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Park ES, Sullivan DW, Kang DH, Ying Q, Spiegelman CH. Assessment of mobile source contributions in El Paso by PMF receptor modeling coupled with wind direction analysis. Sci Total Environ 2020; 720:137527. [PMID: 32325575 DOI: 10.1016/j.scitotenv.2020.137527] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2019] [Revised: 02/19/2020] [Accepted: 02/22/2020] [Indexed: 06/11/2023]
Abstract
It is well-known that El Paso is the only border area in Texas that has violated national air quality standards. Mobile source emissions (including vehicle exhaust) contribute significantly to air pollution, along with other sources including industrial, residential, and cross-border. This study aims at separating unobserved vehicle emissions from air-pollution mixtures indicated by ambient air quality data. The level of contributions from vehicle emissions to air pollution cannot be determined by simply comparing ambient air quality data with traffic levels because of the various other contributors to overall air pollution. To estimate contributions from vehicle emissions, researchers employed advanced multivariate receptor modeling called positive matrix factorization (PMF) to analyze hydrocarbon data consisting of hourly concentrations measured from the Chamizal air pollution monitoring station in El Paso. The analysis of hydrocarbon data collected at the Chamizal site in 2008 showed that approximately 25% of measured Total Non-Methane Hydrocarbons (TNMHC) was apportioned to motor vehicle exhaust. Using wind direction analysis, researchers also showed that the motor vehicle exhaust contributions to hydrocarbons were significantly higher when winds blow from the south (Mexico) than those when winds blow from other directions. The results from this research can be used to improve understanding source apportionment of pollutants measured in El Paso and can also potentially inform transportation planning strategies aimed at reducing emissions across the region.
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Affiliation(s)
- Eun Sug Park
- Texas A&M Transportation Institute, 3135 TAMU, College Station, TX 77843-3135, United States of America.
| | - David W Sullivan
- The University of Texas at Austin, Center for Energy and Environmental Resources, 10100 Burnet Rd, Bldg 133, MC R7100, Austin, TX 78758-4445, United States of America
| | - Dong Hun Kang
- Texas A&M Transportation Institute, 3135 TAMU, College Station, TX 77843-3135, United States of America
| | - Qi Ying
- Zachry Department of Civil and Environmental Engineering, Texas A&M University, College Station, TX 77843-3136, United States of America
| | - Clifford H Spiegelman
- Department of Statistics, Texas A&M University, College Station, TX 77843-3143, United States of America
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Affiliation(s)
- Eun Sug Park
- Texas A&M Transportation Institute, The Texas A&M University System, College Station, TX
| | - Philip K. Hopke
- Center for Air Resources Engineering and Science, Clarkson University, Potsdam, NY
| | - Inyoung Kim
- Department of Statistics, Virginia Tech University, Blacksburg, VA
| | - Shuman Tan
- Texas A&M Transportation Institute, The Texas A&M University System, College Station, TX
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Park ES, Hopke PK, Oh MS, Symanski E, Han D, Spiegelman CH. Assessment of source-specific health effects associated with an unknown number of major sources of multiple air pollutants: a unified Bayesian approach. Biostatistics 2014; 15:484-97. [PMID: 24622036 DOI: 10.1093/biostatistics/kxu004] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
There has been increasing interest in assessing health effects associated with multiple air pollutants emitted by specific sources. A major difficulty with achieving this goal is that the pollution source profiles are unknown and source-specific exposures cannot be measured directly; rather, they need to be estimated by decomposing ambient measurements of multiple air pollutants. This estimation process, called multivariate receptor modeling, is challenging because of the unknown number of sources and unknown identifiability conditions (model uncertainty). The uncertainty in source-specific exposures (source contributions) as well as uncertainty in the number of major pollution sources and identifiability conditions have been largely ignored in previous studies. A multipollutant approach that can deal with model uncertainty in multivariate receptor models while simultaneously accounting for parameter uncertainty in estimated source-specific exposures in assessment of source-specific health effects is presented in this paper. The methods are applied to daily ambient air measurements of the chemical composition of fine particulate matter ([Formula: see text]), weather data, and counts of cardiovascular deaths from 1995 to 1997 for Phoenix, AZ, USA. Our approach for evaluating source-specific health effects yields not only estimates of source contributions along with their uncertainties and associated health effects estimates but also estimates of model uncertainty (posterior model probabilities) that have been ignored in previous studies. The results from our methods agreed in general with those from the previously conducted workshop/studies on the source apportionment of PM health effects in terms of number of major contributing sources, estimated source profiles, and contributions. However, some of the adverse source-specific health effects identified in the previous studies were not statistically significant in our analysis, which probably resulted because we incorporated parameter uncertainty in estimated source contributions that has been ignored in the previous studies into the estimation of health effects parameters.
