1
|
Harl J, Fauchois A, Puech MP, Gey D, Ariey F, Izac B, Weissenböck H, Chakarov N, Iezhova T, Valkiūnas G, Duval L. Novel phylogenetic clade of avian Haemoproteus parasites (Haemosporida, Haemoproteidae) from Accipitridae raptors, with description of a new Haemoproteus species. Parasite 2024; 31:5. [PMID: 38334685 PMCID: PMC10854483 DOI: 10.1051/parasite/2023066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Accepted: 12/18/2023] [Indexed: 02/10/2024] Open
Abstract
Avian haemosporidian parasites (order Haemosporida, phylum Apicomplexa) are blood and tissue parasites transmitted by blood-sucking dipteran insects. Three genera (Plasmodium, Haemoproteus and Leucocytozoon) have been most often found in birds, with over 270 species described and named in avian hosts based mainly on the morphological characters of blood stages. A broad diversity of Haemoproteus parasites remains to be identified and characterized morphologically and molecularly, especially those infecting birds of prey, an underrepresented bird group in haemosporidian parasite studies. The aim of this study was to investigate and identify Haemoproteus parasites from a large sample comprising accipitriform raptors of 16 species combining morphological and new molecular protocols targeting the cytb genes of this parasite group. This study provides morphological descriptions and molecular characterizations of two Haemoproteus species, H. multivacuolatus n. sp. and H. nisi Peirce and Marquiss, 1983. Haemoproteus parasites of this group were so far found in accipitriform raptors only and might be classified into a separate subgenus or even genus. Cytb sequences of these parasites diverge by more than 15% from those of all others known avian haemosporidian genera and form a unique phylogenetic clade. This study underlines the importance of developing new diagnostic tools to detect molecularly highly divergent parasites that might be undetectable by commonly used conventional tools.
Collapse
Affiliation(s)
- Josef Harl
- Institute of Pathology, Department of Pathobiology, University of Veterinary Medicine Vienna Veterinaerplatz 1 1210 Vienna Austria
| | - Anaïs Fauchois
- Département Adaptations du Vivant (AVIV), Molécules de Communication et Adaptation des Microorganismes (MCAM, UMR 7245 CNRS), Muséum National d’Histoire Naturelle, CNRS, CP 52 57 rue Cuvier 75231 Cedex 05 Paris France
| | - Marie-Pierre Puech
- Hôpital de la faune sauvage des Garrigues et Cévennes – Goupil Connexion 34190 Brissac France
| | - Delphine Gey
- Département Adaptations du Vivant (AVIV), Molécules de Communication et Adaptation des Microorganismes (MCAM, UMR 7245 CNRS), Muséum National d’Histoire Naturelle, CNRS, CP 52 57 rue Cuvier 75231 Cedex 05 Paris France
| | - Frédéric Ariey
- Université de Paris, INSERM 1016, Institut Cochin, Service de Parasitologie-Mycologie Hôpital Cochin Paris France
| | - Brigitte Izac
- Université de Paris, INSERM 1016, Institut Cochin, Service de Parasitologie-Mycologie Hôpital Cochin Paris France
| | - Herbert Weissenböck
- Institute of Pathology, Department of Pathobiology, University of Veterinary Medicine Vienna Veterinaerplatz 1 1210 Vienna Austria
| | - Nayden Chakarov
- Department of Animal Behaviour, Bielefeld University Konsequenz 45 33615 Bielefeld Germany
| | | | | | - Linda Duval
- Département Adaptations du Vivant (AVIV), Molécules de Communication et Adaptation des Microorganismes (MCAM, UMR 7245 CNRS), Muséum National d’Histoire Naturelle, CNRS, CP 52 57 rue Cuvier 75231 Cedex 05 Paris France
| |
Collapse
|
2
|
Ben Youssef-Dridi S, Antar R, Gey D, Justine JL, Gargouri L. Morphological and molecular studies of the life-cycle stages of the monorchiid Monorchis parvus (Looss, 1902) (Digenea) from the Southern Mediterranean coast (Tunisia). Parasitol Res 2023; 122:2819-2833. [PMID: 37749315 DOI: 10.1007/s00436-023-07967-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2022] [Accepted: 09/02/2023] [Indexed: 09/27/2023]
Abstract
