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Montagni E, Resta F, Tort-Colet N, Scaglione A, Mazzamuto G, Destexhe A, Pavone FS, Allegra Mascaro AL. Mapping brain state-dependent sensory responses across the mouse cortex. iScience 2024; 27:109692. [PMID: 38689637 PMCID: PMC11059133 DOI: 10.1016/j.isci.2024.109692] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 02/20/2024] [Accepted: 04/05/2024] [Indexed: 05/02/2024] Open
Abstract
Sensory information must be integrated across a distributed brain network for stimulus processing and perception. Recent studies have revealed specific spatiotemporal patterns of cortical activation for the early and late components of sensory-evoked responses, which are associated with stimulus features and perception, respectively. Here, we investigated how the brain state influences the sensory-evoked activation across the mouse cortex. We utilized isoflurane to modulate the brain state and conducted wide-field calcium imaging of Thy1-GCaMP6f mice to monitor distributed activation evoked by multi-whisker stimulation. Our findings reveal that the level of anesthesia strongly shapes the spatiotemporal features and the functional connectivity of the sensory-activated network. As anesthesia levels decrease, we observe increasingly complex responses, accompanied by the emergence of the late component within the sensory-evoked response. The persistence of the late component under anesthesia raises new questions regarding the potential existence of perception during unconscious states.
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Affiliation(s)
- Elena Montagni
- European Laboratory for Non-Linear Spectroscopy (LENS), Sesto Fiorentino, Italy
- Neuroscience Institute, National Research Council, Pisa, Italy
| | - Francesco Resta
- European Laboratory for Non-Linear Spectroscopy (LENS), Sesto Fiorentino, Italy
- National Institute of Optics, National Research Council, Sesto Fiorentino, Italy
| | - Núria Tort-Colet
- Paris-Saclay University, CNRS, Institut des Neurosciences (NeuroPSI), Saclay, France
- Barcelonaβ Brain Research Center, Barcelona, Spain
- Hospital del Mar Medical Research Institute, Barcelona, Spain
| | - Alessandro Scaglione
- European Laboratory for Non-Linear Spectroscopy (LENS), Sesto Fiorentino, Italy
- Department of Physics and Astronomy, University of Florence, Sesto Fiorentino, Italy
| | - Giacomo Mazzamuto
- European Laboratory for Non-Linear Spectroscopy (LENS), Sesto Fiorentino, Italy
- National Institute of Optics, National Research Council, Sesto Fiorentino, Italy
- Department of Physics and Astronomy, University of Florence, Sesto Fiorentino, Italy
| | - Alain Destexhe
- Paris-Saclay University, CNRS, Institut des Neurosciences (NeuroPSI), Saclay, France
| | - Francesco Saverio Pavone
- European Laboratory for Non-Linear Spectroscopy (LENS), Sesto Fiorentino, Italy
- National Institute of Optics, National Research Council, Sesto Fiorentino, Italy
- Department of Physics and Astronomy, University of Florence, Sesto Fiorentino, Italy
| | - Anna Letizia Allegra Mascaro
- European Laboratory for Non-Linear Spectroscopy (LENS), Sesto Fiorentino, Italy
- Neuroscience Institute, National Research Council, Pisa, Italy
- Department of Physics and Astronomy, University of Florence, Sesto Fiorentino, Italy
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2
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Scaglione A, Resta F, Goretti F, Pavone FS. Group ICA of wide-field calcium imaging data reveals the retrosplenial cortex as a major contributor to cortical activity during anesthesia. Front Cell Neurosci 2024; 18:1258793. [PMID: 38799987 PMCID: PMC11116703 DOI: 10.3389/fncel.2024.1258793] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Accepted: 03/14/2024] [Indexed: 05/29/2024] Open
Abstract
Large-scale cortical dynamics play a crucial role in many cognitive functions such as goal-directed behaviors, motor learning and sensory processing. It is well established that brain states including wakefulness, sleep, and anesthesia modulate neuronal firing and synchronization both within and across different brain regions. However, how the brain state affects cortical activity at the mesoscale level is less understood. This work aimed to identify the cortical regions engaged in different brain states. To this end, we employed group ICA (Independent Component Analysis) to wide-field imaging recordings of cortical activity in mice during different anesthesia levels and the awake state. Thanks to this approach we identified independent components (ICs) representing elements of the cortical networks that are common across subjects under decreasing levels of anesthesia toward the awake state. We found that ICs related to the retrosplenial cortices exhibited a pronounced dependence on brain state, being most prevalent in deeper anesthesia levels and diminishing during the transition to the awake state. Analyzing the occurrence of the ICs we found that activity in deeper anesthesia states was characterized by a strong correlation between the retrosplenial components and this correlation decreases when transitioning toward wakefulness. Overall these results indicate that during deeper anesthesia states coactivation of the posterior-medial cortices is predominant over other connectivity patterns, whereas a richer repertoire of dynamics is expressed in lighter anesthesia levels and the awake state.
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Affiliation(s)
- Alessandro Scaglione
- Department of Physics and Astronomy, University of Florence, Florence, Italy
- European Laboratory for Non-Linear Spectroscopy (LENS), Florence, Italy
| | - Francesco Resta
- European Laboratory for Non-Linear Spectroscopy (LENS), Florence, Italy
- National Institute of Optics, National Research Council (INO-CNR), Sesto Fiorentino, Italy
| | - Francesco Goretti
- European Laboratory for Non-Linear Spectroscopy (LENS), Florence, Italy
| | - Francesco S. Pavone
- Department of Physics and Astronomy, University of Florence, Florence, Italy
- European Laboratory for Non-Linear Spectroscopy (LENS), Florence, Italy
- National Institute of Optics, National Research Council (INO-CNR), Sesto Fiorentino, Italy
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Uesaki M, Furlan M, Smith AT, Takemura H. White matter tracts adjacent to the human cingulate sulcus visual area (CSv). PLoS One 2024; 19:e0300575. [PMID: 38578743 PMCID: PMC10997140 DOI: 10.1371/journal.pone.0300575] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Accepted: 02/29/2024] [Indexed: 04/07/2024] Open
Abstract
Human cingulate sulcus visual area (CSv) was first identified as an area that responds selectively to visual stimulation indicative of self-motion. It was later shown that the area is also sensitive to vestibular stimulation as well as to bodily motion compatible with locomotion. Understanding the anatomical connections of CSv will shed light on how CSv interacts with other parts of the brain to perform information processing related to self-motion and navigation. A previous neuroimaging study (Smith et al. 2018, Cerebral Cortex, 28, 3685-3596) used diffusion-weighted magnetic resonance imaging (dMRI) to examine the structural connectivity of CSv, and demonstrated connections between CSv and the motor and sensorimotor areas in the anterior and posterior cingulate sulcus. The present study aimed to complement this work by investigating the relationship between CSv and adjacent major white matter tracts, and to map CSv's structural connectivity onto known white matter tracts. By re-analysing the dataset from Smith et al. (2018), we identified bundles of fibres (i.e. streamlines) from the whole-brain tractography that terminate near CSv. We then assessed to which white matter tracts those streamlines may belong based on previously established anatomical prescriptions. We found that a significant number of CSv streamlines can be categorised as part of the dorsalmost branch of the superior longitudinal fasciculus (SLF I) and the cingulum. Given current thinking about the functions of these white matter tracts, our results support the proposition that CSv provides an interface between sensory and motor systems in the context of self-motion.
