 0.01). There was a negative association between pixel resolution and classification accuracy, while spectral binning equivalent to up to 98% data reduction had negligible effect on classification accuracies. This study supports the potential use of reflection-based technologies in the quality control of food products with internal defects, and it highlights that spatial and spectral data reductions can (1) improve classification accuracies, (2) vastly decrease computer constraints, and (3) reduce analytical concerns associated with classifications of large and high-dimensional datasets.

Reflectance-based identification of parasitized host eggs and adult Trichogramma specimens

A wide range of imaging and spectroscopy technologies is used in medical diagnostics, quality control in production systems, military applications, stress detection in agriculture, and ecological studies of both terrestrial and aquatic organisms. In this study, we hypothesized that reflectance profiling can be used to successfully classify animals that are otherwise very challenging to classify. We acquired hyperspectral images from adult specimens of the egg parasitoid genus Trichogramma (T. galloi, T. pretiosum and T. atopovirilia), which are ~1.0 mm in length. We also acquired hyperspectral images from host eggs containing developing Trichogramma instar and pupae. These obligate egg endoparasitoid species are commercially available as natural enemies of lepidopteran pests in food production systems. Because of their minute size and physical resemblance, classification is time consuming and requires a high level of technical experience. The classification of reflectance profiles was based on a combination of average reflectance and variogram parameters (describing the spatial structure of reflectance data) of reflectance values in individual spectral bands. Although variogram parameters (variogram analysis) are commonly used in large-scale spatial research (i.e. geoscience and landscape ecology), they have only recently been used in classification of high-resolution hyperspectral imaging data. The classification model of parasitized host eggs was equally successful for each of the three species and was successfully validated with independent data sets (>90% classification accuracy). The classification model of adult specimens accurately separated T. atopovirilia from the other two species, but specimens of T. galloi and T. pretiosum could not be accurately separated. Interestingly, molecular-based classification (using the DNA sequence of the internally transcribed spacer ITS2) of Trichogramma species published elsewhere corroborates the classification, as T. galloi and T. pretiosum are closely related and comparatively distant from T. atopovirilia. Our results emphasize the importance of using high-spectral and high-spatial resolution data in the classification of organism relatedness, and hyperspectral imaging may be of relevance to a wide range of commercial (i.e. producers of biocontrol agents), taxonomic and evolutionary research applications.

Agricultural case studies of classification accuracy, spectral resolution, and model over-fitting

This paper describes the relationship between spectral resolution and classification accuracy in analyses of hyperspectral imaging data acquired from crop leaves. The main scope is to discuss and reduce the risk of model over-fitting. Over-fitting of a classification model occurs when too many and/or irrelevant model terms are included (i.e., a large number of spectral bands), and it may lead to low robustness/repeatability when the classification model is applied to independent validation data. We outline a simple way to quantify the level of model over-fitting by comparing the observed classification accuracies with those obtained from explanatory random data. Hyperspectral imaging data were acquired from two crop-insect pest systems: (1) potato psyllid (Bactericera cockerelli) infestations of individual bell pepper plants (Capsicum annuum) with the acquisition of hyperspectral imaging data under controlled-light conditions (data set 1), and (2) sugarcane borer (Diatraea saccharalis) infestations of individual maize plants (Zea mays) with the acquisition of hyperspectral imaging data from the same plants under two markedly different image-acquisition conditions (data sets 2a and b). For each data set, reflectance data were analyzed based on seven spectral resolutions by dividing 160 spectral bands from 405 to 907 nm into 4, 16, 32, 40, 53, 80, or 160 bands. In the two data sets, similar classification results were obtained with spectral resolutions ranging from 3.1 to 12.6 nm. Thus, the size of the initial input data could be reduced fourfold with only a negligible loss of classification accuracy. In the analysis of data set 1, several validation approaches all demonstrated consistently that insect-induced stress could be accurately detected and that therefore there was little indication of model over-fitting. In the analyses of data set 2, inconsistent validation results were obtained and the observed classification accuracy (81.06%) was only a few percentage points above that obtained using random data (66.7-77.4%). Thus, our analysis highlights a potential risk of model over-fitting and emphasizes the importance of testing for this important aspect as part of developing reliable and robust classification models.