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For: Matsuoka S, Sugiyama Y, Sato H, Katano I, Harada K, Doi H. Spatial structure of fungal DNA assemblages revealed with eDNA metabarcoding in a forest river network in western Japan. MBMG 2019. [DOI: 10.3897/mbmg.3.36335] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
Number Cited by Other Article(s)
1
Pagani DM, Ventura SPR, Vu D, Mendes-Pereira T, Ribeiro Tomé LM, de Carvalho DS, Costa-Rezende DH, Kato RB, García GJY, Geml J, Robert V, They NH, Brenig B, Azevedo V, Scroferneker ML, Valente P, Góes-Neto A. Unveiling Fungal Community Structure along Different Levels of Anthropic Disturbance in a South American Subtropical Lagoon. J Fungi (Basel) 2023;9:890. [PMID: 37754998 PMCID: PMC10532596 DOI: 10.3390/jof9090890] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Revised: 08/19/2023] [Accepted: 08/29/2023] [Indexed: 09/28/2023]  Open
2
Čačković A, Kajan K, Selak L, Marković T, Brozičević A, Pjevac P, Orlić S. Hydrochemical and Seasonally Conditioned Changes of Microbial Communities in the Tufa-Forming Freshwater Network Ecosystem. mSphere 2023:e0060222. [PMID: 37097185 DOI: 10.1128/msphere.00602-22] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/26/2023]  Open
3
Masumoto S, Kitagawa R, Kaneko R, Nishizawa K, Matsuoka S, Uchida M, Mori AS. Discrepancies of fungi and plants in the pattern of beta-diversity with environmental gradient imply a comprehensive community assembly rule. FEMS Microbiol Ecol 2023;99:6965348. [PMID: 36581318 DOI: 10.1093/femsec/fiac157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Revised: 10/24/2022] [Accepted: 12/28/2022] [Indexed: 12/31/2022]  Open
4
Biderre‐Petit C, Charvy J, Bronner G, Chauvet M, Debroas D, Gardon H, Hennequin C, Jouan‐Dufournel I, Moné A, Monjot A, Ravet V, Vellet A, Lepère C. FreshOmics : a manually curated and standardized –omics database for investigating freshwater microbiomes. Mol Ecol Resour 2022;23:222-232. [DOI: 10.1111/1755-0998.13692] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Revised: 07/22/2022] [Accepted: 07/25/2022] [Indexed: 11/30/2022]
5
Matsuoka S, Sugiyama Y, Nagano M, Doi H. Influence of DNA extraction kits on freshwater fungal DNA metabarcoding. PeerJ 2022;10:e13477. [PMID: 35651749 PMCID: PMC9150701 DOI: 10.7717/peerj.13477] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Accepted: 05/01/2022] [Indexed: 01/17/2023]  Open
6
Tedersoo L, Bahram M, Zinger L, Nilsson RH, Kennedy PG, Yang T, Anslan S, Mikryukov V. Best practices in metabarcoding of fungi: From experimental design to results. Mol Ecol 2022;31:2769-2795. [PMID: 35395127 DOI: 10.1111/mec.16460] [Citation(s) in RCA: 45] [Impact Index Per Article: 22.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Revised: 02/07/2022] [Accepted: 03/30/2022] [Indexed: 02/06/2023]
7
Senanayake IC, Pem D, Rathnayaka AR, Wijesinghe SN, Tibpromma S, Wanasinghe DN, Phookamsak R, Kularathnage ND, Gomdola D, Harishchandra D, Dissanayake LS, Xiang MM, Ekanayaka AH, McKenzie EHC, Hyde KD, Zhang HX, Xie N. Predicting global numbers of teleomorphic ascomycetes. FUNGAL DIVERS 2022. [DOI: 10.1007/s13225-022-00498-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
8
Effectiveness assessment of using riverine water eDNA to simultaneously monitor the riverine and riparian biodiversity information. Sci Rep 2021;11:24241. [PMID: 34930992 PMCID: PMC8688430 DOI: 10.1038/s41598-021-03733-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Accepted: 12/09/2021] [Indexed: 11/09/2022]  Open
9
Masumoto S, Kitagawa R, Nishizawa K, Kaneko R, Osono T, Hasegawa M, Matsuoka S, Uchida M, Mori AS. Functionally explicit partitioning of plant β-diversity reveal soil fungal assembly in the subarctic tundra. FEMS Microbiol Ecol 2021;97:6366230. [PMID: 34494103 DOI: 10.1093/femsec/fiab129] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2021] [Accepted: 09/02/2021] [Indexed: 11/14/2022]  Open
10
Matsuoka S, Sugiyama Y, Shimono Y, Ushio M, Doi H. Evaluation of seasonal dynamics of fungal DNA assemblages in a flow-regulated stream in a restored forest using eDNA metabarcoding. Environ Microbiol 2021;23:4797-4806. [PMID: 34258854 DOI: 10.1111/1462-2920.15669] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2021] [Revised: 07/09/2021] [Accepted: 07/09/2021] [Indexed: 11/27/2022]
11
Uchida N, Kubota K, Aita S, Kazama S. Aquatic insect community structure revealed by eDNA metabarcoding derives indices for environmental assessment. PeerJ 2020;8:e9176. [PMID: 32566391 PMCID: PMC7293852 DOI: 10.7717/peerj.9176] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2019] [Accepted: 04/21/2020] [Indexed: 12/25/2022]  Open
12
Shirouzu T, Matsuoka S, Doi H, Nagata N, Ushio M, Hosaka K. Complementary molecular methods reveal comprehensive phylogenetic diversity integrating inconspicuous lineages of early-diverged wood-decaying mushrooms. Sci Rep 2020;10:3057. [PMID: 32080243 PMCID: PMC7033186 DOI: 10.1038/s41598-020-59620-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2019] [Accepted: 02/03/2020] [Indexed: 11/28/2022]  Open
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