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Meyer M, Melville DW, Baldwin HJ, Wilhelm K, Nkrumah EE, Badu EK, Oppong SK, Schwensow N, Stow A, Vallo P, Corman VM, Tschapka M, Drosten C, Sommer S. Bat species assemblage predicts coronavirus prevalence. Nat Commun 2024; 15:2887. [PMID: 38575573 PMCID: PMC10994947 DOI: 10.1038/s41467-024-46979-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Accepted: 03/15/2024] [Indexed: 04/06/2024] Open
Abstract
Anthropogenic disturbances and the subsequent loss of biodiversity are altering species abundances and communities. Since species vary in their pathogen competence, spatio-temporal changes in host assemblages may lead to changes in disease dynamics. We explore how longitudinal changes in bat species assemblages affect the disease dynamics of coronaviruses (CoVs) in more than 2300 cave-dwelling bats captured over two years from five caves in Ghana. This reveals uneven CoV infection patterns between closely related species, with the alpha-CoV 229E-like and SARS-related beta-CoV 2b emerging as multi-host pathogens. Prevalence and infection likelihood for both phylogenetically distinct CoVs is influenced by the abundance of competent species and naïve subadults. Broadly, bat species vary in CoV competence, and highly competent species are more common in less diverse communities, leading to increased CoV prevalence in less diverse bat assemblages. In line with the One Health framework, our work supports the notion that biodiversity conservation may be the most proactive measure to prevent the spread of pathogens with zoonotic potential.
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Affiliation(s)
- Magdalena Meyer
- Institute of Evolutionary Ecology and Conservation Genomics, Ulm University, Ulm, Germany.
| | - Dominik W Melville
- Institute of Evolutionary Ecology and Conservation Genomics, Ulm University, Ulm, Germany
| | - Heather J Baldwin
- Institute of Evolutionary Ecology and Conservation Genomics, Ulm University, Ulm, Germany
- School of Natural Sciences, Macquarie University, Sydney, New South Wales, Australia
| | - Kerstin Wilhelm
- Institute of Evolutionary Ecology and Conservation Genomics, Ulm University, Ulm, Germany
| | - Evans Ewald Nkrumah
- Department of Wildlife and Range Management, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana
| | - Ebenezer K Badu
- Department of Wildlife and Range Management, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana
| | - Samuel Kingsley Oppong
- Department of Wildlife and Range Management, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana
| | - Nina Schwensow
- Institute of Evolutionary Ecology and Conservation Genomics, Ulm University, Ulm, Germany
| | - Adam Stow
- School of Natural Sciences, Macquarie University, Sydney, New South Wales, Australia
| | - Peter Vallo
- Institute of Evolutionary Ecology and Conservation Genomics, Ulm University, Ulm, Germany
- Institute of Vertebrate Biology, Czech Academy of Sciences, Brno, Czech Republic
| | - Victor M Corman
- Charité - Universitätsmedizin Berlin Institute of Virology, Berlin, Germany
- German Center for Infection Research (DZIF), Berlin, Germany
| | - Marco Tschapka
- Institute of Evolutionary Ecology and Conservation Genomics, Ulm University, Ulm, Germany
| | - Christian Drosten
- Charité - Universitätsmedizin Berlin Institute of Virology, Berlin, Germany
- German Center for Infection Research (DZIF), Berlin, Germany
| | - Simone Sommer
- Institute of Evolutionary Ecology and Conservation Genomics, Ulm University, Ulm, Germany.
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Hand SJ, Archer M, Gillespie A, Myers T. Xenorhinos bhatnagari sp. nov., a new, nasal-emitting trident bat (Rhinonycteridae, Rhinolophoidea) from early Miocene forests in northern Australia. Anat Rec (Hoboken) 2023; 306:2693-2715. [PMID: 36995152 DOI: 10.1002/ar.25210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2022] [Revised: 02/28/2023] [Accepted: 03/06/2023] [Indexed: 03/31/2023]
Abstract
A new Old World trident bat (Rhinonycteridae) is described from an early Miocene cave deposit in the Riversleigh World Heritage Area, northwestern Queensland, Australia. Living rhinonycterids comprise a small family of insect-eating, nasal-emitting rhinolophoid bats from Africa, Madagascar, Seychelles, the Middle East, and northern Australia. The new fossil species is one of at least 12 rhinonycterid species known from the Oligo-Miocene cave deposits at Riversleigh. We refer the new species to the genus Xenorhinos (Hand, Journal of Vertebrate Paleontology, 18, 430-439, 1998a) because it shares a number of unusual cranial features with the type and only other species of the genus, X. halli, including a broad rostrum, very wide interorbital region, pronounced ventral flexion of the rostrum, very constricted sphenoidal bridge, and, within the nasal fossa, reduced bony division, and relatively well developed turbinals. Xenorhinos species lived in northern Australia during the global Miocene Climatic Optimum, in closed wet forests, unlike the drier habitats that trident bats largely inhabit today. Our phylogenetic analysis suggests that more than one dispersal event gave rise to the Australian rhinonycterid radiation, with two lineages having sister-group relationships with non-Australian taxa.
