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Sun P, Fan K, Jiang Y, Chu H, Chen Y, Wu Y. Accumulated temperature dictates the regional structural variation of prokaryotic periphyton at soil-water interface in paddy fields. WATER RESEARCH 2024; 265:122259. [PMID: 39154398 DOI: 10.1016/j.watres.2024.122259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Revised: 07/30/2024] [Accepted: 08/12/2024] [Indexed: 08/20/2024]
Abstract
As a pervasive microbial aggregate found at the water-soil interface in paddy fields, periphyton plays crucial roles in modulating nutrient biogeochemical cycling. Consequently, it effectively mitigates non-point source pollution due to its diverse composition. Despite its significance, the mechanisms governing periphyton diversity across different rice planting regions remain poorly understood. To bridge this gap, we investigated periphyton grown in 200 paddy fields spanning 25° of latitude. Initially, we analyzed local diversity and latitudinal variations in prokaryotic communities within paddy field periphyton, identifying 7 abundant taxa, 42 moderate taxa, and 39 rare taxa as the fundamental prokaryotic framework. Subsequently, to elucidate the mechanisms governing periphyton diversity across large scales, we constructed interaction models illustrating triangular relationships among local richness, assembly, and regional variation of prokaryotic subcommunities. Our findings suggest that accumulated temperature-driven environmental filtering partially influences the assembly process of prokaryotes, thereby impacting local species richness and ultimately governing regional structural variations in periphyton. Furthermore, we determined that a latitude of 39° represents the critical threshold maximizing local species richness of periphyton in paddy fields. This study advances our understanding of the factors shaping periphyton geo-imprints and provides valuable insights into predicting their responses to environmental changes, potentially influencing rice production outcomes.
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Affiliation(s)
- Pengfei Sun
- Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, No.298 Chuangyou Road, Nanjing 211135, China; School of Life Sciences, University of Warwick, Coventry CV4 7AL, UK; University of Chinese Academy of Sciences, No.188, Tianquan Road, Nanjing 211135, China
| | - Kunkun Fan
- Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, No.298 Chuangyou Road, Nanjing 211135, China; University of Chinese Academy of Sciences, No.188, Tianquan Road, Nanjing 211135, China
| | - Yuji Jiang
- Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, No.298 Chuangyou Road, Nanjing 211135, China; University of Chinese Academy of Sciences, No.188, Tianquan Road, Nanjing 211135, China
| | - Haiyan Chu
- Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, No.298 Chuangyou Road, Nanjing 211135, China; University of Chinese Academy of Sciences, No.188, Tianquan Road, Nanjing 211135, China
| | - Yin Chen
- School of Biosciences, The University of Birmingham, Birmingham B15 2TT, UK.
| | - Yonghong Wu
- Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, No.298 Chuangyou Road, Nanjing 211135, China; University of Chinese Academy of Sciences, No.188, Tianquan Road, Nanjing 211135, China.
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Zuo J, Xu L, Guo J, Xu S, Ma S, Jiang C, Yang D, Wang D, Zhuang X. Microbial community structure analyses and cultivable denitrifier isolation of Myriophyllum aquaticum constructed wetland under low C/N ratio. J Environ Sci (China) 2023; 127:30-41. [PMID: 36522062 DOI: 10.1016/j.jes.2022.04.010] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2022] [Revised: 04/01/2022] [Accepted: 04/02/2022] [Indexed: 06/17/2023]
Abstract
With the rapid expansion of livestock production, the amount of livestock wastewater accumulated rapidly. Lack of biodegradable organic matter makes denitrification of livestock wastewater after anaerobic digestion more difficult. In this study, Myriophyllum aquaticum constructed wetlands (CWs) with efficient nitrogen removal performance were established under different carbon/nitrogen (C/N) ratios. Analysis of community composition reveals the change of M. aquaticum CWs in microbial community structure with C/N ratios. The proportion of Proteobacteria which is one of the dominant phyla among denitrifier communities increased significantly under low C/N ratio conditions. Besides, to obtain cultivable denitrifier that could be added into CWs in situ, 33 strains belonging to phylum Proteobacteria were isolated from efficient M. aquaticum CWs, while the best-performing denitrification strain M3-1 was identified as Bacillus velezensis JT3-1 (GenBank No. CP032506.1). Redundancy analysis and quadratic models showed that C/N ratio had significant effects on disposal of nitrate (NO3--N) and the strains isolated could perform well in denitrification when C/N ratio is relatively low. In addition, they have relatively wide ranges of carbon sources, temperature and a high NO3- removal rate of 9.12 mg/(L·hr) at elevated concentrations of 800 mg/L nitrate. Thus, strains isolated from M. aquaticum CWs with low C/N ratio have a practical application value in the treatment of nitrate-containing wastewater. These denitrifying bacteria could be added to CWs to enhance nitrogen removal efficiency of CWs for livestock wastewater with low C/N ratio in the future.