The elucidation of life-cycles of digeneans, with their successive larval stages, is facilitated by the use of molecular markers. Samples of sporocysts containing cercariae and metacercariae belonging to Monorchis Monticelli, 1893 were collected from naturally infected bivalves, Cerastoderma glaucum (Bruguière, 1789), and adult forms of Monorchis spp. were collected from sparid fishes of the genus Diplodus. All specimens were collected in the Gulf of Gabès, southern Tunisia. The identities of the examined molluscs and fishes were determined via molecular barcoding of their COI gene. Sequences of COI and ITS1 genes were also obtained for both larval and adult stages of collected parasite specimens. Genetic sequence data generated for the collected larval specimens only differed minimally from the sequence data of adults identified as Monorchis parvus; we attribute the difference to intraspecific variation. The morpho-anatomical study showed that the different stages of M. parvus collected from the Tunisian coasts had the same morphology as those reported in European waters with a lag in maturity and lower measurements. The species is recorded and molecularly characterised for the first time off the Tunisian coasts.
Collapse
Affiliation(s)
- Soumaya Ben Youssef-Dridi
- Faculty of Sciences of Tunis, Laboratory of Diversity, Management and Conservation of Biological Systems, University of Tunis El Manar, LR18ES06, Tunis, Tunisia.
| | - Rym Antar
- Faculty of Sciences of Tunis, Laboratory of Diversity, Management and Conservation of Biological Systems, University of Tunis El Manar, LR18ES06, Tunis, Tunisia
| | - Delphine Gey
- Service de Systématique Moléculaire, UMS 2700 CNRS, Muséum National d'Histoire Naturelle, Sorbonne Université, CP 26, 43 Rue Cuvier, 75231 Cedex 05, Paris, France
| | - Jean-Lou Justine
- Institut de Systématique, Évolution, Biodiversité (ISYEB), MNHN, CNRS, Sorbonne Université, EPHE, Université des Antilles, Muséum National d'Histoire Naturelle, 57 Rue Cuvier, CP 51, 75005, Paris, France
| | - Lamia Gargouri
- Faculty of Sciences of Tunis, Laboratory of Diversity, Management and Conservation of Biological Systems, University of Tunis El Manar, LR18ES06, Tunis, Tunisia
| |
Collapse
|
3
|
González C, Ballesteros-Mejia L, Díaz-Díaz J, Toro-Vargas DM, Amarillo-Suarez AR, Gey D, León C, Tovar E, Arias M, Rivera N, Buitrago LS, Pinto-Moraes RH, Sano Martins IS, Decaëns T, González MA, Kitching IJ, Rougerie R. Deadly and venomous Lonomia caterpillars are more than the two usual suspects. PLoS Negl Trop Dis 2023; 17:e0011063. [PMID: 36821543 PMCID: PMC9949635 DOI: 10.1371/journal.pntd.0011063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Accepted: 12/28/2022] [Indexed: 02/24/2023] Open
Abstract
Caterpillars of the Neotropical genus Lonomia (Lepidoptera: Saturniidae) are responsible for some fatal envenomation of humans in South America inducing hemostatic disturbances in patients upon skin contact with the caterpillars' spines. Currently, only two species have been reported to cause hemorrhagic syndromes in humans: Lonomia achelous and Lonomia obliqua. However, species identifications have remained largely unchallenged despite improved knowledge of venom diversity and growing evidence that the taxonomy used over past decades misrepresents and underestimates species diversity. Here, we revisit the taxonomic diversity and distribution of Lonomia species using the most extensive dataset assembled to date, combining DNA barcodes, morphological comparisons, and geographical information. Considering new evidence for seven undescribed species as well as three newly proposed nomenclatural changes, our integrative approach leads to the recognition of 60 species, of which seven are known or strongly suspected to cause severe envenomation in humans. From a newly compiled synthesis of epidemiological data, we also examine the consequences of our results for understanding Lonomia envenomation risks and call for further investigations of other species' venom activities. This is required and necessary to improve alertness in areas at risk, and to define adequate treatment strategies for envenomed patients, including performing species identification and assessing the efficacy of anti-Lonomia serums against a broader diversity of species.
