1
|
Upadhyay R, Dhakal A, Karivedu V, Wheeler C, Hoyd R, Bhateja P, Bonomi M, Valentin S, Gamez ME, Konieczkowski DJ, Baliga S, Grecula JC, Blakaj DM, Gogineni E, Mitchell DL, Denko N, Jhawar SR, Spakowicz D. Comparative Analysis of Tumor Microbiome, Molecular Profile and Immune Cell Abundance by HPV Status in Head and Neck Cancers and Their Impact on Survival. Int J Radiat Oncol Biol Phys 2023; 117:e264. [PMID: 37785006 DOI: 10.1016/j.ijrobp.2023.06.1221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/04/2023]
Abstract
PURPOSE/OBJECTIVE(S) Traditional clinical and molecular prognostic factors offer valuable insight into the heterogeneous natural history and treatment response of head and neck squamous cell carcinoma (HNSCC) yet fail to explain the full spectrum of observed variability. The tumor microenvironment (TME), comprising microbiome and immune cells can impact treatment response and prognosis. We analyzed The Cancer Genome Atlas (TCGA) to evaluate the association of specific microbes and genes in TME with survival and their differential expression in HPV positive (+) and HPV negative (-) HNSCC. MATERIALS/METHODS HNSCC RNA sequencing (RNAseq) samples from TCGA were processed through the Exogenous sequencing in Tumors and Immune Cells (ExoTIC) pipeline to identify gene expression and microbial presence. HPV status was assessed by detection of papillomaviridae family of microbes. Clinical data from TCGA was extracted to compare overall survival (OS) and control for competing variables using Cox proportional hazards regression. Difference in immune cell abundance was evaluated by Kruskal-Wallis test. All statistical analysis was performed using R. RESULTS A total of 498 RNAseq samples from TCGA were analyzed. Oral cavity, oropharynx, hypopharynx, and larynx tumors comprised 21.6%, 15%, 1.8%, and 22.2% of specimens, respectively. HPV was detected in 111 patients (22%), most commonly Alpha papillomavirus 9 (90.1%). Of the 5838 enriched microbes, 330 were significantly associated with OS after controlling for tumor stage, smoking, and age. Specifically, the presence of Alpha papillomavirus 9 was associated with significantly improved OS [adjusted HR = 0.60 (95% CI 0.40 - 0.89, p = 0.01)]. Microbial species found in more abundance in HPV- tumors included Citrobacter farmeri, Thermoanaerobacter kivui and Yersinia pestis which are gram negative anaerobes. Genes related to cellular transport and DNA repair were enriched while genes related to proliferation (e.g., SAGE1) were depleted in HPV+ samples. HPV- tumors had a significantly higher number of M0 (p < 0.001) and M2 macrophages (p = 0.035) while HPV+ tumors had more T regulatory cells (p < 0.001) and CD8+ T-cells (p < 0.001). CONCLUSION Tumor microenvironment was significantly associated with survival for HNSCC patients, with particular microbes such as Alpha papillomavirus 9 correlating with improved OS. Greater abundance of certain anaerobic microbes was seen in HPV- tumors. These findings suggest TME can be used to predict patient outcomes and potentially guide personalized treatment approaches. We found an abundance of M0 and M2 macrophages in HPV- tumors, which are considered pro-tumorigenic, while anti-tumor M1 macrophages were similar in the two groups. This may help identify mechanism of resistance to immunotherapies and tailor novel immunotherapy combinations in specific patient subgroups. With further prospective research and external validation these findings have the potential to significantly impact the way we treat HNSCC in the future.
Collapse
Affiliation(s)
| | - A Dhakal
- The Ohio State University College of Medicine, Columbus, OH
| | - V Karivedu
- The Ohio State University Wexner Medical Center, Columbus, OH
| | - C Wheeler
- The Ohio State University Wexner Medical Center, Columbus, OH
| | - R Hoyd
- The Ohio State University Wexner Medical Center, Columbus, OH
| | - P Bhateja
- The Ohio State University Wexner Medical Center, Columbus, OH
| | - M Bonomi
- Department of Medical Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | - S Valentin
- The Ohio State University Wexner Medical Center, Columbus, OH
| | - M E Gamez
- Department of Radiation Oncology, Mayo Clinic, Rochester, MN
| | | | - S Baliga
- Ohio State University, Columbus, OH
| | - J C Grecula
- Department of Radiation Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | - D M Blakaj
- James Cancer Hospital and Solove Research Institute, The Ohio State University, Columbus, OH
| | - E Gogineni
- Department of Radiation Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | - D L Mitchell
- Department of Radiation Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | - N Denko
- Department of Radiation Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | - S R Jhawar
- Department of Radiation Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | - D Spakowicz
- The Ohio State University Wexner Medical Center, Columbus, OH
| |
Collapse
|
2
|
Dibs K, Konieczkowski DJ, Grecula JC, Mitchell DL, Baliga S, Gogineni E, Barve R, Jhawar SR, Zoller W, Gamez ME, Blakaj DM. Scalp Volumetric Modulated Arc Therapy Using 3D Milled Bolus: Dosimetry, Toxicity and Outcome. Int J Radiat Oncol Biol Phys 2023; 117:e292-e293. [PMID: 37785077 DOI: 10.1016/j.ijrobp.2023.06.1289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/04/2023]
Abstract
PURPOSE/OBJECTIVE(S) Radiotherapy for scalp lesions is frequently challenging due to the competing needs for target volume coverage, sparing of numerous critical nearby OARs, and reproducible bolus setup despite the irregular and highly convex scalp geometry. Here, we evaluate the use of 3D milled bolus in treating such tumors. MATERIALS/METHODS A retrospective analysis of scalp patients (pts) treated between 2016-2022 using 3D milled bolus and VMAT. All pts were treated with 6 MV photon beams, IGRT via daily CBCT, and 6-degree of Freedom (6-DOF) couch tops. Pts demographics, tumor characteristics, DVHs, toxicities and outcomes were evaluated. Regional control (RC) defined as control of the disease in the rest of the scalp/neck and local control (LC) defined as disease control within the PTV. RESULTS A total of 23 pts were identified. Median age 74 (46-85), ECOG performance status was 0-1 in 20 pts (87%) and 92% were males. The histopathologies were squamous cell carcinoma (SCC) (61%), angiosarcoma (AS) (35%) and melanoma (4%). 35% of pts were treated with definitive intent to gross disease; the remaining 65% were treated post-operatively, 22% with microscopically positive margins and 43% with negative margins. 21% had perineural invasion (PNI), and none had lymphovascular invasion (LVI). 78% had T3/T4 and 13% had N+ disease. Median radiation dose was 66 Gy (60-69.96Gy). 44% received concurrent systemic therapy (Paclitaxel 22%, Cemiplimab 12%, Temozolomide 5%, Nivolumab 5%). In 40% of pts, the whole scalp was treated; in the remaining 60%, the median ratio of PTV volume to scalp volume was 35% (25-90%). 22% of pts (n = 5) had neck irradiation for prophylactic (3pts)/ neck lymph node involvement (2 pts). The median brain Dmax was 65 Gy (52.5-71.9), median brain mean dose was 15.4Gy (1.4-38.4), median eye Dmax was 10.9Gy (0.23-49), median cochlea mean was 8.4Gy (0.1-20.4), median lacrimal gland mean dose was 6.8Gy (0.11-38), median hippocampus Dmin was 5.9Gy (0.1-14.9) and Dmax was 10Gy (0.3-23). Most common acute side effects were grade 1-2 fatigue (100%), grade 1-2 pain (78%), grade 1 dysgeusia (22%), grade 1-2 dermatitis (74%). The only grade > = 3 adverse event was grade 3 dermatitis in 26%. Regarding long-term side effects, one pt had grade 2 osteoradionecrosis and other one developed grade 2 skin ulcer. 17% developed grade 1 memory impairment. 17% had grade 1 eye dryness. None developed brain radionecrosis. At a median follow-up was 14.4 months (1-73.5), the 1-yr LC was 96%. The 1-yr RC was 75% overall, 100% in angiosarcoma vs 62% in SCC (p = 0.18). Of the 4 regional recurrences, 1 pt had marginal recurrence along V1, 2 had neck nodal recurrence, and 1 had recurrence elsewhere in the scalp. 1-yr DMFS was 62% overall. 1-yr OS was 78% overall, 100% for AS vs 64% for SCC (P = 0.097). CONCLUSION VMAT planning with 3D milled bolus permits technically sound radiotherapy for scalp targets with an acceptable toxicity profile and relatively favorable clinical outcomes. This approach warrants further evaluation in a larger prospective study.
Collapse
Affiliation(s)
- K Dibs
- The Ohio State University Wexner Medical Center, Columbus, OH
| | | | - J C Grecula
- Department of Radiation Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | - D L Mitchell
- Department of Radiation Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | - S Baliga
- Ohio State University, Columbus, OH
| | - E Gogineni
- Department of Radiation Oncology and Molecular Radiation Sciences, Johns Hopkins University School of Medicine, Baltimore, MD
| | - R Barve
- The James Cancer Center, Ohio State University Wexner Medical Center, Columbus, OH
| | - S R Jhawar
- Department of Radiation Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | - W Zoller
- The James Cancer Center, Ohio State University Wexner Medical Center, Columbus, OH
| | - M E Gamez
- Department of Radiation Oncology, Mayo Clinic, Rochester, MN
| | - D M Blakaj
- James Cancer Hospital and Solove Research Institute, The Ohio State University, Columbus, OH
| |
Collapse
|
3
|
Dibs K, Palmer JD, Konieczkowski DJ, Gogineni E, Mitchell DL, Raval R, Baliga S, Barve R, Elguindy AN, Jhawar SR, Gamez ME, Blakaj DM. Brachial Plexus Tolerance to Standard Fractionation Re-Irradiation: The Ohio State University Experience. Int J Radiat Oncol Biol Phys 2023; 117:S124. [PMID: 37784320 DOI: 10.1016/j.ijrobp.2023.06.465] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/04/2023]
Abstract
PURPOSE/OBJECTIVE(S) Factors contributing to brachial plexopathy (BPP) in the re-irradiation setting need further assessment. Preliminary work revealed that higher the doses and the use of concurrent cisplatin were associated with higher risk of BPP. Here, we expand our cohort and increase our follow-up duration, given the late nature of BPP development. MATERIALS/METHODS Sixty-two BP sites with 41 patients (pts), treated between 2015 and 2020 for recurrent H&N cancer, were assessed. Contours and plans were reviewed via a prospective multidisciplinary chart rounds prior to treatment delivery and re-verified by two authors prior to this analysis. Kaplan-Meier and logistic regression were used to test the correlation between variables and outcomes. ROC was used to evaluate the cutoff values. Common terminology criteria of adverse events were used to define BPP. RESULTS The median age of pts was 63 (29-78) and 65% were males. Median prescription dose was 70 Gy (60-70) for the 1st course and 66 Gy (44-70) for the 2nd course. 13% received intraoperative radiotherapy (IORT) during salvage treatment ranging from 10-15 Gy. 30% of pts in the 1st course and 80% in the 2nd course of pts had surgery. Concurrent chemotherapy was delivered to 71% of pts in the 1st course (Cisplatin 34%, Cetuximab 22%, Carboplatin +/- Paclitaxel 15%) and 76% in the 2nd course (Carboplatin/Paclitaxel 41%, Cisplatin 19%, Cetuximab 12%, Nivolumab 4%). The median interval between courses was 26.5 months (8-221). The median cumulative Dmax (0.03cc) and mean dose to the BP were 96.5 Gy (51-144) and 61.5 Gy (15-110), respectively. The median V60, V70, V80, V90, and V100 were 3.6cc (0.03-10.4), 2.4cc (0-9.9), 1.3cc (0-9.3), 0.6cc (0-8.4), and 0.0015cc (0-7.2), respectively. The median follow-up after the completion of the 2nd RT course was 19 months (1.4-71.5). The 1-yr incidence of BPP was 17%, with a median time to onset of 8.9 months (1-16.6). Factors associated with development of BPP were cumulative Dmax > 100 Gy (HR 1.06, [CI 1.014-1.1], p = 0.009), cumulative mean dose >70 Gy (HR 1.05, [CI 1.01-1.09], p = 0.03), V80 > 1.6cc (HR 1.2. [CI 0.99- 1.52], p = 0.06), V90 > 1cc (HR 1.3, [CI 1.013-1.58], p = 0.038), V100 > 0.3cc (HR 1.33, [1.044-1.69], p = 0.021) and the usage of concurrent cisplatin during the 2nd course (HR 8.9, [CI 2.36-33.75], p = 0.001). Other factors including gender, age, surgery, treatment interval between the two courses, IORT, V60, and V70 were not associated with increased risk of BPP. The incidence of grade 1, grade 2, and grade 3 BPP were 9.6%, 3% and 2.4%, respectively. The 1-yr OS was 70% and LC was 60%. CONCLUSION At a median follow up of 19 months, the 1-yr incidence of grade 2 and 3 BPP was approximately 5%. Cisplatin during the 2nd course, cumulative metrics of Dmax 100 Gy, mean 70 Gy, V80 1.6cc, V90 1cc and V100 0.3cc were associated with development of BPP. Prospective study, longer follow up, and higher numbers are warranted. To our knowledge, this represents the largest cohort and longest follow up yet reported for BPP in the re-irradiation setting.
