Understanding and Enhancing Soil Biological Health: The Solution for Reversing Soil Degradation

Dynamics of micro and macronutrients in a hydroponic nutrient film technique system under lettuce cultivation

While hydroponics is considered an efficient vegetable production system, there is a compelling need to investigate the efficiency of the current generic nutrient dosing recommendation primarily based on electrical conductivity (EC) measurements. Such information is critical to fine-tune and optimize the current hydroponic management practices for improved nutrient uptake efficiency. This study investigated the dynamics of some micro and macronutrients (N, P, Ca, Mg, K, Fe, and Mn) in a recirculating nutrient film technique (NFT) hydroponic system under lettuce cultivation. The research was conducted in an indoor controlled environment growth chamber with lettuce grown in different EC levels (1.2 and 1.6 dS m-1). Each treatment had four hydroponic cultivation units, each one with 24 plants. Nutrient solution and tissue samples were collected two to three times per week. Nutrient dynamics, including nutrient uptake efficiencies and environmental losses, were calculated using a mass balance approach. The effects of EC level on fresh and dry lettuce biomass and nutrient uptake were insignificant. Observed variations in nutrient solution composition during lettuce cultivation included the almost complete removal of ammonia nitrogen, nitrate decreases towards the end of the experiment, consistent increases in aqueous Ca concentration, and corresponding decreases in K and Mn. Average N losses ranged between 27 and 40 %, presumably through denitrification, while 10-14 % of N was assimilated into the plant biomass. The remaining N in the recirculating nutrient solution was estimated to be between 50 and 59 %. The average P loss was 11-35 %, likely due to precipitation, while 52-77 % remained in the nutrient solution. Nutrient uptake efficiencies averaged 19-31 % K, 12-21 % P, 9-16 % Mn, 4-6 % Ca, 3-4 % Mg, and 2-4 % Fe. These results suggest that elevated nutrient concentrations in recirculating nutrient solutions led to losses and underutilization. Findings from this study provide a comprehensive dataset critical to improving hydroponic nutrient management beyond N and P. Hydroponic nutrient management should target providing essential nutrients needed by plants at the correct proportions considering the plant growth stage.

Fungal diversity in the soil Mycobiome: Implications for ONE health

Today, over 300 million individuals worldwide are afflicted by severe fungal infections, many of whom will perish. Fungi, as a result of their plastic genomes have the ability to adapt to new environments and extreme conditions as a consequence of globalization, including urbanization, agricultural intensification, and, notably, climate change. Soils and the impact of these anthropogenic environmental factors can be the source of pathogenic and non-pathogenic fungi and subsequent fungal threats to public health. This underscores the growing understanding that not only is fungal diversity in the soil mycobiome a critical component of a functioning ecosystem, but also that soil microbial communities can significantly contribute to plant, animal, and human health, as underscored by the One Health concept. Collectively, this stresses the importance of investigating the soil microbiome in order to gain a deeper understanding of soil fungal ecology and its interplay with the rhizosphere microbiome, which carries significant implications for human health, animal health and environmental health.

Response of soil erosion resistance to straw incorporation amount in the black soil region of Northeast China

Straw incorporation has been considered as an effective environmental management application to improve soil erosion resistance (SER) and organic carbon sequestration. SER is useful to evaluate soil erosion subjected to concentrated flow. Nevertheless, few studies have been performed to examine how SER varied with the amount of straw incorporation on sloping croplands in high latitude and cool regions. In the current study, the fixed bed scouring tests were conducted in a large hydraulic flume using undisturbed soil samples taken from Hebei small watershed in the black soil region of Northeast China. The response of SER to different straw incorporation amounts (0, 1.125, 2.25, 4.5, 6.75, 9.0 and 13.5 t ha-1) was quantified after three months of straw decomposition. The major influencing factors and the corresponding mechanisms were determined. The findings demonstrated that rill erodibility firstly decreased exponentially with straw incorporation amount (R2 = 0.93), while it slightly increased when straw incorporation amount was more than 9.0 t ha-1. Critical shear stress firstly increased logarithmically (R2 = 0.90) and then slightly decreased when the amount exceeded 9.0 t ha-1. Compared to the treatment of 0 t ha-1, rill erodibility reduced by 17.0%-92.8% and critical shear stress increased by 59.6%-127.2% across different treatments of straw incorporation. Rill erodibility had significant and negative correlations with soil organic matter content, aggregate stability, cohesion, root mass density, straw mass density and straw decomposition amount. The key mechanisms for promoting SER were derived by the direct and indirect effects of straw incorporation and its decomposition on soil physicochemical properties and crop roots. The amount of 9.0 t ha-1 was recommended as the optimum amount of straw incorporation in croplands in Northeast China. These findings are useful to understand how soil erosion resistance responds to the amount of straw incorporation and make rational environmental management policy for semi-humid and cool regions.

Biochar modulating soil biological health: A review

Biochar can be used for multifunctional applications including the improvement of soil health and carbon storage, remediation of contaminated soil and water resources, mitigation of greenhouse gas emissions and odorous compounds, and feed supplementation to improve animal health. A healthy soil preserves microbial biodiversity that is effective in supressing plant pathogens and pests, recycling nutrients for plant growth, promoting positive symbiotic associations with plant roots, improving soil structure to supply water and nutrients, and ultimately enhancing soil productivity and plant growth. As a soil amendment, biochar assures soil biological health through different processes. First, biochar supports habitats for microorganisms due to its porous nature and by promoting the formation of stable soil micro-aggregates. Biochar also serves as a carbon and nutrient source. Biochar alters soil physical and chemical properties, creating optimum soil conditions for microbial diversity. Biochar can also immobilize soil pollutants and reduce their bioavailability that would otherwise inhibit microbial growth. However, depending on the pyrolysis settings and feedstock resources, biochar can be comprised of contaminants including polycyclic aromatic hydrocarbons and potentially toxic elements that can inhibit microbial activity, thereby impacting soil health.

Climate Change-The Rise of Climate-Resilient Crops

Climate change disrupts food production in many regions of the world. The accompanying extreme weather events, such as droughts, floods, heat waves, and cold snaps, pose threats to crops. The concentration of carbon dioxide also increases in the atmosphere. The United Nations is implementing the climate-smart agriculture initiative to ensure food security. An element of this project involves the breeding of climate-resilient crops or plant cultivars with enhanced resistance to unfavorable environmental conditions. Modern agriculture, which is currently homogeneous, needs to diversify the species and cultivars of cultivated plants. Plant breeding programs should extensively incorporate new molecular technologies, supported by the development of field phenotyping techniques. Breeders should closely cooperate with scientists from various fields of science.

Wooded biocorridors substantially improve soil properties in low-altitude rural benchlands

This study examines soil properties in 30- and 60-year-old agricultural biocorridors and provides a comparative overview with neighbouring farmland. Both mixed and undisturbed soil samples were collected from six farmland/biocorridor study areas to assess a wide spectrum of physical, hydrophysical, chemical and biological soil properties. Biocorridor soils were characterised by higher water retention capacities, porosity, aeration and soil carbon stock, the latter increasing with depth. On the other hand, biocorridor bulk density under forest vegetation cover was lower, indicating progressive soil restoration. Slightly lower soil reactions in biocorridor soils disproved the hypothesis that nutrient-rich soils under biocorridors would form substrates with a high base cation content, leading to soil acidification. Biological activity, expressed through respiration coefficients, was generally low due to unfavourable physical conditions (clayey or silty-clay substrates), with the lowest levels in biocorridors. Nevertheless, biocorridor soil microbiota displayed more effective utilisation of organic matter as a carbon and nitrogen source, with lighter-textured soils tending to show more effective organic matter utilisation after excluding the influence of land use. Our results confirm biocorridors as an important landscape component, contributing to both soil stability and local revitalisation of soil environments and further emphasising their potential as climate-change mitigation tools in their role as carbon sinks.

New approach to soil management focusing on soil health and air quality: one earth one life (critical review)

Soil plays a key role in ecosphere and air quality regulation. Obsolete environmental technologies lead to soil quality loss, air, water, and land systems pollution. Pedosphere and plants are intertwined with the air quality. Ionized O2 is capable to intensify atmosphere turbulence, providing particulate matter (PM2.5) coalescence and dry deposition. Addressing environmental quality, a Biogeosystem Technique (BGT*) heuristic transcendental (nonstandard and not direct imitation of nature) methodology has been developed. A BGT* main focus is an enrichment of Earth's biogeochemical cycles through land use and air cleaning. An intra-soil processing, which provides the soil multilevel architecture, is one of the BGT* ingredients. A next BGT* implementation is intra-soil pulse continuously discrete watering for optimal soil water regime and freshwater saving up to 10-20 times. The BGT* comprises intra-soil dispersed environmentally safe recycling of the PM sediments, heavy metals (HMs) and other pollutants, controlling biofilm-mediated microbial community interactions in the soil. This provides abundant biogeochemical cycle formation and better functioning of the humic substances, biological preparation, and microbial biofilms as a soil-biological starter, ensuring priority plants and trees nutrition, growth and resistance to phytopathogens. A higher underground and aboveground soil biological product increases a reversible C biological sequestration from the atmosphere. An additional light O2 ions photosynthetic production ensures a PM2.5 and PM0.1 coalescence and strengthens an intra-soil transformation of PM sediments into nutrients and improves atmosphere quality. The BGT* provides PM and HMs intra-soil passivation, increases soil biological productivity, stabilizes a climate system of the earth and promotes a green circular economy.