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Affiliation(s)
- Eun Sug Park
- Texas A&M Transportation Institute, College Station, TX 77843, USA
| | - Philip K Hopke
- Center for Air Resources Engineering and Science, Clarkson University, Potsdam, NY 13699, USA
| | - Man-Suk Oh
- Department of Statistics, Ewha Women's University, Seoul 120-750, Korea
| | - Elaine Symanski
- University of Texas School of Public Health, Houston, TX 77030, USA
| | - Daikwon Han
- Department of Epidemiology & Biostatistics, Texas A&M University, College Station, TX 77843, USA
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Addona TA, Abbatiello SE, Schilling B, Skates SJ, Mani DR, Bunk DM, Spiegelman CH, Zimmerman LJ, Ham AJL, Keshishian H, Hall SC, Allen S, Blackman RK, Borchers CH, Buck C, Cardasis HL, Cusack MP, Dodder NG, Gibson BW, Held JM, Hiltke T, Jackson A, Johansen EB, Kinsinger CR, Li J, Mesri M, Neubert TA, Niles RK, Pulsipher TC, Ransohoff D, Rodriguez H, Rudnick PA, Smith D, Tabb DL, Tegeler TJ, Variyath AM, Vega-Montoto LJ, Wahlander Å, Waldemarson S, Wang M, Whiteaker JR, Zhao L, Anderson NL, Fisher SJ, Liebler DC, Paulovich AG, Regnier FE, Tempst P, Carr SA. Erratum: Corrigendum: Multi-site assessment of the precision and reproducibility of multiple reaction monitoring–based measurements of proteins in plasma. Nat Biotechnol 2009. [DOI: 10.1038/nbt0909-864b] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Addona TA, Abbatiello SE, Schilling B, Skates SJ, Mani DR, Bunk DM, Spiegelman CH, Zimmerman LJ, Ham AJL, Keshishian H, Hall SC, Allen S, Blackman RK, Borchers CH, Buck C, Cardasis HL, Cusack MP, Dodder NG, Gibson BW, Held JM, Hiltke T, Jackson A, Johansen EB, Kinsinger CR, Li J, Mesri M, Neubert TA, Niles RK, Pulsipher TC, Ransohoff D, Rodriguez H, Rudnick PA, Smith D, Tabb DL, Tegeler TJ, Variyath AM, Vega-Montoto LJ, Wahlander A, Waldemarson S, Wang M, Whiteaker JR, Zhao L, Anderson NL, Fisher SJ, Liebler DC, Paulovich AG, Regnier FE, Tempst P, Carr SA. Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma. Nat Biotechnol 2009; 27:633-41. [PMID: 19561596 DOI: 10.1038/nbt.1546] [Citation(s) in RCA: 819] [Impact Index Per Article: 54.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2009] [Accepted: 05/31/2009] [Indexed: 01/13/2023]
Abstract
Verification of candidate biomarkers relies upon specific, quantitative assays optimized for selective detection of target proteins, and is increasingly viewed as a critical step in the discovery pipeline that bridges unbiased biomarker discovery to preclinical validation. Although individual laboratories have demonstrated that multiple reaction monitoring (MRM) coupled with isotope dilution mass spectrometry can quantify candidate protein biomarkers in plasma, reproducibility and transferability of these assays between laboratories have not been demonstrated. We describe a multilaboratory study to assess reproducibility, recovery, linear dynamic range and limits of detection and quantification of multiplexed, MRM-based assays, conducted by NCI-CPTAC. Using common materials and standardized protocols, we demonstrate that these assays can be highly reproducible within and across laboratories and instrument platforms, and are sensitive to low mug/ml protein concentrations in unfractionated plasma. We provide data and benchmarks against which individual laboratories can compare their performance and evaluate new technologies for biomarker verification in plasma.