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Affiliation(s)
- Suzanne J Hand
- Earth and Sustainability Science Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales, 2052, Australia
| | - Michael Archer
- Earth and Sustainability Science Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales, 2052, Australia
| | - Anna Gillespie
- Earth and Sustainability Science Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales, 2052, Australia
| | - Troy Myers
- Earth and Sustainability Science Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, New South Wales, 2052, Australia
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Demos TC, Webala PW, Goodman SM, Kerbis Peterhans JC, Lutz HL, Agwanda BR, Cortés-Delgado N, Briones S, Ree RH, Patterson BD. Ultraconserved elements resolve phylogenetic relationships and biogeographic history of African-Malagasy bent-winged bats (Miniopterus). Mol Phylogenet Evol 2023; 188:107890. [PMID: 37517508 DOI: 10.1016/j.ympev.2023.107890] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Revised: 07/17/2023] [Accepted: 07/25/2023] [Indexed: 08/01/2023]
Abstract
African-Malagasy species of the bat genus Miniopterus are notable both for the dramatic increase in the number of newly recognized species over the last 15 years, as well as for the profusion of new taxa from Madagascar and the neighboring Comoros. Since 2007, seven new Malagasy Miniopterus species have been described compared to only two new species since 1936 from the Afrotropics. The conservative morphology of Miniopterus and limited geographic sampling in continental Africa have undoubtedly contributed to the deficit of continental species. In addition to uncertainty over species limits, phylogenetic relationships of Miniopterus remain mostly unresolved, particularly at deeper backbone nodes. Previous phylogenetic studies were based on limited taxon sampling and/or limited genetic sampling involving no more than five loci. Here, we conduct the first phylogenomic study of the Afrotropical Miniopteridae by analyzing up to 3772 genome-wide ultraconserved elements (UCEs) from historic and modern samples of 70 individuals from 25 Miniopterus species/lineages. We analyze multiple datasets of varying degrees of completeness (70, 90, and 100 percent complete) using partitioned concatenated maximum likelihood and multispecies coalescent methods. Our well-supported, species-level phylogenies resolved most (6/8 or 7/8) backbone nodes and strongly support for the first time the monophyly of the Malagasy radiation. We inferred the crown age of African Miniopteridae in the late Miocene (10.4 Ma), while the main lineages of Miniopterus appear to have contemporaneously diversified in two sister radiations in the Afrotropics and Madagascar. Species-level divergence of 23 of 25 African + Malagasy Miniopterus were estimated to have 95 % HPDs that overlap with the late Miocene (5.3-10.4 Ma). We present ancestral range estimates that unambiguously support a continental African radiation that originated in the Zambezian and Somalian/Ethiopian biogeographic regions, but we cannot rule out back colonization of Africa from Madagascar. The phylogeny indicates genetic support for up to seven new species.
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Affiliation(s)
- Terrence C Demos
- Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA.
| | - Paul W Webala
- Department of Forestry and Wildlife Management, Maasai Mara University, Narok, Kenya
| | - Steven M Goodman
- Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA; Association Vahatra, BP 3972, Antananarivo 101, Madagascar
| | - Julian C Kerbis Peterhans
- Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA; College of Arts & Sciences, Roosevelt University, Chicago, IL, USA
| | - Holly L Lutz
- Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA; Department of Immunology and Microbiology, Scripps Research Institute, La Jolla, CA, USA
| | | | - Natalia Cortés-Delgado
- Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA; Department of Biological Sciences, University of Illinois at Chicago, Chicago, IL, USA
| | - Stefania Briones
- Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA; Department of Biological Sciences, University of Illinois at Chicago, Chicago, IL, USA
| | - Richard H Ree
- Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA
| | - Bruce D Patterson
- Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA
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Dick CW, Verrett TB, Webala PW, Patterson BD. Nycteribiid bat flies (Arthropoda, Insecta, Diptera, Nycteribiidae) of Kenya. Zookeys 2023; 1169:65-85. [PMID: 38328029 PMCID: PMC10848833 DOI: 10.3897/zookeys.1169.102800] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Accepted: 06/11/2023] [Indexed: 02/09/2024] Open
Abstract
Bat flies (Diptera: Nycteribiidae and Streblidae) are hematophagous ectoparasites of bats characterized by viviparous pupiparity and generally high host specificity. Nycteribiid bat flies are wingless, morphologically constrained, and are most diverse in the Eastern Hemisphere. Africa hosts approximately 22% of global bat biodiversity and nearly one-third of all African bat species occur in Kenya, one of Africa's most bat-rich countries. However, records of nycteribiid bat fly diversity in Kenya remain sparse and unconsolidated. This paper combines all past species records of nycteribiid bat flies with records from a survey of 4,255 Kenyan bats across 157 localities between 2006 and 2015. A total of seven nycteribiid genera and 17 species are recorded, with seven species from the recent 'Bats of Kenya' surveys representing previously undocumented country records. Host associations and geographic distributions based on all available records are also described. This comprehensive species catalog addresses and further emphasizes the need for similar investigations of nycteribiid biodiversity across Africa.