Towards a farmer-feasible soil health assessment that is globally applicable

Globally, agriculture has had a significant and often detrimental impact on soil. The continued capacity of soil to function as a living ecosystem that sustains microbes, plants, and animals (including humans), its metaphorical health, is of vital importance across geographic scales. Healthy soil underpins food production and ecosystem resilience against a changing climate. This paper focuses on assessing soil health, an area of increasing interest for farming communities, researchers, industry and policy-makers. Without accessible and reliable soil assessment, any management and interventions to improve soil health are likely to be sub-optimal. Here we explore available soil health assessments (SHAs) that may be feasible for farmers of varying income levels and suitable for broad geographic application. Whilst there is a range of existing approaches to SHA, we find that no one framework currently meets these broad aims. Firstly, reliance on expensive and logistically complex laboratory methods reduces viability and accessibility for many farmers. Secondly, lack of defined indicator baselines and associated thresholds or gradients for soil health prevents the assessment of soil measurements against achieving optima for a given set of local soil-climate conditions. Since soils vary greatly, these baselines and thresholds must be defined considering the local biogeographic context; it is inappropriate to simply transfer calibrated information between contexts. These shortcomings demand progress towards a feasible, globally applicable and context-relevant SHA framework. The most feasible SHAs we identified were developed locally in conjunction with farmers, who have been repeatedly found to assess the health of their soils accurately, often using relatively simple, observable indications. To progress, we propose assessment of which indicators add information to a SHA in local contexts, with a focus on sufficiency, to reduce data burden. Provision of a standardised protocol for measurement and sampling that considers the reliability and accuracy of different methods would also be extremely valuable. For greatest impact, future work should be taken forward through a cross-industry collaborative approach involving researchers, businesses, policy makers, and, above all, farmers, who are both experts and users.

The shaping of onion seedlings performance through substrate formulation and co-inoculation with beneficial microorganism consortia

Introduction

Smart management in crop cultivation is increasingly supported by application of arbuscular mycorrhizal fungi (AMF) and plant growth-promoting microorganisms (PGPM), which sustain soil fertility and plant performance. The aim of this study was the evaluation of the effects of consortia composed of (Claroideoglomus claroideum BEG96, Claroideoglomus etunicatum BEG92, Funneliformis geosporum BEG199, Funneliformis mosseae BEG 95, and Rhizophagus irregularis BEG140) and PGPM (Azospirillum brasilense - AZ, or Saccharothrix sp. - S) on onion cultivated in growing media with a composition corresponding to a degraded soil.

Methods

Three types of substrate formulations were used, with peat:sand ratios of 50:50, 70:30, 100:0 (v:v). The analysis of substrate parameters crucial for its fertility (pH, salinity, sorption complex capacity, and elements' content) and characteristics reflecting onion seedlings' performance (fresh weight, stress biomarkers, and elements' content) was performed.

Results

AMF colonized onion roots in all treatments, showing increasing potential to form intercellular structures in the substrates rich in organic matter. Additionally, co-inoculation with PGPM microorganisms accelerated arbuscular mycorrhiza establishment. Increased antioxidant activity and glutathione peroxidase (GPOX) activity of onion roots sampled from the formulations composed of peat and sand in the ratio of 100:0, inoculated with AMF+S, and positive correlation between GPOX, fresh weight and antioxidant activity of onion roots reflected the successful induction of plant acclimatization response. Total phenols content was the highest in roots and leaves of onion grown in substrates with 70:30 peat:sand ratio, and, in the case of roots, it was correlated with AMF colonization parameters but not with antioxidant activity.

Discussion

AMF and PGPM efficiency in supporting onion growth should be linked to the increased onion root system capacity in mineral salts absorption, resulting in more efficient aboveground biomass production. AMF and PGPM consortia were effective in releasing minerals to soluble fraction in substrates rich in organic matter, making elements available for uptake by onion root system, though this phenomenon depended on the PGPM species. Microorganism consortia enhanced onion seedlings' performance also in substrates with lower content of organic carbon through plant biofertilization and phytostimulation.

Use of archived data to derive soil health and water quality indicators for monitoring shifts in natural resources

Current gaps impeding researchers from developing a soil and watershed health nexus include design of long-term field-scale experiments and statistical methodologies that link soil health indicators (SHI) with water quality indicators (WQI). Land cover is often used to predict WQI but may not reflect the effects of previous management such as legacy fertilizer applications, disturbance, and shifts in plant populations) and soil texture. Our research objectives were to use nonparametric Spearman rank-order correlations to identify SHI and WQI that were related across the Fort Cobb Reservoir experimental watershed (FCREW); use the resulting rho (r) and p values (P) to explore potential drivers of SHI-WQI relationships, specifically land use, management, and inherent properties (soil texture, aspect, elevation, slope); and interpret findings to make recommendations regarding assessment of the sustainability of land use and management. The SHI values used in the correlation matrix were weighted by soil texture and land management. The SHI that were significantly correlated with one or more WQI were available water capacity (AWC), Mehlich III soil P, and the sand to clay ratio (S:C). Mehlich III soil P was highly correlated with three WQI: total dissolved solids (TDS) (0.80; P < 0.01), electrical conductivity of water (EC-H₂ O) (0.79; P < 0.01), and water nitrates (NO₃ -H₂ O) (0.76; P < 0.01). The correlations verified that soil texture and management jointly influence water quality (WQ), but the size of the soils dataset prohibited determination of the specific processes. Adoption of conservation tillage and grasslands within the FCREW improved WQ such that water samples met the U.S. Environmental Protection Agency (EPA) drinking water standards. Future research should integrate current WQI sampling sites into an edge-of-field design representing all management by soil series combinations within the FCREW.

Microalgae biomass as a renewable biostimulant: meat processing industry effluent treatment, soil health improvement, and plant growth

Microalgae biomass contributes to effluent bioremediation. It is a concentrated source of nutrients and organic carbon, making it a potential alternative as a soil biostimulant. In this context, this study aimed to evaluate the soil application of microalgae biomass produced from the meat processing industry effluent treatment. The biomass was applied dry and as a mixture to demonstrate its potential to increase plant production and soil metabolic functions, analyzed short-term. Doses of 0.25%, 0.5%, 1%, and 2% biomass were applied in soils from (i) Horizon A: taken at a depth between 0 and 10 cm and; (ii) Horizon B: taken at a depth between 20 and 40 cm. Corn growth (Zea Mays L.), basal soil respiration, microbial biomass carbon, total organic carbon, β-glucosidase, acid phosphatase, arylsulfatase, and urease enzymatic activity were evaluated in each sample. It is concluded that applying 2% microalgae biomass led to higher basal soil respiration, microbial biomass carbon, and β-glucosidase, acid phosphatase, arylsulfatase enzymatic activity in both soils. On the other hand, boron may have contributed to urease activity reduction in Soil A. Although 2% biomass led to higher soils characteristics, that dose did not promote higher plant growth. Hence, considering that plant growth must be in line with changes in soil characteristics, the result that provided the higher plant shoot dry matter mass was by applying 0.55% biomass in both soils. Therefore, the application of microalgae biomass produced from a meat processing industry effluent treatment promoted a biologically active soil and boosted plant growth.

Influence of tillage and residue management practices on productivity, sustainability, and soil biological properties of rice-barley cropping systems in indo-gangetic plain of India

Introduction

Conservation agriculture is a sustainable system of farming that safeguard and conserves natural resources besides enhancing crop production. The biological properties of soil are the most sensitive indicator to assess the short term impact of management practices such as tillage and residue incorporation.

Methods

Nine treatments of tillage and residue management practices [Reduced till direct seeded rice-zero till barley (RTDSR–ZTB); RTDSR–ZTB–green gram residue (Gg); Zero till direct seeded rice–zero till barley–zero till green gram (ZTDSR–ZTB–ZTGg); RTDSR–ZTB + rice residue at 4 t ha 1 (RTDSR–ZTBRR4); RTDSR–ZTBRR6; un-puddled transplanted rice (UPTR)–ZTB–Gg; UPTR–ZTBRR4; UPTR–ZTBRR6, and puddled transplanted rice (PTR)–RTB] executed under fixed plot for five years on crop productivity and soil biological properties under rice-barley production system.

Results

The shifting in either RTDSR or ZTDSR resulted in yield penalty in rice compared to PTR. The PTR recorded highest pooled grain yield of 3.61 ha−1. The rice grain yield reduced about 10.6% under DSR as compared to PTR. The ZTB along with residue treatments exhibited significantly higher grain yield over ZTB, and the RTDSR-ZTBRR6 registered highest pooled grain yield of barley. The system productivity (12.45 t ha−1) and sustainable yield index (0.87) were highest under UPTR-ZTBRR6. Biological parameters including microbial biomass carbon, soil respiration, microbial enzymes (Alkaline phosphatase, nitrate reductase and peroxidase), fluorescein diacetate hydrolysis, ergosterol, glomalin related soil proteins, microbial population (bacteria, fungi and actinobacteria) were found to be significantly (p &lt; 0.05) effected by different nutrient management practices. Based on the PCA analysis, Fluorescein diacetate hydrolysis, microbial biomass carbon, soil respiration, nitrate reductase and fungi population were the important soil biological parameters indicating soil quality and productivity in present experiment. The results concluded that UPTR-ZTBRR6 was a more suitable practice for maintaining system productivity and soil biological health.

