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Sutovsky P, Hamilton LE, Zigo M, Ortiz D’Avila Assumpção ME, Jones A, Tirpak F, Agca Y, Kerns K, Sutovsky M. Biomarker-based human and animal sperm phenotyping: the good, the bad and the ugly†. Biol Reprod 2024; 110:1135-1156. [PMID: 38640912 PMCID: PMC11180624 DOI: 10.1093/biolre/ioae061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 03/28/2024] [Accepted: 04/17/2024] [Indexed: 04/21/2024] Open
Abstract
Conventional, brightfield-microscopic semen analysis provides important baseline information about sperm quality of an individual; however, it falls short of identifying subtle subcellular and molecular defects in cohorts of "bad," defective human and animal spermatozoa with seemingly normal phenotypes. To bridge this gap, it is desirable to increase the precision of andrological evaluation in humans and livestock animals by pursuing advanced biomarker-based imaging methods. This review, spiced up with occasional classic movie references but seriously scholastic at the same time, focuses mainly on the biomarkers of altered male germ cell proteostasis resulting in post-testicular carryovers of proteins associated with ubiquitin-proteasome system. Also addressed are sperm redox homeostasis, epididymal sperm maturation, sperm-seminal plasma interactions, and sperm surface glycosylation. Zinc ion homeostasis-associated biomarkers and sperm-borne components, including the elements of neurodegenerative pathways such as Huntington and Alzheimer disease, are discussed. Such spectrum of biomarkers, imaged by highly specific vital fluorescent molecular probes, lectins, and antibodies, reveals both obvious and subtle defects of sperm chromatin, deoxyribonucleic acid, and accessory structures of the sperm head and tail. Introduction of next-generation image-based flow cytometry into research and clinical andrology will soon enable the incorporation of machine and deep learning algorithms with the end point of developing simple, label-free methods for clinical diagnostics and high-throughput phenotyping of spermatozoa in humans and economically important livestock animals.
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Affiliation(s)
- Peter Sutovsky
- Division of Animal Sciences, University of Missouri, Columbia MO, USA
- Department of Obstetrics, Gynecology and Women’s Health, University of Missouri, Columbia MO, USA
| | - Lauren E Hamilton
- Division of Animal Sciences, University of Missouri, Columbia MO, USA
| | - Michal Zigo
- Division of Animal Sciences, University of Missouri, Columbia MO, USA
| | - Mayra E Ortiz D’Avila Assumpção
- Division of Animal Sciences, University of Missouri, Columbia MO, USA
- Department of Animal Reproduction, School of Veterinary Medicine and Animal Science, University of São Paulo, São Paulo, SP, Brazil
| | - Alexis Jones
- Division of Animal Sciences, University of Missouri, Columbia MO, USA
| | - Filip Tirpak
- Division of Animal Sciences, University of Missouri, Columbia MO, USA
| | - Yuksel Agca
- Department of Veterinary Pathobiology, College of Veterinary Medicine, University of Missouri, Columbia, MO, USA
| | - Karl Kerns
- Department of Animal Science, Iowa State University, Ames, IA, USA
| | - Miriam Sutovsky
- Division of Animal Sciences, University of Missouri, Columbia MO, USA
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2
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Oliveira CS, Camargo LSA, da Silva MVGB, Saraiva NZ, Quintão CC, Machado MA. Embryo biopsies for genomic selection in tropical dairy cattle. Anim Reprod 2023; 20:e20230064. [PMID: 37547565 PMCID: PMC10399131 DOI: 10.1590/1984-3143-ar2023-0064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2023] [Accepted: 06/21/2023] [Indexed: 08/08/2023] Open
Abstract
Genomic selection has transformed the livestock industry, enabling early-life selection of animals. Biopsy sampling of pre-implantation embryos has been described since 1968. However, it was only after 2010, with the advancement of molecular biology techniques such as whole genomic amplification and SNP Chips, that next-generation sequencing became commercially available for bovine embryos. It is now possible to make decisions about which embryos to transfer not only based on recipients' availability or embryo morphology but also on genomic estimates. This technology can be implemented for a wide spectrum of applications in livestock. In this review, we discuss the use of embryo biopsy for genomic selection and share our experience with Gir and Girolando Brazilian breeding programs, as well as future goals for implementing it in Brazilian bovine in vitro embryo production practices.
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3
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Miller S. Genomic selection in beef cattle creates additional opportunities for embryo technologies to meet industry needs. Reprod Fertil Dev 2022; 35:98-105. [PMID: 36592979 DOI: 10.1071/rd22233] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
Abstract
The use of genotype information to improve the predictability of Expected Progeny Difference was first implemented in American Angus cattle in 2009 and has now grown to where over 50% of all registered calves are genotyped. Animals with only a genotype now have genetic prediction accuracy equivalent to eight or more progeny records across all traits. Reproductive technologies have also been widely adopted with approximately 50% of all calves born being the result of artificial insemination. Non-surgical embryo transfer started increasing in the mid 1990s with just over 10% of calves born being the result of embryo transfer since 2005. The number of embryos created with in vitro technologies has risen sharply since 2015 and now accounts for close to 30% of all ET calves. Genomics has enabled embryo technologies to be more impactful, as females can be selected with greater accuracy and sires can be used at earlier ages with moderate accuracy. Large numbers of females genotyped each year also increases the number of selection candidates, increasing the selection intensity. Genomics, combined with increased recording, also provides more information on females. This increases the spread in the estimated index values of current dams, identifying more elite dams for selection as embryo donors. The greater scope of female selection also contributes to better inbreeding management. Commercial animals genotyped could be targeted for oocyte harvesting at slaughter, creating opportunities for low cost high value beef embryos to be used in the beef on dairy segment of the industry.
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Affiliation(s)
- Stephen Miller
- Animal Genetics and Breeding Unit, a joint venture of NSW Department of Primary Industries and the University of New England, University of New England, Armidale, NSW 2351, Australia
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4
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Lund TB, Gamborg C, Secher J, Sand E P. Danish dairy farmers' acceptance of and willingness to use semen from bulls produced by means of in vitro embryo production and genomic selection. J Dairy Sci 2021; 104:8023-8038. [PMID: 33934865 DOI: 10.3168/jds.2020-19210] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2020] [Accepted: 03/06/2021] [Indexed: 11/19/2022]
Abstract
A novel technology combining in vitro production and genomic embryo selection is currently under development in dairy cattle breeding. Adoption of this technology will probably accelerate genetic progress toward the main breeding goals of economic interest, as well as allow selection for traits of societal concern such as decreased methane emissions and improved animal welfare. However, dairy farmers, and especially organic farmers, could find the technology morally questionable and reject its use. This cross-sectional study surveyed Danish dairy farmers' general acceptance of the combined technology and their reported likelihood of using semen produced with it. Drawing on diffusion theory, a questionnaire was developed to examine the way farmers discover and communicate about new technological breeding options, and to measure the factors which predict acceptance and likelihood of adopting the technology. The questionnaire was sent to a randomly selected sample of organic and conventional dairy farmers in Denmark, and 85 organic and 71 conventional farmers (41% response rate) completed it. Seventy-six percent of farmers reported that they would be likely to use semen from bulls derived from the technology. A majority (61%) also found the technology acceptable, but many (33%) were unsure or undecided. Most farmers saw the technology as beneficial, but ethical reservations were aired by around a fifth of the farmers. There were no differences between organic and conventional farmers in likelihood of using, perceived utility, and ethical reservations about the technology. Self-reported idealistic organic farmers showed lower acceptance of the technology, but reported similar likelihood of using semen produced by it. Young farmers (20-39 yr) exhibited higher acceptance of the technology. Larger producers (in terms of number of cows) were more likely to report that they will use and accept the technology. We conclude that it is likely that semen from the technology combining in vitro production and genomic selection would be widely used by both organic and conventional farmers provided that costs can be kept low, and that there are advantages in terms of achieving breeding goals. Structural developments, growth in size of dairy farms, acceptance by young farmers, and the fact that economic incentives (and even ethical arguments) seem to favor the technology all point to this conclusion.