Collapse
Affiliation(s)
- K Dibs
- The Ohio State University Wexner Medical Center, Columbus, OH
| | - J D Palmer
- Department of Radiation Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | | | - E Gogineni
- Department of Radiation Oncology and Molecular Radiation Sciences, Johns Hopkins University School of Medicine, Baltimore, MD
| | - D L Mitchell
- Department of Radiation Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | - R Raval
- Department of Radiation Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | - S Baliga
- Ohio State University, Columbus, OH
| | - R Barve
- Department of Radiation Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | - A N Elguindy
- The James Cancer Center, Ohio State University Wexner Medical Center, Columbus, OH
| | - S R Jhawar
- Department of Radiation Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | - M E Gamez
- Department of Radiation Oncology, Mayo Clinic, Rochester, MN
| | - D M Blakaj
- James Cancer Hospital and Solove Research Institute, The Ohio State University, Columbus, OH
| |
Collapse
|
4
|
Barve R, Blakaj DM, Yildiz V, Jhawar SR, Mitchell DL, Konieczkowski DJ, Gogineni E, Bhateja P, Bonomi M, Baliga S. Toxicity and Outcomes of Definitive Local Therapy in Elderly Patients with HPV-Associated Oropharyngeal Cancer. Int J Radiat Oncol Biol Phys 2023; 117:e566. [PMID: 37785731 DOI: 10.1016/j.ijrobp.2023.06.1890] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/04/2023]
Abstract
PURPOSE/OBJECTIVE(S) The incidence of human papillomavirus (HPV) associated oropharyngeal squamous cell carcinoma (HPV-OPSCC) has increased in elderly patients. It is unclear if survival outcomes in elderly patients are similar to those seen in younger patients with HPV-OPSCC. In this study we evaluated disease outcomes and toxicity in an elderly HPV-OPSCC population treated with curative-intent treatment of radiotherapy with or without chemotherapy. MATERIALS/METHODS We performed a retrospective study of elderly patients (≥70 years old) with HPV-OPSCC treated between 2011-2021 with radiation therapy (RT) with or without chemotherapy. Time to event analysis for overall survival (OS), local control, and progression free survival (PFS) were estimated using the Kaplan-Meier method. Univariate and multivariate Cox regression models were used to estimate the hazard ratio associated with the covariates. RESULTS We identified 77 elderly HPV-OPSCC patients, of which 60 (78%) were treated with concurrent chemotherapy. Twenty (26%) received concurrent Carboplatin and Taxol, 16 (21%) received Cetuximab, 14 (18%) received Cisplatin,7 (9%) received Carboplatin alone, and 2 (2%) received immunotherapy (Pembrolizumab or Nivolumab). The majority of patients received a radiation dose of 69.96 Gy or 70 Gy (89%). Forty-seven patients (61%) were stage I, 11 (14%) were stage II, 16 (21%) were Stage III, and 3 (4%) had stage IV disease. 50 patients (64%) were former smokers, 27 (35%) were nonsmokers and 1 (1%) is a current smoker. 37 patients (48%) had a ≥10 pack year smoking history. The 5-year OS, LC, and PFS for the entire cohort was 61%, 94%, and 58%, respectively. On univariate analysis, ECOG performance status (HR 0.22, [CI 0.06-0.78], p = 0.019) and Charlson Comorbidity Index (CCI) (HR 1.33, [CI 1.06-1.69], p = 0.014) were significant predictors of OS. On multivariate analysis, only CCI (HR 1.34, [CI 1.02-1.77], p = 0.035) was a significant predictor of OS. The rate of long-term feeding tube dependency was 9%. Late toxicities include osteoradionecrosis in 4 patients (5%), aspiration in 3 patients (4%), and esophageal stricture in 2 patients (3%). CONCLUSION Elderly HPV-OPSCC patients treated with definitive intent radiotherapy with or without chemotherapy have favorable disease outcomes with low rates of late toxicity. The Charlson-Comorbidity Index can identify a subset of patients who may have a prolonged OS, and therefore may benefit from more aggressive treatment.
Collapse
Affiliation(s)
- R Barve
- Department of Radiation Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | - D M Blakaj
- Department of Radiation Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | - V Yildiz
- The Ohio State University Wexner Medical Center, Columbus, OH
| | - S R Jhawar
- Department of Radiation Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | - D L Mitchell
- Department of Radiation Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | - D J Konieczkowski
- Department of Radiation Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | - E Gogineni
- Department of Radiation Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | - P Bhateja
- Department of Medical Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | - M Bonomi
- Department of Medical Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| | - S Baliga
- Department of Radiation Oncology, The Ohio State University Wexner Medical Center, Columbus, OH
| |
Collapse
|
5
|
Hanley KG, McFadden JP, Mitchell DL, Fowler CM, Stone SW, Yelle RV, Mayyasi M, Ergun RE, Andersson L, Benna M, Elrod MK, Jakosky BM. In Situ Measurements of Thermal Ion Temperature in the Martian Ionosphere. J Geophys Res Space Phys 2021; 126:e2021JA029531. [PMID: 35865356 PMCID: PMC9286691 DOI: 10.1029/2021ja029531] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/04/2021] [Revised: 10/22/2021] [Accepted: 11/19/2021] [Indexed: 06/15/2023]
Abstract
In situ measurements of ionospheric and thermospheric temperatures are experimentally challenging because orbiting spacecraft typically travel supersonically with respect to the cold gas and plasma. We present O 2 + temperatures in Mars' ionosphere derived from data measured by the SupraThermal And Thermal Ion Composition instrument onboard the Mars Atmosphere and Volatile EvolutioN spacecraft. We focus on data obtained during nine special orbit maneuvers known as Deep Dips, during which MAVEN lowered its periapsis altitude from the nominal 150 to 120 km for 1 week in order to sample the ionospheric main peak and approach the homopause. We use two independent techniques to calculate ion temperatures from the measured energy and angular widths of the supersonic ram ion beam. After correcting for background and instrument response, we are able to measure ion temperatures as low as 100 K with associated uncertainties as low as 10%. It is theoretically expected that ion temperatures will converge to the neutral temperature at altitudes below the exobase region (∼180-200 km) due to strong collisional coupling; however, no evidence of the expected thermalization is observed. We have eliminated several possible explanations for the observed temperature difference between ions and neutrals, including Coulomb collisions with electrons, Joule heating, and heating caused by interactions with the spacecraft. The source of the energy maintaining the high ion temperatures remains unclear, suggesting that a fundamental piece of physics is missing from existing models of the Martian ionosphere.
Collapse
Affiliation(s)
- K. G. Hanley
- Space Sciences LaboratoryUniversity of California BerkeleyBerkeleyCAUSA
| | - J. P. McFadden
- Space Sciences LaboratoryUniversity of California BerkeleyBerkeleyCAUSA
| | - D. L. Mitchell
- Space Sciences LaboratoryUniversity of California BerkeleyBerkeleyCAUSA
| | - C. M. Fowler
- Space Sciences LaboratoryUniversity of California BerkeleyBerkeleyCAUSA
- Department of Physics and AstronomyWest Virginia UniversityMorgantownWVUSA
| | - S. W. Stone
- Lunar and Planetary LaboratoryUniversity of ArizonaTucsonAZUSA
| | - R. V. Yelle
- Lunar and Planetary LaboratoryUniversity of ArizonaTucsonAZUSA
| | - M. Mayyasi
- Astronomy DepartmentBoston UniversityBostonMAUSA
| | - R. E. Ergun
- Laboratory for Atmospheric and Space PhysicsUniversity of Colorado BoulderBoulderCOUSA
| | - L. Andersson
- Laboratory for Atmospheric and Space PhysicsUniversity of Colorado BoulderBoulderCOUSA
| | - M. Benna
- Center for Research and Exploration in Space Science and TechnologyNASA Goddard Space Flight CenterGreenbeltMDUSA
- University of MarylandBaltimore CountyMDUSA
| | - M. K. Elrod
- Center for Research and Exploration in Space Science and TechnologyNASA Goddard Space Flight CenterGreenbeltMDUSA
- University of MarylandCollege ParkMDUSA
| | - B. M. Jakosky
- Laboratory for Atmospheric and Space PhysicsUniversity of Colorado BoulderBoulderCOUSA
| |
Collapse
|
6
|
Angelopoulos V, Cruce P, Drozdov A, Grimes EW, Hatzigeorgiu N, King DA, Larson D, Lewis JW, McTiernan JM, Roberts DA, Russell CL, Hori T, Kasahara Y, Kumamoto A, Matsuoka A, Miyashita Y, Miyoshi Y, Shinohara I, Teramoto M, Faden JB, Halford AJ, McCarthy M, Millan RM, Sample JG, Smith DM, Woodger LA, Masson A, Narock AA, Asamura K, Chang TF, Chiang CY, Kazama Y, Keika K, Matsuda S, Segawa T, Seki K, Shoji M, Tam SWY, Umemura N, Wang BJ, Wang SY, Redmon R, Rodriguez JV, Singer HJ, Vandegriff J, Abe S, Nose M, Shinbori A, Tanaka YM, UeNo S, Andersson L, Dunn P, Fowler C, Halekas JS, Hara T, Harada Y, Lee CO, Lillis R, Mitchell DL, Argall MR, Bromund K, Burch JL, Cohen IJ, Galloy M, Giles B, Jaynes AN, Le Contel O, Oka M, Phan TD, Walsh BM, Westlake J, Wilder FD, Bale SD, Livi R, Pulupa M, Whittlesey P, DeWolfe A, Harter B, Lucas E, Auster U, Bonnell JW, Cully CM, Donovan E, Ergun RE, Frey HU, Jackel B, Keiling A, Korth H, McFadden JP, Nishimura Y, Plaschke F, Robert P, Turner DL, Weygand JM, Candey RM, Johnson RC, Kovalick T, Liu MH, McGuire RE, Breneman A, Kersten K, Schroeder P. The Space Physics Environment Data Analysis System (SPEDAS). Space Sci Rev 2019; 215:9. [PMID: 30880847 PMCID: PMC6380193 DOI: 10.1007/s11214-018-0576-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2018] [Accepted: 12/29/2018] [Indexed: 05/31/2023]
Abstract
With the advent of the Heliophysics/Geospace System Observatory (H/GSO), a complement of multi-spacecraft missions and ground-based observatories to study the space environment, data retrieval, analysis, and visualization of space physics data can be daunting. The Space Physics Environment Data Analysis System (SPEDAS), a grass-roots software development platform (www.spedas.org), is now officially supported by NASA Heliophysics as part of its data environment infrastructure. It serves more than a dozen space missions and ground observatories and can integrate the full complement of past and upcoming space physics missions with minimal resources, following clear, simple, and well-proven guidelines. Free, modular and configurable to the needs of individual missions, it works in both command-line (ideal for experienced users) and Graphical User Interface (GUI) mode (reducing the learning curve for first-time users). Both options have "crib-sheets," user-command sequences in ASCII format that can facilitate record-and-repeat actions, especially for complex operations and plotting. Crib-sheets enhance scientific interactions, as users can move rapidly and accurately from exchanges of technical information on data processing to efficient discussions regarding data interpretation and science. SPEDAS can readily query and ingest all International Solar Terrestrial Physics (ISTP)-compatible products from the Space Physics Data Facility (SPDF), enabling access to a vast collection of historic and current mission data. The planned incorporation of Heliophysics Application Programmer's Interface (HAPI) standards will facilitate data ingestion from distributed datasets that adhere to these standards. Although SPEDAS is currently Interactive Data Language (IDL)-based (and interfaces to Java-based tools such as Autoplot), efforts are under-way to expand it further to work with python (first as an interface tool and potentially even receiving an under-the-hood replacement). We review the SPEDAS development history, goals, and current implementation. We explain its "modes of use" with examples geared for users and outline its technical implementation and requirements with software developers in mind. We also describe SPEDAS personnel and software management, interfaces with other organizations, resources and support structure available to the community, and future development plans. ELECTRONIC SUPPLEMENTARY MATERIAL The online version of this article (10.1007/s11214-018-0576-4) contains supplementary material, which is available to authorized users.