Collapse
Affiliation(s)
- Camila González
- Centro de Investigaciones en Microbiología y Parasitología Tropical (CIMPAT), Facultad de Ciencias, Universidad de los Andes, Bogotá, Colombia, Bogotá, Colombia
- * E-mail: ;
| | - Liliana Ballesteros-Mejia
- Institut de Systématique, Évolution, Biodiversité (ISYEB), Muséum national d’Histoire naturelle, CNRS, EPHE, Sorbonne Université, Université des Antilles, Paris, France
- CESAB, Centre de synthèse et d’Analyse sur la Biodiversité, Montpellier, France
| | - Juana Díaz-Díaz
- Centro de Investigaciones en Microbiología y Parasitología Tropical (CIMPAT), Facultad de Ciencias, Universidad de los Andes, Bogotá, Colombia, Bogotá, Colombia
| | - Diana M. Toro-Vargas
- Centro de Investigaciones en Microbiología y Parasitología Tropical (CIMPAT), Facultad de Ciencias, Universidad de los Andes, Bogotá, Colombia, Bogotá, Colombia
| | | | - Delphine Gey
- Institut de Systématique, Évolution, Biodiversité (ISYEB), Muséum national d’Histoire naturelle, CNRS, EPHE, Sorbonne Université, Université des Antilles, Paris, France
| | - Cielo León
- Centro de Investigaciones en Microbiología y Parasitología Tropical (CIMPAT), Facultad de Ciencias, Universidad de los Andes, Bogotá, Colombia, Bogotá, Colombia
| | - Eduardo Tovar
- Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, Bogotá, Colombia
| | - Mónica Arias
- CIRAD, UMR PHIM, Montpellier, France
- PHIM, Univ Montpellier, CIRAD, INRAE, Institut Agro, IRD, Montpellier, France
| | - Nazario Rivera
- Secretaría de Salud de Casanare. Area de Salud Pública, Yopal, Colombia
| | | | | | | | - Thibaud Decaëns
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | - Mailyn A. González
- Instituto de Investigación de Recursos Biológicos Alexander von Humboldt, Bogotá, Colombia
| | | | - Rodolphe Rougerie
- Institut de Systématique, Évolution, Biodiversité (ISYEB), Muséum national d’Histoire naturelle, CNRS, EPHE, Sorbonne Université, Université des Antilles, Paris, France
- * E-mail: ;
| |
Collapse
|
4
|
Ayadi ZEM, Tazerouti F, Gey D, Justine JL. A revision of Plectanocotyle (Monogenea, Plectanocotylidae), with molecular barcoding of three species and the description of a new species from the streaked gurnard Chelidonichthys lastoviza off Algeria. PeerJ 2022; 10:e12873. [PMID: 35178303 PMCID: PMC8815378 DOI: 10.7717/peerj.12873] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2018] [Accepted: 01/11/2022] [Indexed: 01/10/2023] Open
Abstract
BACKGROUND The family Plectanocotylidae includes parasites of the gills of marine fish; although nine genera and about 20 species have been described, almost no molecular information is available. Putting aside Plectanocotyle elliptica Diesing, 1850, supposedly a parasite of the white perch Morone americana, never found again since its original description, two species were valid within Plectanocotyle Diesing, 1850 before this work: Plectanocotyle gurnardi (Van Beneden & Hesse, 1863) Llewellyn, 1941 and Plectanocotyle major Boudaya, Neifar & Euzet, 2006. METHODS In this paper, we describe the third species of the genus Plectanocotyle and perform a comparative morphological and molecular analysis of the three species and of Triglicola obscura (Euzet & Suriano, 1974) Mamaev, 1976. Host fishes were also barcoded (COI) for confirmation of host identifications. RESULTS Plectanocotyle lastovizae n. sp. is described from the gills of the streaked gurnard Chelidonichthys lastoviza collected off Algeria. The species is compared with specimens of Plectanocotyle cf. gurnardi (from C. lastoviza) from the same locality and P. major and T. obscura (both from the longfin gurnard C. obscurus). Molecules from Plectanocotyle cf. gurnardi could not be compared with P. gurnardi from the type-host and type-locality and we kept the status of the Mediterranean specimens as pending. Algeria is a new geographic record for P. major and T. obscura. Plectanocotyle lastovizae n. sp. is distinguished from the other species found in the Mediterranean by the measurements of clamps, number of testes, and COI sequences, with notable divergence (7.8-11.8%) from the other two species of the genus. DISCUSSION We briefly present a list of currently known members of the family Plectanocotylidae, their biology and their hosts.