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Affiliation(s)
- Terri A Addona
- Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA
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Watters RL, Carroll RJ, Spiegelman CH. Error modeling and confidence interval estimation for inductively coupled plasma calibration curves. Anal Chem 2002. [DOI: 10.1021/ac00140a013] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Spiegelman CH, Bennett JF, Vannucci M, McShane MJ, Cote GL. A Transparent Tool for Seemingly Difficult Calibrations: The Parallel Calibration Method. Anal Chem 2000. [DOI: 10.1021/ac001704u] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Sug Park E, Henry RC, Spiegelman CH. Estimating the number of factors to include in a high-dimensional multivariate bilinear model. COMMUN STAT-SIMUL C 2000. [DOI: 10.1080/03610910008813637] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Spiegelman CH, Bennett JF, Vannucci M, McShane MJ, Coté GL. A transparent tool for seemingly difficult calibrations: the parallel calibration method. Anal Chem 2000; 72:135-40. [PMID: 10655645 DOI: 10.1021/ac990584r] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A new easy-to-understand calibration method for the analysis of spectral data is developed. The "parallel calibration" method is logically simple and intuitive yet often provides an improvement over more complex standard calibration methods. A description of the algorithm with a technical justification for the parallel algorithm is presented, underscoring the simplicity of the approach. In addition, performance as compared to that of the standard methods of classical least-squares (CLS) and partial least-squares (PLS) regression is studied. Calibrations are carried out on a computer-generated simulation data set as well as two scientific data sets. The results show that the parallel method gives results comparable to or better than those of CLS and PLS methods in terms of mean squared error.
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Affiliation(s)
- C H Spiegelman
- Department of Statistics, Texas A&M University, College Station 77843, USA
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Spiegelman CH, McShane MJ, Goetz MJ, Motamedi M, Yue QL, Coté GL. Theoretical Justification of Wavelength Selection in PLS Calibration: Development of a New Algorithm. Anal Chem 1998; 70:35-44. [DOI: 10.1021/ac9705733] [Citation(s) in RCA: 209] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Clifford H. Spiegelman
- Department of Statistics and Biomedical Engineering Program, Texas A&M University, College Station, Texas 77845, and Biomedical Engineering Center, Laser & Spectroscopy Program, University of Texas Medical Branch, Galveston, Texas 77550
| | - Michael J. McShane
- Department of Statistics and Biomedical Engineering Program, Texas A&M University, College Station, Texas 77845, and Biomedical Engineering Center, Laser & Spectroscopy Program, University of Texas Medical Branch, Galveston, Texas 77550
| | - Marcel J. Goetz
- Department of Statistics and Biomedical Engineering Program, Texas A&M University, College Station, Texas 77845, and Biomedical Engineering Center, Laser & Spectroscopy Program, University of Texas Medical Branch, Galveston, Texas 77550
| | - Massoud Motamedi
- Department of Statistics and Biomedical Engineering Program, Texas A&M University, College Station, Texas 77845, and Biomedical Engineering Center, Laser & Spectroscopy Program, University of Texas Medical Branch, Galveston, Texas 77550
| | - Qin Li Yue
- Department of Statistics and Biomedical Engineering Program, Texas A&M University, College Station, Texas 77845, and Biomedical Engineering Center, Laser & Spectroscopy Program, University of Texas Medical Branch, Galveston, Texas 77550
| | - Gerard L. Coté
- Department of Statistics and Biomedical Engineering Program, Texas A&M University, College Station, Texas 77845, and Biomedical Engineering Center, Laser & Spectroscopy Program, University of Texas Medical Branch, Galveston, Texas 77550
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Abstract
Regulatory agencies and photochemical models of ozone rely on self-reported industrial emission rates of organic gases. Incorrect self-reported emissions can severely impact on air quality models and regulatory decisions. We compared self-reported emissions of organic gases in Houston, Texas, to measurements at a receptor site near the Houston ship channel, a major petrochemical complex. We analyzed hourly observations of total nonmethane organic carbon and 54 hydrocarbon compounds from C-2 to C-9 for the period June through November, 1993. We were able to demonstrate severe inconsistencies between reported emissions and major sources as derived from the data using a multivariate receptor model. The composition and the location of the sources as deduced from the data are not consistent with the reported industrial emissions. On the other hand, our observationally based methods did correctly identify the location and composition of a relatively small nearby chemical plant. This paper provides strong empirical evidence that regulatory agencies and photochemical models are making predictions based on inaccurate industrial emissions.