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Affiliation(s)
- Carl W. Dick
- Department of Biology, Western Kentucky University, Bowling Green, KY 42101, USAWestern Kentucky UniversityBowling GreenUnited States of America
- Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL 60605, USAField Museum of Natural HistoryChicagoUnited States of America
| | - Taylor B. Verrett
- Department of Biology, Western Kentucky University, Bowling Green, KY 42101, USAWestern Kentucky UniversityBowling GreenUnited States of America
- Department of Biology, University of Oklahoma, Norman, OK 73019, USAUniversity of OklahomaNormanUnited States of America
| | - Paul W. Webala
- Department of Forestry and Wildlife Management, Maasai Mara University, Narok 20500, KenyaMaasai Mara UniversityNarokKenya
| | - Bruce D. Patterson
- Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL 60605, USAField Museum of Natural HistoryChicagoUnited States of America
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Laine VN, Sävilammi T, Wahlberg N, Meramo K, Ossa G, Johnson JS, Blomberg AS, Yeszhanov AB, Yung V, Paterson S, Lilley TM. Whole-genome Analysis Reveals Contrasting Relationships Among Nuclear and Mitochondrial Genomes Between Three Sympatric Bat Species. Genome Biol Evol 2022; 15:6955983. [PMID: 36546695 PMCID: PMC9825270 DOI: 10.1093/gbe/evac175] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Revised: 11/30/2022] [Accepted: 12/13/2022] [Indexed: 12/24/2022] Open
Abstract
Understanding mechanisms involved in speciation can be challenging, especially when hybridization or introgression blurs species boundaries. In bats, resolving relationships of some closely related groups has proved difficult due subtle interspecific variation both in morphometrics and molecular data sets. The endemic South American Histiotus bats, currently considered a subgenus of Eptesicus, harbor unresolved phylogenetic relationships and of those is a trio consisting of two closely related species: Eptesicus (Histiotus) macrotus and Eptesicus (Histiotus) montanus, and their relationship with a third, Eptesicus (Histiotus) magellanicus. The three sympatric species bear marked resemblance to each other, but can be differentiated morphologically. Furthermore, previous studies have been unable to differentiate the species from each other at a molecular level. In order to disentangle the phylogenetic relationships of these species, we examined the differentiation patterns and evolutionary history of the three Eptesicus (H.) species at the whole-genome level. The nuclear DNA statistics between the species suggest strong gene flow and recent hybridization between E. (H.) montanus and E. (H.) macrotus, whereas E. (H.) magellanicus shows a higher degree of isolation. In contrast, mitochondrial DNA shows a closer relationship between E. (H.) magellanicus and E. (H.) montanus. Opposing patterns in mtDNA and nuclear markers are often due to differences in dispersal, and here it could be both as a result of isolation in refugia during the last glacial maximum and female philopatry and male-biased dispersal. In conclusion, this study shows the importance of both the nuclear and mitochondrial DNA in resolving phylogenetic relationships and species histories.
