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For: Winker K, Glenn TC, Faircloth BC. Ultraconserved elements (UCEs) illuminate the population genomics of a recent, high-latitude avian speciation event. PeerJ 2018;6:e5735. [PMID: 30310754 PMCID: PMC6174879 DOI: 10.7717/peerj.5735] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2018] [Accepted: 09/05/2018] [Indexed: 01/08/2023]  Open
Number Cited by Other Article(s)
1
Naughton I, Tsutsui ND, Ward PS, Holway DA. An assemblage-level comparison of genetic diversity and population genetic structure between island and mainland ant populations. Evolution 2024;78:1685-1698. [PMID: 38981009 DOI: 10.1093/evolut/qpae103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Revised: 06/05/2024] [Accepted: 07/07/2024] [Indexed: 07/11/2024]
2
Ge X, Peng L, Morse JC, Wang J, Zang H, Yang L, Sun C, Wang B. Phylogenomics resolves a 100-year-old debate regarding the evolutionary history of caddisflies (Insecta: Trichoptera). Mol Phylogenet Evol 2024;201:108196. [PMID: 39278385 DOI: 10.1016/j.ympev.2024.108196] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2024] [Revised: 06/11/2024] [Accepted: 09/07/2024] [Indexed: 09/18/2024]
3
Winker K, Withrow JJ, Gibson DD, Pruett CL. Beringia as a high-latitude engine of avian speciation. Biol Rev Camb Philos Soc 2023;98:1081-1099. [PMID: 36879465 DOI: 10.1111/brv.12945] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2022] [Revised: 02/21/2023] [Accepted: 02/23/2023] [Indexed: 03/08/2023]
4
Spaulding F, McLaughlin JF, Cheek RG, McCracken KG, Glenn TC, Winker K. Population genomics indicate three different modes of divergence and speciation with gene flow in the green-winged teal duck complex. Mol Phylogenet Evol 2023;182:107733. [PMID: 36801373 PMCID: PMC10092703 DOI: 10.1016/j.ympev.2023.107733] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Revised: 01/31/2023] [Accepted: 02/09/2023] [Indexed: 02/18/2023]
5
Conservation genomics reveals low connectivity among populations of threatened roseate terns (Sterna dougallii) in the Atlantic Basin. CONSERV GENET 2023. [DOI: 10.1007/s10592-023-01505-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2023]
6
Petersen HC, Hansen BW, Knott KE, Banta GT. Species and genetic diversity relationships in benthic macroinvertebrate communities along a salinity gradient. BMC Ecol Evol 2022;22:125. [PMID: 36324063 PMCID: PMC9632067 DOI: 10.1186/s12862-022-02087-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2021] [Accepted: 10/26/2022] [Indexed: 11/06/2022]  Open
7
Liu D, Niu M, Lu Y, Wei J, Zhang H. Taxon-specific ultraconserved element probe design for phylogenetic analyses of scale insects (Hemiptera: Sternorrhyncha: Coccoidea). Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.984396] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
8
Snetkova V, Pennacchio LA, Visel A, Dickel DE. Perfect and imperfect views of ultraconserved sequences. Nat Rev Genet 2022;23:182-194. [PMID: 34764456 PMCID: PMC8858888 DOI: 10.1038/s41576-021-00424-x] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/30/2021] [Indexed: 12/12/2022]
9
Silva SM, Ribas CC, Aleixo A. Recent population differentiation in the habitat specialist Glossy Antshrike (Aves: Thamnophilidae) across Amazonian seasonally flooded forests. Ecol Evol 2021;11:11826-11838. [PMID: 34522344 PMCID: PMC8427616 DOI: 10.1002/ece3.7951] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2021] [Revised: 07/11/2021] [Accepted: 07/13/2021] [Indexed: 11/30/2022]  Open
10
Gene flow in phylogenomics: Sequence capture resolves species limits and biogeography of Afromontane forest endemic frogs from the Cameroon Highlands. Mol Phylogenet Evol 2021;163:107258. [PMID: 34252546 DOI: 10.1016/j.ympev.2021.107258] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Revised: 06/28/2021] [Accepted: 07/07/2021] [Indexed: 11/21/2022]
11
Considerations for Initiating a Wildlife Genomics Research Project in South and South-East Asia. J Indian Inst Sci 2021. [DOI: 10.1007/s41745-021-00243-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
12