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Affiliation(s)
- T B Lund
- Department of Food and Resource Economics, University of Copenhagen, Frederiksberg C 1958, Denmark.
| | - C Gamborg
- Department of Food and Resource Economics, University of Copenhagen, Frederiksberg C 1958, Denmark
| | - J Secher
- Department of Veterinary Clinical Sciences, University of Copenhagen, Frederiksberg C 1870, Denmark
| | - P Sand E
- Department of Food and Resource Economics, University of Copenhagen, Frederiksberg C 1958, Denmark; Department of Veterinary and Animal Sciences, University of Copenhagen, Frederiksberg C 1870, Denmark
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5
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Umer S, Sammad A, Zou H, Khan A, Weldegebriall Sahlu B, Hao H, Zhao X, Wang Y, Zhao S, Zhu H. Regulation of AMH, AMHR-II, and BMPs (2,6) Genes of Bovine Granulosa Cells Treated with Exogenous FSH and Their Association with Protein Hormones. Genes (Basel) 2019; 10:E1038. [PMID: 31842416 PMCID: PMC6947534 DOI: 10.3390/genes10121038] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2019] [Revised: 12/06/2019] [Accepted: 12/10/2019] [Indexed: 12/14/2022] Open
Abstract
Anti-Mullerian hormone (AMH) is an important reproductive marker of ovarian reserve produced by granulosa cells (GCs) of pre-antral and early-antral ovarian follicles in several species, including cattle. This hormone plays a vital role during the recruitment of primordial follicles and follicle stimulating hormone (FSH)-dependent follicular growth. However, the regulatory mechanism of AMH expression in follicles is still unclear. In this study, we compared the expression of AMH, AMHR-II, BMP2, BMP6, FSHR, and LHCGR genes during follicular development. In-vitro expression study was performed with and without FSH for AMH, AMHR-II, BMP2, and BMP6 genes in bovine GCs which were isolated from 3-8 mm follicles. Association among the mRNA expression and hormone level was estimated. GCs were collected from small (3-8 mm), medium (9-12 mm) and large size (13 to 24 mm) follicles before, during onset, and after deviation, respectively. Further, mRNA expression, hormones (AMH, FSH, and LH), apoptosis of GCs, and cell viability were detected by qRT-PCR, ELISA, flow cytometry, and spectrophotometry. AMH, AMHR-II, BMP2, and FSHR genes were highly expressed in small and medium follicles as compared to large ones. In addition, the highest level of AMH protein (84.14 ± 5.41 ng/mL) was found in medium-size follicles. Lower doses of FSH increased the viability of bovine GCs while higher doses repressed them. In-vitro cultured GCs treated with FSH significantly increased the AMH, AMHR-II, and BMP2 expression levels at lower doses, while expression levels decreased at higher doses. We found an optimum level of FSH (25 ng/mL) which can significantly enhance AMH and BMP2 abundance (p < 0.05). In summary, AMH, AMHR-II, and BMP2 genes showed a higher expression in follicles developed in the presence of FSH. However, lower doses of FSH demonstrated a stimulatory effect on AMH and BMP2 expression, while expression started to decline at the maximum dose. In this study, we have provided a better understanding of the mechanisms regulating AMH, AMHR II, and BMP2 signaling in GCs during folliculogenesis, which would improve the outcomes of conventional assisted reproductive technologies (ARTs), such as superovulation and oestrus synchronization in bovines.
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MESH Headings
- Animals
- Anti-Mullerian Hormone/genetics
- Anti-Mullerian Hormone/metabolism
- Bone Morphogenetic Proteins/genetics
- Bone Morphogenetic Proteins/metabolism
- Cattle/genetics
- Estradiol/metabolism
- Female
- Follicle Stimulating Hormone/genetics
- Follicular Fluid/metabolism
- Gene Expression Regulation/genetics
- Gene Expression Regulation, Developmental/genetics
- Granulosa Cells/metabolism
- Ovarian Follicle/metabolism
- RNA, Messenger/genetics
- Receptors, FSH/genetics
- Receptors, FSH/metabolism
- Receptors, LH/genetics
- Receptors, LH/metabolism
- Receptors, Peptide/genetics
- Receptors, Peptide/metabolism
- Receptors, Transforming Growth Factor beta/genetics
- Receptors, Transforming Growth Factor beta/metabolism
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Affiliation(s)
- Saqib Umer
- Embryo Biotechnology and Reproduction Laboratory, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China; (S.U.); (H.Z.); (B.W.S.); (H.H.); (X.Z.); (S.Z.)
| | - Abdul Sammad
- Key Laboratory of Animal Genetics, Breeding and Reproduction, CAST, China Agricultural University, Beijing 100193, China; (A.S.); (A.K.); (Y.W.)
| | - Huiying Zou
- Embryo Biotechnology and Reproduction Laboratory, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China; (S.U.); (H.Z.); (B.W.S.); (H.H.); (X.Z.); (S.Z.)
| | - Adnan Khan
- Key Laboratory of Animal Genetics, Breeding and Reproduction, CAST, China Agricultural University, Beijing 100193, China; (A.S.); (A.K.); (Y.W.)
| | - Bahlibi Weldegebriall Sahlu
- Embryo Biotechnology and Reproduction Laboratory, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China; (S.U.); (H.Z.); (B.W.S.); (H.H.); (X.Z.); (S.Z.)
| | - Haisheng Hao
- Embryo Biotechnology and Reproduction Laboratory, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China; (S.U.); (H.Z.); (B.W.S.); (H.H.); (X.Z.); (S.Z.)
| | - Xueming Zhao
- Embryo Biotechnology and Reproduction Laboratory, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China; (S.U.); (H.Z.); (B.W.S.); (H.H.); (X.Z.); (S.Z.)
| | - Yachun Wang
- Key Laboratory of Animal Genetics, Breeding and Reproduction, CAST, China Agricultural University, Beijing 100193, China; (A.S.); (A.K.); (Y.W.)
| | - Shanjiang Zhao
- Embryo Biotechnology and Reproduction Laboratory, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China; (S.U.); (H.Z.); (B.W.S.); (H.H.); (X.Z.); (S.Z.)
| | - Huabin Zhu
- Embryo Biotechnology and Reproduction Laboratory, Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China; (S.U.); (H.Z.); (B.W.S.); (H.H.); (X.Z.); (S.Z.)