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Affiliation(s)
- Maiko Uesaki
- Center for Information and Neural Networks (CiNet), Advanced ICT Research Institute, National Institute of Information and Communications Technology (NICT), Suita, Osaka, Japan
- Graduate School of Frontier Biosciences, Osaka University, Suita, Osaka, Japan
- Open Innovation & Collaboration Research Organization, Ritsumeikan University, Ibaraki, Osaka, Japan
| | - Michele Furlan
- Scuola Internazionale Superiore di Studi Avanzati (SISSA), Trieste, Trieste, Italy
| | - Andrew T. Smith
- Department of Psychology, Royal Holloway, University of London, Egham, Surrey, United Kingdom
| | - Hiromasa Takemura
- Center for Information and Neural Networks (CiNet), Advanced ICT Research Institute, National Institute of Information and Communications Technology (NICT), Suita, Osaka, Japan
- Division of Sensory and Cognitive Brain Mapping, Department of System Neuroscience, National Institute for Physiological Sciences, Okazaki, Aichi, Japan
- Graduate Institute for Advanced Studies, SOKENDAI, Hayama, Kanagawa, Japan
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Golestani AM, Chen JJ. Comparing data-driven physiological denoising approaches for resting-state fMRI: implications for the study of aging. Front Neurosci 2024; 18:1223230. [PMID: 38379761 PMCID: PMC10876882 DOI: 10.3389/fnins.2024.1223230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Accepted: 01/17/2024] [Indexed: 02/22/2024] Open
Abstract
Introduction Physiological nuisance contributions by cardiac and respiratory signals have a significant impact on resting-state fMRI data quality. As these physiological signals are often not recorded, data-driven denoising methods are commonly used to estimate and remove physiological noise from fMRI data. To investigate the efficacy of these denoising methods, one of the first steps is to accurately capture the cardiac and respiratory signals, which requires acquiring fMRI data with high temporal resolution. Methods In this study, we used such high-temporal resolution fMRI data to evaluate the effectiveness of several data-driven denoising methods, including global-signal regression (GSR), white matter and cerebrospinal fluid regression (WM-CSF), anatomical (aCompCor) and temporal CompCor (tCompCor), ICA-AROMA. Our analysis focused on the consequence of changes in low-frequency, cardiac and respiratory signal power, as well as age-related differences in terms of functional connectivity (fcMRI). Results Our results confirm that the ICA-AROMA and GSR removed the most physiological noise but also more low-frequency signals. These methods are also associated with substantially lower age-related fcMRI differences. On the other hand, aCompCor and tCompCor appear to be better at removing high-frequency physiological signals but not low-frequency signal power. These methods are also associated with relatively higher age-related fcMRI differences, whether driven by neuronal signal or residual artifact. These results were reproduced in data downsampled to represent conventional fMRI sampling frequency. Lastly, methods differ in performance depending on the age group. Discussion While this study cautions direct comparisons of fcMRI results based on different denoising methods in the study of aging, it also enhances the understanding of different denoising methods in broader fcMRI applications.
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Affiliation(s)
- Ali M. Golestani
- Department of Physics and Astronomy, University of Calgary, Calgary, AB, Canada
- Department of Oncology, Cumming School of Medicine, University of Calgary, Calgary, AB, Canada
| | - J. Jean Chen
- Rotman Research Institute at Baycrest, Toronto, ON, Canada
- Department of Medical Biophysics, University of Toronto, Toronto, ON, Canada
- Department of Biomedical Engineering, University of Toronto, Toronto, ON, Canada
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Greene AS, Horien C, Barson D, Scheinost D, Constable RT. Why is everyone talking about brain state? Trends Neurosci 2023; 46:508-524. [PMID: 37164869 PMCID: PMC10330476 DOI: 10.1016/j.tins.2023.04.001] [Citation(s) in RCA: 17] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Revised: 03/17/2023] [Accepted: 04/07/2023] [Indexed: 05/12/2023]
Abstract
The rapid and coordinated propagation of neural activity across the brain provides the foundation for complex behavior and cognition. Technical advances across neuroscience subfields have advanced understanding of these dynamics, but points of convergence are often obscured by semantic differences, creating silos of subfield-specific findings. In this review we describe how a parsimonious conceptualization of brain state as the fundamental building block of whole-brain activity offers a common framework to relate findings across scales and species. We present examples of the diverse techniques commonly used to study brain states associated with physiology and higher-order cognitive processes, and discuss how integration across them will enable a more comprehensive and mechanistic characterization of the neural dynamics that are crucial to survival but are disrupted in disease.
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Affiliation(s)
- Abigail S Greene
- Interdepartmental Neuroscience Program, Yale School of Medicine, New Haven, CT 06520, USA; MD/PhD program, Yale School of Medicine, New Haven, CT 06520, USA.
| | - Corey Horien
- Interdepartmental Neuroscience Program, Yale School of Medicine, New Haven, CT 06520, USA; MD/PhD program, Yale School of Medicine, New Haven, CT 06520, USA.
| | - Daniel Barson
- Interdepartmental Neuroscience Program, Yale School of Medicine, New Haven, CT 06520, USA; MD/PhD program, Yale School of Medicine, New Haven, CT 06520, USA; Department of Neuroscience, Yale School of Medicine, New Haven, CT 06520, USA.
| | - Dustin Scheinost
- Interdepartmental Neuroscience Program, Yale School of Medicine, New Haven, CT 06520, USA; Department of Radiology and Biomedical Imaging, Yale School of Medicine, New Haven, CT 06520, USA; Department of Biomedical Engineering, Yale School of Engineering and Applied Science, New Haven, CT 06520, USA; Department of Statistics and Data Science, Yale University, New Haven, CT 06511, USA; Child Study Center, Yale School of Medicine, New Haven, CT 06520, USA
| | - R Todd Constable
- Interdepartmental Neuroscience Program, Yale School of Medicine, New Haven, CT 06520, USA; Department of Radiology and Biomedical Imaging, Yale School of Medicine, New Haven, CT 06520, USA; Department of Biomedical Engineering, Yale School of Engineering and Applied Science, New Haven, CT 06520, USA; Department of Neurosurgery, Yale School of Medicine, New Haven, CT 06520, USA
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6
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Astrocyte strategies in the energy-efficient brain. Essays Biochem 2023; 67:3-16. [PMID: 36350053 DOI: 10.1042/ebc20220077] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Revised: 10/11/2022] [Accepted: 10/13/2022] [Indexed: 11/10/2022]
Abstract
Astrocytes generate ATP through glycolysis and mitochondrion respiration, using glucose, lactate, fatty acids, amino acids, and ketone bodies as metabolic fuels. Astrocytic mitochondria also participate in neuronal redox homeostasis and neurotransmitter recycling. In this essay, we aim to integrate the multifaceted evidence about astrocyte bioenergetics at the cellular and systems levels, with a focus on mitochondrial oxidation. At the cellular level, the use of fatty acid β-oxidation and the existence of molecular switches for the selection of metabolic mode and fuels are examined. At the systems level, we discuss energy audits of astrocytes and how astrocytic Ca2+ signaling might contribute to the higher performance and lower energy consumption of the brain as compared to engineered circuits. We finish by examining the neural-circuit dysregulation and behavior impairment associated with alterations of astrocytic mitochondria. We conclude that astrocytes may contribute to brain energy efficiency by coupling energy, redox, and computational homeostasis in neural circuits.