Collapse
Affiliation(s)
- Zouhour El Mouna Ayadi
- Faculté des Sciences Biologiques, Université des Sciences et de la Technologie Houari Boumediene, Alger, Algeria
| | - Fadila Tazerouti
- Faculté des Sciences Biologiques, Université des Sciences et de la Technologie Houari Boumediene, Alger, Algeria
| | - Delphine Gey
- Molécules de Communication et Adaptation des Micro-Organismes, Muséum National d’Histoire Naturelle, Paris, France
| | - Jean-Lou Justine
- ISYEB-Institut de Systématique, Évolution, Biodiversité, Muséum National d’Histoire Naturelle, Paris, France
| |
Collapse
|
5
|
Justine JL, Gastineau R, Gros P, Gey D, Ruzzier E, Charles L, Winsor L. Hammerhead flatworms (Platyhelminthes, Geoplanidae, Bipaliinae): mitochondrial genomes and description of two new species from France, Italy, and Mayotte. PeerJ 2022; 10:e12725. [PMID: 35178290 PMCID: PMC8815365 DOI: 10.7717/peerj.12725] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2021] [Accepted: 12/10/2021] [Indexed: 01/07/2023] Open
Abstract
BACKGROUND New records of alien land planarians are regularly reported worldwide, and some correspond to undescribed species of unknown geographic origin. The description of new species of land planarians (Geoplanidae) should classically be based on both external morphology and histology of anatomical structures, especially the copulatory organs, ideally with the addition of molecular data. METHODS Here, we describe the morphology and reproductive anatomy of a species previously reported as Diversibipalium "black", and the morphology of a species previously reported as Diversibipalium "blue". Based on next generation sequencing, we obtained the complete mitogenome of five species of Bipaliinae, including these two species. RESULTS The new species Humbertium covidum n. sp. (syn: Diversibipalium "black" of Justine et al., 2018) is formally described on the basis of morphology, histology and mitogenome, and is assigned to Humbertium on the basis of its reproductive anatomy. The type-locality is Casier, Italy, and other localities are in the Department of Pyrénées-Atlantiques, France; some published or unpublished records suggest that this species might also be present in Russia, China, and Japan. The mitogenomic polymorphism of two geographically distinct specimens (Italy vs France) is described; the cox1 gene displayed 2.25% difference. The new species Diversibipalium mayottensis n. sp. (syn: Diversibipalium "blue" of Justine et al., 2018) is formally described on the basis of external morphology and complete mitogenome and is assigned to Diversibipalium on the basis of an absence of information on its reproductive anatomy. The type- and only known locality is the island of Mayotte in the Mozambique Channel off Africa. Phylogenies of bipaliine geoplanids were constructed on the basis of SSU, LSU, mitochondrial proteins and concatenated sequences of cox1, SSU and LSU. In all four phylogenies, D. mayottensis was the sister-group to all the other bipaliines. With the exception of D. multilineatum which could not be circularised, the complete mitogenomes of B. kewense, B. vagum, B. adventitium, H. covidum and D. mayottensis were colinear. The 16S gene in all bipaliine species was problematic because usual tools were unable to locate its exact position. CONCLUSION Next generation sequencing, which can provide complete mitochondrial genomes as well as traditionally used genes such as SSU, LSU and cox1, is a powerful tool for delineating and describing species of Bipaliinae when the reproductive structure cannot be studied, which is sometimes the case of asexually reproducing invasive species. The unexpected position of the new species D. mayottensis as sister-group to all other Bipaliinae in all phylogenetic analyses suggests that the species could belong to a new genus, yet to be described.