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6
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Fujii T, Naito A, Hirayama H, Kashima M, Yoshino H, Hanamure T, Domon Y, Hayakawa H, Watanabe T, Moriyasu S, Kageyama S. Potential of preimplantation genomic selection for carcass traits in Japanese Black cattle. J Reprod Dev 2019; 65:251-258. [PMID: 30905888 PMCID: PMC6584181 DOI: 10.1262/jrd.2019-009] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Abstract
Preimplantation genomic selection using genomic estimated breeding values (GEBVs) based on single nucleotide polymorphism (SNP) genotypes is expected to accelerate genetic improvement in
cattle. To develop a preimplantation genomic selection system for carcass traits in Japanese Black cattle, we investigated the accuracy of genomic evaluation of carcass traits using biopsied
embryonic cells (Experiment 1); we also performed an empirical evaluation for embryo transfer (ET) of vitrified GEBV-evaluated blastocysts to assess the efficiency of the preimplantation
genomic selection system (Experiment 2). In Experiment 1, the mean call rate for SNP genotyping using approximately 15 biopsied cells was 98.1 ± 0.3%, whereas that for approximately 5
biopsied cells was 91.5 ± 2.4%. The mean concordance rate for called genotypes between ~15-cell biopsies and the corresponding biopsied embryos was 99.9 ± 0.02%. The GEBVs for carcass
weight, ribeye area, and marbling score calculated from ~15-cell biopsies closely matched those from the corresponding calves produced by ET. In Experiment 2, a total of 208 in
vivo blastocysts were biopsied (~15-cell) and the biopsied cells were processed for SNP genotyping, where 88.5% of the samples were found to be suitable for GEBV calculation.
Large variations in GEBVs for carcass traits were observed among full-sib embryos and, among the embryos, some presented higher GEBVs for ribeye area and marbling score than their parents.
The conception rate following ET of vitrified GEBV-evaluated blastocysts was 41.9% (13/31). These findings suggest the possible application of preimplantation genomic selection for carcass
traits in Japanese Black cattle.
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Affiliation(s)
- Takashi Fujii
- Animal Research Center, Hokkaido Research Organization, Hokkaido 081-0038, Japan
| | - Akira Naito
- Animal Research Center, Hokkaido Research Organization, Hokkaido 081-0038, Japan
| | - Hiroki Hirayama
- Department of Northern Biosphere Agriculture, Faculty of Bioindustry, Tokyo University of Agriculture, Hokkaido 099-2493, Japan
| | - Masashi Kashima
- Animal Research Center, Hokkaido Research Organization, Hokkaido 081-0038, Japan
| | - Hitomi Yoshino
- Animal Research Center, Hokkaido Research Organization, Hokkaido 081-0038, Japan
| | | | - Yukio Domon
- Genetics Hokkaido Association, Hokkaido 089-0103, Japan
| | | | - Toshio Watanabe
- Japan Livestock Technology Association, Tokyo 113-0034, Japan.,Present: Livestock Improvement Association Japan, Maebashi Institute of Animal Science, Gunma 371-0121, Japan
| | - Satoru Moriyasu
- Animal Research Center, Hokkaido Research Organization, Hokkaido 081-0038, Japan
| | - Soichi Kageyama
- Animal Research Center, Hokkaido Research Organization, Hokkaido 081-0038, Japan
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7
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Turner KJ, Silvestri G, Black DH, Dobson G, Smith C, Handyside AH, Sinclair KD, Griffin DK. Karyomapping for simultaneous genomic evaluation and aneuploidy screening of preimplantation bovine embryos: The first live-born calves. Theriogenology 2018; 125:249-258. [PMID: 30476758 DOI: 10.1016/j.theriogenology.2018.11.014] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2018] [Revised: 11/07/2018] [Accepted: 11/15/2018] [Indexed: 12/18/2022]
Abstract
In cattle breeding, the development of genomic selection strategies based on single nucleotide polymorphism (SNP) interrogation has led to improved rates of genetic gain. Additionally, the application of genomic selection to in-vitro produced (IVP) embryos is expected to bring further benefits thanks to the ability to test a greater number of individuals before establishing a pregnancy and to ensure only carriers of desirable traits are born. However, aneuploidy, a leading cause of developmental arrest, is known to be common in IVP embryos. Karyomapping is a comprehensive screening test based on SNP typing that can be used for simultaneous genomic selection and aneuploidy detection, offering the potential to maximize pregnancy rates. Moreover, Karyomapping can be used to characterize the frequency and parental origin of aneuploidy in bovine IVP embryos, which have remained underexplored to date. Here, we report the use of Karyomapping to characterize the frequency and parental origin of aneuploidy in IVP bovine embryos in order to establish an estimate of total aneuploidy rates in each parental germline. We report an estimate of genome wide recombination rate in cattle and demonstrate, for the first time, a proof of principle for the application of Karyomapping to cattle breeding, with the birth of five calves after screening. This combined genomic selection and aneuploidy screening approach was highly reliable, with calves showing 98% concordance with their respective embryo biopsies for SNP typing and 100% concordance with their respective biopsies for aneuploidy screening. This approach has the potential to simultaneously improve pregnancy rates following embryo transfer and the rate of genetic gain in cattle breeding, and is applicable to basic research to investigate meiosis and aneuploidy.
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Affiliation(s)
- Kara J Turner
- School of Biosciences, University of Kent, Canterbury, Kent, CT2 7NH, UK; School of Human and Life Sciences, Canterbury Christ Church University, Canterbury, CT1 1QU, UK
| | - Giuseppe Silvestri
- School of Biosciences, University of Kent, Canterbury, Kent, CT2 7NH, UK
| | - David H Black
- Paragon Veterinary Group, Townhead Road, Dalston, Carlisle, CA5 7JF, UK
| | - Gemma Dobson
- Paragon Veterinary Group, Townhead Road, Dalston, Carlisle, CA5 7JF, UK
| | - Charlotte Smith
- Paragon Veterinary Group, Townhead Road, Dalston, Carlisle, CA5 7JF, UK
| | - Alan H Handyside
- School of Biosciences, University of Kent, Canterbury, Kent, CT2 7NH, UK; The Bridge Centre, One St Thomas Street, London, SE1 9RY, UK
| | - Kevin D Sinclair
- School of Biosciences, University of Nottingham, Sutton Bonington, Leicestershire, LE12 5RD, UK
| | - Darren K Griffin
- School of Biosciences, University of Kent, Canterbury, Kent, CT2 7NH, UK.