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Helwegen K, Libedinsky I, van den Heuvel MP. Statistical power in network neuroscience. Trends Cogn Sci 2023; 27:282-301. [PMID: 36725422 DOI: 10.1016/j.tics.2022.12.011] [Citation(s) in RCA: 14] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Revised: 12/14/2022] [Accepted: 12/15/2022] [Indexed: 01/31/2023]
Abstract
Network neuroscience has emerged as a leading method to study brain connectivity. The success of these investigations is dependent not only on approaches to accurately map connectivity but also on the ability to detect real effects in the data - that is, statistical power. We review the state of statistical power in the field and discuss sample size, effect size, measurement error, and network topology as key factors that influence the power of brain connectivity investigations. We use the term 'differential power' to describe how power can vary between nodes, edges, and graph metrics, leaving traces in both positive and negative connectome findings. We conclude with strategies for working with, rather than around, power in connectivity studies.
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Affiliation(s)
- Koen Helwegen
- Department of Complex Trait Genetics, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands
| | - Ilan Libedinsky
- Department of Complex Trait Genetics, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands
| | - Martijn P van den Heuvel
- Department of Complex Trait Genetics, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands; Department of Child and Adolescent Psychiatry and Psychology, Amsterdam UMC location Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
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8
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Assessing brain state and anesthesia level with two-photon calcium signals. Sci Rep 2023; 13:3183. [PMID: 36823228 PMCID: PMC9950142 DOI: 10.1038/s41598-023-30224-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Accepted: 02/17/2023] [Indexed: 02/25/2023] Open
Abstract
Brain states, such as wake, sleep, or different depths of anesthesia are usually assessed using electrophysiological techniques, such as the local field potential (LFP) or the electroencephalogram (EEG), which are ideal signals for detecting activity patterns such as asynchronous or oscillatory activities. However, it is technically challenging to have these types of measures during calcium imaging recordings such as two-photon or wide-field techniques. Here, using simultaneous two-photon and LFP measurements, we demonstrate that despite the slower dynamics of the calcium signal, there is a high correlation between the LFP and two-photon signals taken from the neuropil outside neuronal somata. Moreover, we find the calcium signal to be systematically delayed from the LFP signal, and we use a model to show that the delay between the two signals is due to the physical distance between the recording sites. These results suggest that calcium signals alone can be used to detect activity patterns such as slow oscillations and ultimately assess the brain state and level of anesthesia.
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9
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Behavioral Phenotyping of Bbs6 and Bbs8 Knockout Mice Reveals Major Alterations in Communication and Anxiety. Int J Mol Sci 2022; 23:ijms232314506. [PMID: 36498834 PMCID: PMC9741393 DOI: 10.3390/ijms232314506] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2022] [Revised: 11/14/2022] [Accepted: 11/17/2022] [Indexed: 11/23/2022] Open
Abstract
The primary cilium is an organelle with a central role in cellular signal perception. Mutations in genes that encode cilia-associated proteins result in a collection of human syndromes collectively termed ciliopathies. Of these, the Bardet-Biedl syndrome (BBS) is considered one of the archetypical ciliopathies, as patients exhibit virtually all respective clinical phenotypes, such as pathological changes of the retina or the kidney. However, the behavioral phenotype associated with ciliary dysfunction has received little attention thus far. Here, we extensively characterized the behavior of two rodent models of BBS, Bbs6/Mkks, and Bbs8/Ttc8 knockout mice concerning social behavior, anxiety, and cognitive abilities. While learning tasks remained unaffected due to the genotype, we observed diminished social behavior and altered communication. Additionally, Bbs knockout mice displayed reduced anxiety. This was not due to altered adrenal gland function or corticosterone serum levels. However, hypothalamic expression of Lsamp, the limbic system associated protein, and Adam10, a protease acting on Lsamp, were reduced. This was accompanied by changes in characteristics of adult hypothalamic neurosphere cultures. In conclusion, we provide evidence that behavioral changes in Bbs knockout mice are mainly found in social and anxiety traits and might be based on an altered architecture of the hypothalamus.
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10
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Yang Y, Zhu Q, Wang L, Gao D, Wang Z, Geng Z. Effects of hypertension and aging on brain function in spontaneously hypertensive rats: a longitudinal resting-state functional magnetic resonance imaging study. Cereb Cortex 2022; 33:5493-5500. [PMID: 36408643 PMCID: PMC10152091 DOI: 10.1093/cercor/bhac436] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 10/07/2022] [Accepted: 10/09/2022] [Indexed: 11/22/2022] Open
Abstract
Abstract
To investigate the dynamic evolution of brain function under the comorbidities of hypertension and aging. Resting-state functional magnetic resonance imaging scans were longitudinally acquired at 10, 24, and 52 weeks in spontaneously hypertensive rats (SHRs) and Wistar-Kyoto rats. We computed the mean amplitude of low-frequency fluctuation (mALFF), mean regional homogeneity (mReHo), and functional connectivity (FC). There was no interaction between hypertension and aging on brain function. The main effect of aging reflects primarily the cumulative increase of brain activity, especially the increase of mALFF in amygdala and mReHo in cingulate cortex, accompanied by the decrease of brain activity. The main effect of hypertension reflects primarily decreased brain activity in default modal network, accompanied by increased brain activity. The main effect of aging shows reduced brain FC as early as 24 weeks, and the main effect of hypertension shows higher brain FC in SHRs. The novel discovery is that 1 brain FC network increased linearly with age in SHRs, in addition to the linearly decreasing FC. Hypertension and aging independently contribute to spatiotemporal alterations in brain function in SHRs following ongoing progression and compensation. This study provides new insight into the dynamic characteristics of brain function.
