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Kayalar Ö, Arı A, Babuççu G, Konyalılar N, Doğan Ö, Can F, Şahin ÜA, Gaga EO, Levent Kuzu S, Arı PE, Odabaşı M, Taşdemir Y, Sıddık Cindoruk S, Esen F, Sakın E, Çalışkan B, Tecer LH, Fıçıcı M, Altın A, Onat B, Ayvaz C, Uzun B, Saral A, Döğeroğlu T, Malkoç S, Üzmez ÖÖ, Kunt F, Aydın S, Kara M, Yaman B, Doğan G, Olgun B, Dokumacı EN, Güllü G, Uzunpınar ES, Bayram H. Existence of SARS-CoV-2 RNA on ambient particulate matter samples: A nationwide study in Turkey. Sci Total Environ 2021; 789:147976. [PMID: 34058581 PMCID: PMC8144095 DOI: 10.1016/j.scitotenv.2021.147976] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2021] [Revised: 05/12/2021] [Accepted: 05/19/2021] [Indexed: 05/04/2023]
Abstract
Coronavirus disease 2019 (COVID-19) is caused by the SARS-CoV-2 virus and has been affecting the world since the end of 2019. The disease led to significant mortality and morbidity in Turkey, since the first case was reported on March 11th, 2020. Studies suggest a positive association between air pollution and SARS-CoV-2 infection. The aim of the present study was to investigate the role of ambient particulate matters (PM), as potential carriers for SARS-CoV-2. Ambient PM samples in various size ranges were collected from 13 sites including urban and urban-background locations and hospital gardens in 10 cities across Turkey between 13th of May and 14th of June 2020 to investigate the possible presence of SARS-CoV-2 RNA on ambient PM. A total of 203 daily samples (TSP, n = 80; PM2.5, n = 33; PM2.5-10, n = 23; PM10μm, n = 19; and 6 size segregated PM, n = 48) were collected using various samplers. The N1 gene and RdRP gene expressions were analyzed for the presence of SARS-CoV-2, as suggested by the Centers for Disease Control and Prevention (CDC). According to real time (RT)-PCR and three-dimensional (3D) digital (d) PCR analysis, dual RdRP and N1 gene positivity were detected in 20 (9.8%) samples. Ambient PM-bound SARS-CoV-2 was analyzed quantitatively and the air concentrations of the virus ranged from 0.1 copies/m3 to 23 copies/m3. The highest percentages of virus detection on PM samples were from hospital gardens in Tekirdağ, Zonguldak, and Istanbul, especially in PM2.5 mode. Findings of this study have suggested that SARS-CoV-2 may be transported by ambient particles, especially at sites close to the infection hot-spots. However, whether this has an impact on the spread of the virus infection remains to be determined.
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Affiliation(s)
- Özgecan Kayalar
- Koç University Research Center for Translational Medicine (KUTTAM), Istanbul, Turkey
| | - Akif Arı
- Department of Environmental Engineering, Faculty of Engineering, Bolu Abant Izzet Baysal University, Gölköy Campus, Bolu, Turkey
| | - Gizem Babuççu
- Koc University Research Center for Infectious Diseases, Department of Medical Microbiology, Koç University School of Medicine, Istanbul, Turkey
| | - Nur Konyalılar
- Koç University Research Center for Translational Medicine (KUTTAM), Istanbul, Turkey
| | - Özlem Doğan
- Koc University Research Center for Infectious Diseases, Department of Medical Microbiology, Koç University School of Medicine, Istanbul, Turkey
| | - Füsun Can
- Koc University Research Center for Infectious Diseases, Department of Medical Microbiology, Koç University School of Medicine, Istanbul, Turkey
| | - Ülkü A Şahin
- Department of Environmental Engineering, Engineering Faculty, Istanbul University-Cerrahpaşa, Avcılar, Istanbul, Turkey
| | - Eftade O Gaga
- Department of Environmental Engineering, Faculty of Engineering, Eskişehir Technical University, Eskişehir, Turkey
| | - S Levent Kuzu
- Department of Environmental Engineering, Civil Engineering Faculty, Yildiz Technical University, Esenler, Istanbul, Turkey
| | - Pelin Ertürk Arı
- Department of Environmental Engineering, Faculty of Engineering, Bolu Abant Izzet Baysal University, Gölköy Campus, Bolu, Turkey
| | - Mustafa Odabaşı
- Department of Environmental Engineering, Dokuz Eylül University, Izmir, Turkey
| | - Yücel Taşdemir
- Department of Environmental Engineering, Faculty of Engineering, Bursa Uludağ University, Bursa, Turkey
| | - S Sıddık Cindoruk
- Department of Environmental Engineering, Faculty of Engineering, Bursa Uludağ University, Bursa, Turkey
| | - Fatma Esen
- Department of Environmental Engineering, Faculty of Engineering, Bursa Uludağ University, Bursa, Turkey
| | - Egemen Sakın
- Department of Environmental Engineering, Faculty of Engineering, Bursa Uludağ University, Bursa, Turkey
| | - Burak Çalışkan
