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Madhav M, Blasdell KR, Trewin B, Paradkar PN, López-Denman AJ. Culex-Transmitted Diseases: Mechanisms, Impact, and Future Control Strategies using Wolbachia. Viruses 2024; 16:1134. [PMID: 39066296 PMCID: PMC11281716 DOI: 10.3390/v16071134] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2024] [Revised: 07/08/2024] [Accepted: 07/11/2024] [Indexed: 07/28/2024] Open
Abstract
Mosquitoes of the Culex genus are responsible for a large burden of zoonotic virus transmission globally. Collectively, they play a significant role in the transmission of medically significant diseases such as Japanese encephalitis virus and West Nile virus. Climate change, global trade, habitat transformation and increased urbanisation are leading to the establishment of Culex mosquitoes in new geographical regions. These novel mosquito incursions are intensifying concerns about the emergence of Culex-transmitted diseases and outbreaks in previously unaffected areas. New mosquito control methods are currently being developed and deployed globally. Understanding the complex interaction between pathogens and mosquitoes is essential for developing new control strategies for Culex species mosquitoes. This article reviews the role of Culex mosquitos as vectors of zoonotic disease, discussing the transmission of viruses across different species, and the potential use of Wolbachia technologies to control disease spread. By leveraging the insights gained from recent successful field trials of Wolbachia against Aedes-borne diseases, we comprehensively discuss the feasibility of using this technique to control Culex mosquitoes and the potential for the development of next generational Wolbachia-based control methods.
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Affiliation(s)
- Mukund Madhav
- Australian Centre for Disease Preparedness, CSIRO Health and Biosecurity, Geelong, VIC 3220, Australia
| | - Kim R. Blasdell
- Australian Centre for Disease Preparedness, CSIRO Health and Biosecurity, Geelong, VIC 3220, Australia
| | - Brendan Trewin
- CSIRO Health and Biosecurity, Dutton Park, Brisbane, QLD 4102, Australia
| | - Prasad N. Paradkar
- Australian Centre for Disease Preparedness, CSIRO Health and Biosecurity, Geelong, VIC 3220, Australia
| | - Adam J. López-Denman
- Australian Centre for Disease Preparedness, CSIRO Health and Biosecurity, Geelong, VIC 3220, Australia
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2
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Dawah HA, Abdullah MA, Ahmad SK, Turner J, Azari-Hamidian S. An overview of the mosquitoes of Saudi Arabia (Diptera: Culicidae), with updated keys to the adult females. Zootaxa 2023; 5394:1-76. [PMID: 38220993 DOI: 10.11646/zootaxa.5394.1.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Indexed: 01/16/2024]
Abstract
Despite the fact that mosquito-borne infections have considerable consequences for public health in Saudi Arabia, there is neither a thorough review of the species that occur in the country nor updated keys for the identification of the adult females. In this study, species accounts are given for 49 Saudi Arabian mosquito species, as well as Aedes albopictus (Skuse), which is not recorded in Saudi Arabia, but is medically important and is found in some countries of the Middle East and North Africa. Taxonomic notes provide additional information for certain taxa and/or aid their identification.
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Affiliation(s)
- Hassan A Dawah
- Centre for Environmental Research and Studies; Jazan University; P.O. Box 2095; Jazan; Kingdom of Saudi Arabia.
| | - Mohammed A Abdullah
- Department of Biology; College of Science; King Khalid University; PO Box 9004; Abha-61413; Kingdom of Saudi Arabia.
| | - Syed Kamran Ahmad
- Department of Plant Protection; Faculty of Agricultural Sciences; Aligarh Muslim University; Aligarh; India.
| | - James Turner
- National Museum of Wales; Department of Natural Sciences; Entomology Section; Cardiff; CF10 3NP; UK.
| | - Shahyad Azari-Hamidian
- Research Center of Health and Environment; School of Health; Guilan University of Medical Sciences; Rasht; Iran; Department of Medical Parasitology; Mycology and Entomology; School of Medicine; Guilan University of Medical Sciences; Rasht; Iran.