Collapse
Affiliation(s)
- V. Angelopoulos
- Department of Earth, Planetary and Space Sciences, and Institute of Geophysics and Planetary Physics, University of California, Los Angeles, USA
| | - P. Cruce
- Department of Earth, Planetary and Space Sciences, and Institute of Geophysics and Planetary Physics, University of California, Los Angeles, USA
| | - A. Drozdov
- Department of Earth, Planetary and Space Sciences, and Institute of Geophysics and Planetary Physics, University of California, Los Angeles, USA
| | - E. W. Grimes
- Department of Earth, Planetary and Space Sciences, and Institute of Geophysics and Planetary Physics, University of California, Los Angeles, USA
| | - N. Hatzigeorgiu
- Space Sciences Laboratory, University of California, Berkeley, USA
| | - D. A. King
- Space Sciences Laboratory, University of California, Berkeley, USA
| | - D. Larson
- Space Sciences Laboratory, University of California, Berkeley, USA
| | - J. W. Lewis
- Space Sciences Laboratory, University of California, Berkeley, USA
| | - J. M. McTiernan
- Space Sciences Laboratory, University of California, Berkeley, USA
| | | | - C. L. Russell
- Department of Earth, Planetary and Space Sciences, and Institute of Geophysics and Planetary Physics, University of California, Los Angeles, USA
| | - T. Hori
- Institute for Space-Earth Environmental Research, Nagoya University, Nagoya, Japan
| | | | - A. Kumamoto
- Tohoku University, 6-3, Aoba, Aramaki, Aoba Sendai, 980-8578 Japan
| | - A. Matsuoka
- Institute of Space and Astronautical Science, Japan Aerospace Exploration Agency, Sagamihara, Japan
| | - Y. Miyashita
- Korea Astronomy and Space Science Institute, Daejeon, South Korea
| | - Y. Miyoshi
- Institute for Space-Earth Environmental Research, Nagoya University, Nagoya, Japan
| | - I. Shinohara
- Institute of Space and Astronautical Science, Japan Aerospace Exploration Agency, Sagamihara, Japan
| | - M. Teramoto
- Institute for Space-Earth Environmental Research, Nagoya University, Nagoya, Japan
| | | | - A. J. Halford
- Space Sciences Department, The Aerospace Corporation, Chantilly, VA USA
| | - M. McCarthy
- Department of Earth and Space Sciences, University of Washington, Seattle, WA USA
| | - R. M. Millan
- Department of Physics and Astronomy, Dartmouth College, Hanover, NH USA
| | - J. G. Sample
- Department of Physics, Montana State University, Bozeman, MT USA
| | - D. M. Smith
- Santa Cruz Institute of Particle Physics and Department of Physics, University of California, Santa Cruz, CA 95064 USA
| | - L. A. Woodger
- Department of Physics and Astronomy, Dartmouth College, Hanover, NH USA
| | - A. Masson
- European Space Agency, ESAC, SCI-OPD, Madrid, Spain
| | - A. A. Narock
- ADNET Systems Inc., NASA Goddard Space Flight Center, Greenbelt, MD USA
| | - K. Asamura
- Institute of Space and Astronautical Science, Japan Aerospace Exploration Agency, Sagamihara, Japan
| | - T. F. Chang
- Institute for Space-Earth Environmental Research, Nagoya University, Nagoya, Japan
| | - C.-Y. Chiang
- Institute of Space and Plasma Sciences, National Cheng Kung University, Tainan, Taiwan
| | - Y. Kazama
- Academia Sinica Institute of Astronomy and Astrophysics, Taipei, Taiwan
| | - K. Keika
- Department of Earth and Planetary Science, Graduate School of Science, University of Tokyo, Tokyo, Japan
| | - S. Matsuda
- Institute for Space-Earth Environmental Research, Nagoya University, Nagoya, Japan
| | - T. Segawa
- Institute for Space-Earth Environmental Research, Nagoya University, Nagoya, Japan
| | - K. Seki
- Department of Earth and Planetary Science, Graduate School of Science, University of Tokyo, Tokyo, Japan
| | - M. Shoji
- Institute for Space-Earth Environmental Research, Nagoya University, Nagoya, Japan
| | - S. W. Y. Tam
- Institute of Space and Plasma Sciences, National Cheng Kung University, Tainan, Taiwan
| | - N. Umemura
- Institute for Space-Earth Environmental Research, Nagoya University, Nagoya, Japan
| | - B.-J. Wang
- Academia Sinica Institute of Astronomy and Astrophysics, Taipei, Taiwan
- Graduate Institute of Space Science, National Central University, Taoyuan, Taiwan
| | - S.-Y. Wang
- Academia Sinica Institute of Astronomy and Astrophysics, Taipei, Taiwan
| | - R. Redmon
- National Centers for Environmental Information, National Oceanic and Atmospheric Administration, Boulder, CO USA
| | - J. V. Rodriguez
- National Centers for Environmental Information, National Oceanic and Atmospheric Administration, Boulder, CO USA
- Cooperative Institute for Research in Environmental Sciences (CIRES) at University of Colorado at Boulder, Boulder, CO USA
| | - H. J. Singer
- Space Weather Prediction Center, National Oceanic and Atmospheric Administration, Boulder, CO USA
| | - J. Vandegriff
- The Johns Hopkins University Applied Physics Laboratory, Laurel, MD USA
| | - S. Abe
- International Center for Space Weather Science and Education, Kyushu University, Fukuoka, Japan
| | - M. Nose
- Institute for Space-Earth Environmental Research, Nagoya University, Nagoya, Japan
- World Data Center for Geomagnetism, Kyoto Data Analysis Center for Geomagnetism and Space Magnetism, Kyoto University, Kyoto, Japan
| | - A. Shinbori
- Institute for Space-Earth Environmental Research, Nagoya University, Nagoya, Japan
| | - Y.-M. Tanaka
- National Institute of Polar Research, Tokyo, Japan
| | - S. UeNo
- Hida Observatory, Kyoto University, Kyoto, Japan
| | - L. Andersson
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, CO USA
| | - P. Dunn
- Space Sciences Laboratory, University of California, Berkeley, USA
| | - C. Fowler
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, CO USA
| | - J. S. Halekas
- Department of Physics and Astronomy, University of Iowa, Iowa City, IA USA
| | - T. Hara
- Space Sciences Laboratory, University of California, Berkeley, USA
| | - Y. Harada
- Department of Geophysics, Kyoto University, Kyoto, Japan
| | - C. O. Lee
- Space Sciences Laboratory, University of California, Berkeley, USA
| | - R. Lillis
- Space Sciences Laboratory, University of California, Berkeley, USA
| | - D. L. Mitchell
- Space Sciences Laboratory, University of California, Berkeley, USA
| | - M. R. Argall
- Physics Department and Space Science Center, University of New Hampshire, Durham, NH USA
| | - K. Bromund
- NASA Goddard Space Flight Center, Greenbelt, MD USA
| | - J. L. Burch
- Southwest Research Institute, San Antonio, TX USA
| | - I. J. Cohen
- The Johns Hopkins University Applied Physics Laboratory, Laurel, MD USA
| | - M. Galloy
- National Center for Atmospheric Research, Boulder, CO USA
| | - B. Giles
- NASA Goddard Space Flight Center, Greenbelt, MD USA
| | - A. N. Jaynes
- Department of Physics and Astronomy, University of Iowa, Iowa City, IA USA
| | - O. Le Contel
- Laboratoire de Physique des Plasmas, CNRS/Ecole Polytechnique/Sorbonne Université/Univ. Paris Sud/Observatoire de Paris, Paris, France
| | - M. Oka
- Space Sciences Laboratory, University of California, Berkeley, USA
| | - T. D. Phan
- Space Sciences Laboratory, University of California, Berkeley, USA
| | - B. M. Walsh
- Center for Space Physics, Department of Mechanical Engineering, Boston University, Boston, MA USA
| | - J. Westlake
- The Johns Hopkins University Applied Physics Laboratory, Laurel, MD USA
| | - F. D. Wilder
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, CO USA
| | - S. D. Bale
- Space Sciences Laboratory, University of California, Berkeley, USA
| | - R. Livi
- Space Sciences Laboratory, University of California, Berkeley, USA
| | - M. Pulupa
- Space Sciences Laboratory, University of California, Berkeley, USA
| | - P. Whittlesey
- Space Sciences Laboratory, University of California, Berkeley, USA
| | - A. DeWolfe
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, CO USA
| | - B. Harter
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, CO USA
| | - E. Lucas
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, CO USA
| | - U. Auster
- Institute for Geophysics and Extraterrestrial Physics, Technical University of Braunschweig, Braunschweig, Germany
| | - J. W. Bonnell
- Space Sciences Laboratory, University of California, Berkeley, USA
| | - C. M. Cully
- University of Calgary, Calgary, Ontario Canada
| | - E. Donovan
- University of Calgary, Calgary, Ontario Canada
| | - R. E. Ergun
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, CO USA
| | - H. U. Frey
- Space Sciences Laboratory, University of California, Berkeley, USA
| | - B. Jackel
- University of Calgary, Calgary, Ontario Canada
| | - A. Keiling
- Space Sciences Laboratory, University of California, Berkeley, USA
| | - H. Korth
- The Johns Hopkins University Applied Physics Laboratory, Laurel, MD USA
| | - J. P. McFadden
- Space Sciences Laboratory, University of California, Berkeley, USA
| | - Y. Nishimura
- Center for Space Physics and Department of Electrical and Computer Engineering, Boston University, Boston, MA USA
| | - F. Plaschke
- Space Research Institute, Austrian Academy of Sciences, Institute of Physics, University of Graz, Graz, Austria
| | - P. Robert
- Laboratoire de Physique des Plasmas, CNRS/Ecole Polytechnique/Sorbonne Université/Univ. Paris Sud/Observatoire de Paris, Paris, France
| | | | - J. M. Weygand
- Department of Earth, Planetary and Space Sciences, and Institute of Geophysics and Planetary Physics, University of California, Los Angeles, USA
| | - R. M. Candey
- NASA Goddard Space Flight Center, Greenbelt, MD USA
| | - R. C. Johnson
- ADNET Systems Inc., NASA Goddard Space Flight Center, Greenbelt, MD USA
| | - T. Kovalick
- ADNET Systems Inc., NASA Goddard Space Flight Center, Greenbelt, MD USA
| | - M. H. Liu
- ADNET Systems Inc., NASA Goddard Space Flight Center, Greenbelt, MD USA
| | | | - A. Breneman
- University of Minnesota, Minneapolis, MN USA
| | - K. Kersten
- University of Minnesota, Minneapolis, MN USA
| | - P. Schroeder
- Space Sciences Laboratory, University of California, Berkeley, USA
| |
Collapse
|
7
|
Girazian Z, Mahaffy P, Lillis RJ, Benna M, Elrod M, Fowler CM, Mitchell DL. Ion Densities in the Nightside Ionosphere of Mars: Effects of Electron Impact Ionization. Geophys Res Lett 2017; 44:11248-11256. [PMID: 30034041 PMCID: PMC6052459 DOI: 10.1002/2017gl075431] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
We use observations from the Mars Atmosphere and Volatile EvolutioN(MAVEN) mission to show how superthermal electron fluxes and crustal magnetic fields affect ion densities in the nightside ionosphere of Mars. We find that, due to electron impact ionization, high electron fluxes significantly increase the CO2+ , O+, and O2+ densities below 200 km, but only modestly increase the NO+ density. High electron fluxes also produce distinct peaks in the CO2+ , O+, and O2+ altitude profiles. We also find that superthermal electron fluxes are smaller near strong crustal magnetic fields. Consequently, nightside ion densities are also smaller near strong crustal fields because they decay without being replenished by electron impact ionization. Furthermore, the NO+/O2+ ratio is enhanced near strong crustal fields because, in the absence of electron impact ionization, O2+ is converted into NO+ and not replenished. Our results show that electron impact ionization is a significant source of CO2+ , O+, and O2+ in the nightside ionosphere of Mars.
