1
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Stengl M, Schneider AC. Contribution of membrane-associated oscillators to biological timing at different timescales. Front Physiol 2024; 14:1243455. [PMID: 38264332 PMCID: PMC10803594 DOI: 10.3389/fphys.2023.1243455] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Accepted: 12/12/2023] [Indexed: 01/25/2024] Open
Abstract
Environmental rhythms such as the daily light-dark cycle selected for endogenous clocks. These clocks predict regular environmental changes and provide the basis for well-timed adaptive homeostasis in physiology and behavior of organisms. Endogenous clocks are oscillators that are based on positive feedforward and negative feedback loops. They generate stable rhythms even under constant conditions. Since even weak interactions between oscillators allow for autonomous synchronization, coupling/synchronization of oscillators provides the basis of self-organized physiological timing. Amongst the most thoroughly researched clocks are the endogenous circadian clock neurons in mammals and insects. They comprise nuclear clockworks of transcriptional/translational feedback loops (TTFL) that generate ∼24 h rhythms in clock gene expression entrained to the environmental day-night cycle. It is generally assumed that this TTFL clockwork drives all circadian oscillations within and between clock cells, being the basis of any circadian rhythm in physiology and behavior of organisms. Instead of the current gene-based hierarchical clock model we provide here a systems view of timing. We suggest that a coupled system of autonomous TTFL and posttranslational feedback loop (PTFL) oscillators/clocks that run at multiple timescales governs adaptive, dynamic homeostasis of physiology and behavior. We focus on mammalian and insect neurons as endogenous oscillators at multiple timescales. We suggest that neuronal plasma membrane-associated signalosomes constitute specific autonomous PTFL clocks that generate localized but interlinked oscillations of membrane potential and intracellular messengers with specific endogenous frequencies. In each clock neuron multiscale interactions of TTFL and PTFL oscillators/clocks form a temporally structured oscillatory network with a common complex frequency-band comprising superimposed multiscale oscillations. Coupling between oscillator/clock neurons provides the next level of complexity of an oscillatory network. This systemic dynamic network of molecular and cellular oscillators/clocks is suggested to form the basis of any physiological homeostasis that cycles through dynamic homeostatic setpoints with a characteristic frequency-band as hallmark. We propose that mechanisms of homeostatic plasticity maintain the stability of these dynamic setpoints, whereas Hebbian plasticity enables switching between setpoints via coupling factors, like biogenic amines and/or neuropeptides. They reprogram the network to a new common frequency, a new dynamic setpoint. Our novel hypothesis is up for experimental challenge.
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Affiliation(s)
- Monika Stengl
- Department of Biology, Animal Physiology/Neuroethology, University of Kassel, Kassel, Germany
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2
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Energy-efficient network activity from disparate circuit parameters. Proc Natl Acad Sci U S A 2022; 119:e2207632119. [PMID: 36279461 PMCID: PMC9636970 DOI: 10.1073/pnas.2207632119] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Neural circuits can produce similar activity patterns from vastly different combinations of channel and synaptic conductances. These conductances are tuned for specific activity patterns but might also reflect additional constraints, such as metabolic cost or robustness to perturbations. How do such constraints influence the range of permissible conductances? Here we investigate how metabolic cost affects the parameters of neural circuits with similar activity in a model of the pyloric network of the crab
Cancer borealis
. We present a machine learning method that can identify a range of network models that generate activity patterns matching experimental data and find that neural circuits can consume largely different amounts of energy despite similar circuit activity. Furthermore, a reduced but still significant range of circuit parameters gives rise to energy-efficient circuits. We then examine the space of parameters of energy-efficient circuits and identify potential tuning strategies for low metabolic cost. Finally, we investigate the interaction between metabolic cost and temperature robustness. We show that metabolic cost can vary across temperatures but that robustness to temperature changes does not necessarily incur an increased metabolic cost. Our analyses show that despite metabolic efficiency and temperature robustness constraining circuit parameters, neural systems can generate functional, efficient, and robust network activity with widely disparate sets of conductances.
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3
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Neural optimization: Understanding trade-offs with Pareto theory. Curr Opin Neurobiol 2021; 71:84-91. [PMID: 34688051 DOI: 10.1016/j.conb.2021.08.008] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Accepted: 08/26/2021] [Indexed: 11/21/2022]
Abstract
Nervous systems, like any organismal structure, have been shaped by evolutionary processes to increase fitness. The resulting neural 'bauplan' has to account for multiple objectives simultaneously, including computational function, as well as additional factors such as robustness to environmental changes and energetic limitations. Oftentimes these objectives compete, and quantification of the relative impact of individual optimization targets is non-trivial. Pareto optimality offers a theoretical framework to decipher objectives and trade-offs between them. We, therefore, highlight Pareto theory as a useful tool for the analysis of neurobiological systems from biophysically detailed cells to large-scale network structures and behavior. The Pareto approach can help to assess optimality, identify relevant objectives and their respective impact, and formulate testable hypotheses.