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3
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Paquette SJ, Simon AY, XIII A, Kobinger GP, Shahhosseini N. Medically Significant Vector-Borne Viral Diseases in Iran. Microorganisms 2023; 11:3006. [PMID: 38138150 PMCID: PMC10745727 DOI: 10.3390/microorganisms11123006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2023] [Revised: 12/06/2023] [Accepted: 12/13/2023] [Indexed: 12/24/2023] Open
Abstract
Vector-borne viral diseases (VBVDs) continue to pose a considerable public health risk to animals and humans globally. Vectors have integral roles in autochthonous circulation and dissemination of VBVDs worldwide. The interplay of agricultural activities, population expansion, urbanization, host/pathogen evolution, and climate change, all contribute to the continual flux in shaping the epidemiology of VBVDs. In recent decades, VBVDs, once endemic to particular countries, have expanded into new regions such as Iran and its neighbors, increasing the risk of outbreaks and other public health concerns. Both Iran and its neighboring countries are known to host a number of VBVDs that are endemic to these countries or newly circulating. The proximity of Iran to countries hosting regional diseases, along with increased global socioeconomic activities, e.g., international trade and travel, potentially increases the risk for introduction of new VBVDs into Iran. In this review, we examined the epidemiology of numerous VBVDs circulating in Iran, such as Chikungunya virus, Dengue virus, Sindbis virus, West Nile virus, Crimean-Congo hemorrhagic fever virus, Sandfly-borne phleboviruses, and Hantavirus, in relation to their vectors, specifically mosquitoes, ticks, sandflies, and rodents. In addition, we discussed the interplay of factors, e.g., urbanization and climate change on VBVD dissemination patterns and the consequent public health risks in Iran, highlighting the importance of a One Health approach to further surveil and to evolve mitigation strategies.
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Affiliation(s)
- Sarah-Jo Paquette
- Department of Biological Sciences, University of Lethbridge, Lethbridge, AB T1K 3M4, Canada;
| | - Ayo Yila Simon
- Department of Pathology and Laboratory Medicine, Faculty of Medicine, University of British Columbia, Vancouver, BC V6T 1Z4, Canada;
| | - Ara XIII
- Galveston National Laboratory, University of Texas Medical Branch, Galveston, TX 77555, USA; (A.X.); (G.P.K.)
| | - Gary P. Kobinger
- Galveston National Laboratory, University of Texas Medical Branch, Galveston, TX 77555, USA; (A.X.); (G.P.K.)
| | - Nariman Shahhosseini
- Department of Biological Sciences, University of Lethbridge, Lethbridge, AB T1K 3M4, Canada;
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Shahhosseini N, Paquette SJ, Kayedi MH, Abaei MR, Sedaghat MM. Genetic Characterization of Sandfly-Borne Viruses in Phlebotomine Sandflies in Iran. Microorganisms 2023; 11:2754. [PMID: 38004764 PMCID: PMC10673459 DOI: 10.3390/microorganisms11112754] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Revised: 10/25/2023] [Accepted: 11/09/2023] [Indexed: 11/26/2023] Open
Abstract
Phleboviruses are classified into two main groups: the sandfly fever group (transmitted by sandflies and mosquitoes) and the Uukuniemi group (transmitted by ticks). Old World sandfly-borne viruses (SBVs) are classified into four main serocomplexes; sandfly fever Naples viruses (SFNVs), sandfly fever Sicilian viruses (SFSVs), Karimabad viruses (KARVs), and Salehabad viruses (SALVs). This study addresses current knowledge gaps on SBVs in Iran by focusing on identification and molecular epidemiology. We used PCR to examine DNA/RNA extracts to identify sandfly species and evaluate for SBV presence. We identified five specimens positive for phleboviruses: one Ph. sergenti for Tehran virus (TEHV), one Ph. papatasi for SFSV, and two Ph. papatasi and one Ph. perfiliewi for KARV. A phylogenetic tree indicated that the TEHV isolate from this study formed a cluster with previous isolates of TEHV, Zerdali virus, and Fermo virus. Meanwhile, the identified SFSV isolate fell in lineage I and was grouped with previous isolates of SFSVs and Dashli virus in Iran. Finally, the KARV isolates from this study formed a monophyletic clade in a sister relationship with other viruses in KARV lineages I and II. This comprehensive study on SBVs in Iran provided new insights into the molecular epidemiology of TEHV, SFSVs and KARVs in this country.