- Department of Environmental Engineering, Faculty of Engineering, Bursa Uludağ University, Bursa, Turkey
| | - Lokman H Tecer
- Department of Environmental Engineering, Çorlu Faculty of Engineering, Namık Kemal University, Tekirdağ, Turkey
| | - Merve Fıçıcı
- Department of Environmental Engineering, Çorlu Faculty of Engineering, Namık Kemal University, Tekirdağ, Turkey
| | - Ahmet Altın
- Department of Environmental Engineering, Zonguldak Bülent Ecevit University, Zonguldak, Turkey
| | - Burcu Onat
- Department of Environmental Engineering, Engineering Faculty, Istanbul University-Cerrahpaşa, Avcılar, Istanbul, Turkey
| | - Coşkun Ayvaz
- Department of Environmental Engineering, Engineering Faculty, Istanbul University-Cerrahpaşa, Avcılar, Istanbul, Turkey
| | - Burcu Uzun
- Department of Environmental Engineering, Engineering Faculty, Istanbul University-Cerrahpaşa, Avcılar, Istanbul, Turkey
| | - Arslan Saral
- Department of Environmental Engineering, Civil Engineering Faculty, Yildiz Technical University, Esenler, Istanbul, Turkey
| | - Tuncay Döğeroğlu
- Department of Environmental Engineering, Faculty of Engineering, Eskişehir Technical University, Eskişehir, Turkey
| | - Semra Malkoç
- Department of Environmental Engineering, Faculty of Engineering, Eskişehir Technical University, Eskişehir, Turkey
| | - Özlem Özden Üzmez
- Department of Environmental Engineering, Faculty of Engineering, Eskişehir Technical University, Eskişehir, Turkey
| | - Fatma Kunt
- Department of Environmental Engineering, Necmettin Erbakan University, Konya, Turkey
| | - Senar Aydın
- Department of Environmental Engineering, Necmettin Erbakan University, Konya, Turkey
| | - Melik Kara
- Department of Environmental Engineering, Dokuz Eylül University, Izmir, Turkey
| | - Barış Yaman
- Department of Environmental Engineering, Dokuz Eylül University, Izmir, Turkey
| | - Güray Doğan
- Department of Environmental Engineering, Akdeniz University, Antalya, Turkey
| | - Bihter Olgun
- Department of Environmental Engineering, Akdeniz University, Antalya, Turkey
| | - Ebru N Dokumacı
- Department of Environmental Engineering, Akdeniz University, Antalya, Turkey
| | - Gülen Güllü
- Department of Environmental Engineering, Hacettepe University, Ankara, Turkey
| | - Elif S Uzunpınar
- Department of Environmental Engineering, Middle East Technical University, Ankara, Turkey
| | - Hasan Bayram
- Koç University Research Center for Translational Medicine (KUTTAM), Istanbul, Turkey; Department of Pulmonary Medicine, School of Medicine, Koç University, Istanbul, Turkey.
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Demir E, Yeğit O, Erol A, Akgül SU, Çalışkan B, Bayraktar A, Çalışkan Y, Türkmen A, Savran FO, Sever MS. Relevance of Flow Cytometric Auto-Crossmatch to the Post-transplant Course of Kidney Transplant Recipients. Transplant Proc 2017; 49:477-480. [PMID: 28340816 DOI: 10.1016/j.transproceed.2017.01.023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
INTRODUCTION The crossmatch test is essential prior to kidney transplantation (tx) to confirm compatibility between the donor and the recipient. However, its results can be misleading due to "undetectable antibodies" in the recipient's serum. To establish if undetectable autoantibodies are responsible for a positive result, an auto-crossmatch test can be performed. In this study, we aim to determine the long-term prognostic value of auto-flow cytometric auto-crossmatch (FCXM) test on kidney survival in kidney tx recipients. MATERIALS AND METHODS The primary outcome variable was reduced renal function. Secondary endpoints were incidence of biopsy-confirmed chronic antibody-mediated rejection (CAMR) and recurrent glomerulonephritis (GN). RESULTS There were no differences regarding initial serum creatinine levels between the study and control groups (P = .441). Patients who had positive auto-B FCXM had a significantly reduced renal function compared with the control group (P = .016). Four patients developed biopsy-confirmed CAMR in the study group and 1 patient in the control group (P = .047). Five patients had biopsy-confirmed recurrent GN in the GN study group, and only 1 patient had recurrent GN in the GN control group (P = .026). DISCUSSION Kidney transplant recipients with positive auto-FCXM test had significantly reduced renal function and a higher incidence of recurrent GN and CAMR compared with the control group. The findings of this study suggest a potential role of auto-antibody causing positive auto-FCXM test result, meanwhile increasing the risk of CAMR, recurrent GN, and new-onset diabetes after tx.