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Affiliation(s)
- Jialiang Zuo
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; Sino-Danish Center, University of Chinese Academy of Sciences, Beijing 101408, China
| | - Lina Xu
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Jianlin Guo
- Ningxia Zhongke Jingke Testing Technology Company, Yinchuan 750000, China
| | - Shengjun Xu
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China.
| | - Shuanglong Ma
- College of Resources and Environmental Sciences, Henan Agricultural University, Zhengzhou 450002, China
| | - Cancan Jiang
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Dongmin Yang
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Danhua Wang
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
| | - Xuliang Zhuang
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China.
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Zhang R, Zhao Y, Liu J, Yang S, Jing L. The response of bacterial community to UVB was significantly different between immature periphyton and mature periphyton, but not for physiological indicators. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2022; 246:114185. [PMID: 36244171 DOI: 10.1016/j.ecoenv.2022.114185] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2022] [Revised: 09/22/2022] [Accepted: 10/10/2022] [Indexed: 06/16/2023]
Abstract
Periphyton has important ecological functions. It can even exist in environments with strong ultraviolet radiation. However, knowledge of periphyton under ultraviolet is limited, which limits the understanding and application of periphyton in environments with high ultraviolet radiation. In this study, immature periphyton (IMP) and mature periphyton (MP) under ultraviolet B (UVB) irradiation were investigated and compared in terms of physiological characteristics and bacterial community. Analysis of the physiological characteristics showed that the response patterns of IMP and MP to UVB were similar. IMP and MP could adapt to UVB of 1 W/m2 well. However, high-intensity UVB (2 and 3 W/m2) reduced the periphyton biomass, inhibited photosynthesis and antioxidant enzyme activity and caused severe lipid peroxidation in both IMP and MP. Integrated Biological Response (IBR) analysis and toxicological model fitting showed that the ED50 values of UVB for IMP and MP were 1.25 and 1.50 W/m2, respectively. 16 S rRNA gene analysis showed that in both IMP and MP, bacterial community composition, assembly and function were affected by UVB. In addition, the response of the bacterial community in IMP to UVB was stronger than that in MP. The diversity of the IMP community was inhibited by UVB, but that of the MP community was not. Proteobacteria and Deinococcus-Thermus are key microorganisms responsible for tolerance to UVB stress. Neutral community model fitting showed that both UVB and the development process caused the determinism of bacterial succession. However, UVB may weaken the deterministic process caused by development. Functional prediction showed that many metabolic functions of periphyton were inhibited by UVB in IMP and MP. However, UVB caused different changes (enhancement or inhibition) of some ecological functions in them. This study provides valuable information for understanding periphyton in environments with UVB radiation, which may be used to improve the application of periphyton in these environments.
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Affiliation(s)
- Run Zhang
- Key Laboratory of Pollution Control Chemistry and Environmental Functional Materials for Qinghai-Tibet Plateau of the National Ethnic Affairs Commission, School of Chemistry and Environment, Southwest Minzu University, Chengdu 610041, China; Key Laboratory of General Chemistry of the National Ethnic Affairs Commission, School of Chemistry and Environment, Southwest Minzu University, Chengdu 610041, China
| | - Yue Zhao
- Key Laboratory of Pollution Control Chemistry and Environmental Functional Materials for Qinghai-Tibet Plateau of the National Ethnic Affairs Commission, School of Chemistry and Environment, Southwest Minzu University, Chengdu 610041, China; Key Laboratory of General Chemistry of the National Ethnic Affairs Commission, School of Chemistry and Environment, Southwest Minzu University, Chengdu 610041, China
| | - Jia Liu
- Key Laboratory of Pollution Control Chemistry and Environmental Functional Materials for Qinghai-Tibet Plateau of the National Ethnic Affairs Commission, School of Chemistry and Environment, Southwest Minzu University, Chengdu 610041, China; Key Laboratory of General Chemistry of the National Ethnic Affairs Commission, School of Chemistry and Environment, Southwest Minzu University, Chengdu 610041, China
| | - Shengtao Yang
- Key Laboratory of Pollution Control Chemistry and Environmental Functional Materials for Qinghai-Tibet Plateau of the National Ethnic Affairs Commission, School of Chemistry and Environment, Southwest Minzu University, Chengdu 610041, China; Key Laboratory of General Chemistry of the National Ethnic Affairs Commission, School of Chemistry and Environment, Southwest Minzu University, Chengdu 610041, China
| | - Liandong Jing
- Key Laboratory of Pollution Control Chemistry and Environmental Functional Materials for Qinghai-Tibet Plateau of the National Ethnic Affairs Commission, School of Chemistry and Environment, Southwest Minzu University, Chengdu 610041, China; Key Laboratory of General Chemistry of the National Ethnic Affairs Commission, School of Chemistry and Environment, Southwest Minzu University, Chengdu 610041, China.