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Affiliation(s)
- Veronika N Laine
- BatLab Finland, Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland
| | - Tiina Sävilammi
- Department of Biology, University of Turku, Turku, Finland,Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland
| | | | - Katarina Meramo
- BatLab Finland, Finnish Museum of Natural History, University of Helsinki, Helsinki, Finland
| | - Gonzalo Ossa
- ConserBat EIRL, San Fabian, Chile,Asociación Murciélagos de Chile Pinüike, Santiago, Chile
| | - Joseph S Johnson
- Department of Biological Sciences, University of Cincinnati, Cincinnati, Ohio, USA
| | | | - Aidyn B Yeszhanov
- Institute of Zoology of the Ministry of Science and Education of the Republic of Kazakhstan, Almaty, Kazakhstan
| | - Veronica Yung
- Departamento Laboratorio Biomédico, Instituto de Salud Pública de Chile, Santiago, Chile
| | - Steve Paterson
- Evolution, Ecology and Behaviour, Institute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool, UK
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Agosti D, Benichou L, Addink W, Arvanitidis C, Catapano T, Cochrane G, Dillen M, Döring M, Georgiev T, Gérard I, Groom Q, Kishor P, Kroh A, Kvaček J, Mergen P, Mietchen D, Pauperio J, Sautter G, Penev L. Recommendations for use of annotations and persistent identifiers in taxonomy and biodiversity publishing. RESEARCH IDEAS AND OUTCOMES 2022. [DOI: 10.3897/rio.8.e97374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The paper summarises many years of discussions and experience of biodiversity publishers, organisations, research projects and individual researchers, and proposes recommendations for implementation of persistent identifiers for article metadata, structural elements (sections, subsections, figures, tables, references, supplementary materials and others) and data specific to biodiversity (taxonomic treatments, treatment citations, taxon names, material citations, gene sequences, specimens, scientific collections) in taxonomy and biodiversity publishing. The paper proposes best practices on how identifiers should be used in the different cases and on how they can be minted, cited, and expressed in the backend article XML to facilitate conversion to and further re-use of the article content as FAIR data. The paper also discusses several specific routes for post-publication re-use of semantically enhanced content through large biodiversity data aggregators such as the Global Biodiversity Information Facility (GBIF), the International Nucleotide Sequence Database Collaboration (INSDC) and others, and proposes specifications of both identifiers and XML tags to be used for that purpose. A summary table provides an account and overview of the recommendations. The guidelines are supported with examples from the existing publishing practices.
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Verrett TB, Webala PW, Patterson BD, Dick CW. Remarkably low host specificity in the bat fly Penicillidia fulvida (Diptera: Nycteribiidae) as assessed by mitochondrial COI and nuclear 28S sequence data. Parasit Vectors 2022; 15:392. [PMID: 36303252 PMCID: PMC9607801 DOI: 10.1186/s13071-022-05516-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Accepted: 09/05/2022] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND The recognition and delineation of morphologically indistinguishable cryptic species can have broad implications for wildlife conservation, disease ecology and accurate estimates of biodiversity. Parasites are intriguing in the study of cryptic speciation because unique evolutionary pressures and diversifying factors are generated by ecological characteristics of host-parasite relationships, including host specificity. Bat flies (Diptera: Nycteribiidae and Streblidae) are obligate, hematophagous ectoparasites of bats that generally exhibit high host specificity. One rare exception is Penicillidia fulvida (Diptera: Nycteribiidae), an African bat fly found in association with many phylogenetically distant hosts. One explanation for P. fulvida's extreme polyxeny is that it may represent a complex of host-specific yet cryptic species, an increasingly common finding in molecular genetic studies of supposed generalist parasites. METHODS A total of 65 P. fulvida specimens were collected at 14 localities across Kenya, from bat species representing six bat families. Mitochondrial cytochrome c oxidase subunit 1 (COI) and nuclear 28S ribosomal RNA (rRNA) sequences were obtained from 59 specimens and used to construct Bayesian and maximum likelihood phylogenies. Analysis of molecular variance was used to determine how genetic variation in P. fulvida was allocated among host taxa. RESULTS The 28S rRNA sequences studied were invariant within P. fulvida. Some genetic structure was present in the COI sequence data, but this could be more parsimoniously explained by geography than host family. CONCLUSIONS Our results support the status of P. fulvida as a rare example of a single bat fly species with primary host associations spanning multiple bat families. Gene flow among P. fulvida utilizing different host species may be promoted by polyspecific roosting behavior in bats, and host preference may also be malleable based on bat assemblages occupying shared roosts. The proclivity of generalist parasites to switch hosts makes them more likely to vector or opportunistically transmit pathogens across host species boundaries. Consequently, the presence of polyxenous bat flies is an important consideration to disease ecology as bat flies become increasingly known to be associated with bat pathogens.