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Affiliation(s)
- E Demir
- Division of Nephrology, Department of Internal Medicine, Istanbul Faculty of Medicine, Istanbul University, Istanbul, Turkey.
| | - O Yeğit
- Division of Nephrology, Department of Internal Medicine, Istanbul Faculty of Medicine, Istanbul University, Istanbul, Turkey
| | - A Erol
- Department of Medical Biology, Istanbul Faculty of Medicine, Istanbul University, Istanbul, Turkey
| | - S U Akgül
- Department of Medical Biology, Istanbul Faculty of Medicine, Istanbul University, Istanbul, Turkey
| | - B Çalışkan
- Haseki Training and Research Hospital, Pediatric Infectious Diseases Unit, Istanbul, Turkey
| | - A Bayraktar
- Department of General Surgery, Istanbul Faculty of Medicine, Istanbul University, Istanbul, Turkey
| | - Y Çalışkan
- Division of Nephrology, Department of Internal Medicine, Istanbul Faculty of Medicine, Istanbul University, Istanbul, Turkey
| | - A Türkmen
- Division of Nephrology, Department of Internal Medicine, Istanbul Faculty of Medicine, Istanbul University, Istanbul, Turkey
| | - F O Savran
- Department of Medical Biology, Istanbul Faculty of Medicine, Istanbul University, Istanbul, Turkey
| | - M S Sever
- Division of Nephrology, Department of Internal Medicine, Istanbul Faculty of Medicine, Istanbul University, Istanbul, Turkey
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Pergola C, Gerstmeier J, Mönch B, Çalışkan B, Luderer S, Weinigel C, Barz D, Maczewsky J, Pace S, Rossi A, Sautebin L, Banoglu E, Werz O. The novel benzimidazole derivative BRP-7 inhibits leukotriene biosynthesis in vitro and in vivo by targeting 5-lipoxygenase-activating protein (FLAP). Br J Pharmacol 2015; 171:3051-64. [PMID: 24641614 DOI: 10.1111/bph.12625] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2013] [Revised: 01/25/2014] [Accepted: 02/03/2014] [Indexed: 12/29/2022] Open
Abstract
BACKGROUND AND PURPOSE Leukotrienes (LTs) are inflammatory mediators produced via the 5-lipoxygenase (5-LOX) pathway and are linked to diverse disorders, including asthma, allergic rhinitis and cardiovascular diseases. We recently identified the benzimidazole derivative BRP-7 as chemotype for anti-LT agents by virtual screening targeting 5-LOX-activating protein (FLAP). Here, we aimed to reveal the in vitro and in vivo pharmacology of BRP-7 as an inhibitor of LT biosynthesis. EXPERIMENTAL APPROACH We analysed LT formation and performed mechanistic studies in human neutrophils and monocytes, in human whole blood (HWB) and in cell-free assays. The effectiveness of BRP-7 in vivo was evaluated in rat carrageenan-induced pleurisy and mouse zymosan-induced peritonitis. KEY RESULTS BRP-7 potently suppressed LT formation in neutrophils and monocytes and this was accompanied by impaired 5-LOX co-localization with FLAP. Neither the cellular viability nor the activity of 5-LOX in cell-free assays was affected by BRP-7, indicating that a functional FLAP is needed for BRP-7 to inhibit LTs, and FLAP bound to BRP-7 linked to a solid matrix. Compared with the FLAP inhibitor MK-886, BRP-7 did not significantly inhibit COX-1 or microsomal prostaglandin E2 synthase-1, implying the selectivity of BRP-7 for FLAP. Finally, BRP-7 was effective in HWB and impaired inflammation in vivo, in rat pleurisy and mouse peritonitis, along with reducing LT levels. CONCLUSIONS AND IMPLICATIONS BRP-7 potently suppresses LT biosynthesis by interacting with FLAP and exhibits anti-inflammatory effectiveness in vivo, with promising potential for further development.
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Affiliation(s)
- C Pergola
- Institute of Pharmacy, Friedrich-Schiller-University Jena, Jena, Germany
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