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Furey PC, Lee SS, Clemans DL. Substratum-associated microbiota. WATER ENVIRONMENT RESEARCH : A RESEARCH PUBLICATION OF THE WATER ENVIRONMENT FEDERATION 2020; 92:1629-1648. [PMID: 33463854 DOI: 10.1002/wer.1410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2020] [Revised: 07/13/2020] [Accepted: 07/14/2020] [Indexed: 06/12/2023]
Abstract
Highlights of new, interesting, and emerging research findings on substratum-associated microbiota covered from a survey of 2019 literature from primarily freshwaters provide insight into research trends of interest to the Water Environment Federation and others interested in benthic, aquatic environments. Coverage of topics on bottom-associated or attached algae and cyanobacteria, though not comprehensive, includes new methods, taxa new-to-science, nutrient dynamics, auto- and heterotrophic interactions, grazers, bioassessment, herbicides and other pollutants, metal contaminants, and nuisance, and bloom-forming and harmful algae. Coverage of bacteria, also not comprehensive, focuses on the ecology of benthic biofilms and microbial communities, along with the ecology of microbes like Caulobacter crescentus, Rhodobacter, and other freshwater microbial species. Bacterial topics covered also include metagenomics and metatranscriptomics, toxins and pollutants, bacterial pathogens and bacteriophages, and bacterial physiology. Readers may use this literature review to learn about or renew their interest in the recent advances and discoveries regarding substratum-associated microbiota. PRACTITIONER POINTS: This review of literature from 2019 on substratum-associated microbiota presents highlights of findings on algae, cyanobacteria, and bacteria from primarily freshwaters. Coverage of algae and cyanobacteria includes findings on new methods, taxa new to science, nutrient dynamics, auto- and heterotrophic interactions, grazers, bioassessment, herbicides and other pollutants, metal contaminants, and nuisance, bloom-forming and harmful algae. Coverage of bacteria includes findings on ecology of benthic biofilms and microbial communities, the ecology of microbes, metagenomics and metatranscriptomics, toxins and pollutants, bacterial pathogens and bacteriophages, and bacterial physiology. Highlights of new, noteworthy and emerging topics build on those from 2018 and will be of relevance to the Water Environment Federation and others interested in benthic, aquatic environments.
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Affiliation(s)
- Paula C Furey
- Department Biology, St. Catherine University, St. Paul, Minnesota, USA
| | - Sylvia S Lee
- Office of Research and Development, U.S. Environmental Protection Agency, Washington, District of Columbia, USA
| | - Daniel L Clemans
- Department of Biology, Eastern Michigan University, Ypsilanti, Michigan, USA
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Li JY, Deng KY, Cai SJ, Lu HL, Xu RK. Periphyton has the potential to increase phosphorus use efficiency in paddy fields. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 720:137711. [PMID: 32325605 DOI: 10.1016/j.scitotenv.2020.137711] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2019] [Revised: 02/24/2020] [Accepted: 03/02/2020] [Indexed: 06/11/2023]
Abstract
The phosphorus (P) supply is mismatched with rice demand in the early and late stages of rice growth, which primarily results in low P use efficiency and high environmental risk. In recent years, the use of the natural periphyton in nutrient regulation in paddy fields has attracted much research interest. However, a mechanistic understanding of the action of periphyton on P biogeochemical cycling during the pivotal stages of rice growth has received little attention. In this study, the influence of periphyton proliferation on the soil surface and its consequential decomposition on P migration and bioavailability were investigated in two paddy soils using two microcosm experiments. The results showed that periphyton rapidly accumulated fertilizer P when it proliferated on the soil surface under favorable light condition, which led to more fertilizer P being stored on the soil surface and less P being fixed by soil particles or transported via runoff into the water bodies. The decomposition of periphyton under unfavorable light condition not only increased soil soluble reactive P, but also increased the amount of easily available P species, such as labile P, AlP, FeP, and mobilized OP. Thus, periphyton colonizing the soil surface in the early stage of rice growth could act as a P sink and decrease the P environmental risk, and its decomposition in the late stage of rice growth could act as a P source and activator. Phosphorus bioavailability regulated by periphyton could be synchronous with rice needs. Thus, periphyton has the potential to increase P use efficiency in paddy fields.