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Affiliation(s)
- Taylor B. Verrett
- grid.268184.10000 0001 2286 2224Department of Biology, Western Kentucky University, Bowling Green, KY 42101 USA
| | - Paul W. Webala
- grid.449040.d0000 0004 0460 0871Department of Forestry and Wildlife Management, Maasai Mara University, Narok, 20500 Kenya
| | - Bruce D. Patterson
- grid.299784.90000 0001 0476 8496Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL 60605 USA
| | - Carl W. Dick
- grid.268184.10000 0001 2286 2224Department of Biology, Western Kentucky University, Bowling Green, KY 42101 USA ,grid.299784.90000 0001 0476 8496Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL 60605 USA
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Chornelia A, Hughes AC. The evolutionary history and ancestral biogeographic range estimation of old-world Rhinolophidae and Hipposideridae (Chiroptera). BMC Ecol Evol 2022; 22:112. [PMID: 36192699 PMCID: PMC9528145 DOI: 10.1186/s12862-022-02066-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2022] [Accepted: 09/15/2022] [Indexed: 12/29/2022] Open
Abstract
BACKGROUND Family Rhinolophidae (horseshoe bats), Hipposideridae (leaf-nosed bats) and Rhinonycteridae (trident bats) are exclusively distributed in the Old-World, and their biogeography reflects the complex historic geological events throughout the Cenozoic. Here we investigated the origin of these families and unravel the conflicting family origin theories using a high resolution tree covering taxa from each zoogeographic realm from Africa to Australia. Ancestral range estimations were performed using a probabilistic approach implemented in BioGeoBEARS with subset analysis per biogeographic range [Old-World as whole, Australia-Oriental-Oceania (AOO) and Afrotropical-Madagascar-Palearctic (AMP)]. RESULT Our result supports an Oriental origin for Rhinolophidae, whereas Hipposideridae originated from the Oriental and African regions in concordance with fossil evidence of both families. The fossil evidence indicates that Hipposideridae has diversified across Eurasia and the Afro-Arabian region since the Middle Eocene. Meanwhile, Rhinonycteridae (the sister family of Hipposideridae) appears to have originated from the Africa region splitting from the common ancestor with Hipposideridae in Africa. Indomalaya is the center of origin of Rhinolophidae AOO lineages, and Indomalayan + Philippines appears to be center of origin of Hipposideridae AOO lineage indicating allopatric speciation and may have involved jump-dispersal (founder-event) speciation within AOO lineage. Wallacea and the Philippines may have been used as stepping stones for dispersal towards Oceania and Australia from the Oriental region. Multiple colonization events via different routes may have occurred in the Philippines (i.e., Palawan and Wallacea) since the Late Miocene. The colonization of Rhinolophidae towards Africa from Asia coincided with the estimated time of Tethys Ocean closure around the Oligocene to Miocene (around 27 Ma), allowing species to disperse via the Arabian Peninsula. Additionally, the number of potential cryptic species in Rhinolophidae in Southeast Asia may have increased since Plio-Pleistocene and late Miocene. CONCLUSION Overall, we conclude an Oriental origin for Rhinolophidae, and Oriental + African for Hipposideridae. The result demonstrates that complex historical events, in addition to species specific ecomorphology and specialization of ecological niches may shape current distributions.
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Affiliation(s)
- Ada Chornelia
- grid.9227.e0000000119573309Landscape Ecology Group, Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden (XTBG), Chinese Academy of Sciences, Yunnan, People’s Republic of China ,grid.410726.60000 0004 1797 8419International College, University of Chinese Academy of Sciences (UCAS), Huairou, Beijing, People’s Republic of China ,grid.194645.b0000000121742757School of Biological Sciences, University of Hong Kong, Pokfulam, Hong Kong SAR People’s Republic of China
| | - Alice Catherine Hughes
- grid.194645.b0000000121742757School of Biological Sciences, University of Hong Kong, Pokfulam, Hong Kong SAR People’s Republic of China
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Tanshi I, Obitte BC, Monadjem A, Rossiter SJ, Fisher‐Phelps M, Kingston T. Multiple dimensions of biodiversity in paleotropical hotspots reveal comparable bat diversity. Biotropica 2022. [DOI: 10.1111/btp.13143] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Iroro Tanshi
- Department of Biological Sciences Texas Tech University Lubbock Texas USA
- Department of Biology University of Washington Seattle Washington USA
- Department of Animal and Environmental Biology University of Benin Benin City Nigeria
- Small Mammal Conservation Organization Benin City Nigeria
| | - Benneth C. Obitte
- Department of Biological Sciences Texas Tech University Lubbock Texas USA
- Small Mammal Conservation Organization Benin City Nigeria
| | - Ara Monadjem
- Department of Biological Sciences University of Eswatini Kwaluseni Eswatini
- Department of Zoology & Entomology, Mammal Research Institute University of Pretoria Hatfield South Africa
| | - Stephen J. Rossiter
- School of Biological and Chemical Sciences Queen Mary University of London London UK
| | - Marina Fisher‐Phelps
- Department of Biological Sciences Texas Tech University Lubbock Texas USA
- National Audubon Society Dallas Texas USA
| | - Tigga Kingston
- Department of Biological Sciences Texas Tech University Lubbock Texas USA
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Brito JC, Sow AS, Vale CG, Pizzigalli C, Hamidou D, Gonçalves DV, Martínez-Freiría F, Santarém F, Rebelo H, Campos JC, Pleguezuelos JM, Ferreira da Silva MJ, Naia M, Tarroso P, Godinho R, Silva TL, Macedo T, Boratyński Z, Sidatt ZEA, Álvares F. Diversity, distribution and conservation of land mammals in Mauritania, North-West Africa. PLoS One 2022; 17:e0269870. [PMID: 35913972 PMCID: PMC9342785 DOI: 10.1371/journal.pone.0269870] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Accepted: 05/27/2022] [Indexed: 11/18/2022] Open
Abstract