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8
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Abstract
This manuscript describes the different topics I have been involved in the fields of reproductive
physiology and embryo biotechnologies with attempts to address practical issues raised
mainly by the breeding industry. The journey started with phenotyping work in the field of
reproductive physio-pathology. Other issues were related to the optimization of reproductive
biotechnologies to favorize genetic selection. The implementation of genomic selection
raised opportunities to develop the use embryo biotechnologies and showed the interest of
combining them in the case of embryo genotyping. There is still a need to refine phenotyping
for reproductive traits especially for the identification of markers of uterine dysfunction.
It is believed that new knowledge generated by combining different molecular approaches
will be the source of applications that may benefit AI practice and embryo technologies.
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Affiliation(s)
- Patrice Humblot
- Division of Reproduction, Department of Clinical Sciences, SLU, Uppsala, Sweden
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9
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Britt JH, Cushman RA, Dechow CD, Dobson H, Humblot P, Hutjens MF, Jones GA, Ruegg PS, Sheldon IM, Stevenson JS. Invited review: Learning from the future-A vision for dairy farms and cows in 2067. J Dairy Sci 2018; 101:3722-3741. [PMID: 29501340 DOI: 10.3168/jds.2017-14025] [Citation(s) in RCA: 82] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2017] [Accepted: 01/23/2018] [Indexed: 11/19/2022]
Abstract
The world's population will reach 10.4 billion in 2067, with 81% residing in Africa or Asia. Arable land available for food production will decrease to 0.15 ha per person. Temperature will increase in tropical and temperate zones, especially in the Northern Hemisphere, and this will push growing seasons and dairy farming away from arid areas and into more northern latitudes. Dairy consumption will increase because it provides essential nutrients more efficiently than many other agricultural systems. Dairy farming will become modernized in developing countries and milk production per cow will increase, doubling in countries with advanced dairying systems. Profitability of dairy farms will be the key to their sustainability. Genetic improvements will include emphasis on the coding genome and associated noncoding epigenome of cattle, and on microbiomes of dairy cattle and farmsteads. Farm sizes will increase and there will be greater lateral integration of housing and management of dairy cattle of different ages and production stages. Integrated sensors, robotics, and automation will replace much of the manual labor on farms. Managing the epigenome and microbiome will become part of routine herd management. Innovations in dairy facilities will improve the health of cows and permit expression of natural behaviors. Herds will be viewed as superorganisms, and studies of herds as observational units will lead to improvements in productivity, health, and well-being of dairy cattle, and improve the agroecology and sustainability of dairy farms. Dairy farmers in 2067 will meet the world's needs for essential nutrients by adopting technologies and practices that provide improved cow health and longevity, profitable dairy farms, and sustainable agriculture.
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Affiliation(s)
- J H Britt
- Department of Animal Science, North Carolina State University, Raleigh 27695-7621.
| | - R A Cushman
- USDA Agricultural Research Service, US Meat Animal Research Center, Clay Center, NE 68933
| | - C D Dechow
- Department of Animal Science, Pennsylvania State University, University Park 16802
| | - H Dobson
- School of Veterinary Science, University of Liverpool, Neston, United Kingdom CH64 7TE
| | - P Humblot
- Department of Clinical Sciences, Swedish University of Agricultural Sciences, Uppsala, 750 07, Sweden
| | - M F Hutjens
- Department of Animal Sciences, University of Illinois, Urbana 61801
| | - G A Jones
- Central Sands Dairy, De Pere, WI 54115-9603
| | - P S Ruegg
- Department of Animal Science, Michigan State University, East Lansing 48824-1225
| | - I M Sheldon
- Swansea University Medical School, Swansea, Wales, United Kingdom SA2 8PP
| | - J S Stevenson
- Department of Animal Sciences and Industry, Kansas State University, Manhattan 66506-0201
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10
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Abstract
Many biotechnologies are currently used in livestock breeding with the aim of improving reproductive efficiency and increasing the rate of genetic progress in production animals. Semen cryopreservation is the most widely used cryobiotechnology, although vitrification techniques now allow embryos and oocytes to be banked in ever-increasing numbers. Cryopreservation of other types of germplasm (reproductive tissue in general) is also possible, although the techniques are still in the early stages of development for use in livestock species. Although still in their infancy, these techniques are increasingly being used in aquaculture. Germplasm conservation enables reproductive tissues from both animals and fish to be preserved to generate offspring in the future without having to maintain large numbers of living populations of these species. However, such measures need careful planning and coordination. This review explains why the preservation of genetic diversity is needed for livestock and fish, and describes some of the issues involved in germplasm banking. Furthermore, some recent developments in semen handling leading to improved semen cryopreservation and biosecurity measures are also discussed.
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11
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Fujii T, Hirayama H, Naito A, Kashima M, Sakai H, Fukuda S, Yoshino H, Moriyasu S, Kageyama S, Sugimoto Y, Matsuyama S, Hayakawa H, Kimura K. Production of calves by the transfer of cryopreserved bovine elongating conceptuses and possible application for preimplantation genomic selection. J Reprod Dev 2017; 63:497-504. [PMID: 28781338 PMCID: PMC5649099 DOI: 10.1262/jrd.2017-025] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023] Open
Abstract
Preimplantation genomic selection based on single nucleotide polymorphism (SNP) genotypes is expected to accelerate genetic improvement in cattle. However, genome-wide genotyping at the early embryonic stage has several limitations, such as the technical difficulty of embryonic biopsy and low accuracy of genotyping resulting from a limited number of biopsied cells. After hatching from the zona pellucida, the morphology of the bovine embryo changes from spherical to filamentous, in a process known as elongation. The bovine nonsurgical elongating conceptus transfer technique was recently developed and applied for sexing without requiring specialized skills for biopsy. In order to develop a bovine preimplantation genomic selection system combined with the elongating conceptus transfer technique, we examined the accuracy of genotyping by SNP chip analysis using the DNA from elongating conceptuses (Experiment 1) and optimal cryopreservation methods for elongating conceptuses (Experiment 2). In Experiment 1, the call rates of SNP chip analysis following whole genome amplification in biopsied cells from two elongating conceptuses were 95.14% and 99.32%, which were sufficient for estimating genomic breeding value. In Experiment 2, the rates of dead cells in elongating conceptuses cryopreserved by slow freezing were comparable to those in fresh elongating conceptuses. In addition, we obtained healthy calves by the transfer of elongating conceptuses cryopreserved by slow freezing. Our findings indicate that the elongating conceptus transfer technology enables preimplantation genomic selection in cattle based on SNP chip analysis. Further studies on the optimization of cryopreservation methods for elongating conceptuses are required for practical application of the selection system.