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4
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Niemeyer N, Schleimer JH, Schreiber S. Biophysical models of intrinsic homeostasis: Firing rates and beyond. Curr Opin Neurobiol 2021; 70:81-88. [PMID: 34454303 DOI: 10.1016/j.conb.2021.07.011] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2021] [Revised: 06/14/2021] [Accepted: 07/14/2021] [Indexed: 12/01/2022]
Abstract
In view of ever-changing conditions both in the external world and in intrinsic brain states, maintaining the robustness of computations poses a challenge, adequate solutions to which we are only beginning to understand. At the level of cell-intrinsic properties, biophysical models of neurons permit one to identify relevant physiological substrates that can serve as regulators of neuronal excitability and to test how feedback loops can stabilize crucial variables such as long-term calcium levels and firing rates. Mathematical theory has also revealed a rich set of complementary computational properties arising from distinct cellular dynamics and even shaping processing at the network level. Here, we provide an overview over recently explored homeostatic mechanisms derived from biophysical models and hypothesize how multiple dynamical characteristics of cells, including their intrinsic neuronal excitability classes, can be stably controlled.
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Affiliation(s)
- Nelson Niemeyer
- Institute for Theoretical Biology, Humboldt-Universität zu Berlin, 10115, Berlin, Germany; Einstein Center for Neurosciences Berlin, Charitéplatz 1, 10117, Berlin, Germany; Bernstein Center for Computational Neuroscience, 10115, Berlin, Germany
| | - Jan-Hendrik Schleimer
- Institute for Theoretical Biology, Humboldt-Universität zu Berlin, 10115, Berlin, Germany; Bernstein Center for Computational Neuroscience, 10115, Berlin, Germany
| | - Susanne Schreiber
- Institute for Theoretical Biology, Humboldt-Universität zu Berlin, 10115, Berlin, Germany; Einstein Center for Neurosciences Berlin, Charitéplatz 1, 10117, Berlin, Germany; Bernstein Center for Computational Neuroscience, 10115, Berlin, Germany.
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5
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Tzouanas CN, Kim S, Badhiwala KN, Avants BW, Robinson JT. Hydra vulgaris shows stable responses to thermal stimulation despite large changes in the number of neurons. iScience 2021; 24:102490. [PMID: 34095784 PMCID: PMC8164038 DOI: 10.1016/j.isci.2021.102490] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2020] [Revised: 02/03/2021] [Accepted: 04/27/2021] [Indexed: 11/27/2022] Open
Abstract
Many animals that lose neural tissue to injury or disease can maintain behavioral repertoires by regenerating new neurons or reorganizing existing neural circuits. However, most neuroscience small model organisms lack this high degree of neural plasticity. We show that Hydra vulgaris can maintain stable sensory-motor behaviors despite 2-fold changes in neuron count, due to naturally occurring size variation or surgical resection. Specifically, we find that both behavioral and neural responses to rapid temperature changes are maintained following these perturbations. We further describe possible mechanisms for the observed neural activity and argue that Hydra's radial symmetry may allow it to maintain stable behaviors when changes in the numbers of neurons do not selectively eliminate any specific neuronal cell type. These results suggest that Hydra provides a powerful model for studying how animals maintain stable sensory-motor responses within dynamic neural circuits and may lead to the development of general principles for injury-tolerant neural architectures. Thermal stimulation drives temperature-dependent firing rate in specific Hydra neurons Hydra show stable neural responses to temperature despite 2× decrease in neuron count Injury tolerance of Hydra offers model for stable neural architecture
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Affiliation(s)
| | - Soonyoung Kim
- Department of Electrical and Computer Engineering, Rice University, 6100 Main Street, Houston, TX 77005, USA
| | - Krishna N Badhiwala
- Department of Bioengineering, Rice University, 6100 Main Street, Houston, TX 77005, USA
| | - Benjamin W Avants
- Department of Electrical and Computer Engineering, Rice University, 6100 Main Street, Houston, TX 77005, USA
| | - Jacob T Robinson
- Department of Bioengineering, Rice University, 6100 Main Street, Houston, TX 77005, USA.,Department of Electrical and Computer Engineering, Rice University, 6100 Main Street, Houston, TX 77005, USA.,Department of Neuroscience, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA
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6
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Boyd-Gibbins N, Tardieu CH, Blunskyte M, Kirkwood N, Somers J, Albert JT. Turnover and activity-dependent transcriptional control of NompC in the Drosophila ear. iScience 2021; 24:102486. [PMID: 34027326 PMCID: PMC8134069 DOI: 10.1016/j.isci.2021.102486] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Revised: 02/17/2021] [Accepted: 04/27/2021] [Indexed: 01/17/2023] Open
Abstract
Across their lives, biological sensors maintain near-constant functional outputs despite countless exogenous and endogenous perturbations. This sensory homeostasis is the product of multiple dynamic equilibria, the breakdown of which contributes to age-related decline. The mechanisms of homeostatic maintenance, however, are still poorly understood. The ears of vertebrates and insects are characterized by exquisite sensitivities but also by marked functional vulnerabilities. Being under the permanent load of thermal and acoustic noise, auditory transducer channels exemplify the homeostatic challenge. We show that (1) NompC-dependent mechanotransducers in the ear of the fruit fly Drosophila melanogaster undergo continual replacement with estimated turnover times of 9.1 hr; (2) a de novo synthesis of NompC can restore transducer function in the adult ears of congenitally hearing-impaired flies; (3) key components of the auditory transduction chain, including NompC, are under activity-dependent transcriptional control, likely forming a transducer-operated mechanosensory gain control system that extends beyond hearing organs. De novo NompC synthesis restores auditory transduction in congenitally deafened flies. Complete turnover of NompC mechanotransducers within less than 24 hr. Activity-dependent transcriptional control of transducers controls auditory function.