Discussion

The understanding of the impact of different tillage and residue management practices on productivity, soil biological properties and soil quality index under rice-barley cropping system will help in determining the combination of best conservation agriculture practices for improved soil quality and sustainable production.

Abutilon theophrasti's Resilience against Allelochemical-Based Weed Management in Sustainable Agriculture - Due to Collection of Highly Advantageous Microorganisms?

Abutilon theophrasti Medik. (velvetleaf) is a problematic annual weed in field crops which has invaded many temperate parts of the world. Since the loss of crop yields can be extensive, approaches to manage the weed include not only conventional methods, but also biological methods, for instance by microorganisms releasing phytotoxins and plant-derived allelochemicals. Additionally, benzoxazinoid-rich rye mulches effective in managing common weeds like Amaranthus retroflexus L. have been tested for this purpose. However, recent methods for biological control are still unreliable in terms of intensity and duration. Rye mulches were also ineffective in managing velvetleaf. In this review, we present the attempts to reduce velvetleaf infestation by biological methods and discuss possible reasons for the failure. The resilience of velvetleaf may be due to the extraordinary capacity of the plant to collect, for its own survival, the most suitable microorganisms from a given farming site, genetic and epigenetic adaptations, and a high stress memory. Such properties may have developed together with other advantageous abilities during selection by humans when the plant was used as a crop. Rewilding could be responsible for improving the microbiomes of A. theophrasti.

Pulse-based cropping systems for soil health restoration, resources conservation, and nutritional and environmental security in rainfed agroecosystems

Pulses are an important source of energy and protein, essential amino acids, dietary fibers, minerals, and vitamins, and play a significant role in addressing global nutritional security. The global pulse area, production, and average productivity increased from 1961 to 2020 (60 years). Pulses are usually grown under rainfed, highly unstable, and complex production environments, with substantial variability in soil and environmental factors, high year-to-year output variability, and variation in soil moisture. Since the last six decades, there is not much satisfactory improvement in the yield of pulses because of their cultivation in harsh environments, coupled with their continuous ignorance of the farmers and governments in policy planning. As a result, the global food supplies through pulses remained negligible and amounted to merely ~1.0% of the total food supply and 1.2% of the vegan food system. In this situation, protein-rich food is still a question raised at the global level to make a malnutrition-free world. Pulses are a vital component of agricultural biological diversity, essential for tackling climate change, and serve as an energy diet for vegetarians. Pulses can mitigate climate change by reducing the dependence on synthetic fertilizers that artificially introduce nitrogen (N) into the soil. The high demand and manufacture of chemical fertilizers emit greenhouse gases (GHGs), and their overuse can harm the environment. In addition, the increasing demand for the vegetal protein under most global agroecosystems has to be met with under a stressed rainfed situation. The rainfed agroecosystem is a shelter for poor people from a significant part of the globe, such as Africa, South Asia, and Latin America. Nearly, 83% [over 1,260 million hectares (ha)] of cultivated land comes under rainfed agriculture, contributing significantly to global food security by supplying over 60% of the food. In rainfed areas, the limitation of natural resources with the shrinking land, continuous nutrient mining, soil fertility depletion, declining productivity factor, constantly depleting water availability, decreasing soil carbon (C) stock, augmented weed menace, ecological instability, and reduced system productivity are creating a more challenging situation. Pulses, being crops of marginal and semi-marginal soils of arid and semi-arid climates, require less input for cultivation, such as water, nutrients, tillage, labor, and energy. Furthermore, accommodation of the area for the cultivation of pulses reduces the groundwater exploitation, C and N footprints, agrochemical application in the cropping systems, and ill effects of climate change due to their inherent capacity to withstand harsh soil to exhibit phytoremediation properties and to stand well under stressed environmental condition. This article focuses on the role of pulses in ecological services, human wellbeing, soil, environmental health, and economic security for advanced sustainability. Therefore, this study will enhance the understanding of productivity improvement in a system-based approach in a rainfed agroecosystem through the involvement of pulses. Furthermore, the present study highlighted significant research findings and policy support in the direction of exploring the real yield potential of pulses. It will provide a road map to producers, researchers, policymakers, and government planners working on pulses to promote them in rainfed agroecosystems to achieve the United Nations (UN's) Sustainable Development Goals (SDGs).

Plant Growth-Promoting Bacteria (PGPB) with Biofilm-Forming Ability: A Multifaceted Agent for Sustainable Agriculture

Plant growth-promoting bacteria (PGPB) enhance plant growth, as well as protect plants from several biotic and abiotic stresses through a variety of mechanisms. Therefore, the exploitation of PGPB in agriculture is feasible as it offers sustainable and eco-friendly approaches to maintaining soil health while increasing crop productivity. The vital key of PGPB application in agriculture is its effectiveness in colonizing plant roots and the phyllosphere, and in developing a protective umbrella through the formation of microcolonies and biofilms. Biofilms offer several benefits to PGPB, such as enhancing resistance to adverse environmental conditions, protecting against pathogens, improving the acquisition of nutrients released in the plant environment, and facilitating beneficial bacteria–plant interactions. Therefore, bacterial biofilms can successfully compete with other microorganisms found on plant surfaces. In addition, plant-associated PGPB biofilms are capable of protecting colonization sites, cycling nutrients, enhancing pathogen defenses, and increasing tolerance to abiotic stresses, thereby increasing agricultural productivity and crop yields. This review highlights the role of biofilms in bacterial colonization of plant surfaces and the strategies used by biofilm-forming PGPB. Moreover, the factors influencing PGPB biofilm formation at plant root and shoot interfaces are critically discussed. This will pave the role of PGPB biofilms in developing bacterial formulations and addressing the challenges related to their efficacy and competence in agriculture for sustainability.

Comparative study of pyrochar and hydrochar on peanut seedling growth in a coastal salt-affected soil of Yellow River Delta, China

Biochar (i.e., pyrochar and hydrochar) application is a promising strategy to improve soil quality and productivity. However, the comparison of biochars with different carbonization methods and feedstocks for the plant growth in the coastal salt-affected soil remains limited. In this study, a 30-day microcosmic experiment was conducted to compare the effects of pyrochars and hydrochars derived from reed straw (RPC and RHC) and cow manure (CPC and CHC) on the peanut (Arachis hypogaea L.) seedling growth in a coastal salt-affected soil of Yellow River Delta, China. The results showed that RPC, CHC and CPC significantly elevated fresh shoot weight by 67.77%-89.37%, whereas the RHC amendment showed little effect. The malondialdehyde contents in peanut seedling leaves were significantly declined by 25.28%-35.51% with pyrochar and hydrochar amendments, which might be associated with the enhanced proline contents and K/Na ratios. The stimulation of certain phytohormones (i.e., indole-3-acetic acid, zeatin riboside, gibberellic acid 3) in peanut seedlings with pyrochar and hydrochar amendments might be attributed to the growth enhancement. RPC, CPC and CHC improved the soil properties and fertility such as cation-exchange capacity (CEC), total nitrogen, and available potassium and water holding capacity (WHC) of the coastal salt-affected soil. However, RHC not only significantly decreased soil CEC and WHC, but also increased soil exchangeable sodium percentage. The abundances of soil beneficial bacteria, such as f_Gemmatimonadacea, Sphingomonas, Blastococcus and Lysobacter were enhanced by RPC, CHC and CPC amendments, which were mainly associated with the increased WHC and CEC. Fungal community was less sensitive to pyrochar and hydrochar amendments than bacterial community according to the relative abundance and diversity, and beneficial fungi, such as Oidiodendron and Sarocladium were enriched in the CHC soil. Overall, the application of RPC, CHC and CPC showed greater potentials for the enhancement of peanut growth in a coastal salt-affected soil.

Regulation of Soil Microbial Community Structure and Biomass to Mitigate Soil Greenhouse Gas Emission

Sustainable reduction of fertilization with technology acquisition for improving soil quality and realizing green food production is a major strategic demand for global agricultural production. Introducing legume (LCCs) and/or non-legume cover crops (NLCCs) during the fallow period before planting main crops such as wheat and corn increases surface coverage, retains soil moisture content, and absorbs excess mineral nutrients, thus reducing pollution. In addition, the cover crops (CCs) supplement the soil nutrients upon decomposition and have a green manure effect. Compared to the traditional bare land, the introduction of CCs systems has multiple ecological benefits, such as improving soil structure, promoting nutrient cycling, improving soil fertility and microbial activity, controlling soil erosion, and inhibiting weed growth, pests, and diseases. The residual decomposition process of cultivated crops after being pressed into the soil will directly change the soil carbon (C) and nitrogen (N) cycle and greenhouse gas emissions (GHGs), and thus affect the soil microbial activities. This key ecological process determines the realization of various ecological and environmental benefits of the cultivated system. Understanding the mechanism of these ecological environmental benefits provides a scientific basis for the restoration and promotion of cultivated crops in dry farming areas of the world. These findings provide an important contribution for understanding the mutual interrelationships and the research in this area, as well as increasing the use of CCs in the soil for better soil fertility, GHGs mitigation, and improving soil microbial community structure. This literature review studies the effects of crop biomass and quality on soil GHGs emissions, microbial biomass, and community structure of the crop cultivation system, aiming to clarify crop cultivation in theory.