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Affiliation(s)
- Nariman Shahhosseini
- Department of Biological Sciences, University of Lethbridge, Lethbridge, AB T1K 3M4, Canada;
| | - Sarah-Jo Paquette
- Department of Biological Sciences, University of Lethbridge, Lethbridge, AB T1K 3M4, Canada;
| | - Mohammad Hassan Kayedi
- Razi Herbal Medicines Research Center, Department of Parasitology and Mycology, School of Medicine, Lorestan University of Medical Sciences, Khorramabad 6814993165, Iran;
| | - Mohammad Reza Abaei
- Department of Medical Entomology and Vector Control, School of Public Health, Tehran University of Medical Sciences, Tehran 141556446, Iran;
| | - Mohammad Mehdi Sedaghat
- Department of Medical Entomology and Vector Control, School of Public Health, Tehran University of Medical Sciences, Tehran 141556446, Iran;
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Nikookar SH, Charkame A, Nezammahalleh A, Moradi-Asl E, Enayati A, Fazeli-Dinan M, Sedaghat MM, Zaim M. Entomological surveillance of invasive Aedes mosquitoes in Mazandaran Province, northern Iran from 2014 to 2020. Sci Rep 2023; 13:8683. [PMID: 37248286 PMCID: PMC10227060 DOI: 10.1038/s41598-023-35860-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2022] [Accepted: 05/24/2023] [Indexed: 05/31/2023] Open
Abstract
Mosquitoes are the most important vectors of serious infectious diseases in the world. Dengue, Zika, chikungunya and yellow fever are emerging and re-emerging infectious diseases, associated with the distribution of two key vectors i.e. Aedes aegypti and Aedes albopictus throughout the world including countries neighbouring Iran. Entomological surveillance was planned and performed monthly from May to December during 2014-2020 in selected counties of Mazandaran Province, North of Iran, by ovitrap, larval collection, hand catch and human baited trap. Overall, 4410 Aedes specimens including 2376 larvae (53.9%) and 2034 (46.1%) adults belonging to six species, namely Aedes vexans, Aedes geniculatus, Aedes caspius, Aedes echinus, Aedes pulcritarsis and Aedes flavescence were collected and morphologically identified. Over the seven years of surveillance, Ae. aegypti and Ae. albopictus were not found by any sampling method. Aedes vexans and Ae. geniculatus were the most abundant species, their populations peaked in October and November and was positively correlated with precipitation and relative humidity. Aedes flavescence was a new species record for the province. A flowchart for planning and implementation of invasive mosquito surveillance for provincial health authorities in the country is proposed. These surveillance efforts provide basic and timely information for the health system to act promptly on integrated and intensified surveillance and control programs should Ae. aegypti and Ae. albopictus detected in the province.
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Affiliation(s)
- Seyed Hassan Nikookar
- Health Sciences Research Center, Department of Medical Entomology and Vector Control, School of Public Health, Mazandaran University of Medical Sciences, Sari, Iran
| | - Ali Charkame
- Medical Entomology, Health Expert of the Health Deputy, Mazandaran University of Medical Sciences, Sari, Iran
| | - Asghar Nezammahalleh
- Medical Entomology, Health Expert of the Health Deputy, Mazandaran University of Medical Sciences, Sari, Iran
| | - Eslam Moradi-Asl
- Department of Public Health, School of Public Health, Ardabil University of Medical Sciences, Ardabil, Iran
| | - Ahmadali Enayati
- Head of Medical Entomology Department, School of Public Health and Health Sciences Research Center, Mazandaran University of Medical Sciences, Sari, Iran.
| | - Mahmoud Fazeli-Dinan
- Health Sciences Research Center, Department of Medical Entomology and Vector Control, School of Public Health, Mazandaran University of Medical Sciences, Sari, Iran.