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Affiliation(s)
- Takashi Fujii
- Animal Biotechnology Group, Animal Research center, Hokkaido Research Organization, Hokkaido 081-0038, Japan
| | - Hiroki Hirayama
- Animal Biotechnology Group, Animal Research center, Hokkaido Research Organization, Hokkaido 081-0038, Japan.,Department of Bioproduction, Faculty of Bioindustry, Tokyo University of Agriculture, Hokkaido 099-2493, Japan
| | - Akira Naito
- Animal Biotechnology Group, Animal Research center, Hokkaido Research Organization, Hokkaido 081-0038, Japan
| | - Masashi Kashima
- Animal Biotechnology Group, Animal Research center, Hokkaido Research Organization, Hokkaido 081-0038, Japan
| | - Hitomi Sakai
- Department of Bioproduction, Faculty of Bioindustry, Tokyo University of Agriculture, Hokkaido 099-2493, Japan
| | - Shigeo Fukuda
- Animal Biotechnology Group, Animal Research center, Hokkaido Research Organization, Hokkaido 081-0038, Japan
| | - Hitomi Yoshino
- Animal Biotechnology Group, Animal Research center, Hokkaido Research Organization, Hokkaido 081-0038, Japan
| | - Satoru Moriyasu
- Animal Biotechnology Group, Animal Research center, Hokkaido Research Organization, Hokkaido 081-0038, Japan
| | - Soichi Kageyama
- Animal Biotechnology Group, Animal Research center, Hokkaido Research Organization, Hokkaido 081-0038, Japan
| | - Yoshikazu Sugimoto
- Shirakawa Institute of Animal Genetics, Japan Livestock Technology Association, Fukushima 961-8061, Japan
| | - Shuichi Matsuyama
- Animal Feeding and Management Research Division, NARO Institute of Livestock and Grassland Science, Tochigi 329-2793, Japan
| | | | - Koji Kimura
- Graduate School of Environmental and Life Science, Okayama University, Okayama 700-8530, Japan
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12
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Quality and developmental rate of embryos produced with sex-sorted and conventional semen from superovulated dairy cattle. Theriogenology 2017; 87:135-140. [DOI: 10.1016/j.theriogenology.2016.08.013] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2016] [Revised: 07/27/2016] [Accepted: 08/12/2016] [Indexed: 11/24/2022]
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13
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Yudin NS, Lukyanov KI, Voevoda MI, Kolchanov NA. Application of reproductive technologies to improve dairy cattle genomic selection. ACTA ACUST UNITED AC 2016. [DOI: 10.1134/s207905971603014x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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14
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Arouche N, Picard JY, Monniaux D, Jamin SP, Vigier B, Josso N, Cate RL, di Clemente N, Taieb J. The BOC ELISA, a ruminant-specific AMH immunoassay, improves the determination of plasma AMH concentration and its correlation with embryo production in cattle. Theriogenology 2015; 84:1397-404. [DOI: 10.1016/j.theriogenology.2015.07.026] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2015] [Revised: 07/17/2015] [Accepted: 07/21/2015] [Indexed: 10/23/2022]
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15
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Zhang R, Ma ZH, Wu BM. Multiple displacement amplification of whole genomic DNA from urediospores of Puccinia striiformis f. sp. tritici. Curr Genet 2015; 61:221-30. [PMID: 25652158 DOI: 10.1007/s00294-014-0470-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2014] [Revised: 12/04/2014] [Accepted: 12/20/2014] [Indexed: 12/29/2022]
Abstract
Biotrophic fungi, such as Puccinia striiformis f. sp. tritici, because they cannot be cultured on nutrient media, to obtain adequate quantity of DNA for molecular genetic analysis, are usually propagated on living hosts, wheat plants in case of P. striiformis f. sp. tritici. The propagation process is time-, space- and labor-consuming and has been a bottleneck to molecular genetic analysis of this pathogen. In this study we evaluated multiple displacement amplification (MDA) of pathogen genomic DNA from urediospores as an alternative approach to traditional propagation of urediospores followed by DNA extraction. The quantities of pathogen genomic DNA in the products were further determined via real-time PCR with a pair of primers specific for the β-tubulin gene of P. striiformis f. sp. tritici. The amplified fragment length polymorphism (AFLP) fingerprints were also compared between the DNA products. The results demonstrated that adequate genomic DNA at fragment size larger than 23 Kb could be amplified from 20 to 30 urediospores via MDA method. The real-time PCR results suggested that although fresh urediospores collected from diseased leaves were the best, spores picked from diseased leaves stored for a prolonged period could also be used for amplification. AFLP fingerprints exhibited no significant differences between amplified DNA and DNA extracted with CTAB method, suggesting amplified DNA can represent the pathogen's genomic DNA very well. Therefore, MDA could be used to obtain genomic DNA from small precious samples (dozens of spores) for molecular genetic analysis of wheat stripe rust pathogen, and other fungi that are difficult to propagate.
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Affiliation(s)
- R Zhang
- Department of Plant Pathology, China Agricultural University, 2 West Yuanmingyuan Rd., Beijing, 100193, China
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16
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Berry DP. Breeding the dairy cow of the future: what do we need? ANIMAL PRODUCTION SCIENCE 2015. [DOI: 10.1071/an14835] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Genetics is responsible for approximately half the observed changes in animal performance in well structured breeding programs. Key characteristics of the dairy cow of the future include (1) production of a large quantity of high-value output (i.e. milk and meat), (2) good reproductive performance, (3) good health status, (4) good longevity, (5) no requirement for a large quantity of feed, yet being able to eat sufficient feed to meet its requirements, (6) easy to manage (i.e. easy calving, docile), (7) good conformation (over and above reflective of health, reproductive performance and longevity), (8) low environmental footprint, and (9) resilience to external perturbations. Pertinent and balanced breeding goals must be developed and implemented to achieve this type of animal; excluding any characteristic from the breeding goal could be detrimental for genetic gain in this characteristic. Attributes currently not explicitly considered in most dairy-cow breeding objectives include product quality, feed intake and efficiency, and environmental footprint; animal health is poorly represented in most breeding objectives. Lessons from the past deterioration in reproductive performance in the global Holstein population remind us of the consequences of ignoring or failing to monitor certain animal characteristics. More importantly, however, current knowledge clearly demonstrates that once unfavourable trends have been identified and the appropriate breeding strategy implemented, the reversal of genetic trends is achievable, even for low-heritability traits such as reproductive performance. Genetic variation exists in all the characteristics described. In the genomics era, the relevance of heritability statistics for most traits is less; the exception is traits not amenable to routine measurement in large populations. Phenotyping strategies (e.g. more detailed phenotypes, larger population) will remain a key component of an animal breeding strategy to achieve the cow of the future as well as providing the necessary tools and information to monitor performance. The inclusion of genomic information in genetic evaluations is, and will continue, to improve the accuracy of genetic evaluations, which, in turn, will augment genetic gain; genomics, however, can also contribute to gains in performance over and above support of increased genetic gain. Nonetheless, the faster genetic gain and thus reduced ability to purge out unfavourable alleles necessitates the appropriate breeding goal and breeding scheme and very close monitoring of performance, in particular for traits not included in the breeding goals. Developments in other disciplines (e.g. reproductive technologies), coupled with commercial struggle for increased market share of the breeding industry, imply a possible change in the landscape of dairy-cow breeding in the future.