Integrated Soil Health Management for Plant Health and One Health: Lessons From Histories of Soil-borne Disease Management in California Strawberries and Arthropod Pest Management

Many soil health assessment methods are being developed. However, they often lack assessment of soil-borne diseases. To better address management strategies for soil-borne disease and overall soil and plant health, the concept of Integrated Soil Health Management (ISHM) is explored. Applying the concept of Integrated Pest Management and an agroecological transdisciplinary approach, ISHM offers a framework under which a structure for developing and implementing biointensive soil health management strategies for a particular agroecosystem is defined. As a case study, a history of soil-borne disease management in California strawberries is reviewed and contrasted with a history of arthropod pest management to illustrate challenges associated with soil-borne disease management and the future directions of soil health research and soil-borne disease management. ISHM system consists of comprehensive soil health diagnostics, farmers' location-specific knowledge and adaptability, a suite of soil health management practices, and decision support tools. As we better understand plant-soil-microorganism interactions, including the mechanisms of soil suppressiveness, a range of diagnostic methodologies and indicators and their action thresholds may be developed. These knowledge-intensive and location-specific management systems require transdisciplinary approaches and social learning to be co-developed with stakeholders. The ISHM framework supports research into the broader implications of soil health such as the “One health” concept, which connects soil health to the health of plants, animals, humans, and ecosystems and research on microbiome and nutrient cycling that may better explain these interdependencies.

Recent advances in nanoremediation: Carving sustainable solution to clean-up polluted agriculture soils

Agriculture is one of the foremost significant human activities, which symbolizes the key source for food, fuel and fibers. This activity results in a lot of ecological harms particularly with the excessive usage of chemical fertilizers and pesticides. Different agricultural practices have remained industrialized to advance food production, due to the growth in the world population and to meet the food demand through the routine use of more effective fertilizers and pesticides. Soil is intensely embellished by environmental contamination and it can be stated as "universal incline." Soil pollution usually occurs from sewage wastes, accidental discharges or as byproducts of chemical residues of unrestrained production of numerous materials. Soil pollution with hazardous materials alters the physical, chemical, and biological properties, causing undesirable changes in soil fertility and ecosystem. Engineered nanomaterials offer various solutions for remediation of contaminated soils. Engineered nanomaterial-enable technologies are able to prevent the uncontrolled release of harmful materials into the environment along with capabilities to combat soil and groundwater borne pollutants. Currently, nanobiotechnology signifies a hopeful attitude to advance agronomic production and remediate polluted soils. Studies have outlined the way of nanomaterial applications to restore the eminence of the environment and assist the detection of polluted sites, along with potential remedies. This review focuses on the latest developments in agricultural nanobiotechnology and the tools developed to combat soil or land and or terrestrial pollution, as well as the benefits of using these tools to increase soil fertility and reduce potential toxicity.

How Anthropocene Might Save the World: Metamorphosis

The Anthropocene has created a new cartography. It moves between the rejection of scientific disciplines, overcoming dualism and a change of coordinates with which to interpret the world. The Anthropocene unites two fields of knowledge: geology and anthropology. The “Axial Age” divides daily practices (the World of life) and the objective view of nature (the World of science). The Anthropocene” by Paul J. Crutzen and Eugene Stoermer has two distinct parts; the first establishes “a period of time”, and the second establishes an “epistemic tool”. This paper is intended to illustrate the epistemological dimension of the Anthropocene. Eduard Suess, Antonio Stopani, Pierre Teilhard de Chardin, Vladimir Vernadsky, etc. anticipated the concept of the Anthropocene a century ago. The hypothesis of the earth as a “living organism” is inspired by the Goethean Science or Naturwissenschaft of Johann Wolfgang von Goethe. It reinforces the character of “rupture” that the Anthropocene has. The Gaia Hypothesis, which is built from elements of Earth science systems, sees the pressing need for a global system and to overcome the barriers between disciplines. The Anthropocene allows both ancient quarrels and the roots of philosophical thought to be reviewed. The metamorphosis linked to the Anthropocene represents the interplay between “collapse” and “awakening”. Focus on the objectivity of the “primary effects”—the “public bads”—leads to the imminent ecological apocalypse. If we focus on “secondary effects”, we observe the metamorphosis of “public bads” into “public goods”. The “good” hides behind the “evil”. We are not at the end of Civilization; we are before new beginnings, new rules, new structures. The Anthropocene could save the world thanks to the metamorphosis of our consciousness of the world.

Using Soil Sustainability and Resilience Concepts to Support Future Land Management Practice: A Case Study of Mt Grand Station, Hāwea, New Zealand

Soil acts as the integrator of processes operating within the biological and hydrological landscapes and responds to external disturbances and processes on varying time scales. The impact of any change results in a corresponding response in the system; which is dependent on the resistance of the soil system to the disturbance. Irreversible permanent change results when the soil system shifts over a threshold tipping point; with the soil system experiencing a regime shift with associated structural and functional collapse. Climate change is the most important external disturbance or stressor on these systems due to changes in precipitation, temperature and moisture regimes. Our research at Mt Grand is focused on approaches to increasing land use resiliency in the face of environmental change. Our purpose is to select and apply soil quality indices which can be used to assess soil resilience to external disturbance events for Mt Grand Station in New Zealand. We will identify biophysical variations and landscape drivers in soil resilience; and use these results to match land management practices with variations in soil resilience. For example, soils with low resilience will only have land management practices that have a low impact on the soil resource. We selected soil attributes that represented indicators of resistance, used to quantify the capacity of a soil to recover its functionality. We mapped this soil resilience framework against a national database of soil and landscape attributes for Mt Grand Station. The output from this research is to posit a conceptual framework of soil quality indices which relates to soil resilience, and thus to create a spatial map of soil resilience for Mt Grand Station.

Grass waste utilization to alter aggregate-related carbon chemical composition and fungal community structure in apple orchard

The grass-waste management model affects soil organic carbon (SOC) and the microorganism community structure; however, studies on the relationship between the fungal community structure and the SOC chemical component at the aggregate level are poor. Solid-state ¹³C NMR and 18 S rDNA methods were used to evaluate the relationship between the SOC chemical composition and fungal community abundance at the aggregate level. Grass mulching significantly increased the percentage of labile carbon O-alkyl C (5.19%-11.79%) and decreased the instability of SOC (1.38-0.69). Microaggregates contained higher alkyl C (33.77%) and lower aromatic C (18.31%), and the A/O-A ratio (1.03) was higher than that of macroaggregates (0.89-0.96). Ascomycota, Basidiomycota and Mortierellomycota dominated the fungal community at the phylum level, and their abundance increased after grass mulching. Microaggregates supported more microbial diversity and richness and were rich in the Ascomycota (36.69%-67.49%) phylum, while LM aggregates were rich in Basidiomycota (5.62%-39.84%). We proved that changes in the O-alkyl C, carbonyl C, aromatic C and alkyl C of SOC chemical components were closely connected to fungal community composition, which together explained the change in fungal composition by 63.81%-71.99% among aggregates. We concluded that alterations in the chemical form of organic carbon were closely related to a change in the soil fungal community. This connection has a positive impact on soil nutrient utilization and SOC conversion in fruit-grass composite ecosystems and promotes the understanding of the relationship between the soil microbial community and nutrient cycling during long-term grass waste utilization.

Health Consequences of Improving the Content of Ergothioneine in the Food Supply

Ergothioneine (ERGO) is a potent antioxidant and anti-inflammatory amino acid that is highly bioavailable to humans from the diet. ERGO is now regarded by some as a "longevity vitamin" that has the potential to mitigate some chronic diseases of aging and thereby increase life expectancy when present in adequate amounts. However, only limited knowledge exists regarding ERGO content in the human diet. Since ERGO is produced primarily by fungi, mushrooms are known to be the leading dietary source, but ERGO is found in relatively low amounts throughout the food chain as a result of soil-borne fungi or bacteria passing it on to plants through their roots. Some conventional agricultural practices that negatively impact soil fungi, such as excessive soil disturbance (plowing), can significantly reduce ERGO content of food crops when compared to regenerative practices such as eliminating tillage of the soil (No-Till). This has led us to the concept that ERGO may be a definitive connection between soil health and human health.

Effects of growth promoting microorganisms on tomato seedlings growing in different media conditions

Plant growth-promoting microbes (PGPM) play vital roles in maintaining crop fitness and soil health in stressed environments. Research have included analysis-based cultivation of soil-microbial-plant relationships to clarify microbiota potential. The goal of the research was to (i) evaluate the symbiotic microorganism effects on tomato seedling fitness under stressed conditions simulating a fragile soil susceptible to degradation; (ii) compare the plant-microbial interactions after inoculation with microbial isolates and fungi-bacteria consortia; (iii) develop an effective crop-microbial network, which improves soil and plant status. The experimental design included non-inoculated treatments with peat and sand at ratios of 50:50, 70:30, 100:0 (v:v), inoculated treatments with arbuscular mycorrhizal fungi (AMF) and Azospirillum brasilense (AZ) using the aforementioned peat:sand ratios; and treatment with peat co-inoculated with AMF and Saccharothrix tamanrassetensis (S). AMF + AZ increased root fresh weight in peat substrate compared to the control (4.4 to 3.3 g plant^–1). An increase in shoot fresh weight was detected in the AMF + AZ treatment with a 50:50 peat:sand ratio (10.1 to 8.5 g plant^-1). AMF + AZ reduced antioxidant activity (DPPH) (18–34%) in leaves, whereas AMF + S had the highest DPPH in leaves and roots (45%). Total leaf phenolic content was higher in control with a decreased proportion of peat. Peroxidase activity was enhanced in AMF + AZ and AMF + S treatments, except for AMF + AZ in peat. Microscopic root assays revealed the ability of AMF to establish strong fungal-tomato symbiosis; the colonization rate was 78–89%. AMF + AZ accelerated K and Mg accumulation in tomato leaves in treatments reflecting soil stress. To date, there has been no relevant information regarding the successful AMF and Saccharothrix co-inoculation relationship. This study confirmed that AMF + S could increase the P, S, and Fe status of seedlings under high organic C content conditions. The improved tomato growth and nutrient acquisition demonstrated the potential of PGPM colonization under degraded soil conditions.