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Affiliation(s)
| | - Camille H Tardieu
- Ear Institute, University College London, 332 Gray's Inn Road, London WC1X 8EE, UK
| | - Modesta Blunskyte
- Ear Institute, University College London, 332 Gray's Inn Road, London WC1X 8EE, UK
| | - Nerissa Kirkwood
- Ear Institute, University College London, 332 Gray's Inn Road, London WC1X 8EE, UK
| | - Jason Somers
- Ear Institute, University College London, 332 Gray's Inn Road, London WC1X 8EE, UK.,The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK
| | - Joerg T Albert
- Ear Institute, University College London, 332 Gray's Inn Road, London WC1X 8EE, UK.,The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK.,Centre for Mathematics and Physics in the Life Sciences and Experimental Biology (CoMPLEX), University College London, Gower Street, London WC1E 6BT, UK.,Department of Cell and Developmental Biology, University College London, Gower Street, London WC1E 6DE, UK
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7
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Ratliff J, Franci A, Marder E, O'Leary T. Neuronal oscillator robustness to multiple global perturbations. Biophys J 2021; 120:1454-1468. [PMID: 33610580 PMCID: PMC8105708 DOI: 10.1016/j.bpj.2021.01.038] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Revised: 12/07/2020] [Accepted: 01/07/2021] [Indexed: 11/29/2022] Open
Abstract
Neuronal activity depends on ion channels and biophysical processes that are strongly and differentially sensitive to physical variables such as temperature and pH. Nonetheless, neuronal oscillators can be surprisingly resilient to perturbations in these variables. We study a three-neuron pacemaker ensemble that drives the pyloric rhythm of the crab, Cancer borealis. These crabs routinely experience a number of global perturbations, including changes in temperature and pH. Although pyloric oscillations are robust to such changes, for sufficiently large deviations the rhythm reversibly breaks down. As temperature increases beyond a tipping point, oscillators transition to silence. Acidic pH deviations also show tipping points, with a reliable transition first to tonic spiking, then to silence. Surprisingly, robustness to perturbations in pH only moderately affects temperature robustness. Consistent with high animal-to-animal variability in biophysical circuit parameters, tipping points in temperature and pH vary across animals. However, the ordering and discrete classes of transitions at critical points are conserved. This implies that qualitative oscillator dynamics are preserved across animals despite high quantitative parameter variability. A universal model of bursting dynamics predicts the existence of these transition types and the order in which they occur.
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Affiliation(s)
- Jacob Ratliff
- Dominick P Purpura Department of Neuroscience, Albert Einstein College of Medicine, Bronx, New York
| | - Alessio Franci
- Department of Mathematics, National Autonomous University of Mexico, Mexico City, Mexico
| | - Eve Marder
- Biology Department, Volen Center, Brandeis University, Waltham, Massachusetts.
| | - Timothy O'Leary
- Department of Engineering, University of Cambridge, Cambridge, United Kingdom.
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8
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Powell D, Haddad SA, Gorur-Shandilya S, Marder E. Coupling between fast and slow oscillator circuits in Cancer borealis is temperature-compensated. eLife 2021; 10:60454. [PMID: 33538245 PMCID: PMC7889077 DOI: 10.7554/elife.60454] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Accepted: 02/01/2021] [Indexed: 12/21/2022] Open
Abstract
Coupled oscillatory circuits are ubiquitous in nervous systems. Given that most biological processes are temperature-sensitive, it is remarkable that the neuronal circuits of poikilothermic animals can maintain coupling across a wide range of temperatures. Within the stomatogastric ganglion (STG) of the crab, Cancer borealis, the fast pyloric rhythm (~1 Hz) and the slow gastric mill rhythm (~0.1 Hz) are precisely coordinated at ~11°C such that there is an integer number of pyloric cycles per gastric mill cycle (integer coupling). Upon increasing temperature from 7°C to 23°C, both oscillators showed similar temperature-dependent increases in cycle frequency, and integer coupling between the circuits was conserved. Thus, although both rhythms show temperature-dependent changes in rhythm frequency, the processes that couple these circuits maintain their coordination over a wide range of temperatures. Such robustness to temperature changes could be part of a toolbox of processes that enables neural circuits to maintain function despite global perturbations.