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Affiliation(s)
- Yingying Yang
- Hebei Medical University Medical Imaging Specialty, Graduate School, , Shijiazhuang 050000 , China
- The First Hospital of Qinhuangdao Department of Imaging, , Qinhuangdao 066000 , China
| | - Qingfeng Zhu
- The Second Hospital of Hebei Medical University Department of Medical Imaging, , Shijiazhuang 050000 , China
| | - Lixin Wang
- The Second Hospital of Hebei Medical University Department of Medical Imaging, , Shijiazhuang 050000 , China
| | - Duo Gao
- The Second Hospital of Hebei Medical University Department of Medical Imaging, , Shijiazhuang 050000 , China
| | - Zhanqiu Wang
- The First Hospital of Qinhuangdao Department of Imaging, , Qinhuangdao 066000 , China
| | - Zuojun Geng
- The Second Hospital of Hebei Medical University Department of Medical Imaging, , Shijiazhuang 050000 , China
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11
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Mind blanking is a distinct mental state linked to a recurrent brain profile of globally positive connectivity during ongoing mentation. Proc Natl Acad Sci U S A 2022; 119:e2200511119. [PMID: 36194631 PMCID: PMC9564098 DOI: 10.1073/pnas.2200511119] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Mind blanking (MB) is a waking state during which we do not report any mental content. The phenomenology of MB challenges the view of a constantly thinking mind. Here, we comprehensively characterize the MB's neurobehavioral profile with the aim to delineate its role during ongoing mentation. Using functional MRI experience sampling, we show that the reportability of MB is less frequent, faster, and with lower transitional dynamics than other mental states, pointing to its role as a transient mental relay. Regarding its neural underpinnings, we observed higher global signal amplitude during MB reports, indicating a distinct physiological state. Using the time-varying functional connectome, we show that MB reports can be classified with high accuracy, suggesting that MB has a unique neural composition. Indeed, a pattern of global positive-phase coherence shows the highest similarity to the connectivity patterns associated with MB reports. We interpret this pattern's rigid signal architecture as hindering content reportability due to the brain's inability to differentiate signals in an informative way. Collectively, we show that MB has a unique neurobehavioral profile, indicating that nonreportable mental events can happen during wakefulness. Our results add to the characterization of spontaneous mentation and pave the way for more mechanistic investigations of MB's phenomenology.
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12
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Schwalm M, Tabuena DR, Easton C, Richner TJ, Mourad P, Watari H, Moody WJ, Stroh A. Functional States Shape the Spatiotemporal Representation of Local and Cortex-wide Neural Activity in Mouse Sensory Cortex. J Neurophysiol 2022; 128:763-777. [PMID: 35975935 DOI: 10.1152/jn.00424.2021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
The spatiotemporal representation of neural activity during rest and upon sensory stimulation in cortical areas is highly dynamic, and may be predominantly governed by cortical state. On the mesoscale level, intrinsic neuronal activity ranges from a persistent state, generally associated with a sustained depolarization of neurons, to a bimodal, slow-wave like state with bursts of neuronal activation, alternating with silent periods. These different activity states are prevalent under certain types of sedatives, or are associated with specific behavioral or vigilance conditions. Neurophysiological experiments assessing circuit activity, usually assume a constant underlying state, yet reports of variability of neuronal responses under seemingly constant conditions are common in the field. Even when a certain type of neural activity or cortical state can stably be maintained over time, the associated response properties are highly relevant for explaining experimental outcomes. Here we describe the spatiotemporal characteristics of ongoing activity and sensory evoked responses under two predominant functional states in the sensory cortices of mice: persistent activity (PA) and slow wave activity (SWA). Using electrophysiological recordings, and local and wide-field calcium recordings, we examine whether spontaneous and sensory evoked neuronal activity propagate throughout the cortex in a state dependent manner. We find that PA and SWA differ in their spatiotemporal characteristics which determine the cortical network's response to a sensory stimulus. During PA state, sensory stimulation elicits gamma-based short-latency responses which precisely follow each stimulation pulse and are prone to adaptation upon higher stimulation frequencies. Sensory responses during SWA are more variable, dependent on refractory periods following spontaneous slow waves. While spontaneous slow waves propagated in anterior-posterior direction in a majority of observations, the direction of propagation of stimulus-elicited wave depends on the sensory modality. These findings suggest that cortical state explains variance and should be considered when investigating multi-scale correlates of functional neurocircuit activity.
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Affiliation(s)
- Miriam Schwalm
- Institute of Pathophysiology, University Medical Center Mainz, Mainz, Germany.,Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, United States
| | - Dennis R Tabuena
- Department of Biology, University of Washington, Seattle, WA, United States
| | - Curtis Easton
- Department of Biology, University of Washington, Seattle, WA, United States
| | - Thomas J Richner
- Department of Biology, University of Washington, Seattle, WA, United States
| | - Pierre Mourad
- Department of Biology, University of Washington, Seattle, WA, United States
| | - Hirofumi Watari
- Institute of Pathophysiology, University Medical Center Mainz, Mainz, Germany.,Department of Biology, University of Washington, Seattle, WA, United States
| | - William J Moody
- Department of Biology, University of Washington, Seattle, WA, United States
| | - Albrecht Stroh
- Institute of Pathophysiology, University Medical Center Mainz, Mainz, Germany.,Leibniz Institute for Resilience Research, Mainz, Germany
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13
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Cleppien D, Aedo-Jury F, Stroh A. Beyond correlation: functional OPTO-MAgnetic Integration Concept (OPTOMAIC) to reveal the brain-wide signature of local neuronal signals-of-interest. NEUROPHOTONICS 2022; 9:032213. [PMID: 35813935 PMCID: PMC9259002 DOI: 10.1117/1.nph.9.3.032213] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Accepted: 06/01/2022] [Indexed: 06/15/2023]
Abstract
Significance: Due to the vascular origin of the fMRI signal, the spatiotemporally precise interpretation of the blood oxygen level-dependent (BOLD) response as brain-wide correlate of neuronal activity is limited. Optical fiber-based neuronal calcium recordings provide a specific and temporally highly resolved signal yet lacking brain-wide coverage. The cross-modal integration of both modalities holds the potential for unique synergies. Aim: The OPTO-MAgnetic Integration Concept (OPTOMAIC) extracts the very fraction of the BOLD response that reacts to optically recorded neuronal signals-of-interest. Approach and Results: First, OPTOMAIC identifies the trials containing neuronal signal-of-interest (SoI) in the optical recordings. The long duration of the BOLD response is considered by calculating and thresholding neuronal interevent intervals. The resulting optical regression vector is probed for a positive BOLD response with single-event and single-voxel resolution, generating a BOLD response matrix containing only those events and voxels with both a neuronal SoI and a positive fMRI signal increase. Last, the onset of the BOLD response is being quantified, representing the section of the BOLD response most reliably reporting at least components of the neuronal signal. Conclusions: The seven OPTOMAIC steps result in a brain-wide BOLD signature reflecting the underlying neuronal SoI with utmost cross-modal integration depth and taking full advantage of the specific strengths of each method.
