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Tang CL, Heide AG, Heide AD, Douberly GE, Turney JM, Schaefer HF. Exploring the Tl 2 H 2 potential energy surface: A comparative analysis with group 13 systems and experiment. J Comput Chem 2024; 45:985-994. [PMID: 38197269 DOI: 10.1002/jcc.27293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2023] [Revised: 12/04/2023] [Accepted: 12/10/2023] [Indexed: 01/11/2024]
Abstract
Thallium chemistry is experiencing unprecedented importance. Therefore, it is valuable to characterize some of the simplest thallium compounds. Stationary points along the singlet and triplet Tl 2 H 2 potential energy surface have been characterized. Stationary point geometries were optimized with the CCSD(T)/aug-cc-pwCVQZ-PP method. Harmonic vibrational frequencies were computed at the same level of theory while anharmonic vibrational frequencies were computed at the CCSD(T)/aug-cc-pwCVTZ-PP level of theory. Final energetics were obtained with the CCSDT(Q) method. Basis sets up to augmented quintuple-zeta cardinality (aug-cc-pwCV5Z-PP) were employed to obtain energetics in order to extrapolate to the complete basis set limits using the focal point approach. Zero-point vibrational energy corrections were appended to the extrapolated energies in order to determine relative energies at 0 K. It was found that the planar dibridged isomer lies lowest in energy while the linear structure lies highest in energy. The results were compared to other group 13 M 2 H 2 (M = B, Al, Ga, In, and Tl) theoretical studies and some interesting variations are found. With respect to experiment, incompatibilities exist.
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Affiliation(s)
- Carson L Tang
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia, USA
| | - Alexander G Heide
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia, USA
| | - Alexandra D Heide
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia, USA
| | - Gary E Douberly
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia, USA
| | - Justin M Turney
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia, USA
| | - Henry F Schaefer
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia, USA
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Smith DGA, Lolinco AT, Glick ZL, Lee J, Alenaizan A, Barnes TA, Borca CH, Di Remigio R, Dotson DL, Ehlert S, Heide AG, Herbst MF, Hermann J, Hicks CB, Horton JT, Hurtado AG, Kraus P, Kruse H, Lee SJR, Misiewicz JP, Naden LN, Ramezanghorbani F, Scheurer M, Schriber JB, Simmonett AC, Steinmetzer J, Wagner JR, Ward L, Welborn M, Altarawy D, Anwar J, Chodera JD, Dreuw A, Kulik HJ, Liu F, Martínez TJ, Matthews DA, Schaefer HF, Šponer J, Turney JM, Wang LP, De Silva N, King RA, Stanton JF, Gordon MS, Windus TL, Sherrill CD, Burns LA. Quantum Chemistry Common Driver and Databases (QCDB) and Quantum Chemistry Engine (QCEngine): Automation and interoperability among computational chemistry programs. J Chem Phys 2021; 155:204801. [PMID: 34852489 DOI: 10.1063/5.0059356] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
Community efforts in the computational molecular sciences (CMS) are evolving toward modular, open, and interoperable interfaces that work with existing community codes to provide more functionality and composability than could be achieved with a single program. The Quantum Chemistry Common Driver and Databases (QCDB) project provides such capability through an application programming interface (API) that facilitates interoperability across multiple quantum chemistry software packages. In tandem with the Molecular Sciences Software Institute and their Quantum Chemistry Archive ecosystem, the unique functionalities of several CMS programs are integrated, including CFOUR, GAMESS, NWChem, OpenMM, Psi4, Qcore, TeraChem, and Turbomole, to provide common computational functions, i.e., energy, gradient, and Hessian computations as well as molecular properties such as atomic charges and vibrational frequency analysis. Both standard users and power users benefit from adopting these APIs as they lower the language barrier of input styles and enable a standard layout of variables and data. These designs allow end-to-end interoperable programming of complex computations and provide best practices options by default.
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Affiliation(s)
- Daniel G A Smith
- Molecular Sciences Software Institute, Blacksburg, Virginia 24060, USA
| | | | - Zachary L Glick
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry, and School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
| | - Jiyoung Lee
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, USA
| | - Asem Alenaizan
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry, and School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
| | - Taylor A Barnes
- Molecular Sciences Software Institute, Blacksburg, Virginia 24060, USA
| | - Carlos H Borca
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry, and School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
| | - Roberto Di Remigio
- Department of Chemistry, Centre for Theoretical and Computational Chemistry, UiT, The Arctic University of Norway, N-9037 Tromsø, Norway
| | - David L Dotson
- Open Force Field Initiative, University of Colorado Boulder, Boulder, Colorado 80309, USA
| | - Sebastian Ehlert
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie, Universität Bonn, Beringstraße 4, D-53115 Bonn, Germany
| | - Alexander G Heide
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Michael F Herbst
- Applied and Computational Mathematics, RWTH Aachen University, Schinkelstr. 2, 52062 Aachen, Germany
| | - Jan Hermann
- FU Berlin, Department of Mathematics and Computer Science, 14195 Berlin, Germany
| | - Colton B Hicks
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
| | - Joshua T Horton
- Department of Chemistry, Lancaster University, Lancaster LA1 4YW, United Kingdom
| | - Adrian G Hurtado
- Institute for Advanced Computational Science, Stony Brook University, Stony Brook, New York 11794-5250, USA
| | - Peter Kraus
- School of Molecular and Life Sciences, Curtin University, GPO Box U1987, Perth 6845, WA, Australia
| | - Holger Kruse
- Institute of Biophysics of the Czech Academy of Sciences, Královopolská 135, 612 65 Brno, Czech Republic
| | | | - Jonathon P Misiewicz
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Levi N Naden
- Molecular Sciences Software Institute, Blacksburg, Virginia 24060, USA
| | | | - Maximilian Scheurer