| | - Mohammad Mehdi Sedaghat
- Department of Medical Entomology and Vector Control, School of Public Health, Tehran University of Medical Sciences, Tehran, Iran
| | - Morteza Zaim
- Affiliated Professor, Department of Medical Entomology and Vector Control, School of Public Health, Tehran University of Medical Sciences, Tehran, Iran
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Poudat A, Edalat H, Zaim M, Rezaei F, Salim Abadi Y, Basseri HR. Species Composition and Geographic Distribution of Culicinae Mosquitoes and Their Possible Infection with West Nile Virus in Hormozgan Province, Southern Iran. IRANIAN JOURNAL OF PUBLIC HEALTH 2023; 52:809-817. [PMID: 37551191 PMCID: PMC10404324 DOI: 10.18502/ijph.v52i4.12454] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/19/2021] [Accepted: 02/06/2022] [Indexed: 08/09/2023]
Abstract
Background West Nile virus (WNV) is a mosquito-borne virus that causes a febrile disease and may cause a fatal neurological illness in humans. We aimed to investigate the geographic distribution of Culicinae mosquitoes and their possible infection with WNV in Hormozgan Province, southern Iran. Methods Field studies were carried out from June 2017 to May 2019. Different mosquito sampling methods were used monthly to collect mosquitoes from 22 sites. The Real-Time PCR technique was used to detect the virus infection in the mosquitoes. Results Overall, 6165 mosquitoes were caught. The species were Culex theileri (33.25%), Cx. pipiens (20.45%), Cx. quinquefasciatus (10.51%), Aedes caspius (6.33%), Cx. tritaeniorhynchus (5.82%), Ae. vexans (4.10%), Cx. sinaiticus (3.62%), Cx. antennatus (3.29%), Culiseta longiareolata (2.81%), Cx. perexiguus (2.03%), Cs. subochrea (1.95%), Cx. mimeticus (1.49%), Cx. pusillus (1.38%), Cx. univittatus (1.27%), Cx. modestus (1.14%), and Cx. sitiens (0.57%). The molecular detection of virus infection in mosquitoes found to be negative for WNV. Conclusion The presence of many species of mosquito vectors and high population traffic increase the risk of disease transmission is very high. Therefore, the way to restrict WNV infection factors is increasing the knowledge for personal protection measures to prevent mosquito bites.
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Affiliation(s)
- Abbas Poudat
- Department of Medical Entomology and Vector Control, School of Public Health, International Campus, Tehran University of Medical Sciences, Tehran, Iran
- Infectious and Tropical Diseases Research Center, Hormozgan Health Institute, Hormozgan University of Medical Sciences, Bandar Abbas, Iran
| | - Hamideh Edalat
- Department of Medical Entomology and Vector Control, School of Public Health, Tehran University of Medical Sciences, Tehran, Iran
| | - Morteza Zaim
- Department of Medical Entomology and Vector Control, School of Public Health, Tehran University of Medical Sciences, Tehran, Iran
| | - Farhad Rezaei
- Department of Virology, School of Public Health, Tehran University of Medical Sciences, Tehran, Iran
| | - Yaser Salim Abadi
- Department of Health Services and Health Promotion, School of Health, Rafsanjan University of Medical Sciences, Rafsanjan, Iran
| | - Hamid Reza Basseri
- Department of Medical Entomology and Vector Control, School of Public Health, Tehran University of Medical Sciences, Tehran, Iran
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M’ghirbi Y, Mousson L, Moutailler S, Lecollinet S, Amaral R, Beck C, Aounallah H, Amara M, Chabchoub A, Rhim A, Failloux AB, Bouattour A. West Nile, Sindbis and Usutu Viruses: Evidence of Circulation in Mosquitoes and Horses in Tunisia. Pathogens 2023; 12:pathogens12030360. [PMID: 36986282 PMCID: PMC10056592 DOI: 10.3390/pathogens12030360] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Revised: 02/11/2023] [Accepted: 02/16/2023] [Indexed: 02/24/2023] Open
Abstract
Mosquito-borne diseases have a significant impact on humans and animals and this impact is exacerbated by environmental changes. However, in Tunisia, surveillance of the West Nile virus (WNV) is based solely on the surveillance of human neuroinvasive infections and no study has reported mosquito-borne viruses (MBVs), nor has there been any thorough serological investigation of anti-MBV antibodies in horses. This study therefore sought to investigate the presence of MBVs in Tunisia. Among tested mosquito pools, infections by WNV, Usutu virus (USUV), and Sindbis virus (SINV) were identified in Cx. perexiguus. The serosurvey showed that 146 of 369 surveyed horses were positive for flavivirus antibodies using the cELISA test. The microsphere immunoassay (MIA) showed that 74 of 104 flavivirus cELISA-positive horses were positive for WNV, 8 were positive for USUV, 7 were positive for undetermined flaviviruses, and 2 were positive for tick-borne encephalitis virus (TBEV). Virus neutralization tests and MIA results correlated well. This study is the first to report the detection of WNV, USUV and SINV in Cx. perexiguus in Tunisia. Besides, it has shown that there is a significant circulation of WNV and USUV among horses, which is likely to cause future sporadic outbreaks. An integrated arbovirus surveillance system that includes entomological surveillance as an early alert system is of major epidemiological importance.