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Affiliation(s)
- Dirk Cleppien
- Leibniz Institute for Resilience Research, Mainz, Germany
| | | | - Albrecht Stroh
- Leibniz Institute for Resilience Research, Mainz, Germany
- Institute of Pathophysiology, University Medical Center of the Johannes Gutenberg University, Mainz, Germany
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14
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Sirmpilatze N, Mylius J, Ortiz-Rios M, Baudewig J, Paasonen J, Golkowski D, Ranft A, Ilg R, Gröhn O, Boretius S. Spatial signatures of anesthesia-induced burst-suppression differ between primates and rodents. eLife 2022; 11:74813. [PMID: 35607889 PMCID: PMC9129882 DOI: 10.7554/elife.74813] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2021] [Accepted: 05/01/2022] [Indexed: 01/19/2023] Open
Abstract
During deep anesthesia, the electroencephalographic (EEG) signal of the brain alternates between bursts of activity and periods of relative silence (suppressions). The origin of burst-suppression and its distribution across the brain remain matters of debate. In this work, we used functional magnetic resonance imaging (fMRI) to map the brain areas involved in anesthesia-induced burst-suppression across four mammalian species: humans, long-tailed macaques, common marmosets, and rats. At first, we determined the fMRI signatures of burst-suppression in human EEG-fMRI data. Applying this method to animal fMRI datasets, we found distinct burst-suppression signatures in all species. The burst-suppression maps revealed a marked inter-species difference: in rats, the entire neocortex engaged in burst-suppression, while in primates most sensory areas were excluded—predominantly the primary visual cortex. We anticipate that the identified species-specific fMRI signatures and whole-brain maps will guide future targeted studies investigating the cellular and molecular mechanisms of burst-suppression in unconscious states. The development of anesthesia was a significant advance in medicine. It allows individuals to undergo surgery without feeling pain or remembering the experience. But scientists still do not know how anesthesia works. During anesthesia, scientists have measured brain activity using electroencephalograms (EEG) and found that the brain appears to turn on and off. Comatose patients also have similar switches between bursts of electrical activity and periods of silence. This burst-suppression pattern may be related to unconsciousness. But scientists still have many questions about how anesthesia causes burst-suppression. One challenge is that while an EEG can tell scientists when the brain turns on and off, it does not show exactly where this occurs. Another imaging method called functional Magnetic Resonance Imaging (fMRI) may fill this gap by allowing scientists to map where the brain activity occurs. Sirmpilatze et al. have created detailed maps of burst-suppression in humans, primates, and rats under anesthesia by analyzing brain scans using fMRI. In rats, the entire outer layer or cortex of the brain underwent a synchronized pattern of burst-suppression. In humans and primates, areas of the brain like those responsible for eyesight did not follow the rest of the cortex in switching on and off. The experiments reveal crucial differences in how rats and humans and other primates respond to anesthesia. The fMRI mapping technique Sirmpilatze et al. created may help scientists learn more about these differences and why some parts of human brains do not undergo burst-suppression. This may help scientists learn more about unconsciousness and help improve anesthesia or the care of comatose patients.
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Affiliation(s)
- Nikoloz Sirmpilatze
- Functional Imaging Laboratory, German Primate Center - Leibniz Institute for Primate Research, Göttingen, Germany.,Georg-August University of Göttingen, Göttingen, Germany.,International Max Planck Research School for Neurosciences, Göttingen, Germany
| | - Judith Mylius
- Functional Imaging Laboratory, German Primate Center - Leibniz Institute for Primate Research, Göttingen, Germany
| | - Michael Ortiz-Rios
- Functional Imaging Laboratory, German Primate Center - Leibniz Institute for Primate Research, Göttingen, Germany
| | - Jürgen Baudewig
- Functional Imaging Laboratory, German Primate Center - Leibniz Institute for Primate Research, Göttingen, Germany
| | - Jaakko Paasonen
- A.I.V. Institute for Molecular Sciences, University of Eastern Finland, Kuopio, Finland
| | - Daniel Golkowski
- Department of Neurology, Klinikum Rechts der Isar der Technischen Universität München, Munich, Germany.,Department of Neurology, Heidelberg University Hospital, Heidelberg, Germany
| | - Andreas Ranft
- Department of Anesthesiology and Intensive Care Medicine, Klinikum Rechts der Isar der Technischen Universität München, Munich, Germany
| | - Rüdiger Ilg
- Department of Neurology, Klinikum Rechts der Isar der Technischen Universität München, Munich, Germany.,Department of Neurology, Asklepios Stadtklinik Bad Tölz, Bad Tölz, Germany
| | - Olli Gröhn
- A.I.V. Institute for Molecular Sciences, University of Eastern Finland, Kuopio, Finland
| | - Susann Boretius
- Functional Imaging Laboratory, German Primate Center - Leibniz Institute for Primate Research, Göttingen, Germany.,Georg-August University of Göttingen, Göttingen, Germany.,International Max Planck Research School for Neurosciences, Göttingen, Germany.,Leibniz Science Campus Primate Cognition, Göttingen, Germany
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15
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Non-ablative doses of focal ionizing radiation alters function of central neural circuits. Brain Stimul 2022; 15:586-597. [PMID: 35395424 DOI: 10.1016/j.brs.2022.04.001] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Revised: 03/22/2022] [Accepted: 04/01/2022] [Indexed: 12/30/2022] Open
Abstract
BACKGROUND Modulation of pathological neural circuit activity in the brain with a minimum of complications is an area of intense interest. OBJECTIVE The goal of the study was to alter neurons' physiological states without apparent damage of cellular integrity using stereotactic radiosurgery (SRS). METHODS We treated a 7.5 mm-diameter target on the visual cortex of Göttingen minipigs with doses of 40, 60, 80, and 100 Gy. Six months post-irradiation, the pigs were implanted with a 9 mm-wide, eight-shank multi-electrode probe, which spanned the radiation focus as well as the low-exposure neighboring areas. RESULTS Doses of 40 Gy led to an increase of spontaneous firing rate, six months post-irradiation, while doses of 60 Gy and greater were associated with a decrease. Subjecting the animals to visual stimuli resulted in typical visual evoked potentials (VEP). At 40 Gy, a significant reduction of the P1 peak time, indicative of higher network excitability was observed. At 80 Gy, P1 peak time was not affected, while a minor reduction at 60 Gy was seen. No distance-dependent effects on spontaneous firing rate, or on VEP were observed. Post-mortem histology revealed no evidence of necrosis at doses below 60 Gy. In an in vitro assay comprising of iPS-derived human neuron-astrocyte co-cultures, we found a higher vulnerability of inhibitory neurons than excitatory neurons with respect to radiation, which might provide the cellular mechanism of the disinhibitory effect observed in vivo. CONCLUSION We provide initial evidence for a rather circuit-wide, long-lasting disinhibitory effect of low sub-ablative doses of SRS.