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Affiliation(s)
- Daniel Powell
- Biology Department and Volen Center, Brandeis University, Waltham, United States
| | - Sara A Haddad
- Biology Department and Volen Center, Brandeis University, Waltham, United States
| | | | - Eve Marder
- Biology Department and Volen Center, Brandeis University, Waltham, United States
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9
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Zhang Z, Reis FMCV, He Y, Park JW, DiVittorio JR, Sivakumar N, van Veen JE, Maesta-Pereira S, Shum M, Nichols I, Massa MG, Anderson S, Paul K, Liesa M, Ajijola OA, Xu Y, Adhikari A, Correa SM. Estrogen-sensitive medial preoptic area neurons coordinate torpor in mice. Nat Commun 2020; 11:6378. [PMID: 33311503 PMCID: PMC7732979 DOI: 10.1038/s41467-020-20050-1] [Citation(s) in RCA: 47] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Accepted: 11/12/2020] [Indexed: 12/15/2022] Open
Abstract
Homeotherms maintain a stable internal body temperature despite changing environments. During energy deficiency, some species can cease to defend their body temperature and enter a hypothermic and hypometabolic state known as torpor. Recent advances have revealed the medial preoptic area (MPA) as a key site for the regulation of torpor in mice. The MPA is estrogen-sensitive and estrogens also have potent effects on both temperature and metabolism. Here, we demonstrate that estrogen-sensitive neurons in the MPA can coordinate hypothermia and hypometabolism in mice. Selectively activating estrogen-sensitive MPA neurons was sufficient to drive a coordinated depression of metabolic rate and body temperature similar to torpor, as measured by body temperature, physical activity, indirect calorimetry, heart rate, and brain activity. Inducing torpor with a prolonged fast revealed larger and more variable calcium transients from estrogen-sensitive MPA neurons during bouts of hypothermia. Finally, whereas selective ablation of estrogen-sensitive MPA neurons demonstrated that these neurons are required for the full expression of fasting-induced torpor in both female and male mice, their effects on thermoregulation and torpor bout initiation exhibit differences across sex. Together, these findings suggest a role for estrogen-sensitive MPA neurons in directing the thermoregulatory and metabolic responses to energy deficiency.
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Affiliation(s)
- Zhi Zhang
- Department of Integrative Biology and Physiology, University of California Los Angeles, Los Angeles, CA, USA
- Brain Research Institute, University of California Los Angeles, Los Angeles, CA, USA
| | - Fernando M C V Reis
- Department of Psychology, University of California Los Angeles, Los Angeles, CA, USA
| | - Yanlin He
- USDA/ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, Houston, TX, USA
- Pennington Biomedical Research Center, Louisiana State University, Baton Rouge, LA, USA
| | - Jae W Park
- Department of Integrative Biology and Physiology, University of California Los Angeles, Los Angeles, CA, USA
| | - Johnathon R DiVittorio
- Department of Integrative Biology and Physiology, University of California Los Angeles, Los Angeles, CA, USA
| | - Nilla Sivakumar
- Department of Integrative Biology and Physiology, University of California Los Angeles, Los Angeles, CA, USA
| | - J Edward van Veen
- Department of Integrative Biology and Physiology, University of California Los Angeles, Los Angeles, CA, USA
- Brain Research Institute, University of California Los Angeles, Los Angeles, CA, USA
| | - Sandra Maesta-Pereira
- Department of Psychology, University of California Los Angeles, Los Angeles, CA, USA
| | - Michael Shum
- Division of Endocrinology, Department of Medicine, David Geffen School of Medicine, Los Angeles, CA, USA
- Department of Molecular and Medical Pharmacology, David Geffen School of Medicine, Los Angeles, CA, USA
| | - India Nichols
- Department of Integrative Biology and Physiology, University of California Los Angeles, Los Angeles, CA, USA
| | - Megan G Massa
- Department of Integrative Biology and Physiology, University of California Los Angeles, Los Angeles, CA, USA
- Brain Research Institute, University of California Los Angeles, Los Angeles, CA, USA
| | - Shawn Anderson
- Department of Integrative Biology and Physiology, University of California Los Angeles, Los Angeles, CA, USA
| | - Ketema Paul
- Department of Integrative Biology and Physiology, University of California Los Angeles, Los Angeles, CA, USA
| | - Marc Liesa
- Division of Endocrinology, Department of Medicine, David Geffen School of Medicine, Los Angeles, CA, USA
- Department of Molecular and Medical Pharmacology, David Geffen School of Medicine, Los Angeles, CA, USA
| | - Olujimi A Ajijola
- UCLA Cardiac Arrhythmia Center, Department of Medicine, David Geffen School of Medicine, Los Angeles, CA, USA
| | - Yong Xu
- USDA/ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, Houston, TX, USA
| | - Avishek Adhikari
- Brain Research Institute, University of California Los Angeles, Los Angeles, CA, USA
- Department of Psychology, University of California Los Angeles, Los Angeles, CA, USA
| | - Stephanie M Correa
- Department of Integrative Biology and Physiology, University of California Los Angeles, Los Angeles, CA, USA.