Collapse
Affiliation(s)
- Jean-Lou Justine
- ISYEB-Institut de Systématique, Évolution, Biodiversité, Muséum National d’Histoire Naturelle, Paris, France
| | - Romain Gastineau
- Institute of Marine and Environmental Sciences, University of Szczecin, Szczecin, Poland
| | - Pierre Gros
- Amateur Naturalist, Unaffiliated, Cagnes-sur-Mer, France
| | - Delphine Gey
- Molécules de Communication et Adaptation des Micro-Organismes, Muséum National d’Histoire Naturelle, Paris, France
| | - Enrico Ruzzier
- Department of Agronomy, Food, Natural Resources, Animals and the Environment (DAFNAE), Padova, Italy
| | | | - Leigh Winsor
- James Cook University, Townsville, Queensland, Australia
| |
Collapse
|
6
|
Bouguerche C, Tazerouti F, Gey D, Justine JL. Triple barcoding for a hyperparasite, its parasitic host, and the host itself: a study of Cyclocotyla bellones (Monogenea) on Ceratothoa parallela (Isopoda) on Boops boops (Teleostei). Parasite 2021; 28:49. [PMID: 34096866 PMCID: PMC8183466 DOI: 10.1051/parasite/2021044] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2020] [Accepted: 05/07/2021] [Indexed: 11/15/2022] Open
Abstract
Cyclocotyla bellones Otto, 1823 (Diclidophoridae) is a monogenean characterised by an exceptional way of life. It is a hyperparasite that attaches itself to the dorsal face of isopods, themselves parasites in the buccal cavity of fishes. In this study, Cy. bellones was found on Ceratothoa parallela (Otto, 1828), a cymothoid isopod parasite of the sparid fish Boops boops off Algeria in the Mediterranean Sea. We provide, for the first time, molecular barcoding information of a hyperparasitic monogenean, the parasitic crustacean host, and the fish host, with COI sequences.
