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Ghazinouri B, Nejad MM, Cheng S. Navigation and the efficiency of spatial coding: insights from closed-loop simulations. Brain Struct Funct 2024; 229:577-592. [PMID: 37029811 PMCID: PMC10978723 DOI: 10.1007/s00429-023-02637-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Accepted: 03/28/2023] [Indexed: 04/09/2023]
Abstract
Spatial learning is critical for survival and its underlying neuronal mechanisms have been studied extensively. These studies have revealed a wealth of information about the neural representations of space, such as place cells and boundary cells. While many studies have focused on how these representations emerge in the brain, their functional role in driving spatial learning and navigation has received much less attention. We extended an existing computational modeling tool-chain to study the functional role of spatial representations using closed-loop simulations of spatial learning. At the heart of the model agent was a spiking neural network that formed a ring attractor. This network received inputs from place and boundary cells and the location of the activity bump in this network was the output. This output determined the movement directions of the agent. We found that the navigation performance depended on the parameters of the place cell input, such as their number, the place field sizes, and peak firing rate, as well as, unsurprisingly, the size of the goal zone. The dependence on the place cell parameters could be accounted for by just a single variable, the overlap index, but this dependence was nonmonotonic. By contrast, performance scaled monotonically with the Fisher information of the place cell population. Our results therefore demonstrate that efficiently encoding spatial information is critical for navigation performance.
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Affiliation(s)
- Behnam Ghazinouri
- Faculty of Computer Science, Institute for Neural Computation, Ruhr University Bochum, Universitätsstrasse 150, 44801, Bochum, Germany
| | - Mohammadreza Mohagheghi Nejad
- Faculty of Computer Science, Institute for Neural Computation, Ruhr University Bochum, Universitätsstrasse 150, 44801, Bochum, Germany
| | - Sen Cheng
- Faculty of Computer Science, Institute for Neural Computation, Ruhr University Bochum, Universitätsstrasse 150, 44801, Bochum, Germany.
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Parra-Barrero E, Vijayabaskaran S, Seabrook E, Wiskott L, Cheng S. A map of spatial navigation for neuroscience. Neurosci Biobehav Rev 2023; 152:105200. [PMID: 37178943 DOI: 10.1016/j.neubiorev.2023.105200] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Revised: 04/13/2023] [Accepted: 04/24/2023] [Indexed: 05/15/2023]
Abstract
Spatial navigation has received much attention from neuroscientists, leading to the identification of key brain areas and the discovery of numerous spatially selective cells. Despite this progress, our understanding of how the pieces fit together to drive behavior is generally lacking. We argue that this is partly caused by insufficient communication between behavioral and neuroscientific researchers. This has led the latter to under-appreciate the relevance and complexity of spatial behavior, and to focus too narrowly on characterizing neural representations of space-disconnected from the computations these representations are meant to enable. We therefore propose a taxonomy of navigation processes in mammals that can serve as a common framework for structuring and facilitating interdisciplinary research in the field. Using the taxonomy as a guide, we review behavioral and neural studies of spatial navigation. In doing so, we validate the taxonomy and showcase its usefulness in identifying potential issues with common experimental approaches, designing experiments that adequately target particular behaviors, correctly interpreting neural activity, and pointing to new avenues of research.
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Affiliation(s)
- Eloy Parra-Barrero
- Institute for Neural Computation, Faculty of Computer Science, Ruhr University Bochum, Bochum, Germany; International Graduate School of Neuroscience, Ruhr University Bochum, Bochum, Germany
| | - Sandhiya Vijayabaskaran
- Institute for Neural Computation, Faculty of Computer Science, Ruhr University Bochum, Bochum, Germany
| | - Eddie Seabrook
- Institute for Neural Computation, Faculty of Computer Science, Ruhr University Bochum, Bochum, Germany
| | - Laurenz Wiskott
- Institute for Neural Computation, Faculty of Computer Science, Ruhr University Bochum, Bochum, Germany; International Graduate School of Neuroscience, Ruhr University Bochum, Bochum, Germany
| | - Sen Cheng
- Institute for Neural Computation, Faculty of Computer Science, Ruhr University Bochum, Bochum, Germany; International Graduate School of Neuroscience, Ruhr University Bochum, Bochum, Germany.