Detailed knowledge about biodiversity distribution is critical for monitoring the biological effects of global change processes. Biodiversity knowledge gaps hamper the monitoring of conservation trends and they are especially evident in the desert biome. Mauritania constitutes a remarkable example on how remoteness and regional insecurity affect current knowledge gaps. Mammals remain one of the least studied groups in this country, without a concerted species checklist, the mapping of regions concentrating mammal diversity, or a national assessment of their conservation status. This work assessed the diversity, distribution, and conservation of land mammals in Mauritania. A total of 6,718 published and original observations were assembled in a spatial database and used to update the occurrence status, distribution area, and conservation status. The updated taxonomic list comprises 107 species, including 93 extant, 12 Regionally Extinct, and 2 Extinct in the Wild. Mapping of species distributions allowed locating concentrations of extant mammal species richness in coastal areas, along the Senegal River valley, and in mountain plateaus. Recent regional extinction of large-sized Artiodactyla and Carnivora has been very high (11% extinct species). From the extant mammals, 11% are threatened, including flagship species (e.g., Addax nasomaculatus and Panthera pardus). Species richness is poorly represented by the current protected areas. Despite the strong advances made, 23% of species categorise as Data Deficient. Persisting systematics and distribution uncertainties require further research. Field surveys in currently unexplored areas (northern and south-eastern regions) are urgently needed to increase knowledge about threatened mammals. The long-term conservation of land mammals in Mauritania is embedded in a complex web of socioeconomic and environmental factors that call for collaborative action and investment in sustainable human development. The current work sets the baseline for the future development of detailed research studies and to address the general challenges faced by mammals and biodiversity in the country.
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Affiliation(s)
- José Carlos Brito
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Vairão, Portugal
- Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Porto, Portugal
- * E-mail:
| | - Andack Saad Sow
- Green Sahel Expertise: Bureau d’Études Spécialise en Environnement, Nouakchott, R.I. Mauritanie
| | - Cândida Gomes Vale
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal
| | - Cristian Pizzigalli
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Vairão, Portugal
- Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Porto, Portugal
| | - Dieng Hamidou
- Faculté des Sciences et Techniques, Université des Sciences, de Technologie et de Médecine de Nouakchott, Nouakchott, R.I. Mauritanie
| | - Duarte Vasconcelos Gonçalves
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal
| | - Fernando Martínez-Freiría
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Vairão, Portugal
| | - Frederico Santarém
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Vairão, Portugal
| | - Hugo Rebelo
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Vairão, Portugal
| | - João Carlos Campos
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Vairão, Portugal
| | | | - Maria Joana Ferreira da Silva
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Vairão, Portugal
| | - Marisa Naia
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal
| | - Pedro Tarroso
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Vairão, Portugal
| | - Raquel Godinho
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Vairão, Portugal
- Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Porto, Portugal
- Department of Zoology, University of Johannesburg, Johannesburg, South Africa
| | - Teresa Luísa Silva
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal
| | - Tiago Macedo
- Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Porto, Portugal
| | - Zbyszek Boratyński
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Vairão, Portugal
| | | | - Francisco Álvares
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal
- BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Vairão, Portugal
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11
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Tanshi I, Obitte BC, Monadjem A, Kingston T. Hidden Afrotropical Bat Diversity in Nigeria: Ten New Country Records from a Biodiversity Hotspot. ACTA CHIROPTEROLOGICA 2022. [DOI: 10.3161/15081109acc2021.23.2.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Affiliation(s)
- Iroro Tanshi
- Department of Biological Sciences, Texas Tech University, 2901 Main St., 79409-3131, Lubbock, Texas, USA
| | - Benneth Chigozie Obitte
- Department of Biological Sciences, Texas Tech University, 2901 Main St., 79409-3131, Lubbock, Texas, USA
| | - Ara Monadjem
- All Out Africa Research Unit, Department of Biological Sciences, University of Eswatini, Private Bag 4, Kwaluseni, Eswantini
| | - Tigga Kingston
- Department of Biological Sciences, Texas Tech University, 2901 Main St., 79409-3131, Lubbock, Texas, USA
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12
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Chiropteran (Chiroptera; Mammalia) taxonomy in light of modern methods and approaches. RUSSIAN JOURNAL OF THERIOLOGY 2021. [DOI: 10.15298/rusjtheriol.20.2.01] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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13
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Sousa-Paula LCD, Pessoa FAC, Otranto D, Dantas-Torres F. Beyond taxonomy: species complexes in New World phlebotomine sand flies. MEDICAL AND VETERINARY ENTOMOLOGY 2021; 35:267-283. [PMID: 33480064 DOI: 10.1111/mve.12510] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2020] [Revised: 12/21/2020] [Accepted: 01/06/2021] [Indexed: 06/12/2023]
Abstract
A species complex (= species group, species series) is an assemblage of species, which are related morphologically and phylogenetically. Recent research has revealed several arthropod vector species that were believed to be a single nominal species actually representing a group of closely related species, which are sometimes morphologically indistinguishable at one or more developmental stages. In some instances, differences in terms of vector competence, capacity, or both have been recorded. It highlights the importance of detecting and studying species complexes to improve our understanding of pathogen transmission patterns, which may be vectored more or less efficiently by different species within the complex. Considering more than 540 species, about one-third of the phlebotomine sand flies in the New World present males and/or females morphologically indistinguishable to one or more species. Remarkably, several of these species may act in transmission of pathogenic agents. In this article, we review recent research on species complexes in phlebotomine sand flies from the Americas. Possible practical implications of recently acquired knowledge and future research needs are also discussed.