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17
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Shojaei Saadi HA, Vigneault C, Sargolzaei M, Gagné D, Fournier É, de Montera B, Chesnais J, Blondin P, Robert C. Impact of whole-genome amplification on the reliability of pre-transfer cattle embryo breeding value estimates. BMC Genomics 2014; 15:889. [PMID: 25305778 PMCID: PMC4201692 DOI: 10.1186/1471-2164-15-889] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2014] [Accepted: 10/03/2014] [Indexed: 01/21/2023] Open
Abstract
Background Genome-wide profiling of single-nucleotide polymorphisms is receiving increasing attention as a method of pre-implantation genetic diagnosis in humans and of commercial genotyping of pre-transfer embryos in cattle. However, the very small quantity of genomic DNA in biopsy material from early embryos poses daunting technical challenges. A reliable whole-genome amplification (WGA) procedure would greatly facilitate the procedure. Results Several PCR-based and non-PCR based WGA technologies, namely multiple displacement amplification, quasi-random primed library synthesis followed by PCR, ligation-mediated PCR, and single-primer isothermal amplification were tested in combination with different DNA extractions protocols for various quantities of genomic DNA inputs. The efficiency of each method was evaluated by comparing the genotypes obtained from 15 cultured cells (representative of an embryonic biopsy) to unamplified reference gDNA. The gDNA input, gDNA extraction method and amplification technology were all found to be critical for successful genome-wide genotyping. The selected WGA platform was then tested on embryo biopsies (n = 226), comparing their results to that of biopsies collected after birth. Although WGA inevitably leads to a random loss of information and to the introduction of erroneous genotypes, following genomic imputation the resulting genetic index of both sources of DNA were highly correlated (r = 0.99, P<0.001). Conclusion It is possible to generate high-quality DNA in sufficient quantities for successful genome-wide genotyping starting from an early embryo biopsy. However, imputation from parental and population genotypes is a requirement for completing and correcting genotypic data. Judicious selection of the WGA platform, careful handling of the samples and genomic imputation together, make it possible to perform extremely reliable genomic evaluations for pre-transfer embryos. Electronic supplementary material The online version of this article (doi:10.1186/1471-2164-15-889) contains supplementary material, which is available to authorized users.
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Affiliation(s)
| | | | | | | | | | | | | | | | - Claude Robert
- Laboratory of Functional Genomics of Early Embryonic Development, Institut des nutraceutiques et des aliments fonctionnels, Faculté des sciences de l'agriculture et de l'alimentation, Pavillon des services, Université Laval, Québec G1V 0A6, Canada.
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18
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Galli C, Duchi R, Colleoni S, Lagutina I, Lazzari G. Ovum pick up, intracytoplasmic sperm injection and somatic cell nuclear transfer in cattle, buffalo and horses: from the research laboratory to clinical practice. Theriogenology 2014; 81:138-51. [PMID: 24274418 DOI: 10.1016/j.theriogenology.2013.09.008] [Citation(s) in RCA: 89] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2013] [Revised: 09/06/2013] [Accepted: 09/07/2013] [Indexed: 12/29/2022]
Abstract
Assisted reproductive techniques developed for cattle in the last 25 years, like ovum pick up (OPU), intracytoplasmic sperm injection (ICSI), and somatic cell nuclear transfer, have been transferred and adapted to buffalo and horses. The successful clinical applications of these techniques require both the clinical skills specific to each animal species and an experienced laboratory team to support the in vitro phase of the work. In cattle, OPU can be considered a consolidated technology that is rapidly outpacing conventional superovulation for embryo transfer. In buffalo, OPU represents the only possibility for embryo production to advance the implementation of embryo-based biotechnologies in that industry, although it is still mainly in the developmental phase. In the horse, OPU is now an established procedure for breeding from infertile and sporting mares throughout the year. It requires ICSI that in the horse, contrary to what happens in cattle and buffalo, is very efficient and the only option because conventional IVF does not work. Somatic cell nuclear transfer is destined to fill a very small niche for generating animals of extremely high commercial value. The efficiency is low, but because normal animals can be generated it is likely that advancing our knowledge in that field might improve the technology and reduce its cost.
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Affiliation(s)
- Cesare Galli
- Avantea, Laboratory of Reproductive Technologies, 26100 Cremona, Italy; Department of Veterinary Medical Sciences, University of Bologna, Italy; Fondazione Avantea, Cremona, Italy.
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19
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Ponsart C, Le Bourhis D, Knijn H, Fritz S, Guyader-Joly C, Otter T, Lacaze S, Charreaux F, Schibler L, Dupassieux D, Mullaart E. Reproductive technologies and genomic selection in dairy cattle. Reprod Fertil Dev 2014; 26:12-21. [PMID: 24305173 DOI: 10.1071/rd13328] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
Genomic tools are now available for most livestock species and are used routinely for genomic selection (GS) in cattle. One of the most important developments resulting from the introduction of genomic testing for dairy cattle is the application of reasonably priced low-density single nucleotide polymorphism technology in the selection of females. In this context, combining genome testing and reproductive biotechnologies in young heifers enables new strategies to generate replacement and elite females in a given period of time. Moreover, multiple markers have been detected in biopsies of preimplantation stage embryos, thus paving the way to develop new strategies based on preimplantation diagnosis and the genetic screening of embryos. Based on recent advances in GS, the present review focuses on new possibilities inherent in reproductive technologies used for commercial purposes and in genetic schemes, possible side effects and beneficial impacts on reproductive efficiency. A particular focus is on the different steps allowing embryo genotyping, including embryo micromanipulation, DNA production and quality assessment.
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Affiliation(s)
- C Ponsart
- UNCEIA Research and Development, 13 rue Jouet, 94704 Maisons Alfort, France
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20
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Muñoz M, Uyar A, Correia E, Díez C, Fernandez-Gonzalez A, Caamaño JN, Martínez-Bello D, Trigal B, Humblot P, Ponsart C, Guyader-Joly C, Carrocera S, Martin D, Marquant Le Guienne B, Seli E, Gomez E. Prediction of pregnancy viability in bovine in vitro-produced embryos and recipient plasma with Fourier transform infrared spectroscopy. J Dairy Sci 2014; 97:5497-507. [PMID: 24997663 DOI: 10.3168/jds.2014-8067] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2014] [Accepted: 05/27/2014] [Indexed: 12/26/2022]
Abstract
We analyzed embryo culture medium (CM) and recipient blood plasma using Fourier transform infrared (FTIR) metabolomics to predict pregnancy outcome. Individually cultured, in vitro-produced (IVP) blastocysts were transferred to recipients as fresh and vitrified-warmed. Spent CM and plasma samples were evaluated using FTIR. The discrimination capability of the classifiers was assessed for accuracy, sensitivity (pregnancy), specificity (nonpregnancy), and area under the receiver operator characteristic curve (AUC). Within all IVP fresh embryos (birth rate=52%), high AUC were obtained at birth, especially with expanded blastocysts (CM: 0.80±0.053; plasma: 0.89±0.034). The AUC of vitrified IVP embryos (birth rate = 31%) were 0.607±0.038 (CM, expanded blastocysts) and 0.672±0.023 (plasma, all stages). Recipient plasma generally predicted pregnancy outcome better than did embryo CM. Embryos and recipients with improved pregnancy viability were identified, which could increase the economic benefit to the breeding industry.