Long-term biosolids land application influences soil health

Soil health assessments associated with organic amendment applications have primarily focused attention on manure or composts. Yet, quantifying specific changes in soil health associated with biosolids land applications has yet to be determined. Our objectives were to evaluate the changes in various soil indicators, and utilizing the Soil Management Assessment Framework (SMAF), quantify changes in soil indicator scores and soil health indices as affected by either increasing inorganic N fertilizer (0 up to 112 kg N ha^-1) or biosolids (0 up to 11.2 dry Mg ha^-1) applied every other year over 22 years. Soils were sampled (0 to 20 cm depth) following 22 years of N fertilizer or biosolids inputs to a dryland wheat-fallow (Triticum aestivum L.) rotation, 11 soil health indicators were monitored under SMAF guidelines, and indicators, indicator scores, and soil health indices were analyzed statistically. In general, increasing N fertilizer application rates had little effect on soil indicators, SMAF indicator scores or soil health indices. Increasing biosolids application rates increased soil organic C (SOC) and potentially mineralizable N (PMN). The SMAF indicator scores showed upward trends for soil pH, SOC, PMN, and microbial biomass C (MBC) associated with increasing biosolids application rates; discussing trends are important as these indicator scores are combined to provide soil health indices. Indeed, increasing biosolids application rates increased soil chemical and biological health indices, leading to an improvement in the overall soil health index. When comparing the overall N fertilizer to biosolids effect, biosolids applications significantly improved the soil biological health index. Results indicate that long-term biosolids land application to semi-arid, dryland wheat fallow rotations, similar to those studied, improve various aspects of soil health. These findings suggest that biosolids may play a pivotal role in dryland agroecosystem sustainability.

Application of a soil quality triad in assessing ecological risk posed to croplands

Healthy soil ecosystems fulfil multiple functions (e.g. cycling nutrients and controlling pests), which play an important role in sustainable food production. However, the application of polluted irrigation water poses a major risk to soil quality (health) and warrants investigation to ultimately inform decision-making. We hypothesised that the standardised soil quality TRIAD approach (ISO 19204), which integrates the chemistry, ecology, and ecotoxicology lines of evidence, can be used as part of an ecological risk assessment of cropland soils. To investigate the applicability of this approach in an agricultural setting, we collected soils from croplands associated with the Hartbeespoort and Crocodile (West) irrigation schemes, which utilise water known to be heavily impacted by anthropogenic (metal, nutrient, and salt) pollution. Croplands associated with the Marico-Bosveld Irrigation Scheme served as the reference systems. Data from the three lines of evidence were scaled, weighted, and integrated. Moderate risk was evidenced for nutrient and salt content in most croplands associated with the Hartbeespoort Irrigation Scheme. However, either no or low risk was recorded for the ecology and ecotoxicology lines of evidence. Finally, the integrated risk assessment concluded that only low ecological risk was posed to soil quality, likely as a result of agricultural activities (e.g. tillage and fertiliser application) that deteriorated soils also at the reference system. This study shows important limitations in the application of ecological risk assessments in conventionally farmed soils, but still holds promise for organic and conservation systems.

Intra-Soil Milling for Stable Evolution and High Productivity of Kastanozem Soil

The long-term field experiment on the Kastanozem showed that the standard moldboard plowing to a depth of 22 cm (control), chiseling to a depth of 35 cm, and three-tier plowing (machine type PTN–40) to a depth of 45 cm was incapable of providing a stable soil structure and aggregate system. The transcendental Biogeosystem Technique (BGT*) methodology for intra-soil milling of the 20–45 cm layer and the intra-soil milling PMS–70 machine were developed. The PMS–70 soil processing provided the content of 1–3 mm sized aggregate particle fraction in the illuvial horizon of about 50 to 60%, which was 3-fold higher compared to standard plowing systems. Soil bulk density reduced in the layer 20–40 cm to 1.35 t m−3 compared to 1.51 t m−3 in the control option. In the control, the rhizosphere developed only in the soil upper layer. There were 1.3 roots per cm2 in 0–20 cm, and 0.2 roots per cm2 in 20–40 cm. The rhizosphere spreads only through the soil crevices after chilling. After three-tier plowing (PTN–40), the rhizosphere developed better in the local comfort zones of the soil profile between soil blocks impermeable for roots. After intra-soil milling PMS–70, the rhizosphere developed uniformly in the whole soil profile: 2.2 roots per cm2 in 0–20 cm; 1.7 roots per cm2 in 20–40 cm. Matric water potential was higher, soil salinization was lower, and the pH was close to neutral. Soil organic matter (SOM) content increased to 3.3% in 0–20 cm and 2.1% in 20–40 cm compared to the control (2.0% in the 0–20 cm soil layer and 1.3% in the 20–40 cm layer). The spring barley yield was 53% higher compared to the control. The technology life cycle profitability was moldboard 21.5%, chiseling 6.9%, three-tier 15.6%, and intra-soil milling 45.6%. The new design of the intra-soil milling machine provides five times less traction resistance and 80% increased reliability, halving energy costs.

Microbial Biostimulants as Response to Modern Agriculture Needs: Composition, Role and Application of These Innovative Products

An increasing need for a more sustainable agriculturally-productive system is required in order to preserve soil fertility and reduce soil biodiversity loss. Microbial biostimulants are innovative technologies able to ensure agricultural yield with high nutritional values, overcoming the negative effects derived from environmental changes. The aim of this review was to provide an overview on the research related to plant growth promoting microorganisms (PGPMs) used alone, in consortium, or in combination with organic matrices such as plant biostimulants (PBs). Moreover, the effectiveness and the role of microbial biostimulants as a biological tool to improve fruit quality and limit soil degradation is discussed. Finally, the increased use of these products requires the achievement of an accurate selection of beneficial microorganisms and consortia, and the ability to prepare for future agriculture challenges. Hence, the implementation of the microorganism positive list provided by EU (2019/1009), is desirable.

Review: Closing nutrient cycles for animal production - Current and future agroecological and socio-economic issues

We face an urgent and complex challenge to produce large amounts of healthful animal and plant foods for an estimated 10 billion people by 2050 while maintaining essential ecosystem services. To compound this challenge, we must do so while not further degrading our environment and conserving essential nutrients such as copper, magnesium, phosphorus, selenium, and zinc that are in short supply for fertilization. Much good research has been done, but to meet this challenge, we need to greatly increase on-farm and watershed-scale research including on-farm evaluations and demonstrations of the putative best combinations of stewardship techniques over multiple years in real-world settings, which are backed by data on nutrient inputs, soil, air, and water chemistry (fluxes) and water discharge. We also need to work with farmers, specialists, and generalists in highly creative interdisciplinary teams that resist forming silos and that use combinations of techniques linked to agroecology and industrial ecology in combination with state-of-the-art engineering. Some of these research and demonstration farms need to be in catchments prone to pollution of aquatic and terrestrial ecosystems with nitrogen, phosphorus, and other nutrients. Some promising approaches include mixed crop-livestock systems, although these alone may not be productive enough without updating to meet the dietary needs of an estimated 10 billion people by 2050. Other approaches could be state-of-the-art multi-trophic production systems, which include several species of plants integrated into production with vertebrates (e.g., ruminants, pigs, poultry), invertebrates (e.g., insects, earthworms) and fish, shrimp, or crayfish to utilize wasted feed and excreta, and recycle nutrients back to the animals (via plants or invertebrates) in the systems. To cut costs and increase desirable outputs, we must recycle nutrients much better within our food production systems and produce both animal and plant foods more efficiently as nutrients cycle through systems.

Microbiome Aggregated Traits and Assembly Are More Sensitive to Soil Management than Diversity

How soil is managed, particularly for agriculture, exerts stresses upon soil microbiomes, resulting in altered community structures and functional states. Understanding how soil microbiomes respond to combined stresses is important for predicting system performance under different land use scenarios, aids in identification of the most environmentally benign managements, and provides insight into how system function can be recovered in degraded soils. We use a long-established field experiment to study the effects of combined chronic (press) disturbance of the magnitude of organic carbon inputs with acute (pulse) effects of physical disturbance by tillage and chemical disturbance due to inorganic fertilization and pesticide application. We show that because of the variety of ways it can be assessed, biodiversity-here based on microbial small subunit rRNA gene phylotypes-does not provide a consistent view of community change. In contrast, aggregated traits associated with soil microbiomes indicate general loss of function, measured as a reduction of average genome lengths, associated with chronic reduction of organic inputs in arable or bare fallow soils and altered growth strategies associated with rRNA operon copy number in prokaryotes, as well as a switch to pathogenicity in fungal communities. In addition, pulse disturbance by soil tillage is associated with an increased influence of stochastic processes upon prokaryote community assembly, but fungicide used in arable soils results in niche assembly of fungal communities compared to untilled grassland. Overall, bacteria, archaea, and fungi do not share a common response to land management change, and estimates of biodiversity do not capture important facets of community adaptation to stresses adequately. IMPORTANCE Changes in soil microbiome diversity and function brought about by land management are predicted to influence a range of environmental services provided by soil, including provision of food and clean water. However, opportunities to compare the long-term effects of combinations of stresses imposed by different management approaches are limited. We exploit a globally unique 50-year field experiment, demonstrating that soil management practices alter microbiome diversity, community traits, and assembly. Grassland soil microbiomes are dominated by fewer-but phylogenetically more diverse-prokaryote phylotypes which sustain larger genomes than microbiomes in arable or bare fallow soil maintained free of plants. Dominant fungi in grassland soils are less phylogenetically diverse than those in arable or fallow soils. Soil tillage increases stochastic processes in microbiome assembly: this, combined with reduced plant biomass, presents opportunities for organisms with a capacity for pathogenesis to become established in stressed soils.