Collapse
Affiliation(s)
- Chahinez Bouguerche
- Université des Sciences et de la Technologie Houari Boumediene, Faculté des Sciences Biologiques, Laboratoire de Biodiversité et Environnement : Interactions – Génomes BP 32 El Alia, Bab Ezzouar, Algiers Algeria
- Institut Systématique Évolution Biodiversité (ISYEB), Muséum National d’Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles 43 rue Cuvier CP 51 75231 Paris Cedex 05 France
| | - Fadila Tazerouti
- Université des Sciences et de la Technologie Houari Boumediene, Faculté des Sciences Biologiques, Laboratoire de Biodiversité et Environnement : Interactions – Génomes BP 32 El Alia, Bab Ezzouar, Algiers Algeria
| | - Delphine Gey
- Service de Systématique moléculaire, UMS 2700 CNRS, Muséum National d’Histoire Naturelle, Sorbonne Universités 43 rue Cuvier CP 26 75231 Paris Cedex 05 France
- UMR7245 MCAM, Muséum National d’Histoire Naturelle 43 rue Cuvier CP 52 75231 Paris Cedex 05 France
| | - Jean-Lou Justine
- Institut Systématique Évolution Biodiversité (ISYEB), Muséum National d’Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles 43 rue Cuvier CP 51 75231 Paris Cedex 05 France
| |
Collapse
|
7
|
Azizi R, Bouguerche C, Santoro M, Gey D, Tazerouti F, Justine JL, Bahri S. Redescription and molecular characterization of two species of Pauciconfibula (Monogenea, Microcotylidae) from trachinid fishes in the Mediterranean Sea. Parasitol Res 2021; 120:2363-2377. [PMID: 33974138 DOI: 10.1007/s00436-021-07097-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2020] [Accepted: 02/18/2021] [Indexed: 10/21/2022]
Abstract
Many Pauciconfibula spp. have a long and complicated taxonomic history. The remaining unsolved taxonomic confusion in this genus is impelled by the host range and status of Pauciconfibula spp. from trachinid fishes: Pauciconfibula trachini and Pauciconfibula draconis, from Trachinus radiatus and Trachinus draco (Trachinidae), respectively. Pauciconfibula trachini was reported on Trachinus draco, type host of Pauciconfibula draconis suggesting thus a stenoxenic specificity for the former monogenean and the occurrence of two congeneric polyopisthocotyleans on a single host. Moreover, the validity of Pauciconfibula draconis was repeatedly questioned by several authors, unjustified synonymy between the two species was proposed, and the delimitations between the two species remained unsolved. Original descriptions were also incomplete and poorly illustrated. In this study, we provide a detailed illustrated redescription of both species based on newly collected specimens of Pauciconfibula trachini and Pauciconfibula draconis collected from their type hosts from off three Mediterranean localities: Algeria, Tunisia, and Italy. Integrative taxonomy using COI sequences was applied to resolve the delimitation between Pauciconfibula trachini and P. draconis. This study provides the first DNA barcoding for members of this genus.
Collapse
Affiliation(s)
- Ramla Azizi
- Research Unit of Integrative Biology and Evolutionary and Functional Ecology of Aquatic Systems, Faculty of Sciences of Tunis, Université de Tunis El Manar, Tunis, Tunisia
| | - Chahinez Bouguerche
- Faculté des Sciences Biologiques, Laboratoire de Biodiversité et Environnement: Interactions - Génomes, Université des Sciences et de la Technologie Houari Boumediene, BP 32, El Alia Bab Ezzouar, Algérie, Alger, Algeria. .,Institut Systématique Évolution Biodiversité (ISYEB), Muséum National d'Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, 57 rue Cuvier, CP 51, Paris, 75005, France.
| | - Mario Santoro
- Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, Villa Comunale 1, 80121, Naples, Italy
| | - Delphine Gey
- Service de Systématique Moléculaire, UMS 2700 CNRS, Muséum National d'Histoire Naturelle, Sorbonne Universités, 43 Rue Cuvier, CP 26, 75231, Paris Cedex 05, France.,UMR7245 MCAM, Muséum National d'Histoire Naturelle, 61, Rue Buffon, CP52, 75231, Paris Cedex 05, France
| | - Fadila Tazerouti
- Faculté des Sciences Biologiques, Laboratoire de Biodiversité et Environnement: Interactions - Génomes, Université des Sciences et de la Technologie Houari Boumediene, BP 32, El Alia Bab Ezzouar, Algérie, Alger, Algeria
| | - Jean-Lou Justine