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Affiliation(s)
- M Muñoz
- Centro de Biotecnología Animal-Servicio Regional de Investigación y Desarrollo Agroalimentario (SERIDA), Camino de Rioseco 1225, La Olla - Deva, 33394 Gijón, Asturias, Spain
| | - A Uyar
- Department of Obstetrics, Gynecology, and Reproductive Sciences, Yale School of Medicine, 310 Cedar street, LSOG 304B, New Haven, CT 06520; Department of Computer Engineering, Okan University, Tuzla Kampusu, 34959, Tuzla, Istanbul, Turkey
| | - E Correia
- Centro de Biotecnología Animal-Servicio Regional de Investigación y Desarrollo Agroalimentario (SERIDA), Camino de Rioseco 1225, La Olla - Deva, 33394 Gijón, Asturias, Spain
| | - C Díez
- Centro de Biotecnología Animal-Servicio Regional de Investigación y Desarrollo Agroalimentario (SERIDA), Camino de Rioseco 1225, La Olla - Deva, 33394 Gijón, Asturias, Spain
| | - A Fernandez-Gonzalez
- Servicios Científico Técnicos (Oviedo), Universidad de Oviedo, 33006 Oviedo, Asturias, Spain
| | - J N Caamaño
- Centro de Biotecnología Animal-Servicio Regional de Investigación y Desarrollo Agroalimentario (SERIDA), Camino de Rioseco 1225, La Olla - Deva, 33394 Gijón, Asturias, Spain
| | - D Martínez-Bello
- U.T.E. Bos-Lugar de Bos, Guísamo 15640 Bergondo, A Coruña, Spain
| | - B Trigal
- Centro de Biotecnología Animal-Servicio Regional de Investigación y Desarrollo Agroalimentario (SERIDA), Camino de Rioseco 1225, La Olla - Deva, 33394 Gijón, Asturias, Spain
| | - P Humblot
- Swedish University of Agricultural Sciences, PO Box 7054, SE75007 Uppsala, Sweden
| | - C Ponsart
- Union Nationale des Cooperatives D' Elevage et Insemination Animale (UNCEIA), Department of Research and Development, 13 rue Jouet, 94704 Maisons Alfort, France
| | - C Guyader-Joly
- UNCEIA, Station Expérimentale, 484 Chemin Darefin, 38300 Chateauvillain, France
| | - S Carrocera
- Centro de Biotecnología Animal-Servicio Regional de Investigación y Desarrollo Agroalimentario (SERIDA), Camino de Rioseco 1225, La Olla - Deva, 33394 Gijón, Asturias, Spain
| | - D Martin
- Centro de Biotecnología Animal-Servicio Regional de Investigación y Desarrollo Agroalimentario (SERIDA), Camino de Rioseco 1225, La Olla - Deva, 33394 Gijón, Asturias, Spain
| | - B Marquant Le Guienne
- Union Nationale des Cooperatives D' Elevage et Insemination Animale (UNCEIA), Department of Research and Development, 13 rue Jouet, 94704 Maisons Alfort, France
| | - E Seli
- Department of Obstetrics, Gynecology, and Reproductive Sciences, Yale School of Medicine, 310 Cedar street, LSOG 304B, New Haven, CT 06520
| | - E Gomez
- Centro de Biotecnología Animal-Servicio Regional de Investigación y Desarrollo Agroalimentario (SERIDA), Camino de Rioseco 1225, La Olla - Deva, 33394 Gijón, Asturias, Spain.
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Metabolomic prediction of pregnancy viability in superovulated cattle embryos and recipients with fourier transform infrared spectroscopy. BIOMED RESEARCH INTERNATIONAL 2014; 2014:608579. [PMID: 24834432 PMCID: PMC4009133 DOI: 10.1155/2014/608579] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/24/2014] [Accepted: 03/30/2014] [Indexed: 12/31/2022]
Abstract
We analyzed embryo culture medium (CM) and recipient blood plasma using Fourier transform infrared spectroscopy (FTIR) metabolomics to identify spectral models predictive of pregnancy outcome. Embryos collected on Day 6 from superovulated cows in 2 countries were individually cultured in synthetic oviduct fluid medium with BSA for 24 h before embryo transfer. Spent CM, blank controls, and plasma samples (Day 0 and Day 7) were evaluated using FTIR. The spectra obtained were analyzed. The discrimination capability of the classifiers was assessed for accuracy, sensitivity (pregnancy), specificity (nonpregnancy), and area under the ROC curve (AUC). Endpoints considered were Day 60 pregnancy and birth. High AUC was obtained for Day 60 pregnancy in CM within individual laboratories (France AUC = 0.751 ± 0.039, Spain AUC = 0.718 ± 0.024), while cumulative data decreased the AUC (AUC = 0.604 ± 0.029). Predictions for CM at birth were lower than Day 60 pregnancy. Predictions with plasma at birth improved cumulative over individual results (Day 0: France AUC = 0.690 ± 0.044; Spain AUC < 0.55; cumulative AUC = 0.747 ± 0.032). Plasma generally predicted pregnancy and birth better than CM. These first results show that FTIR metabolomics could allow the identification of embryos and recipients with improved pregnancy viability, which may contribute to increasing the efficiency of selection schemes based on ET.
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22
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23
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Lauri A, Lazzari G, Galli C, Lagutina I, Genzini E, Braga F, Mariani P, Williams JL. Assessment of MDA efficiency for genotyping using cloned embryo biopsies. Genomics 2012; 101:24-9. [PMID: 22982297 DOI: 10.1016/j.ygeno.2012.09.002] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2012] [Revised: 09/04/2012] [Accepted: 09/05/2012] [Indexed: 01/09/2023]
Abstract
The possibility to genotype embryos prior to implantation would have advantages for increasing the speed of selection of cattle. Reliable genotyping requires more DNA than can be obtained from biopsies of embryos, if they are to remain viable. Multiple displacement amplification (MDA) is a whole genome amplification technique used to increase the amount of DNA from biopsies for analysis. Reduced genome coverage resulting in Allele Drop Out (ADO) at heterozygous loci or missing genotypes are drawbacks of MDA. The present article describes the correlation between the input DNA quantity or embryo biopsy size and MDA success. Missing genotypes and ADO drastically increased when fewer than 30-40 cells or the genomic equivalents were used. However, embryo viability was found to be reduced if biopsied with more than 10 cells. Therefore, in vitro cell culture was investigated as a means to increase the number of cells available and the genotyping reliability.