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Parra-Barrero E, Cheng S. Learning to predict future locations with internally generated theta sequences. PLoS Comput Biol 2023; 19:e1011101. [PMID: 37172053 DOI: 10.1371/journal.pcbi.1011101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Revised: 05/24/2023] [Accepted: 04/13/2023] [Indexed: 05/14/2023] Open
Abstract
Representing past, present and future locations is key for spatial navigation. Indeed, within each cycle of the theta oscillation, the population of hippocampal place cells appears to represent trajectories starting behind the current position of the animal and sweeping ahead of it. In particular, we reported recently that the position represented by CA1 place cells at a given theta phase corresponds to the location where animals were or will be located at a fixed time interval into the past or future assuming the animal ran at its typical, not the current, speed through that part of the environment. This coding scheme leads to longer theta trajectories, larger place fields and shallower phase precession in areas where animals typically run faster. Here we present a mechanistic computational model that accounts for these experimental observations. The model consists of a continuous attractor network with short-term synaptic facilitation and depression that internally generates theta sequences that advance at a fixed pace. Spatial locations are then mapped onto the active units via modified Hebbian plasticity. As a result, neighboring units become associated with spatial locations further apart where animals run faster, reproducing our earlier experimental results. The model also accounts for the higher density of place fields generally observed where animals slow down, such as around rewards. Furthermore, our modeling results reveal that an artifact of the decoding analysis might be partly responsible for the observation that theta trajectories start behind the animal's current position. Overall, our results shed light on how the hippocampal code might arise from the interplay between behavior, sensory input and predefined network dynamics.
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Affiliation(s)
- Eloy Parra-Barrero
- Institute for Neural Computation, Faculty of Computer Science, Ruhr University Bochum, Bochum, Germany
- International Graduate School of Neuroscience, Ruhr University Bochum, Bochum, Germany
| | - Sen Cheng
- Institute for Neural Computation, Faculty of Computer Science, Ruhr University Bochum, Bochum, Germany
- International Graduate School of Neuroscience, Ruhr University Bochum, Bochum, Germany
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Guardamagna M, Stella F, Battaglia FP. Heterogeneity of network and coding states in mouse CA1 place cells. Cell Rep 2023; 42:112022. [PMID: 36709427 DOI: 10.1016/j.celrep.2023.112022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Revised: 10/20/2022] [Accepted: 01/06/2023] [Indexed: 01/29/2023] Open
Abstract
Theta sequences and phase precession shape hippocampal activity and are considered key underpinnings of memory formation. Theta sequences are sweeps of spikes from multiple cells, tracing trajectories from past to future. Phase precession is the correlation between theta firing phase and animal position. Here, we reconsider these temporal processes in CA1 and the computational principles that they are thought to obey. We find stronger heterogeneity than previously described: we identify cells that do not phase precess but reliably express theta sequences. Other cells phase precess only when medium gamma (linked to entorhinal inputs) is strongest. The same cells express more sequences, but not precession, when slow gamma (linked to CA3 inputs) dominates. Moreover, sequences occur independently in distinct cell groups. Our results challenge the view that phase precession is the mechanism underlying the emergence of theta sequences, suggesting a role for CA1 cells in multiplexing diverse computational processes.
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Affiliation(s)
- Matteo Guardamagna
- Kavli Institute for Systems Neuroscience and Centre for Neural Computation, Norwegian University of Science and Technology, Trondheim, Norway
| | - Federico Stella
- Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen, the Netherlands
| | - Francesco P Battaglia
- Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen, the Netherlands.
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Green L, Tingley D, Rinzel J, Buzsáki G. Action-driven remapping of hippocampal neuronal populations in jumping rats. Proc Natl Acad Sci U S A 2022; 119:e2122141119. [PMID: 35737843 PMCID: PMC9245695 DOI: 10.1073/pnas.2122141119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Accepted: 05/03/2022] [Indexed: 12/24/2022] Open
Abstract
The current dominant view of the hippocampus is that it is a navigation "device" guided by environmental inputs. Yet, a critical aspect of navigation is a sequence of planned, coordinated actions. We examined the role of action in the neuronal organization of the hippocampus by training rats to jump a gap on a linear track. Recording local field potentials and ensembles of single units in the hippocampus, we found that jumping produced a stereotypic behavior associated with consistent electrophysiological patterns, including phase reset of theta oscillations, predictable global firing-rate changes, and population vector shifts of hippocampal neurons. A subset of neurons ("jump cells") were systematically affected by the gap but only in one direction of travel. Novel place fields emerged and others were either boosted or attenuated by jumping, yet the theta spike phase versus animal position relationship remained unaltered. Thus, jumping involves an action plan for the animal to traverse the same route as without jumping, which is faithfully tracked by hippocampal neuronal activity.
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Affiliation(s)
- Laura Green
- Neuroscience Institute, Langone Medical Center, New York University, New York, NY 10016
- Center for Neural Science, New York University, New York, NY 10003
| | - David Tingley
- Neuroscience Institute, Langone Medical Center, New York University, New York, NY 10016
| | - John Rinzel
- Center for Neural Science, New York University, New York, NY 10003
- Courant Institute for Mathematical Sciences, New York University, New York, NY 10012
| | - György Buzsáki
- Neuroscience Institute, Langone Medical Center, New York University, New York, NY 10016
- Center for Neural Science, New York University, New York, NY 10003
- Department of Neurology, Langone Medical Center, New York University, New York, NY 10016
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