Collapse
Affiliation(s)
- Z. Girazian
- NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
| | - P. Mahaffy
- NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
| | - R. J. Lillis
- Space Sciences Laboratory, University of California, Berkeley, California, USA
| | - M. Benna
- NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
- CRESST, University of Maryland Baltimore County, Baltimore, Maryland, USA
| | - M. Elrod
- NASA Goddard Space Flight Center, Greenbelt, Maryland, USA
- CRESST, University of Maryland, College Park, Maryland, USA
| | - C. M. Fowler
- Laboratory for Atmospheric and Space Physics, University of Colorado Boulder, Boulder, Colorado, USA
| | - D. L. Mitchell
- Space Sciences Laboratory, University of California, Berkeley, California, USA
| |
Collapse
|
8
|
Schneider NM, Deighan JI, Jain SK, Stiepen A, Stewart AIF, Larson D, Mitchell DL, Mazelle C, Lee CO, Lillis RJ, Evans JS, Brain D, Stevens MH, McClintock WE, Chaffin MS, Crismani M, Holsclaw GM, Lefevre F, Lo DY, Clarke JT, Montmessin F, Jakosky BM. Discovery of diffuse aurora on Mars. Science 2015; 350:aad0313. [PMID: 26542577 DOI: 10.1126/science.aad0313] [Citation(s) in RCA: 81] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Affiliation(s)
- N. M. Schneider
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, Boulder, CO 80303, USA
| | - J. I. Deighan
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, Boulder, CO 80303, USA
| | - S. K. Jain
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, Boulder, CO 80303, USA
| | - A. Stiepen
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, Boulder, CO 80303, USA
| | - A. I. F. Stewart
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, Boulder, CO 80303, USA
| | - D. Larson
- Space Sciences Lab, University of California, Berkeley, Berkeley, CA 94720, USA
| | - D. L. Mitchell
- Space Sciences Lab, University of California, Berkeley, Berkeley, CA 94720, USA
| | - C. Mazelle
- Institut de Recherche en Astrophysique et Planétologie (IRAP), CNRS, Toulouse, France
- University Paul Sabatier, IRAP, CNRS, Toulouse, France
| | - C. O. Lee
- Space Sciences Lab, University of California, Berkeley, Berkeley, CA 94720, USA
| | - R. J. Lillis
- Space Sciences Lab, University of California, Berkeley, Berkeley, CA 94720, USA
| | - J. S. Evans
- Computational Physics, Inc, Springfield, VA 22151, USA
| | - D. Brain
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, Boulder, CO 80303, USA
| | - M. H. Stevens
- Space Science Division, Naval Research Laboratory, Washington, DC 20375, USA
| | - W. E. McClintock
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, Boulder, CO 80303, USA
| | - M. S. Chaffin
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, Boulder, CO 80303, USA
| | - M. Crismani
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, Boulder, CO 80303, USA
| | - G. M. Holsclaw
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, Boulder, CO 80303, USA
| | - F. Lefevre
- Laboratoire Atmosphères, Milieux, Observations Spatiales, Institut Pierre Simon Laplace, Guyancourt, France
| | - D. Y. Lo
- Lunar and Planetary Laboratory, University of Arizona, Tucson, AZ 85721, USA
| | - J. T. Clarke
- Center for Space Physics, Boston University, Boston, MA 02215, USA
| | - F. Montmessin
- Lunar and Planetary Laboratory, University of Arizona, Tucson, AZ 85721, USA
| | - B. M. Jakosky
- Laboratory for Atmospheric and Space Physics, University of Colorado, Boulder, Boulder, CO 80303, USA
| |
Collapse
|
9
|
Mitchell DL, Mishra S, Lawson RP. Representing the ice fall speed in climate models: Results from Tropical Composition, Cloud and Climate Coupling (TC4) and the Indirect and Semi-Direct Aerosol Campaign (ISDAC). ACTA ACUST UNITED AC 2011. [DOI: 10.1029/2010jd015433] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
|
10
|
Gettelman A, Liu X, Ghan SJ, Morrison H, Park S, Conley AJ, Klein SA, Boyle J, Mitchell DL, Li JLF. Global simulations of ice nucleation and ice supersaturation with an improved cloud scheme in the Community Atmosphere Model. ACTA ACUST UNITED AC 2010. [DOI: 10.1029/2009jd013797] [Citation(s) in RCA: 329] [Impact Index Per Article: 23.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
|
11
|
McAlpine CA, Rhodes JR, Bowen ME, Lunney D, Callaghan JG, Mitchell DL, Possingham HP. Can multiscale models of species’ distribution be generalized from region to region? A case study of the koala. J Appl Ecol 2008. [DOI: 10.1111/j.1365-2664.2007.01431.x] [Citation(s) in RCA: 96] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
|
12
|
Brain DA, Lillis RJ, Mitchell DL, Halekas JS, Lin RP. Electron pitch angle distributions as indicators of magnetic field topology near Mars. ACTA ACUST UNITED AC 2007. [DOI: 10.1029/2007ja012435] [Citation(s) in RCA: 133] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- D. A. Brain
- Space Sciences Laboratory; University of California; Berkeley California USA
| | - R. J. Lillis
- Space Sciences Laboratory; University of California; Berkeley California USA
| | - D. L. Mitchell
- Space Sciences Laboratory; University of California; Berkeley California USA
| | - J. S. Halekas
- Space Sciences Laboratory; University of California; Berkeley California USA
| | - R. P. Lin
- Space Sciences Laboratory; University of California; Berkeley California USA
| |
Collapse
|
13
|
Mitchell DL, Lillis RJ, Lin RP, Connerney JEP, Acuña MH. A global map of Mars' crustal magnetic field based on electron reflectometry. ACTA ACUST UNITED AC 2007. [DOI: 10.1029/2005je002564] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
|
14
|
Connerney JEP, Acuña MH, Ness NF, Kletetschka G, Mitchell DL, Lin RP, Reme H. Tectonic implications of Mars crustal magnetism. Proc Natl Acad Sci U S A 2005; 102:14970-5. [PMID: 16217034 PMCID: PMC1250232 DOI: 10.1073/pnas.0507469102] [Citation(s) in RCA: 214] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Mars currently has no global magnetic field of internal origin but must have had one in the past, when the crust acquired intense magnetization, presumably by cooling in the presence of an Earth-like magnetic field (thermoremanent magnetization). A new map of the magnetic field of Mars, compiled by using measurements acquired at an approximately 400-km mapping altitude by the Mars Global Surveyor spacecraft, is presented here. The increased spatial resolution and sensitivity of this map provide new insight into the origin and evolution of the Mars crust. Variations in the crustal magnetic field appear in association with major faults, some previously identified in imagery and topography (Cerberus Rupes and Valles Marineris). Two parallel great faults are identified in Terra Meridiani by offset magnetic field contours. They appear similar to transform faults that occur in oceanic crust on Earth, and support the notion that the Mars crust formed during an early era of plate tectonics.
Collapse
Affiliation(s)
- J E P Connerney
- National Aeronautics and Space Administration Goddard Space Flight Center, Greenbelt, MD 20771, USA.
| | | | | | | | | | | | | |
Collapse
|
15
|
Rädel G, Stubenrauch CJ, Holz R, Mitchell DL. Retrieval of effective ice crystal size in the infrared: Sensitivity study and global measurements from TIROS-N Operational Vertical Sounder. ACTA ACUST UNITED AC 2003. [DOI: 10.1029/2002jd002801] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- G. Rädel
- Laboratoire de Météorologie Dynamique; Ecole Polytechnique; Palaiseau France
| | - C. J. Stubenrauch
- Laboratoire de Météorologie Dynamique; Ecole Polytechnique; Palaiseau France
| | - R. Holz
- Laboratoire de Météorologie Dynamique; Ecole Polytechnique; Palaiseau France
| | | |
Collapse
|
16
|
Chouinard N, Therrien JP, Mitchell DL, Robert M, Drouin R, Rouabhia M. Repeated exposures of human skin equivalent to low doses of ultraviolet-B radiation lead to changes in cellular functions and accumulation of cyclobutane pyrimidine dimers. Biochem Cell Biol 2002; 79:507-15. [PMID: 11527220] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/21/2023] Open
Abstract
Chronic exposure to sunlight may induce skin damage such as photoaging and photocarcinogenesis. These harmful effects are mostly caused by ultraviolet-B (UVB) rays. Yet, less is known about the contribution of low UVB doses to skin damage. The aim of this study was to determine the tissue changes induced by repeated exposure to a suberythemal dose of UVB radiation. Human keratinocytes in monolayer cultures and in skin equivalent were irradiated daily with 8 mJ/cm2 of UVB. Then structural, ultrastructural, and biochemical alterations were evaluated. The results show that exposure to UVB led to a generalized destabilization of the epidermis structure. In irradiated skin equivalents, keratinocytes displayed differentiated morphology and a reduced capacity to proliferate. Ultrastructural analysis revealed, not only unusual aggregation of intermediate filaments, but also disorganized desmosomes and larger mitochondria in basal cells. UVB irradiation also induced the secretion of metalloproteinase-9, which may be responsible for degradation of type IV collagen at the basement membrane. DNA damage analysis showed that both single and repeated exposure to UVB led to formation of (6-4) photoproducts and cyclobutane pyrimidine dimers. Although the (6-4) photoproducts were repaired within 24 h after irradiation, cyclobutane pyrimidine dimers accumulated over the course of the experiment. These studies demonstrate that, even at a suberythemal dose, repeated exposure to UVB causes significant functional and molecular damage to keratinocytes, which might eventually predispose to skin cancer.