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Affiliation(s)
- L C de Sousa-Paula
- Laboratory of Immunoparasitology, Department of Immunology, Aggeu Magalhães Institute, Oswaldo Cruz Foundation (FIOCRUZ), Recife, Pernambuco, Brazil
| | - F A C Pessoa
- Laboratório de Ecologia e Doenças Transmissíveis na Amazônia, Leônidas e Maria Deane Institute, Oswaldo Cruz Foundation (FIOCRUZ), Manaus, Amazonas, Brazil
| | - D Otranto
- Parasitology Unit, Department of Veterinary Medicine, University of Bari, Valenzano, Italy
| | - F Dantas-Torres
- Laboratory of Immunoparasitology, Department of Immunology, Aggeu Magalhães Institute, Oswaldo Cruz Foundation (FIOCRUZ), Recife, Pernambuco, Brazil
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14
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Baldwin HJ, Vallo P, Ruiz AT, Anti P, Nkrumah EE, Badu EK, Oppong SK, Kalko EKV, Tschapka M, Stow AJ. Concordant patterns of genetic, acoustic, and morphological divergence in the West African Old World leaf‐nosed bats of the
Hipposideros caffer
complex. J ZOOL SYST EVOL RES 2021. [DOI: 10.1111/jzs.12506] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Heather J. Baldwin
- Institute of Evolutionary Ecology and Conservation Genomics Ulm University Ulm Germany
- Department of Biological Sciences Macquarie University Sydney NSW Australia
| | - Peter Vallo
- Institute of Evolutionary Ecology and Conservation Genomics Ulm University Ulm Germany
- Institute of Vertebrate Biology of the Czech Academy of Sciences Brno Czech Republic
| | - A. Tonatiuh Ruiz
- Institute of Neural Information Processing Ulm University Ulm Germany
| | - Priscilla Anti
- Department of Wildlife and Range Management Kwame Nkrumah University of Science and Technology Kumasi Ghana
| | - Evans E. Nkrumah
- Department of Wildlife and Range Management Kwame Nkrumah University of Science and Technology Kumasi Ghana
| | - Ebenezer K. Badu
- Department of Wildlife and Range Management Kwame Nkrumah University of Science and Technology Kumasi Ghana
| | - Samuel K. Oppong
- Department of Wildlife and Range Management Kwame Nkrumah University of Science and Technology Kumasi Ghana
| | - Elisabeth K. V. Kalko
- Institute of Evolutionary Ecology and Conservation Genomics Ulm University Ulm Germany
- Smithsonian Tropical Research Institute Balboa Panama
| | - Marco Tschapka
- Institute of Evolutionary Ecology and Conservation Genomics Ulm University Ulm Germany
- Smithsonian Tropical Research Institute Balboa Panama
| | - Adam J. Stow
- Department of Biological Sciences Macquarie University Sydney NSW Australia
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15
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Alumbaugh JL, Goodman SM, Samonds KE. Morphometric Analyses of Modern and Subfossil Macronycteris (Family Hipposideridae) Refine Groups from Anjohibe Cave, Northwestern Madagascar. ACTA CHIROPTEROLOGICA 2021. [DOI: 10.3161/15081109acc2021.23.1.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Affiliation(s)
- Jamie L. Alumbaugh
- Department of Geography, University of Tennessee, Knoxville, 1000 Phillip Fulmer Way, Knoxville, TN 37996, USA
| | - Steven M. Goodman
- Field Museum of Natural History, 1400 South Lake Shore Drive, Chicago, IL 60605, USA Association Vahatra, BP 3972, Antananarivo 101, Madagascar
| | - Karen E. Samonds
- Department of Biological Sciences, Northern Illinois University, 356 Montgomery Hall, DeKalb, IL 60115, USA
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16
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Decher J, Norris RW, Abedi-Lartey M, Oppong J, Hutterer R, Weinbrenner M, Koch M, Podsiadlowski L, Kilpatrick CW. A survey of small mammals in the Volta Region of Ghana with comments on zoogeography and conservation. ZOOSYSTEMA 2021. [DOI: 10.5252/zoosystema2021v43a14] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Jan Decher
- Mammal Section, Zoological Research Museum Alexander Koenig, Adenauerallee 160, 53113 Bonn (Germany) and Department of Biology, University of Vermont. Burlington, Vermont 05405 (USA)
| | - Ryan W. Norris
- Department of Evolution, Ecology and Organismal Biology, The Ohio State University at Lima, Lima, OH 45804 (USA)
| | - Michael Abedi-Lartey
- Golden Veroleum (Liberia) Inc., Monrovia Office: Unit 102, Wazni Building, 13th Street and Tubman Boulevard, Sinkor, Monrovia (Liberia)
| | - James Oppong
- Wildlife Division, Forestry Commission, P. O. Box M239, Accra (Ghana)