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16
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OUP accepted manuscript. Cereb Cortex 2022; 32:4782-4796. [DOI: 10.1093/cercor/bhab516] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2021] [Revised: 12/08/2021] [Accepted: 12/09/2021] [Indexed: 11/14/2022] Open
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17
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Lee SH, Broadwater MA, Ban W, Wang TWW, Kim HJ, Dumas JS, Vetreno RP, Herman MA, Morrow AL, Besheer J, Kash TL, Boettiger CA, Robinson DL, Crews FT, Shih YYI. An isotropic EPI database and analytical pipelines for rat brain resting-state fMRI. Neuroimage 2021; 243:118541. [PMID: 34478824 PMCID: PMC8561231 DOI: 10.1016/j.neuroimage.2021.118541] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2021] [Revised: 08/08/2021] [Accepted: 08/30/2021] [Indexed: 12/24/2022] Open
Abstract
Resting-state functional magnetic resonance imaging (fMRI) has drastically expanded the scope of brain research by advancing our knowledge about the topologies, dynamics, and interspecies translatability of functional brain networks. Several databases have been developed and shared in accordance with recent key initiatives in the rodent fMRI community to enhance the transparency, reproducibility, and interpretability of data acquired at various sites. Despite these pioneering efforts, one notable challenge preventing efficient standardization in the field is the customary choice of anisotropic echo planar imaging (EPI) schemes with limited spatial coverage. Imaging with anisotropic resolution and/or reduced brain coverage has significant shortcomings including reduced registration accuracy and increased deviation in brain feature detection. Here we proposed a high-spatial-resolution (0.4 mm), isotropic, whole-brain EPI protocol for the rat brain using a horizontal slicing scheme that can maintain a functionally relevant repetition time (TR), avoid high gradient duty cycles, and offer unequivocal whole-brain coverage. Using this protocol, we acquired resting-state EPI fMRI data from 87 healthy rats under the widely used dexmedetomidine sedation supplemented with low-dose isoflurane on a 9.4 T MRI system. We developed an EPI template that closely approximates the Paxinos and Watson's rat brain coordinate system and demonstrated its ability to improve the accuracy of group-level approaches and streamline fMRI data pre-processing. Using this database, we employed a multi-scale dictionary-learning approach to identify reliable spatiotemporal features representing rat brain intrinsic activity. Subsequently, we performed k-means clustering on those features to obtain spatially discrete, functional regions of interest (ROIs). Using Euclidean-based hierarchical clustering and modularity-based partitioning, we identified the topological organizations of the rat brain. Additionally, the identified group-level FC network appeared robust across strains and sexes. The "triple-network" commonly adapted in human fMRI were resembled in the rat brain. Through this work, we disseminate raw and pre-processed isotropic EPI data, a rat brain EPI template, as well as identified functional ROIs and networks in standardized rat brain coordinates. We also make our analytical pipelines and scripts publicly available, with the hope of facilitating rat brain resting-state fMRI study standardization.
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Affiliation(s)
- Sung-Ho Lee
- Center for Animal MRI, University of North Carolina, Chapel Hill, NC, USA,Biomedical Research Imaging Center, University of North Carolina, Chapel Hill, NC, USA,Department of Neurology, University of North Carolina, Chapel Hill, NC, USA,Bowles Center for Alcohol Studies University of North Carolina, Chapel Hill, NC, USA,Corresponding authors at: Center for Animal MRI, 125 Mason Farm Road, CB# 7513, University of North Carolina, Chapel Hill, NC 27599, USA. (S.-H. Lee), (Y.-Y.I. Shih)
| | - Margaret A. Broadwater
- Center for Animal MRI, University of North Carolina, Chapel Hill, NC, USA,Biomedical Research Imaging Center, University of North Carolina, Chapel Hill, NC, USA,Department of Neurology, University of North Carolina, Chapel Hill, NC, USA,Bowles Center for Alcohol Studies University of North Carolina, Chapel Hill, NC, USA
| | - Woomi Ban
- Center for Animal MRI, University of North Carolina, Chapel Hill, NC, USA,Biomedical Research Imaging Center, University of North Carolina, Chapel Hill, NC, USA
| | - Tzu-Wen Winnie Wang
- Center for Animal MRI, University of North Carolina, Chapel Hill, NC, USA,Biomedical Research Imaging Center, University of North Carolina, Chapel Hill, NC, USA
| | - Hyeon-Joong Kim
- Center for Animal MRI, University of North Carolina, Chapel Hill, NC, USA,Biomedical Research Imaging Center, University of North Carolina, Chapel Hill, NC, USA,Department of Neurology, University of North Carolina, Chapel Hill, NC, USA
| | - Jaiden Seongmi Dumas
- Center for Animal MRI, University of North Carolina, Chapel Hill, NC, USA,Department of Neurology, University of North Carolina, Chapel Hill, NC, USA,Department of Quantitative Biology, University of North Carolina, Chapel Hill, NC, USA
| | - Ryan P. Vetreno
- Bowles Center for Alcohol Studies University of North Carolina, Chapel Hill, NC, USA,Department of Pharmacology, University of North Carolina, Chapel Hill, NC, USA
| | - Melissa A. Herman
- Bowles Center for Alcohol Studies University of North Carolina, Chapel Hill, NC, USA,Department of Pharmacology, University of North Carolina, Chapel Hill, NC, USA
| | - A. Leslie Morrow
- Bowles Center for Alcohol Studies University of North Carolina, Chapel Hill, NC, USA,Department of Psychiatry, University of North Carolina, Chapel Hill, NC, USA,Department of Pharmacology, University of North Carolina, Chapel Hill, NC, USA
| | - Joyce Besheer
- Bowles Center for Alcohol Studies University of North Carolina, Chapel Hill, NC, USA,Department of Psychiatry, University of North Carolina, Chapel Hill, NC, USA
| | - Thomas L. Kash
- Bowles Center for Alcohol Studies University of North Carolina, Chapel Hill, NC, USA,Department of Pharmacology, University of North Carolina, Chapel Hill, NC, USA
| | - Charlotte A. Boettiger
- Bowles Center for Alcohol Studies University of North Carolina, Chapel Hill, NC, USA,Department of Psychiatry, University of North Carolina, Chapel Hill, NC, USA,Department of Psychology and Neuroscience, University of North Carolina, Chapel Hill, NC, USA
| | - Donita L. Robinson
- Bowles Center for Alcohol Studies University of North Carolina, Chapel Hill, NC, USA,Department of Psychiatry, University of North Carolina, Chapel Hill, NC, USA
| | - Fulton T. Crews
- Bowles Center for Alcohol Studies University of North Carolina, Chapel Hill, NC, USA,Department of Psychiatry, University of North Carolina, Chapel Hill, NC, USA,Department of Pharmacology, University of North Carolina, Chapel Hill, NC, USA
| | - Yen-Yu Ian Shih
- Center for Animal MRI, University of North Carolina, Chapel Hill, NC, USA,Biomedical Research Imaging Center, University of North Carolina, Chapel Hill, NC, USA,Department of Neurology, University of North Carolina, Chapel Hill, NC, USA,Bowles Center for Alcohol Studies University of North Carolina, Chapel Hill, NC, USA,Corresponding authors at: Center for Animal MRI, 125 Mason Farm Road, CB# 7513, University of North Carolina, Chapel Hill, NC 27599, USA. (S.-H. Lee), (Y.-Y.I. Shih)
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18
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Pradier B, Wachsmuth L, Nagelmann N, Segelcke D, Kreitz S, Hess A, Pogatzki-Zahn EM, Faber C. Combined resting state-fMRI and calcium recordings show stable brain states for task-induced fMRI in mice under combined ISO/MED anesthesia. Neuroimage 2021; 245:118626. [PMID: 34637903 DOI: 10.1016/j.neuroimage.2021.118626] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Accepted: 09/27/2021] [Indexed: 11/28/2022] Open
Abstract
For fMRI in animal models, the combination of low-dose anesthetic, isoflurane (ISO), and the sedative medetomidine (MED) has recently become an advocated regimen to achieve stable neuronal states and brain networks in rats that are required for reliable task-induced BOLD fMRI. However, in mice the temporal stability of neuronal states and networks in resting-state (rs)-fMRI experiments during the combined ISO/MED regimen has not been systematically investigated. Using a multimodal approach with optical calcium (Ca2+) recordings and rs-fMRI, we investigated cortical neuronal/astrocytic Ca2+activity states and brain networks at multiple time points while switching from anesthesia with 1% ISO to a combined ISO/MED regimen. We found that cortical activity states reached a steady-state 45 min following start of MED infusion as indicated by stable Ca2+ transients. Similarly, rs-networks were not statistically different between anesthesia with ISO and the combined ISO/MED regimen 45 and 100 min after start of MED. Importantly, during the transition time we identified changed rs-network signatures that likely reflect the different mode of action of the respective anesthetic; these included a dose-dependent increase in cortico-cortical functional connectivity (FC) presumably caused by reduction of ISO concentration and decreased FC in subcortical arousal nuclei due to MED infusion. Furthermore, we report detection of visual stimulation-induced BOLD fMRI during the stable ISO/MED neuronal state 45 min after induction. Based on our findings, we recommend a 45-minute waiting period after switching from ISO anesthesia to the combined ISO/MED regimen before performing rs- or task-induced fMRI experiments.