Collapse
Affiliation(s)
- N Chouinard
- Unité de Biotechnologie, Institut des Biomatériaux de Quebec, Centre Hospitalier Universitaire de Quebec, QC, Canada
| | | | | | | | | | | |
Collapse
|
17
|
Halekas JS, Mitchell DL, Lin RP, Frey S, Hood LL, Acuña MH, Binder AB. Mapping of crustal magnetic anomalies on the lunar near side by the Lunar Prospector electron reflectometer. ACTA ACUST UNITED AC 2001. [DOI: 10.1029/2000je001380] [Citation(s) in RCA: 114] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
|
18
|
Hood LL, Zakharian A, Halekas J, Mitchell DL, Lin RP, Acuña MH, Binder AB. Initial mapping and interpretation of lunar crustal magnetic anomalies using Lunar Prospector magnetometer data. ACTA ACUST UNITED AC 2001. [DOI: 10.1029/2000je001366] [Citation(s) in RCA: 157] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
|
19
|
Mitchell DL, Lin RP, Mazelle C, Rème H, Cloutier PA, Connerney JEP, Acuña MH, Ness NF. Probing Mars' crustal magnetic field and ionosphere with the MGS Electron Reflectometer. ACTA ACUST UNITED AC 2001. [DOI: 10.1029/2000je001435] [Citation(s) in RCA: 275] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
|
20
|
Mitchell DL, Volkmer B, Breitbart EW, Byrom M, Lowery MG, Greinert R. Identification of a non-dividing subpopulation of mouse and human epidermal cells exhibiting high levels of persistent ultraviolet photodamage. J Invest Dermatol 2001; 117:590-5. [PMID: 11564164 DOI: 10.1046/j.0022-202x.2001.01442.x] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
The distribution and persistence of cyclobutane pyrimidine dimers were investigated in mouse skin after chronic and acute exposures to ultraviolet-B radiation. We found that DNA damage accumulated in response to chronic irradiation and persisted in a unique set of epidermal cells located at the basal layer. Treatment with a tumor promoter caused the heavily damaged epidermal cells to divide and p53-immunopositive clusters to form within 24 h suggesting that these cells may be progenitors of the mutant p53 clusters associated with actinic keratoses and squamous cell carcinomas. In contrast to low fluence chronic irradiation, daily treatment with a higher fluence of ultraviolet-B produced extensive hyperplasia and considerably reduced penetration of photodamage. Exposure of chronically irradiated skin to an acute "sunburn dose" of ultraviolet-B also produced significant epidermal hyperplasia and resulted in complete loss of heavily damaged basal cells within 4 d postirradiation. The occurrence and distribution of cyclobutane dimers in human skin correlated well with putative sunlight exposure and resembled that observed in ultraviolet-B-irradiated mice. Heavily damaged basal cells were observed at various sites, including those receiving sporadic sunlight exposure, suggesting that these cells may play an important role in carcinoma formation in humans.
Collapse
Affiliation(s)
- D L Mitchell
- Department of Carcinogenesis, The University of Texas M.D. Anderson Cancer Center, Science Park/Research Division, Smithville, Texas 78957, USA
| | | | | | | | | | | |
Collapse
|
21
|
Walter RB, Sung HM, Obermoeller RD, Mitchell DL, Intano GW, Walter CA. Relative base excision repair in Xiphophorus fish tissue extracts. Mar Biotechnol (NY) 2001; 3:S50-S60. [PMID: 14961300 DOI: 10.1007/s10126-001-0027-0] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
To begin characterizing DNA repair capability among Xiphophorus species, we adapted oligonucleotide-based DNA repair assays to extracts of fish tissues. Here, we report the initial results of relative base excision repair (BER) capability among 3 inbred Xiphophorus fish lines representing 2 species (X. maculatus and X. couchianus), and interspecies hybrid F(1) animals produced by crossing them. Overall, data from uracil- N-glycosylase (UNG)-initiated BER assay (UNG-BER) indicate that brain tissue extracts generally possess higher BER activity than do gill and liver extracts. UNG-BER activities in gill and liver extracts were similar. The BER activity in the tissues of F(1) interspecies hybrids followed the activity pattern of the X. couchianus parent in gill and liver extracts, was similar to the X. maculatus parent in brain extracts, but exhibited a reduced repair capacity in gill tissue extracts compared with either parent. We discuss the use of oligonucleotide-based DNA repair assays to elucidate the role that inheritance of DNA repair potential may play in susceptibility to disease and tumorigenesis in the intact organism.
Collapse
Affiliation(s)
- R B Walter
- Department of Chemistry and Biochemistry, Southwest Texas State University, 419 Centennial Hall, 601 University Drive, San Marcos, TX 78666-4616, USA.
| | | | | | | | | | | |
Collapse
|
22
|
Mitchell DL. Dental implantology at the University of Oklahoma College of Dentistry. J Okla Dent Assoc 2001; 90:22-5. [PMID: 11314312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/19/2023]
Affiliation(s)
- D L Mitchell
- Department of Implantology, OU College of Dentistry, USA
| |
Collapse
|
23
|
Abstract
Nurses working with thought-disordered clients in inpatient psychiatric settings may find that much of their role is defined by the administration and monitoring of antipsychotic medications. Therefore, a challenge for these nurses can be to find other nursing interventions for these clients that are effective, efficient, and clearly and uniquely within the scope of nursing. In response to this challenge, this article presents the use of solution-focused therapy (SFT) to help thought-disordered clients better cope with some of their negative experiences and symptomatology. The article provides an overview of SFT, with a focus on how these techniques might be used on an inpatient psychiatry setting with clients experiencing thought disorders. The authors include three case studies demonstrating the use of SFT with clients experiencing thought disorders, and conclude with some of the lessons they have learned using SFT techniques with these kinds of clients in inpatient psychiatric settings.
Collapse
Affiliation(s)
- B F Hagen
- School of Health Sciences, University of Lethbridge, Lethbridge, and Rockyview Hospital, Calgary, Alberta, Canada
| | | |
Collapse
|
24
|
Mitchell DL, Byrom M, Chiarello S, Lowery MG. Effects of chronic exposure to ultraviolet B radiation on DNA repair in the dermis and epidermis of the hairless mouse. J Invest Dermatol 2001; 116:209-15. [PMID: 11179995 DOI: 10.1046/j.1523-1747.2001.01192.x] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
It has previously been shown that chronic exposure to low fluences of ultraviolet B radiation reduced DNA repair capacity in mouse skin. In this study we now extend this to examine the concentration dependence and tissue dependence of this phenomenon. We found that (6-4) photoproducts were repaired considerably faster than cyclobutane dimers and that the kinetics for photoproduct removal were comparable in the dermis and epidermis. Chronic ultraviolet B irradiation significantly reduced the initial rate and extent of DNA repair. After low daily doses of ultraviolet B (6-4) photoproduct repair was most affected and after high daily doses the repair of both cyclobutane and (6-4) dimers was reduced. Whereas cyclobutane dimer repair was most affected in the dermis, reduced (6-4) photoproduct repair was observed in both tissues. The deleterious effects of chronic ultraviolet exposure were sustained for a considerable time after the chronic treatment ended.
Collapse
Affiliation(s)
- D L Mitchell
- The University of Texas M.D. Anderson Cancer Center, Department of Carcinogenesis, Science Park/Research Division, PO Box 239, Smithville, Texas 78957, USA.
| | | | | | | |
Collapse
|
25
|
Mitchell DL, Byrom M, Chiarello S, Lowery MG. Attenuation of DNA damage in the dermis and epidermis of the albino hairless mouse by chronic exposure to ultraviolet-A and -B radiation. Photochem Photobiol 2001; 73:83-9. [PMID: 11202371 DOI: 10.1562/0031-8655(2001)073<0083:aoddit>2.0.co;2] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
Mammalian skin is vulnerable to the photocarcinogenic and photoaging effects of solar UV radiation and defends itself using a variety of photoprotective responses including epidermal thickening, tanning and the induction of repair and antiradical systems. We treated Skh-1 albino hairless mice for 60 days with ultraviolet-A (UVA) or ultraviolet-B (UVB) radiation and measured the frequency of cyclobutane pyrimidine dimers and pyrimidine(6-4)pyrimidone photoproducts induced by a single acute sunburn dose of UVB at different stages of the chronic treatment. We found that both UVA and UVB exposure produced a photoprotective response in the dermis and epidermis and that the degree of photoproduct attenuation was dependent on dose, wavelength and the type of damage induced. Although epidermal thickening was important, our data suggest that UV protective compounds other than melanin may be involved in mitigating the damaging effects of sunlight in the skin.
Collapse
Affiliation(s)
- D L Mitchell
- Department of Carcinogenesis, University of Texas M.D. Anderson Cancer Center, Science Park/Research Division, P.O. Box 389, Smithvilie, TX 78957, USA.
| | | | | | | |
Collapse
|
26
|
Abstract
The relationship between purified transcription factor p50 binding and ultraviolet light-induced DNA damage formation in the NF-kappa B promoter element was investigated. The effect of bound transcription factor on cyclobutane dimer formation was quantified using Maxam-Gilbert analysis of irradiated substrate digested with T4 phage endonuclease V. Two methods were employed for cleaving (6-4) photoproducts. Sites of (6-4) photoproducts cleaved by piperidine showed a general suppression in the presence of bound p50 protein similar to that observed for cyclobutane dimers. In contrast to piperidine, digestion with ultraviolet damage endonuclease (UVDE) from Saccharomyces pombe subsequent to cyclobutane dimer reversal by photolyase displayed a broader spectrum of damaged sites. Whereas some of these sites were suppressed by bound p50 protein, some remained unaffected and one site showed increased (6-4) photoproduct induction. These data illustrate the advantage of UVDE over piperidine for studying (6-4) photoproducts at the sequence level and suggest that this approach may be useful for footprinting transcription factor binding in other promoters.