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Affiliation(s)
- R C Henry
- Department of Civil & Environmental Engineering, University of Southern California, 3620 South Vermont Avenue, Los Angeles, CA 90089-2531, USA
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Spiegelman CH, Dattner S. Applying and developing receptor models to the 1990 El Paso air data: a look at receptor modeling with uncharacterized sources and graphical diagnostics. Anal Chim Acta 1993. [DOI: 10.1016/0003-2670(93)80447-s] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Spiegelman CH. Two Pitfalls of Using Standard Regression Diagnostics When Both Xand YHave Measurement Error. AM STAT 1986. [DOI: 10.1080/00031305.1986.10475402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Spiegelman CH. An Iterative Calibration Curve Procedure. J Res Natl Bur Stand (1977) 1984; 89:187-192. [PMID: 34566123 PMCID: PMC6768243 DOI: 10.6028/jres.089.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2023] Open
Abstract
Calibration curves are an important part of many measurement processes. The user of a fitted calibration curve must know its precision and accuracy. These are determined in a timely fashion using the data iteratively. This paper gives a method that divides the data into training and test groups. The test group is iteratively checked to see that a prechosen nominal confidence interval probability of coverage is met. If on the basis of this check the calibration experiment is completed, the nominal probability level is shown to still be valid.
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Billick IH, Shier DR, Spiegelman CH. Sensitivity of trends in geometric mean blood levels to random measurement errors. Sci Total Environ 1982; 24:233-248. [PMID: 7123206 DOI: 10.1016/0048-9697(82)90002-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
A statistical model is investigated that expresses observations, such as blood lead levels, as an additive function of true levels and random measurement errors. Both empirical results (obtained from a series of computer simulation experiments) and theoretical results indicate how certain summary statistics for the observations vary in response to random measurement errors. Such results are applied to a very large data base of pediatric blood lead levels collected in New York City during 1970-1976, and they indicate that the observed trends in geometric mean blood lead levels are not significantly altered by the possible presence of measurement errors.
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Lechner JA, Reeve CP, Spiegelman CH. An Implementation of the Scheffé Approach to Calibration Using Spline Functions, Illustrated by a Pressure-Volume Calibration. Technometrics 1982. [DOI: 10.1080/00401706.1982.10487763] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Abstract
The result in this paper explains some of the qualitative nature of Jensen's inequality. It is shown that the more disperse the distribution of a random variable is, the smaller is the expectation of any concave function of it. This result can be used to show the inadequacy of some current methods of reporting environmental data by using geometric means, and it extends the result of I. Billick, D. Shier, and C. H. Spiegelman, where symmetry of the error in environmental measurements is assumed.
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Abstract
The measurement process uncertainty is propagated through the use of a calibration curve. The magnitude and direction of this uncertainty depends on the choice of the controllable variable in producing the calibration curve; in other words, the design of the calibration experiment. In this paper this design is discussed in the context of Scheffé's approach to the uncertainties of a calibration curve and in particular for the case in which the calibration curve is a linear spline. A class of appropriate designs is given, which depend on the location of the knots and the slopes of the segments. One of these designs is quickly calculable and can be found without a computer. Based on these results, a design approach is suggested for the case in which the knots are not known exactly.
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Affiliation(s)
| | - W J Studden
- Department of Statistics, Purdue University, West Lafayette, IN 46907
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