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Affiliation(s)
- Bruno Pradier
- Department of Clinical Radiology, Translational Research Imaging Center, University Hospital Münster, Münster 48149, Germany; Department of Anesthesiology Intensive Care and Pain Medicine, University Hospital Münster, Germany
| | - Lydia Wachsmuth
- Department of Clinical Radiology, Translational Research Imaging Center, University Hospital Münster, Münster 48149, Germany
| | - Nina Nagelmann
- Department of Clinical Radiology, Translational Research Imaging Center, University Hospital Münster, Münster 48149, Germany
| | - Daniel Segelcke
- Department of Anesthesiology Intensive Care and Pain Medicine, University Hospital Münster, Germany
| | - Silke Kreitz
- Institute of Experimental and Clinical Pharmacology and Toxicology, Emil Fischer Center, University of Erlangen-Nuremberg, Erlangen, Germany
| | - Andreas Hess
- Institute of Experimental and Clinical Pharmacology and Toxicology, Emil Fischer Center, University of Erlangen-Nuremberg, Erlangen, Germany
| | - Esther M Pogatzki-Zahn
- Department of Anesthesiology Intensive Care and Pain Medicine, University Hospital Münster, Germany
| | - Cornelius Faber
- Department of Clinical Radiology, Translational Research Imaging Center, University Hospital Münster, Münster 48149, Germany.
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19
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Mächler P, Broggini T, Mateo C, Thunemann M, Fomin-Thunemann N, Doran PR, Sencan I, Kilic K, Desjardins M, Uhlirova H, Yaseen MA, Boas DA, Linninger AA, Vergassola M, Yu X, Lewis LD, Polimeni JR, Rosen BR, Sakadžić S, Buxton RB, Lauritzen M, Kleinfeld D, Devor A. A Suite of Neurophotonic Tools to Underpin the Contribution of Internal Brain States in fMRI. CURRENT OPINION IN BIOMEDICAL ENGINEERING 2021; 18:100273. [PMID: 33959688 PMCID: PMC8095678 DOI: 10.1016/j.cobme.2021.100273] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Abstract
Recent developments in optical microscopy, applicable for large-scale and longitudinal imaging of cortical activity in behaving animals, open unprecedented opportunities to gain a deeper understanding of neurovascular and neurometabolic coupling during different brain states. Future studies will leverage these tools to deliver foundational knowledge about brain state-dependent regulation of cerebral blood flow and metabolism as well as regulation as a function of brain maturation and aging. This knowledge is of critical importance to interpret hemodynamic signals observed with functional magnetic resonance imaging (fMRI).
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Affiliation(s)
- Philipp Mächler
- Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA
- Department of Physics, University of California San Diego, La Jolla, CA 92093, USA
| | - Thomas Broggini
- Department of Physics, University of California San Diego, La Jolla, CA 92093, USA
| | - Celine Mateo
- Department of Physics, University of California San Diego, La Jolla, CA 92093, USA
| | - Martin Thunemann
- Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA
| | | | - Patrick R. Doran
- Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA
| | - Ikbal Sencan
- Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Harvard Medical School, Massachusetts General Hospital, Charlestown, MA 02129, USA
| | - Kivilcim Kilic
- Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA
| | - Michèle Desjardins
- Département de Physique, de Génie Physique et d’Optique, Université Laval, Québec, QC G1V 0A6, Canada
| | - Hana Uhlirova
- Institute of Scientific Instruments of the Czech Academy of Science, Brno, Czech Republic
| | - Mohammad A. Yaseen
- Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Harvard Medical School, Massachusetts General Hospital, Charlestown, MA 02129, USA
- Department of Bioengineering, Northeastern University, Boston, MA 02115, USA
| | - David A. Boas
- Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA
| | - Andreas A. Linninger
- Department of Bioengineering, University of Illinois at Chicago, Chicago, IL 60607, USA
| | - Massimo Vergassola
- Department of Physics, University of California San Diego, La Jolla, CA 92093, USA
- Département de Physique de l’Ecole Normale Supérieure, 75005 Paris, France
| | - Xin Yu
- Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Harvard Medical School, Massachusetts General Hospital, Charlestown, MA 02129, USA
| | - Laura D. Lewis
- Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA
| | - Jonathan R. Polimeni
- Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Harvard Medical School, Massachusetts General Hospital, Charlestown, MA 02129, USA
| | - Bruce R. Rosen
- Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Harvard Medical School, Massachusetts General Hospital, Charlestown, MA 02129, USA
| | - Sava Sakadžić
- Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Harvard Medical School, Massachusetts General Hospital, Charlestown, MA 02129, USA
| | - Richard B. Buxton
- Department of Radiology, University of California San Diego, La Jolla, CA 92037, USA
| | - Martin Lauritzen
- Department of Neuroscience and Pharmacology, University of Copenhagen, Copenhagen N 2200, Denmark
- Department of Clinical Neurophysiology, Glostrup Hospital, Glostrup 2600, Denmark
| | - David Kleinfeld
- Department of Physics, University of California San Diego, La Jolla, CA 92093, USA
- Section on Neurobiology, University of California San Diego, La Jolla, CA 92093, USA
| | - Anna Devor
- Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA
- Athinoula A. Martinos Center for Biomedical Imaging, Department of Radiology, Harvard Medical School, Massachusetts General Hospital, Charlestown, MA 02129, USA
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20
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Kuang D, Michoski C. Dual stream neural networks for brain signal classification. J Neural Eng 2021; 18. [DOI: 10.1088/1741-2552/abc903] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2020] [Accepted: 11/10/2020] [Indexed: 11/11/2022]
Abstract
Abstract
Objective. The primary objective of this work is to develop a neural nework classifier for arbitrary collections of functional neuroimaging signals to be used in brain–computer interfaces (BCIs). Approach. We propose a dual stream neural network (DSNN) for the classification problem. The first stream is an end-to-end classifier taking raw time-dependent signals as input and generating feature identification signatures from them. The second stream enhances the identified features from the first stream by adjoining a dynamic functional connectivity matrix aimed at incorporating nuanced multi-channel information during specified BCI tasks. Main results. The proposed DSNN classifier is benchmarked against three publicly available datasets, where the classifier demonstrates performance comparable to, or better than the state-of-art in each instance. An information theoretic examination of the trained network is also performed, utilizing various tools, to demonstrate how to glean interpretive insight into how the hidden layers of the network parse the underlying biological signals. Significance
. The resulting DSNN is a subject-independent classifier that works for any collection of 1D functional neuroimaging signals, with the option of integrating domain specific information in the design.