| | - Rainer Hutterer
- Mammal Section, Zoological Research Museum Alexander Koenig, Adenauerallee 160, 53113 Bonn (Germany)
| | | | - Martin Koch
- Department of Biogeography, University of Trier, Universitätsring 15, D-54296 Trier (Germany)
| | - Lars Podsiadlowski
- Mammal Section, Zoological Research Museum Alexander Koenig, Adenauerallee 160, 53113 Bonn (Germany)
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17
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Monadjem A, Demos TC, Dalton DL, Webala PW, Musila S, Kerbis Peterhans JC, Patterson BD. A revision of pipistrelle-like bats (Mammalia: Chiroptera: Vespertilionidae) in East Africa with the description of new genera and species. Zool J Linn Soc 2020. [DOI: 10.1093/zoolinnean/zlaa087] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Abstract
Vespertilionidae (class Mammalia) constitutes the largest family of bats, with ~500 described species. Nonetheless, the systematic relationships within this family are poorly known, especially among the pipistrelle-like bats of the tribes Vespertilionini and Pipistrellini. Perhaps as a result of their drab pelage and lack of obvious morphological characters, the genus and species limits of pipistrelle-like bats remain poorly resolved, particularly in Africa, where more than one-fifth of all vesper bat species occur. Further exacerbating the problem is the accelerating description of new species within these groups. In this study, we attempt to resolve the systematic relationships among the pipistrelle-like bats of sub-Saharan Africa and Madagascar and provide a more stable framework for future systematic efforts. Our systematic inferences are based on extensive genetic and morphological sampling of > 400 individuals covering all named genera and the majority of described African pipistrelle-like bat species, focusing on previously unstudied samples of East African bats. Our study corroborates previous work by identifying three African genera in Pipistrellini (Pipistrellus, Scotoecus and Vansonia), none of which is endemic to Africa. However, the situation is more complex in Vespertilionini. With broad taxonomic sampling, we confirm that the genus Neoromicia is paraphyletic, a situation that we resolve by assigning the species of Neoromicia to four genera. Neoromicia is here restricted to Neoromicia zuluensis and allied taxa. Some erstwhile Neoromicia species are transferred into an expanded Laephotis, which now includes both long-eared and short-eared forms. We also erect two new genera, one comprising a group of mostly forest-associated species (many of which have white wings) and the other for the genetically and morphologically unique banana bat. All four of these genera, as recognized here, are genetically distinct, have distinctive bacular morphologies and can be grouped by cranial morphometrics. We also demonstrate that the genus Nycticeinops, until now considered monospecific, includes both Afropipistrellus and the recently named Parahypsugo, thus representing the fifth African genus in Vespertilionini. A sixth genus, Hypsugo, is mostly extra-limital to sub-Saharan Africa. Finally, we describe three new species of pipistrelle-like bats from Kenya and Uganda, uncovered during the course of systematic bat surveys in the region. Such surveys are greatly needed across tropical Africa to uncover further bat diversity.
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Affiliation(s)
- Ara Monadjem
- Department of Biological Sciences, University of Eswatini, Kwaluseni, Eswatini
- Mammal Research Institute, Department of Zoology and Entomology, University of Pretoria, Hatfield, Pretoria, South Africa
- Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA
| | - Terrence C Demos
- Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA
| | - Desire L Dalton
- Department of Biological Sciences, University of Eswatini, Kwaluseni, Eswatini
- South African National Biodiversity Institute, Pretoria, South Africa
| | - Paul W Webala
- Department of Forestry and Wildlife Management, Maasai Mara University, Narok, Kenya
| | - Simon Musila
- Mammalogy Section, Zoology Department, National Museums of Kenya, Nairobi, Kenya
| | - Julian C Kerbis Peterhans
- Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA
- College of Arts & Sciences, Roosevelt University, 430 S Michigan, Chicago, IL, USA
| | - Bruce D Patterson
- Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA
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