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Affiliation(s)
- Youmna M’ghirbi
- Laboratoire Des Virus, Vecteurs et Hôtes (LR20IPT02), Institut Pasteur de Tunis, Université Tunis El Manar, Tunis 1002, Tunisia
- Correspondence: or
| | - Laurence Mousson
- Institut Pasteur, Department of Virology, Arboviruses and Insect Vectors, 25-28 Rue du Docteur Roux, 75724 Paris, France
| | - Sara Moutailler
- UMR BIPAR, Animal Health Laboratory, INRAE, ANSES, Ecole Nationale Vétérinaire d’Alfort, Université Paris-Est, 94704 Maisons-Alfort, France
| | - Sylvie Lecollinet
- ANSES, INRAE, Ecole Nationale Vétérinaire d’Alfort, UMR VIROLOGIE, Laboratoire de Santé Animale, 94700 Maisons-Alfort, France
| | - Rayane Amaral
- ANSES, INRAE, Ecole Nationale Vétérinaire d’Alfort, UMR VIROLOGIE, Laboratoire de Santé Animale, 94700 Maisons-Alfort, France
| | - Cécile Beck
- ANSES, INRAE, Ecole Nationale Vétérinaire d’Alfort, UMR VIROLOGIE, Laboratoire de Santé Animale, 94700 Maisons-Alfort, France
| | - Hajer Aounallah
- Laboratoire Des Virus, Vecteurs et Hôtes (LR20IPT02), Institut Pasteur de Tunis, Université Tunis El Manar, Tunis 1002, Tunisia
| | - Meriem Amara
- Laboratoire Des Virus, Vecteurs et Hôtes (LR20IPT02), Institut Pasteur de Tunis, Université Tunis El Manar, Tunis 1002, Tunisia
| | - Ahmed Chabchoub
- Laboratoire Des Virus, Vecteurs et Hôtes (LR20IPT02), Institut Pasteur de Tunis, Université Tunis El Manar, Tunis 1002, Tunisia
- National School of Veterinary Medicine, Sidi Thabet, University of Manouba, La Manouba 2010, Tunisia
| | - Adel Rhim
- Laboratoire Des Virus, Vecteurs et Hôtes (LR20IPT02), Institut Pasteur de Tunis, Université Tunis El Manar, Tunis 1002, Tunisia
| | - Anna-Bella Failloux
- Institut Pasteur, Department of Virology, Arboviruses and Insect Vectors, 25-28 Rue du Docteur Roux, 75724 Paris, France
| | - Ali Bouattour
- Laboratoire Des Virus, Vecteurs et Hôtes (LR20IPT02), Institut Pasteur de Tunis, Université Tunis El Manar, Tunis 1002, Tunisia
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8
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Shahhosseini N, Babuadze G(G, Wong G, Kobinger GP. Mutation Signatures and In Silico Docking of Novel SARS-CoV-2 Variants of Concern. Microorganisms 2021; 9:926. [PMID: 33925854 PMCID: PMC8146828 DOI: 10.3390/microorganisms9050926] [Citation(s) in RCA: 35] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Revised: 04/21/2021] [Accepted: 04/24/2021] [Indexed: 01/08/2023] Open
Abstract
One year since the first severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) was reported in China, several variants of concern (VOC) have appeared around the world, with some variants seeming to pose a greater thread to public health due to enhanced transmissibility or infectivity. This study provides a framework for molecular characterization of novel VOC and investigates the effect of mutations on the binding affinity of the receptor-binding domain (RBD) to human angiotensin-converting enzyme 2 (hACE2) using in silico approach. Notable nonsynonymous mutations in RBD of VOC include the E484K and K417N/T that can be seen in South African and Brazilian variants, and N501Y and D614G that can be seen in all VOC. Phylogenetic analyses demonstrated that although the UK-VOC and the BR-VOC fell in the clade GR, they have different mutation signatures, implying an independent evolutionary pathway. The same is true about SA-VOC and COH-VOC felling in clade GH, but different mutation signatures. Combining molecular interaction modeling and the free energy of binding (FEB) calculations for VOC, it can be assumed that the mutation N501Y has the highest binding affinity in RBD for all VOC, followed by E484K (only for BR-VOC), which favors the formation of a stable complex. However, mutations at the residue K417N/T are shown to reduce the binding affinity. Once vaccination has started, there will be selective pressure that would be in favor of the emergence of novel variants capable of escaping the immune system. Therefore, genomic surveillance should be enhanced to find and monitor new emerging SARS-CoV-2 variants before they become a public health concern.