- Interdisciplinary Center for Scientific Computing, Heidelberg University, Im Neuenheimer Feld 205, 69120 Heidelberg, Germany
| | - Jeffrey B Schriber
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry, and School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
| | - Andrew C Simmonett
- Laboratory of Computational Biology, National Institutes of Health-National Heart, Lung and Blood Institute, Bethesda, Maryland 20892, USA
| | - Johannes Steinmetzer
- Institute of Physical Chemistry, Friedrich Schiller University Jena, Jena, Germany
| | - Jeffrey R Wagner
- Open Force Field Initiative, University of Colorado Boulder, Boulder, Colorado 80309, USA
| | - Logan Ward
- Data Science and Learning Division, Argonne National Laboratory, Lemont, Illinois 60439, USA
| | - Matthew Welborn
- Molecular Sciences Software Institute, Blacksburg, Virginia 24060, USA
| | - Doaa Altarawy
- Molecular Sciences Software Institute, Blacksburg, Virginia 24060, USA
| | - Jamshed Anwar
- Department of Chemistry, Lancaster University, Lancaster LA1 4YW, United Kingdom
| | - John D Chodera
- Computational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA
| | - Andreas Dreuw
- Interdisciplinary Center for Scientific Computing, Heidelberg University, Im Neuenheimer Feld 205, 69120 Heidelberg, Germany
| | - Heather J Kulik
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - Fang Liu
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - Todd J Martínez
- Department of Chemistry, Stanford University, Stanford, California 94305, USA
| | - Devin A Matthews
- The Institute for Computational Engineering and Sciences, The University of Texas at Austin, Austin, Texas 78712, USA
| | - Henry F Schaefer
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Jiří Šponer
- Institute of Biophysics of the Czech Academy of Sciences, Královopolská 135, 612 65 Brno, Czech Republic
| | - Justin M Turney
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, USA
| | - Lee-Ping Wang
- Department of Chemistry, University of California Davis, Davis, California 95616, USA
| | - Nuwan De Silva
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, USA
| | - Rollin A King
- Department of Chemistry, Bethel University, St. Paul, Minnesota 55112, USA
| | - John F Stanton
- Quantum Theory Project, The University of Florida, 2328 New Physics Building, Gainesville, Florida 32611-8435, USA
| | - Mark S Gordon
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011, USA
| | - Theresa L Windus
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames, Iowa 50011, USA
| | - C David Sherrill
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry, and School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
| | - Lori A Burns
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry, and School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
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Smith DGA, Burns LA, Sirianni DA, Nascimento DR, Kumar A, James AM, Schriber JB, Zhang T, Zhang B, Abbott AS, Berquist EJ, Lechner MH, Cunha LA, Heide AG, Waldrop JM, Takeshita TY, Alenaizan A, Neuhauser D, King RA, Simmonett AC, Turney JM, Schaefer HF, Evangelista FA, DePrince AE, Crawford TD, Patkowski K, Sherrill CD. Psi4NumPy: An Interactive Quantum Chemistry Programming Environment for Reference Implementations and Rapid Development. J Chem Theory Comput 2018; 14:3504-3511. [DOI: 10.1021/acs.jctc.8b00286] [Citation(s) in RCA: 73] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Daniel G. A. Smith
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry, School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, United States
| | - Lori A. Burns
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry, School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, United States
| | - Dominic A. Sirianni
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry, School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, United States
| | - Daniel R. Nascimento
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306-4390, United States
| | - Ashutosh Kumar
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Andrew M. James
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Jeffrey B. Schriber
- Department of Chemistry, Emory University, Atlanta, Georgia 30322, United States
| | - Tianyuan Zhang
- Department of Chemistry, Emory University, Atlanta, Georgia 30322, United States
| | - Boyi Zhang
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, United States
| | - Adam S. Abbott
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, United States
| | - Eric J. Berquist
- University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States
| | - Marvin H. Lechner
- Department of Chemistry, Technical University of Munich, 80333 Munich, Germany
| | - Leonardo A. Cunha
- The Technical Institute of Aeronautics, São José dos Campos, 12228-900, Brazil
| | - Alexander G. Heide
- Department of Chemistry, Bethel University, St. Paul, Minnesota 55112, United States
| | - Jonathan M. Waldrop
- Department of Chemistry and Biochemistry, Auburn University, Auburn, Alabama 36849, United States
| | - Tyler Y. Takeshita
- Department of Chemistry, University of California Berkeley, Berkeley, California 94720, United States
| | - Asem Alenaizan
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry, School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, United States
| | - Daniel Neuhauser
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Rollin A. King
- Department of Chemistry, Bethel University, St. Paul, Minnesota 55112, United States
| | - Andrew C. Simmonett
- National Institutes of Health - National Heart, Lung and Blood Institute, Laboratory of Computational Biology, 5635 Fishers Lane, T-900 Suite, Rockville, Maryland 20852, United States
| | - Justin M. Turney
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, United States
| | - Henry F. Schaefer
- Center for Computational Quantum Chemistry, University of Georgia, Athens, Georgia 30602, United States
| | | | - A. Eugene DePrince
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306-4390, United States
| | - T. Daniel Crawford
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Konrad Patkowski
- Department of Chemistry and Biochemistry, Auburn University, Auburn, Alabama 36849, United States
| | - C. David Sherrill
- Center for Computational Molecular Science and Technology, School of Chemistry and Biochemistry, School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, United States
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