Collapse
Affiliation(s)
- R Ghosh
- Department of Cancer Causation and Prevention, AMC Cancer Research Center, Lakewood, CO, USA
| | | | | |
Collapse
|
27
|
Abstract
STATEMENT OF PROBLEM The placement and restoration of dental implants require the use of numerous reusable instruments and components. The adequate sterilization of reusable instruments and components is essential to prevent cross contamination between patients. Sterilization usually is accomplished with single-use sterilization envelopes. A reusable sterilization vehicle would reduce costs as well as the waste generated in patient care. PURPOSE This study was designed to determine the efficacy of a 10-cc Pyrex test tube as a sterilization vehicle for reusable dental implant instruments and components. MATERIAL AND METHODS In this study, a reusable dental implant component was placed in a Pyrex test tube, along with a biologic test strip. A control biologic test strip was kept for each test tube. The test tube was closed with a cotton roll folded in half and placed in the opening. Twenty test tubes were prepared. five sets of 4 test tubes were placed in an autoclave in different locations with varying orientations. The autoclave completed a standard sterilization cycle. RESULTS The biological monitoring service indicated that the biologic test strips in 100% of the test tubes were sterile, whereas the control strips were 100% nonsterile. CONCLUSION A Pyrex test tube sealed with a cotton roll can serve as a sterilization vehicle for reusable dental implant instruments and components.
Collapse
Affiliation(s)
- J R Cain
- College of Dentistry, University of Oklahoma, Oklahoma City 73190, Okla., USA.
| | | | | |
Collapse
|
28
|
Greinert R, Boguhn O, Harder D, Breitbart EW, Mitchell DL, Volkmer B. The dose dependence of cyclobutane dimer induction and repair in UVB-irradiated human keratinocytes. Photochem Photobiol 2000; 72:701-8. [PMID: 11107858 DOI: 10.1562/0031-8655(2000)072<0701:tddocd>2.0.co;2] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
UVB and UVA components of the solar spectrum or from artificial UV-sources might be important etiological factors for the induction and development of skin cancer. In particular, deficiencies in the capacity to repair UV-induced DNA-lesions have been linked to this phenomenon. However, until now only limited data are available on the biological and physical parameters governing repair capacity. We have, therefore, developed a flowcytometric assay using fluorescence-labeled monoclonal antibodies to study the dose-dependence of induction and repair of UVB-induced cyclobutane pyrimidine dimers in a spontaneously immortalized keratinocytic cell line (HaCaT). Our results show that the kinetics of recognition and incision of UVB-induced DNA lesions slows down by a factor of about 3 in a dose range of 100-800 J m-2. Furthermore, a thorough analysis of repair kinetics indicates that this reduction in repair capacity might not be dependent on saturation of enzymatic repair capacity (Michaelis-Menten) but may be caused by a UV-induced impairment of enzymes involved in DNA repair. Because this effect is evident in vitro at doses comparable to the minimal erythemal dose in vivo, our results might have significant impact on risk assessment for UV-induced carcinogenesis.
Collapse
Affiliation(s)
- R Greinert
- Dermatologisches Zentrum Buxtehude, Krankenhaus Buxtehude, Germany.
| | | | | | | | | | | |
Collapse
|
29
|
Bissonauth V, Drouin R, Mitchell DL, Rhainds M, Claveau J, Rouabhia M. The efficacy of a broad-spectrum sunscreen to protect engineered human skin from tissue and DNA damage induced by solar ultraviolet exposure. Clin Cancer Res 2000; 6:4128-35. [PMID: 11051266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/18/2023]
Abstract
Sunscreens are known to protect against sunlight-induced erythema and sunburn, but their efficiency at protecting against skin cancer is still a matter of debate. Specifically, the capacity of sunscreens to prevent or reduce tissue and DNA damage has not been thoroughly investigated. The present study was undertaken to assess the ability of a chemical broad-spectrum sunscreen to protect human skin against tissue and DNA damage after solar UV radiation. Engineered human skin was generated and either treated or not with a broad-spectrum SPF 30 sunscreen and exposed to increasing doses of simulated sunlight (SSL). Immediately after irradiation, histological, immunohistochemical, and molecular quantitative analyses were performed. The unprotected irradiated engineered human skin showed significant epidermal disorganization accompanied by a complete absence of laminin deposition. The sunscreen prevented SSL-induced epidermal damage at low doses and allowed laminin deposition at almost all SSL doses tested. The frequencies of cyclobutane pyrimidine dimers, pyrimidine (6-4) pyrimidone photoproducts, and photooxidative lesions measured by alkaline gel electrophoresis and radioimmunoassay were significantly reduced by the sunscreen. Thus, tissue and DNA damage may provide excellent quantitative end points for assessing the photoprotective efficacy of sunscreens.
Collapse
Affiliation(s)
- V Bissonauth
- Department of Medical Biology, Faculty of Medicine, Laval University, Centre de Recherche, Hôpital Saint-François d'Assise, CHUQ, Quebec, Canada
| | | | | | | | | | | |
Collapse
|
30
|
Fidantsef AL, Mitchell DL, Britt AB. The Arabidopsis UVH1 gene is a homolog of the yeast repair endonuclease RAD1. Plant Physiol 2000; 124:579-86. [PMID: 11027708 PMCID: PMC59164 DOI: 10.1104/pp.124.2.579] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2000] [Accepted: 06/20/2000] [Indexed: 05/21/2023]
Abstract
Ultraviolet radiation induces DNA damage products, largely in the form of pyrimidine dimers, that are both toxic and mutagenic. In most organisms, including Arabidopsis, these lesions are repaired both through a dimer-specific photoreactivation mechanism and through a less efficient light-independent mechanism. Several mutants defective in this "dark repair" pathway have been previously described. The mechanism of this repair has not been elucidated, but is thought to be homologous to the nucleotide excision repair mechanisms found in other eukaryotes. Here we report the complementation of the Arabidopsis uvh1 dark repair mutant with the Arabidopsis homolog of the yeast nucleotide excision repair gene RAD1, which encodes one of the subunits of the 5'-repair endonuclease. The uvh1-2 mutant allele carries a glycine-->aspartate amino acid change that has been previously identified to produce a null allele of RAD1 in yeast. Although Arabidopsis homologs of genes involved in nucleotide excision repair are readily identified by searching the genomic database, it has not been established that these homologs are actually required for dark repair in plants. The complementation of the Arabidopsis uvh1 mutation with the Arabidopsis RAD1 homolog clearly demonstrates that the mechanism of nucleotide excision repair is conserved among the plant, animal, and fungal kingdoms.
Collapse
Affiliation(s)
- A L Fidantsef
- Section of Plant Biology, University of California, Davis, California 95616, USA
| | | | | |
Collapse
|
31
|
Brown DB, Peritz AE, Mitchell DL, Chiarello S, Uitto J, Gasparro FP. Common fluorescent sunlamps are an inappropriate substitute for sunlight. Photochem Photobiol 2000; 72:340-4. [PMID: 10989604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/17/2023]
Abstract
Fluorescent sunlamps are commonly employed as convenient sources in photobiology experiments. The ability of Kodacel to filter photobiologically irrelevant UVC wavelengths has been described. Yet there still remains a major unaddressed issue--the over representation of UVB in the output. The shortest terrestrial solar wavelengths reaching the surface are approximately 295 nm with the 295-320 nm range comprising approximately 4% of the solar UV irradiance. In Kodacel-filtered sunlamps, 47% of the UV output falls in this range. Consequently, in studies designed to understand skin photobiology after solar exposure, the use of these unfiltered sunlamps may result in misleading, or even incorrect conclusions. To demonstrate the importance of using an accurate representation of the UV portion of sunlight, the ability of different ultraviolet radiation (UVR) sources to induce the expression of a reporter gene was assayed. Unfiltered fluorescent sunlamps (FS lamps) induce optimal chloramphenicol acetyltransferase (CAT) activity at apparently low doses (10-20 J/cm2). Filtering the FS lamps with Kodacel raised the delivered dose for optimal CAT activity to 50-60 mJ/cm2. With the more solar-like UVA-340 lamps somewhat lower levels of CAT activities were induced even though the apparent delivered doses were significantly greater than for either the FS or Kodacel-filtered sunlamp (KFS lamps). When DNA from parallel-treated cells was analyzed for photoproduct formation by a radioimmuneassay, it was shown that the induction of CAT activity correlated with the level of induced photoproduct formation regardless of the source employed.
Collapse
Affiliation(s)
- D B Brown
- Department of Dermatology and Cutaneous Biology, Thomas Jefferson University, Philadelphia, PA 19107, USA
| | | | | | | | | | | |
Collapse
|
32
|
Abstract
The genus Xiphophorus is an important model for investigating the etiology and genetics of sunlight-induced melanoma as well as other cancers. We used immunological techniques to determine the induction, distribution and repair of cyclobutane pyrimidine dimers (CPD) and pyrimidine(6-4)pyrimidone dimers ([6-4]PD) in different tissues of Xiphophorus signum exposed to ultraviolet-B light. We found that the (6-4)PD was induced at 5 to 10-fold lower frequency than the CPD and that scalation provided considerable photoprotection against both photoproducts. Photoenzymatic repair (PER) was very efficient in X. signum with most of the lesions removed within 20 min; PER of CPD occurred at about twice the rate of (6-4)PD. Nucleotide excision repair (NER) was much less efficient than PER and the rates of CPD and (6-4)PD removal were comparable. PER was more efficient in the caudal fin compared to the lateral epidermis; the opposite was true for NER. Although the initial rate of CPD excision was five-fold faster in the lateral epidermis compared to the caudal fin a considerable amount of residual damage remained in both tissues. The diverse photochemical and photobiological responses observed in X. signum suggest that heritable traits governing deoxyribonucleic acid damage induction and repair may be involved in the susceptibility of other Xiphophorus species to melanomagenesis.
Collapse
Affiliation(s)
- J A Meador
- University of Texas M.D. Anderson Cancer Center, Department of Carcinogenesis, Smithville, TX, USA
| | | | | |
Collapse
|
33
|
Kristjánsson JE, Edwards JM, Mitchell DL. Impact of a new scheme for optical properties of ice crystals on climates of two GCMs. ACTA ACUST UNITED AC 2000. [DOI: 10.1029/2000jd900015] [Citation(s) in RCA: 99] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
|
34
|
Liu Z, Hossain GS, Islas-Osuna MA, Mitchell DL, Mount DW. Repair of UV damage in plants by nucleotide excision repair: Arabidopsis UVH1 DNA repair gene is a homolog of Saccharomyces cerevisiae Rad1. Plant J 2000; 21:519-528. [PMID: 10758502 DOI: 10.1046/j.1365-313x.2000.00707.x] [Citation(s) in RCA: 65] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
To analyze plant mechanisms for resistance to UV radiation, mutants of Arabidopsis that are hypersensitive to UV radiation (designated uvh and uvr) have been isolated. UVR2 and UVR3 products were previously identified as photolyases that remove UV-induced pyrimidine dimers in the presence of visible light. Plants also remove dimers in the absence of light by an as yet unidentified dark repair mechanism and uvh1 mutants are defective in this mechanism. The UVH1 locus was mapped to chromosome 5 and the position of the UVH1 gene was further delineated by Agrobacterium-mediated transformation of the uvh1-1 mutant with cosmids from this location. Cosmid NC23 complemented the UV hypersensitive phenotype and restored dimer removal in the uvh1-1 mutant. The cosmid encodes a protein similar to the S. cerevisiae RAD1 and human XPF products, components of an endonuclease that excises dimers by nucleotide excision repair (NER). The uvh1-1 mutation creates a G to A transition in intron 5 of this gene, resulting in a new 3' splice site and introducing an in-frame termination codon. These results provide evidence that the Arabidopsis UVH1/AtRAD1 product is a subunit of a repair endonuclease. The previous discovery in Lilium longiflorum of a homolog of human ERCC1 protein that comprises the second subunit of the repair endonuclease provides additional evidence for the existence of the repair endonuclease in plants. The UVH1 gene is strongly expressed in flower tissue and also in other tissues, suggesting that the repair endonuclease is widely utilized for repair of DNA damage in plant tissues.