- Institut Systématique Évolution Biodiversité (ISYEB), Muséum National d'Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, 57 rue Cuvier, CP 51, Paris, 75005, France
| | - Sihem Bahri
- Research Unit of Integrative Biology and Evolutionary and Functional Ecology of Aquatic Systems, Faculty of Sciences of Tunis, Université de Tunis El Manar, Tunis, Tunisia
| |
Collapse
|
8
|
Justine JL, Gey D, Vasseur J, Thévenot J, Coulis M, Winsor L. Presence of the invasive land flatworm emPlatydemus/em emmanokwari/em (Platyhelminthes, Geoplanidae) in Guadeloupe, Martinique and Saint Martin (French West Indies). Zootaxa 2021; 4951:zootaxa.4951.2.11. [PMID: 33903410 DOI: 10.11646/zootaxa.4951.2.11] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2021] [Indexed: 11/04/2022]
Abstract
The land flatworm Platydemus manokwari (Platyhelminthes, Geoplanidae) is recorded from the islands of Guadeloupe, Martinique, and Saint Martin in the Caribbean arc. Photographs and records were obtained mainly from citizen science and ranged from the end of 2018 to February 2021; several specimens were deposited in the collections of the Muséum National d'Histoire Naturelle in Paris, France. Thirty records were from Guadeloupe, but only one from Martinique and from Saint Martin, respectively. The COI sequences of 3 specimens from Guadeloupe show that they belong to the World haplotype also found in many countries. We also report P. manokwari from Fort Myers, Florida, USA, with molecular characterization, which was also the World haplotype. This is the first published record of P. manokwari for Guadeloupe, Martinique and Saint Martin and the second for islands in the Caribbean, after Puerto Rico.
Collapse
Affiliation(s)
- Jean-Lou Justine
- Institut Systématique, Évolution, Biodiversité (ISYEB), Muséum National d'Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, rue Cuvier, CP 51, 75005 Paris, France,.
| | | | | | | | | | | |
Collapse
|
9
|
Justine JL, Gey D, Thévenot J, Gastineau R, Jones HD. The land flatworm Amaga expatria (Geoplanidae) in Guadeloupe and Martinique: new reports and molecular characterization including complete mitogenome. PeerJ 2020; 8:e10098. [PMID: 33240595 PMCID: PMC7659627 DOI: 10.7717/peerj.10098] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2020] [Accepted: 09/14/2020] [Indexed: 11/26/2022] Open
Abstract
BACKGROUND The land flatworm Amaga expatria Jones & Sterrer, 2005 (Geoplanidae) was described from two specimens collected in Bermuda in 1963 and 1988 and not recorded since. METHODS On the basis of a citizen science project, we received observations in the field, photographs and specimens from non-professionals and local scientists in Martinique and Guadeloupe. We barcoded (COI) specimens from both islands and studied the histology of the reproductive organs of one specimen. Based on Next Generation Sequencing, we obtained the complete mitogenome of A. expatria and some information on its prey from contaminating DNA. RESULTS We add records from 2006 to 2019 in two French islands of the Caribbean arc, Guadeloupe (six records) and Martinique (14 records), based on photographs obtained from citizen science and specimens examined. A specimen from Martinique was studied for histology of the copulatory organs and barcoded for the COI gene; its anatomy was similar to the holotype, therefore confirming species identification. The COI gene was identical for several specimens from Martinique and Guadeloupe and differed from the closest species by more than 10%; molecular characterisation of the species is thus possible by standard molecular barcoding techniques. The mitogenome is 14,962 bp in length and contains 12 protein coding genes, two rRNA genes and 22 tRNA genes; for two protein genes it was not possible to determine the start codon. The mitogenome was compared with the few available mitogenomes from geoplanids and the most similar was Obama nungara, a species from South America. An analysis of contaminating DNA in the digestive system suggests that A. expatria preys on terrestrial molluscs, and citizen science observations in the field suggest that prey include molluscs and earthworms; the species thus could be a threat to biodiversity of soil animals in the Caribbean.