Cultivated Land Use Zoning Based on Soil Function Evaluation from the Perspective of Black Soil Protection

Given that cultivated land serves as a strategic resource to ensure national food security, blind emphasis on improvement of food production capacity can lead to soil overutilization and impair other soil functions. Therefore, we took Heilongjiang province as an example to conduct a multi-functional evaluation of soil at the provincial scale. A combination of soil, climate, topography, land use, and remote sensing data were used to evaluate the functions of primary productivity, provision and cycling of nutrients, provision of functional and intrinsic biodiversity, water purification and regulation, and carbon sequestration and regulation of cultivated land in 2018. We designed a soil function discriminant matrix, constructed the supply-demand ratio, and evaluated the current status of supply and demand of soil functions. Soil functions demonstrated a distribution pattern of high grade in the northeast and low grade in the southwest, mostly in second-level areas. The actual supply of primary productivity functions in 71.32% of the region cannot meet the current needs of the population. The dominant function of soil in 34.89% of the area is water purification and regulation, and most of the cultivated land belongs to the functional balance region. The results presented herein provide a theoretical basis for optimization of land patterns and improvement of cultivated land use management on a large scale, and is of great significance to the sustainable use of black soil resources and improvement of comprehensive benefits.

Biochar and urea co-application regulates nitrogen availability in soil

Overuse of nitrogenous fertilizers especially urea has been considered a significant source of reactive N causing acute environmental impacts through leaching, volatilization, and N₂O gas emission from fertilized crop fields. However, some recent studies have proposed that such environmental losses of N can be ignored by adapting an alternative way of combining nitrogenous fertilizer with pyrolyzed biomass (biochar). Therefore, the effect of co-application of rice-residue biochar (RB) or poultry manure biochar (PB) along with urea on N dynamics was investigated by conducting a 60-day incubation experiment. The results showed that urea led to greater N mineralization (0.2 µg N g^-1 soil day^-1) due to the easy availability of ammonical-N (NH₄⁺-N) produced from hydrolysis that acted as a substrate for nitrification. Sole application of biochars (RB or PB) or their co-application with urea resulted in 38-45% and 19-28% lower N mineralization than the sole urea amended soil, respectively. The lower N mineralization in sole biochar or biochar plus urea amended soil was most likely caused due to (1) increased C:N ratio of the biochar amended soil, (2) adsorption of NH₄⁺-N by biochar, (3) microbial immobilization of the nitrogen in the amended soil, and (4) lower urease activity in the treatments amended with biochar. Thus, it may be concluded that the co-application of biochar with urea can reduce N losses through moderation of N mineralization and make it available to plants for longer periods.

[Effect of winter cover crops on the soil microbiome: a systematic literature review]

The inclusion of winter cover crops (WCC) in no-till (NT) systems in replacement of bare fallow is a promising alternative to improve soil health and consequently, contribute to environmental sustainability of agricultural systems. This review provides a comprehensive evaluation of the effects of the use of WCC in rotation with summer cash crops under NT systems on the soil microbiome versus bare fallows. A systematic literature search was conducted to evaluate the impact of WCC on microbial parameters indicative of abundance, activity and diversity. Twenty-two papers were selected based on seven combined criteria. The results of this review show that enzyme activities in soil are enhanced with the inclusion of WCC in the rotation, particularly those that include legumes and mix of species. In general, more than half of the analyzed papers report higher microbial biomass in soils with WCC than in bare fallow. Interestingly, the effects of WCC on microbial parameters are independent of the duration of the experiments. However, more basic research is necessary to reduce the heterogeneity of the studies and to better understand the complexity of the interactions between WCC and the soil microbiome.

Long term crop rotation effect on subsequent soybean yield explained by soil and root-associated microbiomes and soil health indicators

Crop rotation is an important management tactic that farmers use to manage crop production and reduce pests and diseases. Long-term crop rotations may select groups of microbes that form beneficial or pathogenic associations with the following crops, which could explain observed crop yield differences with different crop sequences. To test this hypothesis, we used two locations each with four long-term (12–14-year), replicated, rotation treatments: continuous corn (CCC), corn/corn/soybean (SCC), corn/soybean (CSC), and soybean/corn (SCS). Afterwards, soybean was planted, and yield and soil health indicators, bulk soil microbiome, and soybean root-associated microbiome were assessed. Soybean yields, as well as soil protein, and POXC as soil health indicators were higher following CCC than in the other three treatments at both locations. A bacterial taxon in family JG30-KF-AS9 was enriched in CCC, whereas Microvirga, Rhodomicrobium, and Micromonosporaceae were enriched in SCS. Several ascomycetes explain lowered yield as soybean pathogens in SCS. Surprisingly, Tumularia, Pyrenochaetopsis and Schizothecium were enriched in soybean roots after CCC, suggesting corn pathogens colonizing soybean roots as nonpathogens. Our finding of associations between soil health indicators related to microbiomes and soybean yield has wide-ranging implications, opening the possibility of manipulating microbiomes to improve crop yield potential.

Microbial response to designer biochar and compost treatments for mining impacted soils

The Oronogo-Duenweg mining belt is a designated United States Environmental Protection Agency Superfund site due to lead-contaminated soil and groundwater by former mining and smelting operations. Sites that have undergone remediation - in which the O, A, and B horizons have been removed alongside the lead contamination - have an exposed C horizon and are incalcitrant to revegetation efforts. Soils also continue to contain quantifiable Cd and Zn concentrations. In order to improve soil conditions and encourage successful site revegetation, our study employed three biochars, sourced from different feedstocks (poultry litter, beef lot manure, and lodge pole pine), at two rates of application (2.5%, and 5%), coupled with compost (0%, 2.5% and 5% application rates). Two plant species - switchgrass (Panicum virgatum) and buffalograss (Bouteloua dactyloides) - were grown in the amended soils. Amendment of soils with poultry litter biochar applied at 5% resulted in the greatest reduction of soil bioavailable Cd and Zn. Above ground biomass yields were greatest with beef lot manure biochar applied at 2.5% with 5% compost, or with 5% biochar at 2.5% and 5% compost rates. Maximal microbial biomass was achieved with 5% poultry litter biochar and 5% compost, and microbial communities in soils amended with poultry litter biochar distinctly clustered away from all other soil treatments. Additionally, poultry litter biochar amended soils had the highest enzyme activity rates for β-glucosidase, N-acetyl-β-D-glucosaminidase, and esterase. These results suggest that soil reclamation using biochar and compost can improve mine-impacted soil biogeophysical characteristics, and potentially improve future remediation efforts.

Defining and validating regenerative farm systems using a composite of ranked agricultural practices

Background: Ongoing efforts attempt to define farms as regenerative to aid marketers, policymakers, farmers, etc. The approach needs to balance precision with function, and must be transparent, simple, scalable, transferable, incorruptible, and replicable. Methods: We developed practice-based scoring systems to distinguish regenerative cropland and rangeland, and validate them based on whether these scores scaled with regenerative goals on actual farm operations. Study systems included cornfields of the Upper Midwest, almond orchards of California, and rangeland systems of the Northern Plains. Response variables included soil carbon and organic matter, soil micronutrients, water infiltration rates, soil microbial communities, plant community structure, invertebrate community structure, pest populations, yields, and profit. Results: Regenerative outcomes were strongly correlated with our approach to farm scoring. Soil organic matter, fine particulate organic matter, total soil carbon, total soil nitrogen, phosphorous, calcium and sulfur all increased alongside regenerative matrix scores in one or both of the cropping systems. Water infiltration rates were significantly faster in more regenerative almond orchards. Soil bacterial biomass and Haney soil health test scores were higher as cropland incorporated more regenerative practices. Plant species diversity and biomass increased significantly with the number of regenerative practices employed on almonds and rangelands. Invertebrate species diversity and richness were positively associated with regenerative practices in corn, almonds, and rangelands, whereas pest populations and almond yields were unaffected by the number of regenerative practices. Corn yields were negatively associated with more regenerative practices, while almond yields were unaffected by the number of regenerative practices. Profit was significantly higher on more regenerative corn and almond operations. Conclusions: Our scoring system scaled positively with desired regenerative outcomes, and provides the basis for predicting ecosystem responses with minimal information about the farming operation. Natural clusters in the number of regenerative practices used can be used to distinguish regenerative and conventional operations.