Collapse
Affiliation(s)
- Z Liu
- Department of Molecular and Cellular Biology and Genetics Graduate Program, University of Arizona, Tucson, Arizona 85721, USA
| | | | | | | | | |
Collapse
|
35
|
Abstract
The relative induction of cyclobutane pyrimidine dimers (CPD) and pyrimidine (6-4)pyrimidone photoproducts ([6-4]PD) was quantified in the duplex homopolymers polydeoxyadenosine:polydeoxythymidine, polydeoxyguanosine:polydeoxycytidine and polydeoxyguanosine:polydeoxy-5-methylcytidine irradiated with UVC or UVB radiation. Cytosine methylation significantly increased the yield of cytosine (6-4)PD after irradiation with UVC light and of cytosine CPD and (6-4)PD after irradiation with UVB light. The data suggest that CPD and (6-4)PD are preferentially induced at 5-methylcytosine bases in DNA of cells exposed to sunlight and comprise a major component of the mutation spectrum leading to the initiation of sunlight-induced skin cancer.
Collapse
Affiliation(s)
- D L Mitchell
- Department of Carcinogenesis, University of Texas M.D. Anderson Cancer Center, Smithville 78957, USA.
| |
Collapse
|
36
|
Abstract
The incidence of skin cancer is increasing rapidly, particularly in the Caucasian population. Epidemiological and experimental studies demonstrated that ultraviolet radiation (UVR) is the primary cause for the increasing incidence of skin cancer. It is well known that UV irradiation induces DNA damage. If the damage is not repaired or removed in time, it can lead to mutations and skin carcinogenesis. N-acetylcysteine (NAC) has been shown to be an effective protector against UVB-induced immunosuppression and to modulate the expression of some oncogenes and tumor suppressor genes. To test further the protective effect of NAC against UVR, we used both in vitro and in vivo models to investigate the effect of NAC on UVB-induced apoptosis and repair of DNA damage in human and mouse keratinocytes. Our data indicate that the intracellular glutathione level was increased after treatment with NAC at 10-20 mM but decreased with 40 mM NAC treatment due to the toxicity. At concentrations up to 20 mM NAC did not have a significant effect on UVB-induced apoptosis of cultured human keratinocytes. In addition, in an in vivo mouse model, topical application of NAC (3 mumol cm-2) that has been shown to inhibit UVB-induced immunosuppression did not have any effect on UVB-induced apoptosis and did not reduce the formation or enhance the repair of UVB-induced cyclobutane pyrimidine dimers and (6-4) photoproducts. Our results indicate that NAC is ineffective in preserving the genomic stability of keratinocytes against UVB irradiation.
Collapse
Affiliation(s)
- J A Bush
- Department of Medicine, Vancouver Hospital and Health Science Centre, University of British Columbia, Canada
| | | | | | | | | |
Collapse
|
37
|
Abstract
The molecular and biological consequences of UV-B radiation were investigated by studying five species of marine bacteria and one enteric bacterium. Laboratory cultures were exposed to an artificial UV-B source and subjected to various post-UV irradiation treatments. Significant differences in survival subsequent to UV-B radiation were observed among the isolates, as measured by culturable counts. UV-B-induced DNA photodamage was investigated by using a highly specific radioimmunoassay to measure cyclobutane pyrimidine dimers (CPDs). The CPDs determined following UV-B exposure were comparable for all of the organisms except Sphingomonas sp. strain RB2256, a facultatively oligotrophic ultramicrobacterium. This organism exhibited little DNA damage and a high level of UV-B resistance. Physiological conditioning by growth phase and starvation did not change the UV-B sensitivity of marine bacteria. The rates of photoreactivation following exposure to UV-B were investigated by using different light sources (UV-A and cool white light). The rates of photoreactivation were greatest during UV-A exposure, although diverse responses were observed. The differences in sensitivity to UV-B radiation between strains were reduced after photoreactivation. The survival and CPD data obtained for Vibrio natriegens when we used two UV-B exposure periods interrupted by a repair period (photoreactivation plus dark repair) suggested that photoadaptation could occur. Our results revealed that there are wide variations in marine bacteria in their responses to UV radiation and subsequent repair strategies, suggesting that UV-B radiation may affect the microbial community structure in surface water.
Collapse
Affiliation(s)
- F Joux
- Center for Environmental Diagnostics and Bioremediation, University of West Florida, Pensacola, Florida 32514, USA.
| | | | | | | |
Collapse
|
38
|
Affiliation(s)
- D L Mitchell
- Department of Carcinogenesis, M. D. Anderson Cancer Center, University of Texas, Smithville, USA
| |
Collapse
|
39
|
Abstract
Reactive oxygen species produced by endogenous metabolic activity and exposure to a multitude of exogenous agents impact cells in a variety of ways. The DNA base damage 8-oxodeoxyguanosine (8-oxodG) is a prominent indicator of oxidative stress and has been well-characterized as a premutagenic lesion in mammalian cells and putative initiator of the carcinogenic process. Commensurate with the recent interest in epigenetic pathways of cancer causation we investigated how 8-oxodG alters the interaction between cis elements located on gene promoters and sequence-specific DNA binding proteins associated with these promoters. Consensus binding sequences for the transcription factors AP-1, NF-kappaB and Sp1 were modified site-specifically at guanine residues and electrophoretic mobility shift assays were performed to assess DNA-protein interactions. Our results indicate that whereas a single 8-oxodG was sufficient to inhibit transcription factor binding to AP-1 and Sp1 sequences it had no effect on binding to NF-kappaB, regardless of its position. We conclude from these data that minor alterations in base composition at a crucial position within some, but not all, promoter elements have the ability to disrupt transcription factor binding. The lack of inhibition by damaged NF-kappaB sequences suggests that DNA-protein contact sites may not be as determinative for stable p50 binding to this promoter as other, as yet undefined, structural parameters.
Collapse
Affiliation(s)
- R Ghosh
- Department of Carcinogenesis, University of Texas M. D. Anderson Cancer Center, Science Park/Research Division, Smithville, TX 78957, USA
| | | |
Collapse
|
40
|
Mitchell DL. The top 10 ways to achieve fund-raising success in the 21st century. J Assoc Healthc Philanthr 1999:12-4. [PMID: 10387632] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/13/2023]
Affiliation(s)
- D L Mitchell
- Oregon Health Sciences University, Portland, USA
| |
Collapse
|
41
|
Mitchell DL, Greinert R, de Gruijl FR, Guikers KL, Breitbart EW, Byrom M, Gallmeier MM, Lowery MG, Volkmer B. Effects of chronic low-dose ultraviolet B radiation on DNA damage and repair in mouse skin. Cancer Res 1999; 59:2875-84. [PMID: 10383149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/13/2023]
Abstract
Chronic exposure to sunlight causes skin cancer in humans, yet little is known about how habitual exposure to low doses of ultraviolet B radiation (UVB) affects DNA damage in the skin. We treated Skh-1 hairless mice with daily doses of suberythemal UVB for 40 days and analyzed the amount and distribution of DNA photodamage using RIAs and immunofluorescence micrography. We found that DNA damage accumulated in mouse skin as a result of chronic irradiation and that this damage persisted in the dermis and epidermis for several weeks after the chronic treatment was terminated. Although the persistent damage was evenly distributed throughout the dermis, it remained in the epidermis as a small number of heavily damaged cells at the dermal-epidermal boundary. Rates of DNA damage induction and repair were determined at different times over the course of chronic treatment in response to a higher challenge dose of UVB light. The amount of damage induced by the challenge dose increased in response to chronic exposure, and excision repair of cyclobutane pyrimidine dimers and pyrimidine(6-4)pyrimidone dimers was significantly reduced. The sensitization of mouse epidermal DNA to photoproduct induction, the reduction in excision repair, and the accumulation of nonrepairable DNA damage in the dermis and epidermis suggest that chronic low-dose exposure to sunlight may significantly enhance the predisposition of mammalian skin to sunlight-induced carcinogenesis.
Collapse
Affiliation(s)
- D L Mitchell
- Department of Carcinogenesis, The University of Texas M.D. Anderson Cancer Center, Smithville 78957, USA.
| | | | | | | | | | | | | | | | | |
Collapse
|
42
|
Connerney JE, Acuna MH, Wasilewski PJ, Ness NF, Reme H, Mazelle C, Vignes D, Lin RP, Mitchell DL, Cloutier PA. Magnetic lineations in the ancient crust of mars. Science 1999; 284:794-8. [PMID: 10221909 DOI: 10.1126/science.284.5415.794] [Citation(s) in RCA: 387] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
The Mars Global Surveyor spacecraft, in a highly elliptical polar orbit, obtained vector magnetic field measurements above the surface of Mars (altitudes >100 kilometers). Crustal magnetization, mainly confined to the most ancient, heavily cratered martian highlands, is frequently organized in east-west-trending linear features, the longest extending over 2000 kilometers. Crustal remanent magnetization exceeds that of terrestrial crust by more than an order of magnitude. Groups of quasi-parallel linear features of alternating magnetic polarity were found. They are reminiscent of similar magnetic features associated with sea floor spreading and crustal genesis on Earth but with a much larger spatial scale. They may be a relic of an era of plate tectonics on Mars.
Collapse
Affiliation(s)
- JE Connerney
- NASA Goddard Space Flight Center, Greenbelt, MD 20771, USA. Bartol Research Institute, University of Delaware, Newark, DE 19716, USA. Centre d'Etude Spatiale des Rayonnements, 31028 Toulouse Cedex 4, France. Space Sciences Laboratory, University
| | | | | | | | | | | | | | | | | | | |
Collapse
|
43
|
Abstract
PURPOSE Ultraviolet-B radiation (290-320 nm) produces cataracts in animals and has been associated with human cataract formation in several epidemiological studies. UVB radiation decreases the long-term cell survival and changes the pattern of protein synthesis in cultured lens epithelial cells. However, the relationship between DNA photoproduct formation and long term cell survival in human lens epithelial cells is not known. In the present work, we used human lens epithelial cells with extended lifespan (HLE B-3 cells) to examine the kinetics of DNA repair and cell survival after UVB exposure. METHODS Cyclobutane pyrimidine dimers and pyrimidine-pyrimidone (6-4) photoproducts were analyzed by radioimmunoassay. Long-term survival of the cells was determined by measuring their ability form colonies when plated at low density. RESULTS HLE B-3 cells were repair competent after UVB (302 nm) exposure. Excision repair of the (6-4) photoproduct was more efficient than that of the cyclobutane dimer. Ninety five percent of the (6-4) photoproducts were repaired 24 h after 400 J/m2 UVB exposure, whereas 50% of the cyclobutane dimers were repaired during this time. When cells were split for the clonogenic assay immediately after irradiation, only 10% of the cells formed colonies following 7 days of culture in the serum-containing medium. When cells were split for the clonogenic assay after a 48 hour incubation in serum-containing medium, the colony-forming ability of the irradiated cells increased to 60% following culture in a serum-containing medium. CONCLUSIONS These results indicate a close correlation between the repair of cyclobutane dimers and the increase in the long-term survival of the cells as measured by their colony-forming ability. The extended lifespan human lens epithelial cells HLE B-3 may be a useful model to investigate the mechanism and regulation of UVB-induced DNA repair in human lens cells.