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Affiliation(s)
- Nariman Shahhosseini
- Département de Microbiologie-Infectiologie et d’Immunologie, Université Laval, Québec City, QC G1V4G2, Canada; (G.W.); (G.P.K.)
| | - George (Giorgi) Babuadze
- Department of Biological Sciences, Sunnybrook Research Institute, University of Toronto, Toronto, ON M4N3M5, Canada;
| | - Gary Wong
- Département de Microbiologie-Infectiologie et d’Immunologie, Université Laval, Québec City, QC G1V4G2, Canada; (G.W.); (G.P.K.)
- Institut Pasteur of Shanghai, Chinese Academy of Sciences, Shanghai 200031, China
| | - Gary P. Kobinger
- Département de Microbiologie-Infectiologie et d’Immunologie, Université Laval, Québec City, QC G1V4G2, Canada; (G.W.); (G.P.K.)
- Department of Medical Microbiology, University of Manitoba, Winnipeg, MB R3E0J9, Canada
- Department of Immunology, University of Manitoba, Winnipeg, MB R3E0T5, Canada
- Department of Pathology and Laboratory Medicine, School of Medicine, University of Pennsylvania, Philadelphia, PA 19104-4238, USA
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9
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Shahhosseini N, Wong G, Kobinger GP, Chinikar S. SARS-CoV-2 spillover transmission due to recombination event. GENE REPORTS 2021; 23:101045. [PMID: 33615041 PMCID: PMC7884226 DOI: 10.1016/j.genrep.2021.101045] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2020] [Revised: 01/21/2021] [Accepted: 01/31/2021] [Indexed: 01/08/2023]
Abstract
In late 2019, a novel Coronavirus emerged in China. Perceiving the modulating factors of cross-species virus transmission is critical to elucidate the nature of virus emergence. Using bioinformatics tools, we analyzed the mapping of the SARS-CoV-2 genome, modeling of protein structure, and analyze the evolutionary origin of SARS-CoV-2, as well as potential recombination events. Phylogenetic tree analysis shows that SARS-CoV-2 has the closest evolutionary relationship with Bat-SL-CoV-2 (RaTG13) at the scale of the complete virus genome, and less similarity to Pangolin-CoV. However, the Receptor Binding Domain (RBD) of SARS-CoV-2 is almost identical to Pangolin-CoV at the aa level, suggesting that spillover transmission probably occurred directly from pangolins, but not bats. Further recombination analysis revealed the pathway for spillover transmission from Bat-SL-CoV-2 and Pangolin-CoV. Here, we provide evidence for recombination event between Bat-SL-CoV-2 and Pangolin-CoV that resulted in the emergence of SARS-CoV-2. Nevertheless, the role of mutations should be noted as another influencing factor in the continuing evolution and resurgence of novel SARS-CoV-2 variants.
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Affiliation(s)
- Nariman Shahhosseini
- Département de Microbiologie-Infectiologie et d'Immunologie, Université Laval, Québec City, Québec, Canada
| | - Gary Wong
- Département de Microbiologie-Infectiologie et d'Immunologie, Université Laval, Québec City, Québec, Canada.,Pasteur Institute of Shanghai, China
| | - Gary P Kobinger
- Département de Microbiologie-Infectiologie et d'Immunologie, Université Laval, Québec City, Québec, Canada.,Department of Medical Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada.,Department of Immunology, University of Manitoba, Winnipeg, Manitoba, Canada.,Department of Pathology and Laboratory Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA, USA
| | - Sadegh Chinikar
- Institute of Virology, University of Veterinary Medicine, Vienna, Austria.,Pasteur Institute of Tehran, Iran
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