An evaluation of selected chemical, biochemical, and biological parameters of soil enriched with vermicompost

The aim of this study was to assess the changes in chemical and microbial properties and enzymatic activity of soil enriched with vermicompost derived from household waste. The vermicompost was tested in the rhizosphere of Larix decidua seedlings cultivated in 10-L pots in: (i) nursery soil (as the control), (ii) soil with 10% v/v vermicompost, and (iii) with 20% v/v vermicompost. The impact of vermicompost was assessed in terms of soil C/N ratio; bacterial, fungal, and nematode counts; and enzymatic activity. It was found that vermicompost increased the C/N ratio from 21 to 32, as well as the content of nitrate from 78 to 134 mg kg^-1, of ammonium from 14 to 139 mg kg^-1, of phosphorus from 92 to 521 mg kg^-1, and of potassium from 142 to 1912 mg kg^-1, compared with the control soil. The abundance of beneficial bacteria was increased (from 8.61 × 10⁷ to 37.9 × 10⁷), along with decreases in microbiological ratios of fungi and bacteria (e.g. fungi/Bacillus from 0.18818 to 0.00425). A significant 2- to 4-fold increase was observed compared with the control in the number of beneficial nematodes belonging to bacterivorous, fungivorous, and predatory groups with no change in the abundance of plant-parasitic nematodes. Addition of vermicompost brought about a change in soil enzyme activity. Vermicompost reduced the activity of alkaline phosphatase only. Both doses of vermicompost led to an increase in the activity of acid phosphatase, inorganic pyrophosphatase, dehydrogenases, β-glucosidase, and urease. Only the higher dose had an effect on increasing the activity of o-diphenol oxidase and proteases. No significant change was observed for nitrate reductase. Also, the presence of antibiotics produced by bacteria was detected depending on the dose of vermicompost, e.g. iturin (ituC) and bacillomycin (bmyB) were found in soil with a dose of 20% v/v vermicompost. Overall, vermicompost produced from household waste can be an excellent organic fertilizer for larch forest nurseries.

Identification of Organic Matter Dispersions Based on Light Scattering Matrices Focusing on Soil Organic Matter Management

The origin of organic matter, its spread, scattering, and functioning are influenced by the physical structure of liquid or dispersed media of organic matter. Refractive indices of fodder yeast grown on paraffin oil (paprin) and natural gas (gaprin) as well as Lycoperdon spore and organelles were measured by laser phase microscopy. The scattering matrices of aqueous suspensions of paprin, gaprin, and Lycoperdon spores were measured using a laser polarimeter with the scattering angle ranging from 20 to 150°. The experimentally measured scattering matrices have been approximated by the weighted sum of theoretically calculated scattering matrices using the T-matrix code developed by Mishchenko. Most of the particle radii in the filtered fraction of paprin and gaprin were within the range of about 0.05-0.12 μm. Particle radii of the Lycoperdon spore suspension were within the range of 0.4-2.4 μm, which corresponded to both whole spores and their separate organelles. A possibility of identifying a suspension by its scattering matrices was shown for a small difference in the real parts of the refractive index in the example of paprin and gaprin. The measurements of the light scattering matrix showed that for a small size parameter of about 1, the identification of paprin and gaprin can be based only on a difference in the particle shape. Refractive index difference is manifested for the size parameter values higher than 3. An example of a suspension consisting of micron-sized spores and their submicron organelles shows high sensitivity of the scattering matrix to the composition of the dispersed material. The presented data and models help to extrapolate the results of the light scattering matrix study to a vast spectrum of media of organic matter origin and functioning. This study focused on the Biogeosystem Technique (BGT*) transcendental methodology to manage soil as an arena of biodegradation and organic synthesis. A BGT*-based robotic system for intra-soil pulse continuous-discrete water and matter supply directly into the dispersed-aggregated physical structure of the soil media was developed. The system enables transformation of soil into a stable highly productive organic chemical bioreactor for better controlled nanoparticle biomolecular interactions and adsorption by biological and mineral media. The scattering matrix measurement unit is supposed to be used in the robotic system as a diagnostic tool for the dispersion composition of soil organic components.

Pyrolyzed biowastes deactivated potentially toxic metals and eliminated antibiotic resistant genes for healthy vegetable production

Potentially toxic metals (PTEs) and antibiotic resistance genes (ARGs) present in bio-wastes were the major environmental and health risks for soil use. If pyrolyzing bio-wastes into biochar could minimize such risks had not been elucidated. This study evaluated PTE pools, microbial and ARGs abundances of wheat straw (WS), swine manure (SM) and sewage sludge (SS) before and after pyrolysis, which were again tested for soil amendment at a 2% dosage in a pot experiment with a vegetable crop of pak choi (Brassica campestris L.). Pyrolysis led to PTEs concentration in biochars but reduced greatly their mobility, availability and migration potential, as revealed respectively by leaching, CaCl₂ extraction and risk assessment coding. In SM and SS after pyrolysis, gene abundance was removed by 4-5 orders for bacterial, by 2-3 orders for fungi and by 3-5 orders for total ARGs. With these material amended, PTEs available pool decreased by 25%-85% while all ARGs eliminated to background in the pot soil. Unlike a >50% yield decrease and a >30% quality decline with unpyrolyzed SM and SS, their biochars significantly increased biomass production and overall quality of pak choi grown in the amended soil. Comparatively, amendment of the biochars decreased plant PTEs content by 23-57% and greatly reduced health risk of pak choi, with total target hazard quotient values well below the guideline limit for subsistence diet by adult. Furthermore, biochar soil amendment enabled a synergic improvement on soil fertility, product quality, and biomass production as well as metal stabilization in the soil-plant system. Thus, biowastes pyrolysis and reuse in vegetable production could help build up a closed loop of production-waste-biochar-production, addressing not only circular economy but healthy food and climate nexus also and contributing to achieving the United Nations sustainable development goals.

Microbial biomass carbon and enzyme activities as influenced by tillage, crop rotation and residue management in a sweet sorghum cropping system in marginal soils of South Africa

Questions on sustainable and appropriate cropping systems for bioenergy sweet sorghum in the smallholder farming sector still exist. Therefore, a short-term experiment was carried out to study the influence of management on microbial biomass carbon (MBC), β-glucosidase, acid phosphatase, and urease activities in a sweet sorghum cropping system in South Africa. Tillage [no-till (NT) and conventional tillage (CT)], rotation [sorghum-vetch-sorghum (S-V-S) and sorghum-fallow-sorghum (S-F-S)] and residue retention [0%, 15% and 30%] were evaluated. Tillage× rotation× residue management interaction influenced (P < 0.05) MBC whilst crop rotation residue influenced (P < 0.05) β-glucosidase. Tillage affected β-glucosidase (P < 0.05), acid phosphatase (P < 0.001), and urease enzyme (P < 0.01) while crop rotation only influenced acid phosphatase (P < 0.01). Residue retention affected acid phosphatase (P < 0.001) and urease enzyme (P < 0.001). NT + S-V-S+30% interaction resulted in the highest MBC content compared to CT + S-F-S+0%. NT+30% enhanced β-glucosidase activity, S-V-S enhanced acid phosphatase compared to S-F-S. MBC and enzyme activities were positively correlated with each other. Tillage and residue management were the main factors influencing soil biological indicators under bioenergy sweet sorghum in South African marginal soils in the short-term. Soil biological indicators were higher under NT and 30% residue retention respectively. NT + S-V-S+30% was a better treatment combination to enhance soil quality under bioenergy sweet sorghum in South African marginal soils.

A Well-Being Approach to Soil Health—Insights from Aotearoa New Zealand

This paper explores the concept of soil health from a human well-being perspective in Aotearoa New Zealand. Globally, soils play an integral role in wider society and the environment by maintaining a large range of ecosystem services and benefits. As populations and resource constraints increase and food production and food security become growing issues globally, there is a recognition of the importance of defining soil condition or soil health for sustaining all ecosystems, including services and benefits to humans, plants, animals, and micro-organisms. While the ecosystem services approach has helped to illuminate the varied services soils provide, an understanding of the complex human–soil relationships and values has been missing. Those seeking to understand and form concepts about soil health have concentrated on the more inherent biochemical, physical and economic (e.g., productivity) aspects of soils, but not on the human, social or cultural dimensions. It is argued in this paper that soils form an integral part of our social and cultural fabric and are fundamentally important to human and societal well-being. The way humans interact with, value and use soil is a critical part of determining the health and sustainability of soil ecosystems. We discuss how a well-being approach can improve understanding of soil health with respect to societal goals and needs. We believe this type of approach, which includes social and cultural dimensions, provides a more diverse and inclusive knowledge base and perspective to better inform the development of integrative policy. This would lead to improved management and decision-making of land resources and soils in Aotearoa New Zealand and globally.

Developing stronger association between market value of coffee and functional biodiversity

Biodiverse coffee systems are often understood to compromise conventional commercial outcomes due to reduced yield quantity and quality. The article seeks to improve the understanding of association between functional biodiversity and coffee quality definitions to clarify synergy between biodiversity and market value, subsequently answering the question, can or does biodiversity maintain or increase the market value of coffee. The understanding is expected to improve how conventional, specialty and sustainability coffee markets encourage biodiverse coffee farms and farming landscapes. Literature related to definitions of coffee quality, associations with farm and farming landscape biodiversity and subsequent associations with market value demonstrate current explanations, assessments and understandings of coffee quality definitions and associations between coffee quality definitions, market value and biodiversity as available in scholarly literature. Stakeholder definitions of coffee quality vary and are valued differently according to market type. Biodiversity in a coffee farm can associate directly with different coffee quality definitions with subsequent influence on conventional, sustainability and specialty market values. The associations include harvest quality, determined by yield quantity and quality, and other coffee quality indicators. Detail in understanding of these associations can easily improve, particularly between coffee quality definitions already valued by specialty and sustainability markets and biodiverse coffee farms, compared to monoculture farms.