- Brain Research Institute, University of California Los Angeles, Los Angeles, CA, USA.
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10
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Alonso LM, Marder E. Temperature compensation in a small rhythmic circuit. eLife 2020; 9:e55470. [PMID: 32484437 PMCID: PMC7332291 DOI: 10.7554/elife.55470] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2020] [Accepted: 05/31/2020] [Indexed: 12/28/2022] Open
Abstract
Temperature affects the conductances and kinetics of the ionic channels that underlie neuronal activity. Each membrane conductance has a different characteristic temperature sensitivity, which raises the question of how neurons and neuronal circuits can operate robustly over wide temperature ranges. To address this, we employed computational models of the pyloric network of crabs and lobsters. We produced multiple different models that exhibit a triphasic pyloric rhythm over a range of temperatures and explored the dynamics of their currents and how they change with temperature. Temperature can produce smooth changes in the relative contributions of the currents to neural activity so that neurons and networks undergo graceful transitions in the mechanisms that give rise to their activity patterns. Moreover, responses of the models to deletions of a current can be different at high and low temperatures, indicating that even a well-defined genetic or pharmacological manipulation may produce qualitatively distinct effects depending on the temperature.
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Affiliation(s)
- Leandro M Alonso
- Volen Center and Biology Department, Brandeis UniversityWalthamUnited States
| | - Eve Marder
- Volen Center and Biology Department, Brandeis UniversityWalthamUnited States
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11
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Santin JM. Motor inactivity in hibernating frogs: Linking plasticity that stabilizes neuronal function to behavior in the natural environment. Dev Neurobiol 2019; 79:880-891. [DOI: 10.1002/dneu.22721] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Revised: 09/07/2019] [Accepted: 09/30/2019] [Indexed: 12/12/2022]
Affiliation(s)
- Joseph M. Santin
- Department of BiologyUniversity of North Carolina at Greensboro Greensboro North Carolina
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12
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Abstract
Temperature influences physiological processes and can corrupt nervous system function. A modelling study shows how regulation of ion channel expression can establish an acute temperature invariance of neuronal responses despite temperature-dependent and variable ionic conductances.
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Affiliation(s)
- Jan-Hendrik Schleimer
- Institute for Theoretical Biology, Department of Biology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany; Bernstein Center for Computational Neuroscience Berlin, 10115 Berlin, Germany
| | - Susanne Schreiber
- Institute for Theoretical Biology, Department of Biology, Humboldt-Universität zu Berlin, 10115 Berlin, Germany; Bernstein Center for Computational Neuroscience Berlin, 10115 Berlin, Germany.
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13
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Alonso LM, Marder E. Visualization of currents in neural models with similar behavior and different conductance densities. eLife 2019; 8:42722. [PMID: 30702427 PMCID: PMC6395073 DOI: 10.7554/elife.42722] [Citation(s) in RCA: 58] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2018] [Accepted: 01/29/2019] [Indexed: 01/10/2023] Open
Abstract
Conductance-based models of neural activity produce large amounts of data that can be hard to visualize and interpret. We introduce visualization methods to display the dynamics of the ionic currents and to display the models’ response to perturbations. To visualize the currents’ dynamics, we compute the percent contribution of each current and display them over time using stacked-area plots. The waveform of the membrane potential and the contribution of each current change as the models are perturbed. To represent these changes over a range of the perturbation control parameter, we compute and display the distributions of these waveforms. We illustrate these procedures in six examples of bursting model neurons with similar activity but that differ as much as threefold in their conductance densities. These visualization methods provide heuristic insight into why individual neurons or networks with similar behavior can respond widely differently to perturbations. The nervous system contains networks of neurons that generate electrical signals to communicate with each other and the rest of the body. Such electrical signals are due to the flow of ions into or out of the neurons via proteins known as ion channels. Neurons have many different kinds of ion channels that only allow specific ions to pass. Therefore, for a neuron to produce an electrical signal, the activities of several different ion channels need to be coordinated so that they all open and close at certain times. Researchers have previously used data collected from various experiments to develop detailed models of electrical signals in neurons. These models incorporate information about how and when the ion channels may open and close, and can produce numerical simulations of the different ionic currents. However, it can be difficult to display the currents and observe how they change when several different ion channels are involved. Alonso and Marder used simple mathematical concepts to develop new methods to display ionic currents in computational models of neurons. These tools use color to capture changes in ionic currents and provide insights into how the opening and closing of ion channels shape electrical signals. The methods developed by Alonso and Marder could be adapted to display the behavior of biochemical reactions or other topics in biology and may, therefore, be useful to analyze data generated by computational models of many different types of cells. Additionally, these methods may potentially be used as educational tools to illustrate the coordinated opening and closing of ion channels in neurons and other fundamental principles of neuroscience that are otherwise hard to demonstrate.