Collapse
Affiliation(s)
- U P Andley
- Department of Ophthalmology and Visual Sciences, Washington University School of Medicine, St. Louis, Missouri 63110, USA.
| | | | | |
Collapse
|
44
|
Abstract
Despite the benefits of sunscreens, ultraviolet (UV) exposure can still lead to skin cancer. In this study we investigated the effect of topical application of the antioxidant vitamin E acetate (VEA) on the inhibition of UV-induced carcinogenesis. Hairless SKH-1 mice received 5.2 mg of VEA 30 min before (VEA/UV) or after (UV/ VEA) a single minimal erythemic dose of UV light. Vehicle-control animals received acetone 30 min before UV exposure (Ace/UV). After 24 h, cyclobutane dimer repair was twofold and 1.5-fold greater in the UVNEA and VEA/UV groups, respectively. Expression of p53 protein in the UV/VEA group was maximum at 12 h after UV exposure, whereas in the Ace/UV- and VEA/UV-treated mice, maximum p53 immunostaining was statistically higher at 15 h (P = 0.03). DNA synthesis as determined by 5-bromo-2'-deoxyuridine incorporation was twofold higher after 15 h in all groups but was not statistically different among treatment groups. Protein levels of cyclin D1 and p21 were increased in both VEA groups by 6 h. In addition, VEA treatments delayed tumor formation and yield for the first 20 wk, although this difference was lost by 30 wk. The telomerase activity of carcinomas from the UV/VEA-treated mice was statistically lower than that of the Ace/UV-treated mice (P = 0.05). This study showed that although VEA may mitigate some of the initial events associated with UV irradiation such as DNA damage and p53 expression, it has limited potential in preventing UV-induced proliferation and tumor formation.
Collapse
Affiliation(s)
- T R Berton
- Division of Nutritional Sciences, The University of Texas at Austin, USA
| | | | | | | | | | | |
Collapse
|
45
|
Cain JR, Mitchell DL. Soft liner-retained, implant-supported overdenture: a technical note. Int J Oral Maxillofac Implants 1998; 13:857-60. [PMID: 9857598] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/09/2023] Open
Abstract
This paper describes the design and fabrication of a soft liner-retained, implant-supported overdenture used in 10 patients over a period of 1 to 6 years. A final complete denture impression is made of the dental arch, including implant abutments extending 5 mm above the gingival tissue. The master cast is fabricated with actual abutments placed in the impression. After the final wax try-in, the denture is flasked in the usual manner with the metal abutments in place. Before packing with acrylic resin, plastic tubing 1 to 2 mm thick is placed around each abutment. The denture is trial packed and allowed to bench cure over night. The plastic tubing is then removed and a soft denture lining material is placed in these areas only. The flask is closed and cured according to the manufacturer's recommendation. The denture is delivered as a conventional overdenture.
Collapse
Affiliation(s)
- J R Cain
- University of Oklahoma College of Dentistry, Oklahoma City, USA
| | | |
Collapse
|
46
|
Lin RP, Mitchell DL, Curtis DW, Anderson KA, Carlson CW, McFadden J, Acuna MH, Hood LL, Binder A. Lunar surface magnetic fields and their interaction with the solar wind: results from lunar prospector. Science 1998; 281:1480-4. [PMID: 9727969 DOI: 10.1126/science.281.5382.1480] [Citation(s) in RCA: 200] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
The magnetometer and electron reflectometer experiment on the Lunar Prospector spacecraft has obtained maps of lunar crustal magnetic fields and observed the interaction between the solar wind and regions of strong crustal magnetic fields at high selenographic latitude (30 degreesS to 80 degreesS) and low ( approximately 100 kilometers) altitude. Electron reflection maps of the regions antipodal to the Imbrium and Serenitatis impact basins, extending to 80 degreesS latitude, show that crustal magnetic fields fill most of the antipodal zones of those basins. This finding provides further evidence for the hypothesis that basin-forming impacts result in magnetization of the lunar crust at their antipodes. The crustal magnetic fields of the Imbrium antipode region are strong enough to deflect the solar wind and form a miniature (100 to several hundred kilometers across) magnetosphere, magnetosheath, and bow shock system.
Collapse
Affiliation(s)
- RP Lin
- R. P. Lin, Space Sciences Laboratory and Physics Department, University of California, Berkeley, CA 94720, USA. D. L. Mitchell, D. W. Curtis, K. A. Anderson, C. W. Carlson, J. McFadden, Space Sciences Laboratory, University of California
| | | | | | | | | | | | | | | | | |
Collapse
|
47
|
Baran AJ, Foot JS, Mitchell DL. Ice-crystal absorption: a comparison between theory and implications for remote sensing. Appl Opt 1998; 37:2207-2215. [PMID: 18273143 DOI: 10.1364/ao.37.002207] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
The problem of the disagreement between cirrus crystal sizes determined remotely and by in situ measurements is shown to be due to inappropriate application of Mie theory. We retrieved the absorption optical depth at 8.3 and 11.1 mum from 11 tropical anvil cirrus clouds, using data from the High Resolution Infrared Radiation Sounder (HIRS). We related the absorption optical depth ratio between the two wavelengths to crystal size (the size was defined in terms of the crystal median mass dimension) by assuming Mie theory applied to ice spheres and anomalous diffraction theory (ADT) applied to hexagonal columns, hexagonal plates, bullet rosettes, and aggregates (polycrystals). The application of Mie theory to retrievals yielded crystal sizes approximately one third those obtained with ADT. The retrievals of crystal size by use of HIRS data are compared with measurements of habit and crystal size obtained from in situ measurements of tropical anvil cirrus particles. The results of the comparison show that ADT provides the more realistic retrieval. Moreover, we demonstrate that at infrared wavelengths retrieval of crystal size depends on assumed habit. The reason why Mie theory predicts smaller sizes than ADT is shown to result from particle geometry and enhanced absorption owing to the capture of photons from above the edge of the particle (tunneling). The contribution of particle geometry to absorption is three times greater than from tunneling, but this process enhances absorption by a further 35%. The complex angular momentum and T-matrix methods are used to show that the contribution to absorption by tunneling is diminished as the asphericity of spheroidal particles is increased. At an aspect ratio of 6 the contribution to the absorption that is due to tunneling is substantially reduced for oblate particles, whereas for prolate particles the tunneling contribution is reduced by 50% relative to the sphere.
Collapse
|
48
|
Harmon JK, Ostro SJ, Benner LAM, Rosema KD, Jurgens RF, Winkler R, Yeomans DK, Choate D, Cormier R, Giorgini JD, Mitchell DL, Chodas PW, Rose R, Kelley D, Slade MA, Thomas ML. Radar detection of the nucleus and coma of comet hyakutake. Science 1997; 278:1921-4. [PMID: 9395389 DOI: 10.1126/science.278.5345.1921] [Citation(s) in RCA: 45] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Radar observations of comet Hyakutake (C/1996 B2) made at the Goldstone Deep Space Communications Complex in California have detected echoes from the nucleus and from large grains in the inner coma. The nucleus of this bright comet was estimated to be only 2 to 3 kilometers in diameter. Models of the coma echo indicate backscatter from porous, centimeter-size grains ejected anisotropically at velocities of tens of meters per second. The radar observations suggest that a comet's activity may be a poor indicator of its size and provide evidence that large grains constitute an important component of the mass loss from a typical active comet.
Collapse
Affiliation(s)
- JK Harmon
- J. K. Harmon, National Astronomy and Ionosphere Center, Arecibo Observatory, Post Office Box 995, Arecibo, PR 00614, USA. S. J. Ostro, L. A. M. Benner, K. D. Rosema, R. F. Jurgens, R. Winkler, D. K. Yeomans, D. Choate, R. Cormier, J. D. Giorg
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
Collapse
|
49
|
Abstract
STATEMENT OF PROBLEM Contamination of dental casts can occur if the record bases are improperly disinfected or inadvertently not disinfected during fabrication of a prosthesis. It is essential to develop an effective means of disinfecting dental casts from professional, medical, and legal points of view. PURPOSE This study determined whether: (1) saliva contamination on the surface of the dental cast contributed to bacterial growth over time and (2) cleaning or disinfecting of dental casts can minimize bacterial growth. MATERIAL AND METHODS Five dental casts were contaminated with saliva. Each cast was divided into six areas and swabbed at 15, 30, 60, 120, 180, and 240 minutes. Sheep blood agar plates were inoculated and incubated at 37 degrees C for 72 hours. Standardized dental stone cylinders were contaminated with 25 microliters of saliva and treated by rinsing in tap water, scrubbing with soap and tap water, soaking in 2% glutaraldehyde, or as controls with and without saliva contamination (n = 12). The treated dental stone cylinders were placed in individual test tubes containing 2.5 ml of sterile phosphate-buffered solution and a final dilution of 10(-4) was achieved. Sheep blood agar plates were inoculated and incubated at 37 degrees C for 24 hours. RESULTS Contamination of dental casts did not decrease, even when allowed to sit 4 hours before handling. Results also demonstrated that rinsing saliva-treated stone cylinders for 20 seconds significantly diminished bacterial contamination. Scrubbing with soap and tap water or soaking in 2% glutaraldehyde significantly reduced the bacterial contamination of saliva-treated stone cylinders when compared with rinsing with tap water. CONCLUSION Bacterial contamination of dental casts can occur and requires an effective method of disinfecting.
Collapse
Affiliation(s)
- D L Mitchell
- Department of Implantology, University of Oklahoma College of Dentistry, Oklahoma City, USA
| | | | | | | | | |
Collapse
|
50
|
Berton TR, Mitchell DL, Fischer SM, Locniskar MF. Epidermal proliferation but not quantity of DNA photodamage is correlated with UV-induced mouse skin carcinogenesis. J Invest Dermatol 1997; 109:340-7. [PMID: 9284102 DOI: 10.1111/1523-1747.ep12335984] [Citation(s) in RCA: 60] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
The hairless SKH-1 mouse strain has a higher skin tumor incidence, shorter tumor latency, and higher tumor yield in response to ultraviolet (UV) irradiation than the SENCAR strain. In this study we assessed the differences in UV susceptibility of both strains by measuring DNA photodamage and epidermal proliferation after one UV treatment and after 1, 3, 6, and 9 wk of chronic UV irradiation. Induction rates for cyclobutane pyrimidine dimers (CPDs) and pyrimidine (6-4) pyrimidone photoproducts [(6-4) PDs] were significantly greater in the SKH-1 strain than the SENCAR strain, but no strain differences in repair kinetics were detected for CPDs or (6-4) PDs. With chronic UV exposure we observed the following: (i) there was an equal amount of DNA photodamage in both strains; (ii) the number of (6-4) PDs was significantly greater than the CPDs after 6 wk; (iii) there were a significantly greater number of epidermal cells (1.5-fold increase) in the SKH-1 strain; (iv) the number of cycling cells, as measured by 5-bromo-2'-deoxyuridine (BrdU), were located both basally and suprabasally and were significantly greater in the SKH-1 strain; and (v) the number of cells immunoreactive to p53 was equivalent in both strains, but immunoreactive cells were located suprabasally in the SKH-1 strain after 9 wk of UV. These results show that the etiologic role of UV in tumorigenesis is dependent on events other than the amount of DNA photodamage in mouse epidermis.
Collapse
Affiliation(s)
- T R Berton
- Division of Nutritional Sciences, University of Texas at Austin, U.S.A
| | | | | | | |
Collapse
|