Chemical Soil-Biological Engineering Theoretical Foundations, Technical Means, and Technology for Safe Intrasoil Waste Recycling and Long-Term Higher Soil Productivity

The amelioration and remediation technology was developed on the basis of research of phosphogypsum and utilization in the Haplic Chernozem of South-European facies (Rostov Region). Phosphogypsum was utilized via dispersed application into a soil layer of 20-45 cm with intrasoil milling of this layer. The phosphogypsum utilization doses were 0, 10, 20, and 40 t ha^-1. The Pb analytical content in soil solution was studied in the model experiment. The soil solution Pb thermodynamic forms were calculated. The mathematical chemical-thermodynamic model ION-2 was developed to calculate the real soil solution (water extract) calcium-carbonate equilibrium (CCE) ion forms, considering the ion pair association. The associated ion pairs CaCO₃ ⁰, CaSO₄ ⁰, MgCO₃ ⁰, MgSO₄ ⁰, CaHCO₃ ⁺, MgHCO₃ ⁺, NaCO₃ ^-, NaSO₄ ^-, CaOH⁺, and MgOH⁺ were accounted for in soil solution equilibrium macroion form calculation. The procedure for the microelement ion [including heavy metals (HMs)] equilibrium concentration in the soil solution coefficient k _as calculation was proposed to account for the real soil solution CCE, macroions, and HM (including Pb) association. The Pb²⁺ ion in soil solution was mostly bound to associates PbOH⁺, Pb(OH)₂ ⁰, PbCO₃ ⁰, Pb(CO₃)₂ ^2-, and PbHCO₃ ⁺. The calculation of CCE and ion association in soil solution revealed 14.5-21.5 times HM passivation compared to HM water-soluble values. The calculated HM activity in the soil solution in the example of the Pb²⁺ ion was less than 4% after phosphogypsum application in the target amelioration layer of 20-45 cm. The studied phosphogypsum doses were substantiated as environmentally safe. This was because the real soil solution CCE provided HM ion form association and consequent passivation. The dry steppe soil remediation after phosphogypsum application was justified as highly probable. The intrasoil milling chemical soil-biological engineering technology was developed for simultaneous soil amelioration and remediation on the basis of the biogeosystem technique (BGT*) transcendental methodology. The BGT*-based technology was tested in the long-term field experiments and is capable of ensuring the priority geophysical micro- and macroaggregate structure via intrasoil milling and mixing of soil illuvial and transitional horizons. This helps synthesize soil multilevel architecture, providing intrasoil-dispersed environmentally safe recycling of wastes of different origin. Addressing the environment safety concerns, a new decision of the intrasoil milling device was proposed for phosphogypsum and other substance application to soil.

Mulching practices alter the bacterial-fungal community and network in favor of soil quality in a semiarid orchard system

The study aimed to investigate how mulching practices can improve soil quality by altering microbial community composition and the interrelations among its members. The experiment was conducted for 7 years (from 2012 to 2018) in an apple (Malus domestica cv. Fuji) orchard located on the Loess Plateau, China. Four treatments were applied: conventional tillage (CT), intercrop ryegrass (Lolium perenne L.) cover (RE), inter-row cornstalk mulch (CS), and black ground fabric mulch (BF). The results indicated that compared to CT treatment, all the three mulching practices significantly increased soil moisture content. The RE and CS treatments improved soil organic matter content by 11.8% and 36.5%, respectively, and CS treatment also increased available nitrogen content in soil by 42.0% compared with CT treatment. The soil environmental heterogeneity under different mulching practices shaped the microbial community structure and the dominant populations. All the mulching practices significantly increased the operational taxonomic unit (OTU) abundance and alpha diversity of fungi, and positively affected bacterial richness. Network analyses showed that the microbial structure was significantly affected by soil water and microbial biomass nitrogen. Interestingly, based on network correlation analysis among microorganisms, the BF treatment reduced competition between bacteria, whereas RE treatment increased their cooperation, however, the CS treatment not only promoted cooperation between fungi, but also increased correlations between fungi and bacteria. Finally, our results indicated that mulching practices not only increased the diversity of microorganisms and abundance of dominant species, but also promoted the interrelations among microorganisms in favor of soil quality.

Biochar—A Panacea for Agriculture or Just Carbon?

The sustainable production of food faces formidable challenges. Foremost is the availability of arable soils, which have been ravaged by the overuse of fertilizers and detrimental soil management techniques. The maintenance of soil quality and reclamation of marginal soils are urgent priorities. The use of biochar, a carbon-rich, porous material thought to improve various soil properties, is gaining interest. Biochar (BC) is produced through the thermochemical decomposition of organic matter in a process known as pyrolysis. Importantly, the source of organic material, or ‘feedstock’, used in this process and different parameters of pyrolysis determine the chemical and physical properties of biochar. The incorporation of BC impacts soil–water relations and soil health, and it has been shown to have an overall positive impact on crop yield; however, pre-existing physical, chemical, and biological soil properties influence the outcome. The effects of long-term field application of BC and how it influences the soil microcosm also need to be understood. This literature review, including a focused meta-analysis, summarizes the key outcomes of BC studies and identifies critical research areas for future investigations. This knowledge will facilitate the predictable enhancement of crop productivity and meaningful carbon sequestration.

Soil Microbial Communities in Corn Fields Treated with Atoxigenic Aspergillus flavus

Aspergillus flavus refers to a diverse group of saprophytic soil fungi that includes strains producing aflatoxins (toxigenic strains) in the kernels of corn (Zea mays L.) and other crops, causing pre-harvest and post-harvest aflatoxin contamination. Some A. flavus strains are atoxigenic, and the introduction of such strains into the crop environment helps reduce toxigenic aflatoxin contamination. Corn growers in Texas have used the product FourSure™, which contains four atoxigenic strains of A. flavus; however, effects on soil microbial communities associated with these applications are unknown. We compared soil fungal and bacterial communities in corn fields treated with FourSure™ to nearby untreated (control) corn fields in Texas during the summer of 2019. Analysis of soil microbial community structure showed that total fatty acid methyl esters (FAMEs), fungal, and bacterial populations were not significantly different (p = 0.31) between the FourSure™-treated and control fields, yet corn fields located in the northern counties had more (p < 0.05) Gram—bacteria, actinobacteria, and total bacteria than fields in the southernmost county. The Gram—bacteria and actinobacteria were positively correlated (p = 0.04; r = 0.48 and 0.49, respectively) with soil water content. Similar fungal and bacterial abundances between FourSure™-treated and control fields indicated that atoxigenic A. flavus had no negative effects on soil microbial communities.

BIOFERTILIZATION WITH CHLOROPHYTA AND CYANOPHYTA: AN ALTERNATIVE FOR ORGANIC FOOD PRODUCTION

Chlorophyta and Cyanophyta are photosynthetic organisms characterized by their biochemical plasticity, which has allowed them to develop in different environments and have a faster growth rate than plants. Depending on the species and environmental conditions, these organisms can produce nitrogenous enzymes, for atmospheric nitrogen fixation; phosphatases, that solubilize phosphorus; phytohormones, that promote plant growth; and hygroscopic polysaccharides, that prevent erosion and improve soil characteristics. In this sense, the aim of this review was to analyze the available information on the use of Chlorophyta and Cyanophyta as biofertilizers and their potential application in organic food production. Multiple studies and researches were found demonstrating the advantages of these microorganisms when being used to improve plants productivity, and also at the same time, leading to sustainable agriculture that is respectful to the environment. However, their high production cost has become a limiting factor for their commercialization.

The Effect of Increasing Topsoil Disturbance on Surface-Active Invertebrate Composition and Abundance under Grazing and Cropping Regimes on Vertisols in North-West New South Wales, Australia

Agricultural intensification practices involve varying degrees of disturbance to the soil ecosystem. This study evaluated six agricultural management regimes with increasing levels of topsoil disturbance, on the composition and abundance of surface-active invertebrates on Vertisols at a sub-catchment scale. Two grazing (native and introduced pastures), and four cropping (combining short and long fallow, with zero and conventional tillage) management regimes were examined. Surface-active invertebrates were collected seasonally with pitfall traps over 2 years (8 seasons), and identified to order, while ants (Formicidae) that comprised 47% of total invertebrates collected, were identified to genera. Season had a significant effect on ant abundance and number of genera recorded with higher abundance and twice the number of genera in summer than all other seasons. Ants, particularly Iridomyrmex, were mainly active in summer, while other invertebrates especially Coleoptera, were more active in winter. Surface-active invertebrates were 30% more abundant in grazing than cropping land use types. Native pasture, with little surface soil disturbance, recorded the highest number of invertebrates, mainly ants, compared to other agricultural management regimes. Coleoptera and Dermaptera were higher in abundance under conventional tillage compared with those agricultural management regimes that disturb the topsoil less. Optimizing surface-active invertebrate activity on Vertisols for most taxa will require reducing topsoil disturbance. However, the research findings also suggest that the impact of agricultural management regimes on invertebrate activity was difficult to predict with any certainty as the three main ant genera, and most abundant invertebrate collected, did not respond in a consistent manner.