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Affiliation(s)
- Leandro M Alonso
- Volen Center and Biology Department, Brandeis University, Waltham, United States
| | - Eve Marder
- Volen Center and Biology Department, Brandeis University, Waltham, United States
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14
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Remme MWH, Rinzel J, Schreiber S. Function and energy consumption constrain neuronal biophysics in a canonical computation: Coincidence detection. PLoS Comput Biol 2018; 14:e1006612. [PMID: 30521528 PMCID: PMC6312336 DOI: 10.1371/journal.pcbi.1006612] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2018] [Revised: 12/31/2018] [Accepted: 10/29/2018] [Indexed: 12/19/2022] Open
Abstract
Neural morphology and membrane properties vary greatly between cell types in the nervous system. The computations and local circuit connectivity that neurons support are thought to be the key factors constraining the cells' biophysical properties. Nevertheless, additional constraints can be expected to further shape neuronal design. Here, we focus on a particularly energy-intense system (as indicated by metabolic markers): principal neurons in the medial superior olive (MSO) nucleus of the auditory brainstem. Based on a modeling approach, we show that a trade-off between the level of performance of a functionally relevant computation and energy consumption predicts optimal ranges for cell morphology and membrane properties. The biophysical parameters appear most strongly constrained by functional needs, while energy use is minimized as long as function can be maintained. The key factors that determine model performance and energy consumption are 1) the saturation of the synaptic conductance input and 2) the temporal resolution of the postsynaptic signals as they reach the soma, which is largely determined by active membrane properties. MSO cells seem to operate close to pareto optimality, i.e., the trade-off boundary between performance and energy consumption that is formed by the set of optimal models. Good performance for drastically lower costs could in theory be achieved by small neurons without dendrites, as seen in the avian auditory system, pointing to additional constraints for mammalian MSO cells, including their circuit connectivity.
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Affiliation(s)
- Michiel W. H. Remme
- Institute for Theoretical Biology, Department of Biology, Humboldt-Universität zu Berlin, Berlin, Germany
- * E-mail: (MWHR); (SS)
| | - John Rinzel
- Center for Neural Science, New York University, New York, New York, United States of America
- Courant Institute of Mathematical Sciences, New York University, New York, New York, United States of America
| | - Susanne Schreiber
- Institute for Theoretical Biology, Department of Biology, Humboldt-Universität zu Berlin, Berlin, Germany
- * E-mail: (MWHR); (SS)
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15
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Noradrenergic modulation determines respiratory network activity during temperature changes in the in vitro brainstem of bullfrogs. Respir Physiol Neurobiol 2018; 258:25-31. [DOI: 10.1016/j.resp.2018.10.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2018] [Revised: 09/20/2018] [Accepted: 10/03/2018] [Indexed: 01/22/2023]
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16
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Circuit Robustness to Temperature Perturbation Is Altered by Neuromodulators. Neuron 2018; 100:609-623.e3. [PMID: 30244886 DOI: 10.1016/j.neuron.2018.08.035] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2017] [Revised: 12/15/2017] [Accepted: 08/24/2018] [Indexed: 11/20/2022]
Abstract
In the ocean, the crab Cancer borealis is subject to daily and seasonal temperature changes. Previous work, done in the presence of descending modulatory inputs, had shown that the pyloric rhythm of the crab increases in frequency as temperature increases but maintains its characteristic phase relationships until it "crashes" at extremely high temperatures. To study the interaction between neuromodulators and temperature perturbations, we studied the effects of temperature on preparations from which the descending modulatory inputs were removed. Under these conditions, the pyloric rhythm was destabilized. We then studied the effects of temperature on preparations in the presence of oxotremorine, proctolin, and serotonin. Oxotremorine and proctolin enhanced the robustness of the pyloric rhythm, whereas serotonin made the rhythm less robust. These experiments reveal considerable animal-to-animal diversity in their crash stability, consistent with the interpretation that cryptic differences in many cell and network parameters are revealed by extreme perturbations.
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O’Leary T. Homeostasis, failure of homeostasis and degenerate ion channel regulation. CURRENT OPINION IN PHYSIOLOGY 2018. [DOI: 10.1016/j.cophys.2018.01.006] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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O'Leary T, Marder E. Temperature-Robust Neural Function from Activity-Dependent Ion Channel Regulation. Curr Biol 2016; 26:2935-2941. [PMID: 27746024 DOI: 10.1016/j.cub.2016.08.061] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2016] [Revised: 08/15/2016] [Accepted: 08/24/2016] [Indexed: 11/15/2022]
Abstract
Many species of cold-blooded animals experience substantial and rapid fluctuations in body temperature. Because biological processes are differentially temperature dependent, it is difficult to understand how physiological processes in such animals can be temperature robust [1-8]. Experiments have shown that core neural circuits, such as the pyloric circuit of the crab stomatogastric ganglion (STG), exhibit robust neural activity in spite of large (20°C) temperature fluctuations [3, 5, 7, 8]. This robustness is surprising because (1) each neuron has many different kinds of ion channels with different temperature dependencies (Q10s) that interact in a highly nonlinear way to produce firing patterns and (2) across animals there is substantial variability in conductance densities that nonetheless produce almost identical firing properties. The high variability in conductance densities in these neurons [9, 10] appears to contradict the possibility that robustness is achieved through precise tuning of key temperature-dependent processes. In this paper, we develop a theoretical explanation for how temperature robustness can emerge from a simple regulatory control mechanism that is compatible with highly variable conductance densities [11-13]. The resulting model suggests a general mechanism for how nervous systems and excitable tissues can exploit degenerate relationships among temperature-sensitive processes to achieve robust function.