Andersen MJ, McCullough JM, Gyllenhaal EF, Mapel XM, Haryoko T, Jønsson KA, Joseph L. Complex histories of gene flow and a mitochondrial capture event in a nonsister pair of birds. Mol Ecol 2021;30:2087-2103. [PMID: 33615597 PMCID: PMC8252742 DOI: 10.1111/mec.15856] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2019] [Revised: 02/02/2021] [Accepted: 02/12/2021] [Indexed: 01/03/2023]
13
Gueuning M, Frey JE, Praz C. Ultraconserved yet informative for species delimitation: Ultraconserved elements resolve long-standing systematic enigma in Central European bees. Mol Ecol 2020;29:4203-4220. [PMID: 32916006 DOI: 10.1111/mec.15629] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2020] [Revised: 08/21/2020] [Accepted: 08/24/2020] [Indexed: 12/21/2022]
14
Parker LD, Hawkins MTR, Camacho-Sanchez M, Campana MG, West-Roberts JA, Wilbert TR, Lim HC, Rockwood LL, Leonard JA, Maldonado JE. Little genetic structure in a Bornean endemic small mammal across a steep ecological gradient. Mol Ecol 2020;29:4074-4090. [PMID: 32911576 DOI: 10.1111/mec.15626] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Revised: 08/14/2020] [Accepted: 08/20/2020] [Indexed: 01/02/2023]
15
Erickson KL, Pentico A, Quattrini AM, McFadden CS. New approaches to species delimitation and population structure of anthozoans: Two case studies of octocorals using ultraconserved elements and exons. Mol Ecol Resour 2020;21:78-92. [PMID: 32786110 DOI: 10.1111/1755-0998.13241] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2020] [Accepted: 08/04/2020] [Indexed: 01/06/2023]
16
McLaughlin JF, Faircloth BC, Glenn TC, Winker K. Divergence, gene flow, and speciation in eight lineages of trans-Beringian birds. Mol Ecol 2020;29:3526-3542. [PMID: 32745340 DOI: 10.1111/mec.15574] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2019] [Revised: 07/22/2020] [Accepted: 07/27/2020] [Indexed: 12/13/2022]
17
Van Dam MH, Henderson JB, Esposito L, Trautwein M. Genomic Characterization and Curation of UCEs Improves Species Tree Reconstruction. Syst Biol 2020;70:307-321. [PMID: 32750133 PMCID: PMC7875437 DOI: 10.1093/sysbio/syaa063] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2019] [Revised: 07/26/2020] [Accepted: 07/29/2020] [Indexed: 12/12/2022]  Open
18
Lim HC, Shakya SB, Harvey MG, Moyle RG, Fleischer RC, Braun MJ, Sheldon FH. Opening the door to greater phylogeographic inference in Southeast Asia: Comparative genomic study of five codistributed rainforest bird species using target capture and historical DNA. Ecol Evol 2020;10:3222-3247. [PMID: 32273983 PMCID: PMC7141000 DOI: 10.1002/ece3.5964] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2019] [Revised: 12/02/2019] [Accepted: 12/06/2019] [Indexed: 12/30/2022]  Open
19
Sun X, Ding Y, Orr MC, Zhang F. Streamlining universal single-copy orthologue and ultraconserved element design: A case study in Collembola. Mol Ecol Resour 2020;20. [PMID: 32065730 DOI: 10.1111/1755-0998.13146] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Revised: 01/18/2020] [Accepted: 02/10/2020] [Indexed: 11/27/2022]
20
Guillory WX, French CM, Twomey EM, Chávez G, Prates I, von May R, De la Riva I, Lötters S, Reichle S, Serrano-Rojas SJ, Whitworth A, Brown JL. Phylogenetic relationships and systematics of the Amazonian poison frog genus Ameerega using ultraconserved genomic elements. Mol Phylogenet Evol 2019;142:106638. [PMID: 31586688 DOI: 10.1016/j.ympev.2019.106638] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2019] [Revised: 10/02/2019] [Accepted: 10/02/2019] [Indexed: 12/13/2022]
21
Phylogenomic Reconstruction of the Neotropical Poison Frogs (Dendrobatidae) and Their Conservation. DIVERSITY-BASEL 2019. [DOI: 10.3390/d11080126] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
22
Speciation, gene flow, and seasonal migration in Catharus thrushes (Aves:Turdidae). Mol Phylogenet Evol 2019;139:106564. [PMID: 31330265 DOI: 10.1016/j.ympev.2019.106564] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2019] [Revised: 07/16/2019] [Accepted: 07/16/2019] [Indexed: 10/26/2022]
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