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Affiliation(s)
- Andrea Lauri
- Parco Tecnologico Padano, Via Einstein, Lodi, Italy.
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24
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Abstract
SummaryThe technique of sperm-mediated gene transfer (SMGT) can be used to delivery exogenous DNA into the oocyte. However, it has low repeatability and produces inconsistent results. In order to optimize this technique, it is necessary to study the mechanism by which DNA enters the sperm cell and integrates in the sperm genome. Furthermore, studies must focus in the maintenance of sperm cell viability and function. The aim of this study was to evaluate different SMGT protocols of sperm electroporation or capacitation (CaI) aiming to maintain sperm viability in the production of bovine embryos in vitro. Frozen–thawed semen was divided in two experimental groups (electroporation or CaI) and one control group (non-treated cells). For the electroporation method, five different voltages (100, 500, 750, 1000 or 1500 V) with 25 μF capacitance were used. For CaI treatment, combinations of two CaI concentrations (250 nM or 500 nM), two incubation periods of sperm cells with CaI (1 or 5 min) and two incubation periods that mimicked time of sperm cell interaction with exogenous DNA molecules (1 or 2 h) were evaluated. According to our data, electroporation and CaI treatments do not prevent sperm penetration and oocyte fertilization and can be an alternative method to achieve satisfactory DNA delivery in SMGT protocols.
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25
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HOCQUETTE JF, CAPEL C, DAVID V, GUÉMENÉ D, BIDANEL J, PONSART C, GASTINEL PL, BAIL PYL, MONGET P, MORMÈDE P, BARBEZANT M, GUILLOU F, PEYRAUD JL. Objectives and applications of phenotyping network set-up for livestock. Anim Sci J 2012; 83:517-28. [DOI: 10.1111/j.1740-0929.2012.01015.x] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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26
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Resende MFR, Muñoz P, Acosta JJ, Peter GF, Davis JM, Grattapaglia D, Resende MDV, Kirst M. Accelerating the domestication of trees using genomic selection: accuracy of prediction models across ages and environments. THE NEW PHYTOLOGIST 2012; 193:617-624. [PMID: 21973055 DOI: 10.1111/j.1469-8137.2011.03895.x] [Citation(s) in RCA: 123] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
• Genomic selection is increasingly considered vital to accelerate genetic improvement. However, it is unknown how accurate genomic selection prediction models remain when used across environments and ages. This knowledge is critical for breeders to apply this strategy in genetic improvement. • Here, we evaluated the utility of genomic selection in a Pinus taeda population of c. 800 individuals clonally replicated and grown on four sites, and genotyped for 4825 single-nucleotide polymorphism (SNP) markers. Prediction models were estimated for diameter and height at multiple ages using genomic random regression best linear unbiased predictor (BLUP). • Accuracies of prediction models ranged from 0.65 to 0.75 for diameter, and 0.63 to 0.74 for height. The selection efficiency per unit time was estimated as 53-112% higher using genomic selection compared with phenotypic selection, assuming a reduction of 50% in the breeding cycle. Accuracies remained high across environments as long as they were used within the same breeding zone. However, models generated at early ages did not perform well to predict phenotypes at age 6 yr. • These results demonstrate the feasibility and remarkable gain that can be achieved by incorporating genomic selection in breeding programs, as long as models are used at the relevant selection age and within the breeding zone in which they were estimated.
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Affiliation(s)
- M F R Resende
- Genetics and Genomics Graduate Program, University of Florida, PO Box 103610, Gainesville, FL 32611, USA
- School of Forest Resources and Conservation, University of Florida, PO Box 110410, Gainesville, FL 32611, USA
| | - P Muñoz
- Plant Molecular and Cellular Biology Graduate Program, University of Florida, PO Box 110690, Gainesville, FL 32611, USA
- School of Forest Resources and Conservation, University of Florida, PO Box 110410, Gainesville, FL 32611, USA
| | - J J Acosta
- School of Forest Resources and Conservation, University of Florida, PO Box 110410, Gainesville, FL 32611, USA
| | - G F Peter
- School of Forest Resources and Conservation, University of Florida, PO Box 110410, Gainesville, FL 32611, USA
- University of Florida Genetics Institute, University of Florida, PO Box 103610, Gainesville, FL 32611, USA
| | - J M Davis
- School of Forest Resources and Conservation, University of Florida, PO Box 110410, Gainesville, FL 32611, USA
- University of Florida Genetics Institute, University of Florida, PO Box 103610, Gainesville, FL 32611, USA
| | - D Grattapaglia
- Plant Genetics Laboratory, Embrapa - Recursos Genéticos e Biotecnologia, Parque Estação Biológica, Brasília, DF 70770-970, Brazil
- Graduate Program in Genomic Sciences and Biotechnology, Universidade Católica de Brasília-SGAN 916 modulo B, Brasília, DF 70790-160, Brazil
| | - M D V Resende
- EMBRAPA Forestry, Estrada da Ribeira, km 111 Caixa Postal 319, Colombo, PR 83411-000 Brazil
- Department of Forest Engineering, Universidade Federal de Viçosa, Viçosa, MG 36571-000 Brazil
| | - M Kirst
- School of Forest Resources and Conservation, University of Florida, PO Box 110410, Gainesville, FL 32611, USA
- University of Florida Genetics Institute, University of Florida, PO Box 103610, Gainesville, FL 32611, USA
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Rico C, Drouilhet L, Salvetti P, Dalbiès-Tran R, Jarrier P, Touzé JL, Pillet E, Ponsart C, Fabre S, Monniaux D. Determination of anti-Müllerian hormone concentrations in blood as a tool to select Holstein donor cows for embryo production: from the laboratory to the farm. Reprod Fertil Dev 2012; 24:932-44. [DOI: 10.1071/rd11290] [Citation(s) in RCA: 74] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2011] [Accepted: 02/17/2012] [Indexed: 11/23/2022] Open
Abstract
High between-animal variability in the number of embryos produced by multiple ovulation and embryo transfer (MOET) and ovum pick-up and in vitro production (OPU–IVP) methods remains a major limit to the development of embryo biotechnologies in cattle. The measurement of anti-Müllerian hormone (AMH) endocrine concentrations in cows can help to predict their follicular and ovulatory responses to gonadotrophin treatment. The present study aimed to provide practical information for a simple prognostic method based on AMH measurement in Holstein cows. Accurate AMH concentrations could be measured with ELISA in blood or plasma. In cows undergoing repeated OPU protocols over 1 year, the AMH concentrations measured in plasma samples collected before each gonadotrophin treatment were found to be highly repeatable and were tightly correlated with follicular responses. From data obtained at both an experimental station and farm settings, it was possible to propose AMH cut-off values to identify low-responding cows. Gonadotrophin-stimulated cows producing fewer than 15 large follicles at oestrus and fewer than 10 embryos in MOET protocols could be discarded efficiently with plasma AMH concentrations below 87 and 74 pg mL–1, respectively. In conclusion, we propose a prognostic method based on a single AMH measurement to improve the results of embryo biotechnologies.
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