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Affiliation(s)
- Timothy O'Leary
- Department of Engineering, University of Cambridge, Trumpington Street, Cambridge CB2 1PZ, UK; Volen Center and Biology Department, Brandeis University, Waltham, MA 02454, USA.
| | - Eve Marder
- Volen Center and Biology Department, Brandeis University, Waltham, MA 02454, USA.
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Abstract
Insect hearing has independently evolved multiple times in the context of intraspecific communication and predator detection by transforming proprioceptive organs into ears. Research over the past decade, ranging from the biophysics of sound reception to molecular aspects of auditory transduction to the neuronal mechanisms of auditory signal processing, has greatly advanced our understanding of how insects hear. Apart from evolutionary innovations that seem unique to insect hearing, parallels between insect and vertebrate auditory systems have been uncovered, and the auditory sensory cells of insects and vertebrates turned out to be evolutionarily related. This review summarizes our current understanding of insect hearing. It also discusses recent advances in insect auditory research, which have put forward insect auditory systems for studying biological aspects that extend beyond hearing, such as cilium function, neuronal signal computation, and sensory system evolution.
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Affiliation(s)
- Martin C Göpfert
- Department of Cellular Neurobiology, University of Göttingen, D-37077 Göttingen, Germany;
| | - R Matthias Hennig
- Department of Biology, Behavioral Physiology, Humboldt-Universität zu Berlin, D-10115 Berlin, Germany;
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Eberhard MJB, Schleimer JH, Schreiber S, Ronacher B. A temperature rise reduces trial-to-trial variability of locust auditory neuron responses. J Neurophysiol 2015; 114:1424-37. [PMID: 26041833 DOI: 10.1152/jn.00980.2014] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2014] [Accepted: 06/03/2015] [Indexed: 11/22/2022] Open
Abstract
The neurophysiology of ectothermic animals, such as insects, is affected by environmental temperature, as their body temperature fluctuates with ambient conditions. Changes in temperature alter properties of neurons and, consequently, have an impact on the processing of information. Nevertheless, nervous system function is often maintained over a broad temperature range, exhibiting a surprising robustness to variations in temperature. A special problem arises for acoustically communicating insects, as in these animals mate recognition and mate localization typically rely on the decoding of fast amplitude modulations in calling and courtship songs. In the auditory periphery, however, temporal resolution is constrained by intrinsic neuronal noise. Such noise predominantly arises from the stochasticity of ion channel gating and potentially impairs the processing of sensory signals. On the basis of intracellular recordings of locust auditory neurons, we show that intrinsic neuronal variability on the level of spikes is reduced with increasing temperature. We use a detailed mathematical model including stochastic ion channel gating to shed light on the underlying biophysical mechanisms in auditory receptor neurons: because of a redistribution of channel-induced current noise toward higher frequencies and specifics of the temperature dependence of the membrane impedance, membrane potential noise is indeed reduced at higher temperatures. This finding holds under generic conditions and physiologically plausible assumptions on the temperature dependence of the channels' kinetics and peak conductances. We demonstrate that the identified mechanism also can explain the experimentally observed reduction of spike timing variability at higher temperatures.
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Affiliation(s)
- Monika J B Eberhard
- Department of Biology, Behavioural Physiology Group, Humboldt-Universität zu Berlin, Berlin, Germany;
| | - Jan-Hendrik Schleimer
- Department of Biology, Institute for Theoretical Biology, Humboldt-Universität zu Berlin, Berlin, Germany; and Bernstein Center for Computational Neuroscience Berlin, Berlin, Germany
| | - Susanne Schreiber
- Department of Biology, Institute for Theoretical Biology, Humboldt-Universität zu Berlin, Berlin, Germany; and Bernstein Center for Computational Neuroscience Berlin, Berlin, Germany
| | - Bernhard Ronacher
- Department of Biology, Behavioural Physiology Group, Humboldt-Universität zu Berlin, Berlin, Germany; Bernstein Center for Computational Neuroscience Berlin, Berlin, Germany
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O'Leary T, Sutton AC, Marder E. Computational models in the age of large datasets. Curr Opin Neurobiol 2015; 32:87-94. [PMID: 25637959 DOI: 10.1016/j.conb.2015.01.006] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2014] [Accepted: 01/10/2015] [Indexed: 10/24/2022]
Abstract
Technological advances in experimental neuroscience are generating vast quantities of data, from the dynamics of single molecules to the structure and activity patterns of large networks of neurons. How do we make sense of these voluminous, complex, disparate and often incomplete data? How do we find general principles in the morass of detail? Computational models are invaluable and necessary in this task and yield insights that cannot otherwise be obtained. However, building and interpreting good computational models is a substantial challenge, especially so in the era of large datasets. Fitting detailed models to experimental data is difficult and often requires onerous assumptions, while more loosely constrained conceptual models that explore broad hypotheses and principles can yield more useful insights.