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Affiliation(s)
- Jiu-Yu Li
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 21008, China.
| | - Kai-Ying Deng
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 21008, China
| | - Shu-Jie Cai
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 21008, China; College of Resources and Environment, University of Chinese Academy of Sciences, Beijing 10049, China
| | - Hai-Long Lu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 21008, China
| | - Ren-Kou Xu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 21008, China
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Chen X, Chen X, Zhao Y, Zhou H, Xiong X, Wu C. Effects of microplastic biofilms on nutrient cycling in simulated freshwater systems. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 719:137276. [PMID: 32114222 DOI: 10.1016/j.scitotenv.2020.137276] [Citation(s) in RCA: 90] [Impact Index Per Article: 22.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2019] [Revised: 01/23/2020] [Accepted: 02/11/2020] [Indexed: 05/07/2023]
Abstract
Microplastic surfaces could be colonized by microorganisms and form biofilms in aquatic ecosystem, which can participate in the nitrogen (N) and phosphorus (P) cycles. In this work, polypropylene squares were deployed in a pond for 30 days for microplastic biofilms colonization and then were transported to indoor microcosms at an environmental relevant level to study their effects on N and P cycling. Results showed that microplastic biofilms could accelerate ammonia and nitrite oxidation as well as denitrification. Presence of microplastic biofilms accumulated P temporarily and increased alkaline phosphatase activities (APA) in the system. Later in the experiment, disintegration of matured biofilms released N and P into the water. Mass balance calculation suggested possible N input caused by biological nitrogen fixation. Our results demonstrated that microplastics associated biofilms have the ability to alter the N and P cycling processes in aquatic system. However, additional works are required to further quantify the extent of such impact.
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Affiliation(s)
- Xianchuan Chen
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
| | - Xiaofei Chen
- Hubei Academy of Environmental Sciences, Wuhan 430072, China
| | - Yanhui Zhao
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; University of Chinese Academy of Sciences, Beijing 100039, China
| | - Hane Zhou
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; University of Chinese Academy of Sciences, Beijing 100039, China
| | - Xiong Xiong
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
| | - Chenxi Wu
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; University of Chinese Academy of Sciences, Beijing 100039, China.
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Stutter M, Wyness A, Watson H, Dodd N. Coupled macronutrient cycling in stream biofilms: Effects of stoichiometry, light and temperature. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 703:134880. [PMID: 31753493 DOI: 10.1016/j.scitotenv.2019.134880] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Revised: 10/04/2019] [Accepted: 10/06/2019] [Indexed: 06/10/2023]
Abstract
Stream biofilms have the capacity to modify the passage of macronutrients through catchments as they respond to nutrient compositions and ratios from different sources. Knowledge of coupled cycling of N, P and organic C in flowing freshwaters is essential to understanding and predicting aquatic ecosystems responses to environmental change comprising multiple chemical and physical stressors. Colonisation on nutrient diffusing substrates (glucose-C, inorganic NP, combined CNP and control applied in-situ in an oligotrophic, upland stream) led to biofilms differing in community and element compositions. The 72 biofilms were transferred to replicated recirculating water chambers (1 L volume) for 4-days where additional effects of light and temperature treatments were investigated on nutrient exchange with the water column. Chemical (nutrient analyses, 13C, 15N tracing, stoichiometry) and biological (chlorophyll, TRFLP) analyses were performed to understand the biofilm composition changes and interaction with the water column. Biofilms combining C with NP incorporated more N and P relative to controls than did those with NP alone. During the chamber phase C-treated biofilms resulted in lower water column N, P concentrations with CNP relative to NP treatments. The effects of the light and temperature were manifested mainly in impaired net nutrient uptake at temperature deviating from ambient stream temperatures. The effects of organic C on N, P cycling (and vice-versa) in mixed biofilms and their interaction with waters is a developing field. Combining in-stream and chamber tests has shown potential for studying in controlled and replicated systems such complex interactions.
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Affiliation(s)
- Marc Stutter
- The James Hutton Institute, Craigiebuckler, Aberdeen AB158QH, UK; Lancaster Environment Centre, Lancaster University, Lancaster LA14YQ, UK.
| | - Adam Wyness
- Sediment Ecology Research Group, Scottish Oceans Institute, School of Biology, University of St Andrews, KY16 8LB, UK; Coastal Research Group, Rhodes University, Grahamstown, South Africa
| | - Helen Watson
- The James Hutton Institute, Craigiebuckler, Aberdeen AB158QH, UK
| | - Nikki Dodd
- The James Hutton Institute, Craigiebuckler, Aberdeen AB158QH, UK
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