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21
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Ming Q, Liou JY, Yang F, Li J, Chu C, Zhou Q, Wu D, Xu S, Luo P, Liang J, Li D, Pryor KO, Lin W, Schwartz TH, Ma H. Isoflurane-Induced Burst Suppression Is a Thalamus-Modulated, Focal-Onset Rhythm With Persistent Local Asynchrony and Variable Propagation Patterns in Rats. Front Syst Neurosci 2021; 14:599781. [PMID: 33510621 PMCID: PMC7835516 DOI: 10.3389/fnsys.2020.599781] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Accepted: 12/14/2020] [Indexed: 11/13/2022] Open
Abstract
Background: Inhalational anesthetic-induced burst suppression (BS) is classically considered a bilaterally synchronous rhythm. However, local asynchrony has been predicted in theoretical studies and reported in patients with pre-existing focal pathology. Method: We used high-speed widefield calcium imaging to study the spatiotemporal dynamics of isoflurane-induced BS in rats. Results: We found that isoflurane-induced BS is not a globally synchronous rhythm. In the neocortex, neural activity first emerged in a spatially shifting, variably localized focus. Subsequent propagation across the whole cortex was rapid, typically within <100 milliseconds, giving the superficial resemblance to global synchrony. Neural activity remained locally asynchronous during the bursts, forming complex recurrent propagating waves. Despite propagation variability, spatial sequences of burst propagation were largely preserved between the hemispheres, and neural activity was highly correlated between the homotopic areas. The critical role of the thalamus in cortical burst initiation was demonstrated by using unilateral thalamic tetrodotoxin injection. Conclusion: The classical impression that anesthetics-induced BS is a state of global brain synchrony is inaccurate. Bursts are a series of shifting local cortical events facilitated by thalamic projection that unfold as rapid, bilaterally asynchronous propagating waves.
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Affiliation(s)
- Qianwen Ming
- Department of Neurology, The First Hospital of Jilin University, Changchun, China
| | - Jyun-You Liou
- Department of Anesthesiology, New York-Presbyterian Hospital/Weill Cornell Medicine, New York, NY, United States
| | - Fan Yang
- Department of Neurology, The First Hospital of Jilin University, Changchun, China
| | - Jing Li
- Department of Neurology, The First Hospital of Jilin University, Changchun, China
| | - Chaojia Chu
- Department of Neurology, The First Hospital of Jilin University, Changchun, China
| | - Qingchen Zhou
- Department of Radiology, The First Hospital of Jilin University, Changchun, China
| | - Dan Wu
- Department of Radiology, The First Hospital of Jilin University, Changchun, China
| | - Shujia Xu
- Department of Radiology, The First Hospital of Jilin University, Changchun, China
| | - Peijuan Luo
- Department of Neurology, The First Hospital of Jilin University, Changchun, China
| | - Jianmin Liang
- Department of Pediatrics, The First Hospital of Jilin University, Changchun, China
| | - Dan Li
- Department of Radiology, The First Hospital of Jilin University, Changchun, China
| | - Kane O Pryor
- Department of Anesthesiology, New York-Presbyterian Hospital/Weill Cornell Medicine, New York, NY, United States
| | - Weihong Lin
- Department of Neurology, The First Hospital of Jilin University, Changchun, China
| | - Theodore H Schwartz
- Department of Neurological Surgery and Brain and Mind Research Institute, Weill Cornell Medicine of Cornell University, NewYork-Presbyterian Hospital, New York, NY, United States
| | - Hongtao Ma
- Department of Neurology, The First Hospital of Jilin University, Changchun, China.,Department of Neurological Surgery and Brain and Mind Research Institute, Weill Cornell Medicine of Cornell University, NewYork-Presbyterian Hospital, New York, NY, United States
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22
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Aedo-Jury F, Schwalm M, Hamzehpour L, Stroh A. Brain states govern the spatio-temporal dynamics of resting-state functional connectivity. eLife 2020; 9:53186. [PMID: 32568067 PMCID: PMC7329332 DOI: 10.7554/elife.53186] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Accepted: 06/18/2020] [Indexed: 01/08/2023] Open
Abstract
Previously, using simultaneous resting-state functional magnetic resonance imaging (fMRI) and photometry-based neuronal calcium recordings in the anesthetized rat, we identified blood oxygenation level-dependent (BOLD) responses directly related to slow calcium waves, revealing a cortex-wide and spatially organized correlate of locally recorded neuronal activity (Schwalm et al., 2017). Here, using the same techniques, we investigate two distinct cortical activity states: persistent activity, in which compartmentalized network dynamics were observed; and slow wave activity, dominated by a cortex-wide BOLD component, suggesting a strong functional coupling of inter-cortical activity. During slow wave activity, we find a correlation between the occurring slow wave events and the strength of functional connectivity between different cortical areas. These findings suggest that down-up transitions of neuronal excitability can drive cortex-wide functional connectivity. This study provides further evidence that changes in functional connectivity are dependent on the brain's current state, directly linked to the generation of slow waves.
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Affiliation(s)
- Felipe Aedo-Jury
- Institute of Pathophysiology, University Medical Center Mainz, Mainz, Germany.,Leibniz Institute for Resilience Research, Mainz, Germany
| | - Miriam Schwalm
- Institute of Pathophysiology, University Medical Center Mainz, Mainz, Germany.,Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, United States
| | - Lara Hamzehpour
- Institute of Pathophysiology, University Medical Center Mainz, Mainz, Germany
| | - Albrecht Stroh
- Institute of Pathophysiology, University Medical Center Mainz, Mainz, Germany.,Leibniz Institute for Resilience Research, Mainz, Germany
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