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Affiliation(s)
- Timothy O'Leary
- Biology Department and Volen Center, Brandeis University, Waltham, MA 02454, United States
| | - Alexander C Sutton
- Biology Department and Volen Center, Brandeis University, Waltham, MA 02454, United States
| | - Eve Marder
- Biology Department and Volen Center, Brandeis University, Waltham, MA 02454, United States.
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Marder E, Haddad SA, Goeritz ML, Rosenbaum P, Kispersky T. How can motor systems retain performance over a wide temperature range? Lessons from the crustacean stomatogastric nervous system. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2015; 201:851-6. [PMID: 25552317 PMCID: PMC4552768 DOI: 10.1007/s00359-014-0975-2] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2014] [Revised: 12/04/2014] [Accepted: 12/09/2014] [Indexed: 10/31/2022]
Abstract
Marine invertebrates, such as lobsters and crabs, deal with a widely and wildly fluctuating temperature environment. Here, we describe the effects of changing temperature on the motor patterns generated by the stomatogastric nervous system of the crab, Cancer borealis. Over a broad range of "permissive" temperatures, the pyloric rhythm increases in frequency but maintains its characteristic phase relationships. Nonetheless, at more extreme high temperatures, the normal triphasic pyloric rhythm breaks down, or "crashes". We present both experimental and computational approaches to understanding the stability of both single neurons and networks to temperature perturbations, and discuss data that shows that the "crash" temperatures themselves may be environmentally regulated. These approaches provide insight into how the nervous system can be stable to a global perturbation, such as temperature, in spite of the fact that all biological processes are temperature dependent.
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Affiliation(s)
- Eve Marder
- Volen Center and Biology Department, MS 013, Brandeis University, 415 South St., Waltham, MA, 02454, USA
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Eberhard MJB, Gordon SD, Windmill JFC, Ronacher B. Temperature effects on the tympanal membrane and auditory receptor neurons in the locust. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 2014; 200:837-47. [PMID: 25048563 PMCID: PMC4138429 DOI: 10.1007/s00359-014-0926-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2014] [Revised: 06/17/2014] [Accepted: 06/29/2014] [Indexed: 11/29/2022]
Abstract
Poikilothermic animals are affected by variations in environmental temperature, as the basic properties of nerve cells and muscles are altered. Nevertheless, insect sensory systems, such as the auditory system, need to function effectively over a wide range of temperatures, as sudden changes of up to 10 °C or more are common. We investigated the performance of auditory receptor neurons and properties of the tympanal membrane of Locusta migratoria in response to temperature changes. Intracellular recordings of receptors at two temperatures (21 and 28 °C) revealed a moderate increase in spike rate with a mean Q10 of 1.4. With rising temperature, the spike rate-intensity-functions exhibited small decreases in thresholds and expansions of the dynamic range, while spike durations decreased. Tympanal membrane displacement, investigated using microscanning laser vibrometry, exhibited a small temperature effect, with a Q10 of 1.2. These findings suggest that locusts are affected by shifts in temperature at the periphery of the auditory pathway, but the effects on spike rate, sensitivity, and tympanal membrane displacement are small. Robust encoding of acoustic signals by only slightly temperature-dependent receptor neurons and almost temperature-independent tympanal membrane properties might enable locusts and grasshoppers to reliably identify sounds in spite of changes of their body temperature.
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Affiliation(s)
- Monika J. B. Eberhard
- Department of Biology, Behavioural Physiology Group, Humboldt-Universität zu Berlin, Invalidenstrasse 43, 10115 Berlin, Germany
| | - Shira D. Gordon
- Department of Electronic and Electrical Engineering, Centre for Ultrasonic Engineering, University of Strathclyde, Royal College Building, 204 George Street, Glasgow, G1 1XW UK
- Present Address: Department of Biological Sciences, Dartmouth College, 78 College Street, Hanover, NH 03755 USA
| | - James F. C. Windmill
- Department of Electronic and Electrical Engineering, Centre for Ultrasonic Engineering, University of Strathclyde, Royal College Building, 204 George Street, Glasgow, G1 1XW UK
| | - Bernhard Ronacher
- Department of Biology, Behavioural Physiology Group, Humboldt-Universität zu Berlin, Invalidenstrasse 43, 10115 Berlin, Germany
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