Functional diversity does not explain the co-occurrence of non-native species within a flow-modified African river system

Globally, there is growing concern on the occurrence of multiple non-native species within invaded habitats. Proliferation of multiple non-native species together with anthropogenic-driven habitat modifications raise questions on the mechanisms facilitating the co-occurrence of these species and their potential impact within the recipient systems. Using the Great Fish River system (South Africa) which is anthropogenically-modified by inter-basin water transfer (IBWT), as a case study, this research employed trait-based approaches to explore patterns associated with the co-occurrence of multiple non-native fish species. This was achieved by investigating the role of functional diversity of non-native and native fishes in relation to their composition, distribution and environmental relationships. Nineteen functional traits that defined two broad ecological attributes (habitat use and feeding) were determined for 13 fish species that comprised eight native and five non-native fishes. We used these data to, firstly, evaluate functional diversity patterns and to compare functional traits of native and non-native fishes in the Great Fish River system. Secondly, we employed multivariate ordination analyses (factor analysis, RLQ and fourth-corner analyses) to investigate interspecific trait variations and potential species-trait-environmental relationships. From a functional diversity perspective, there were no significant differences in most functional diversity indices between native and non-native species. Despite interspecific variation in body morphology-related traits, we also found no clear separation between native and non-native species based on the ordination analysis of the functional traits. Furthermore, while RLQ ordination showed broad spatial patterns, the fourth-corner analyses revealed no significant relationships among species distribution, functional traits and environmental variables. The weak species-trait-environment relationship observed in this study suggests that environmental filtering was likely a poor determinant of functional trait structure within the Great Fish River. Modification of the natural flow regime may have weakened the relationship between species traits and the environment as has been shown in other systems.

Diversity, distribution and extinction risk of native freshwater fishes of South Africa

Extinction risk for 101 valid species and 18 unique genetic lineages of native freshwater fishes of South Africa was assessed in 2016 following the IUCN Red List criteria. An additional five species (three new species that were described and two species that were revalidated subsequent to the 2016 assessments) were assessed in the present study. A synthesis of the outcome of the assessments of the 106 valid species and 18 genetic lineages indicates that 45 (36%) of South Africa's freshwater fish taxa are threatened (7 Critically Endangered, 25 Endangered, 13 Vulnerable). Of the remaining taxa, 17 (14%) are listed as Near Threatened, 57 (46%) are Least Concern and five (4%) are Data Deficient. More than 60% of the endemic taxa are threatened. The Cape Fold Ecoregion has the highest proportion of threatened taxa (67%) due to the existence of a unique assemblage of narrow-range endemic species. Galaxias and Pseudobarbus have the highest number of highly threatened taxa as most of the species and lineages in these genera are classified as either CR or EN. Major threats to the native freshwater fishes of the country are invasive fish species, deterioration of water quality, impoundments and excessive water abstraction, land use changes and modification of riverine habitats. Immediate conservation efforts should focus on securing remnant populations of highly threatened taxa and preventing deterioration in threat status, because recovery is rare. Accurate delimitation of species boundaries, mapping their distribution ranges, improved knowledge of pressures and long-term monitoring of population trends need to be prioritised to generate credible data for the 2026 IUCN threat status assessments and designation of important fish areas as part of the National Freshwater Ecosystem Priority Areas (NFEPA) initiative.

Distribution patterns and habitat associations of Sandelia bainsii (Teleostei: Anabantidae), a highly threatened narrow-range endemic freshwater fish

Sandelia bainsii is a range-restricted and highly threatened freshwater fish endemic to South Africa. Recent genetic evidence suggests that this species comprises three allopatrically distributed lineages that have been informally designated as Sandelia sp. "Kowie," Sandelia sp. "Keiskamma" and Sandelia sp. "Buffalo." As these lineages have only been recently identified and are likely to face a high risk of extinction because of restricted distributions, there is a critical need for generating ecological information to guide conservation prioritisation. The present study compared the historical and current distribution patterns, together with the habitat associations of Sandelia sp. "Kowie" in the Koonap and Kat rivers, tributaries of the Great Fish River. This study indicated that this lineage has been extirpated from one of the three localities in the Koonap River where it was historically abundant. In the Kat River, the current distribution of Sandelia sp. "Kowie" was comparable to its historical range, but its future persistence is threatened by the presence of non-native piscivores, instream physical barriers and potential future exploration for shale gas and infrastructure development in the Karoo Basin. A generalised hurdle negative binomial model revealed that although this lineage's probability of occurrence was high in habitats with boulder and sand substrates, and low conductivity, habitat characteristics were poor predictors of its abundance. Thus, it was postulated that the current range of this lineage probably represents the only available habitats for the persistence of different life stages for this taxon. Alternatively, the observed patterns may suggest the possibility of a shift in habitat associations, possibly for optimum utilisation of the remaining refugia within this river system. Immediate conservation measures should focus on preventing the spread on non-native invasive fishes, whereas future studies should evaluate the impacts of population fragmentation and identify appropriate intervention measures to maintain this lineage's long-term adaptive potential.