Collapse
Affiliation(s)
- Jean-Lou Justine
- ISYEB - Institut de Systématique, Évolution, Biodiversité, Muséum National d’Histoire Naturelle, Paris, France
| | - Delphine Gey
- Molécules de Communication et Adaptation des Micro-Organismes, Muséum national d’Histoire naturelle, Paris, France
| | | | - Romain Gastineau
- Institute of Marine and Environmental Sciences, University of Szczecin, Szczecin, Poland
| | - Hugh D. Jones
- Life Sciences Department, Natural History Museum, London, UK
| |
Collapse
|
10
|
Bouguerche C, Tazerouti F, Gey D, Justine JL. No vagina, one vagina, or multiple vaginae? An integrative study of Pseudaxine trachuri (Monogenea, Gastrocotylidae) leads to a better understanding of the systematics of Pseudaxine and related genera. Parasite 2020; 27:50. [PMID: 32808922 PMCID: PMC7433403 DOI: 10.1051/parasite/2020046] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2020] [Accepted: 07/24/2020] [Indexed: 11/14/2022] Open
Abstract
The presence/absence and number of vaginae is a major characteristic for the systematics of the Monogenea. Three gastrocotylid genera share similar morphology and anatomy but are distinguished by this character: Pseudaxine Parona & Perugia, 1890 has no vagina, Allogastrocotyle Nasir & Fuentes Zambrano, 1983 has two vaginae, and Pseudaxinoides Lebedev, 1968 has multiple vaginae. In the course of a study of Pseudaxine trachuri Parona & Perugia 1890, we found specimens with structures resembling "multiple vaginae"; we compared them with specimens without vaginae in terms of both morphology and molecular characterisitics (COI barcode), and found that they belonged to the same species. We also investigated the male copulatory organ (MCO) of this species, the accuracy of the original description of which is known to be a matter of debate. We found that the genital atrium is armed with 12 hooks arranged as a single circle and a central hollow stylet which is probably involved in traumatic insemination. We redescribed Pseudaxine trachuri based on newly collected specimens from off the coast of Algeria and Museum specimens from off France. Specimens from the type-host, Trachurus trachurus, were found to be similar, for both molecular sequences and morphology, to those found on Boops boops. We can therefore confirm, for the first time with molecular evidence, that B. boops is a host of this parasite. We consider that Pseudaxinoides was erected on the basis of an erroneous interpretation of structures which are not vaginae and, consequently, propose the transfer of most of its species to Pseudaxine, as P. australis (Lebedev, 1968) n. comb., P. bychowskyi (Lebedev, 1977) n. comb., P. caballeroi (Lebedev, 1977) n. comb., P. cariacoensis (Nasir & Fuentes-Zambrano, 1983) n. comb., and P. vietnamensis (Lebedev, Parukhin & Roitman, 1970) n. comb. We also propose Allogastrocotyle dillonhargisorum nom. nov. for Pseudaxine bivaginalis Dillon & Hargis, 1965 to avoid a secondary homonymy.
Collapse
Affiliation(s)
- Chahinez Bouguerche
-
Université des Sciences et de la Technologie Houari Boumediene, Faculté des Sciences Biologiques, Laboratoire de Biodiversité et Environnement: Interactions – Génomes BP 32, El Alia Bab Ezzouar 16111 Alger Algérie
| | - Fadila Tazerouti
-
Université des Sciences et de la Technologie Houari Boumediene, Faculté des Sciences Biologiques, Laboratoire de Biodiversité et Environnement: Interactions – Génomes BP 32, El Alia Bab Ezzouar 16111 Alger Algérie
| | - Delphine Gey
-
Service de Systématique Moléculaire, UMS 2700 CNRS, Muséum National d’Histoire Naturelle, Sorbonne Universités 43 Rue Cuvier, CP 26 75231 Paris Cedex 05 France
-
UMR7245 MCAM, Muséum National d’Histoire Naturelle 61, Rue Buffon, CP52 75231 Paris Cedex 05 France
| | - Jean-Lou Justine
-
Institut Systématique Évolution Biodiversité (ISYEB), Muséum National d’Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles 57 Rue Cuvier, CP 51 75231 Paris Cedex 05 France
| |
Collapse
|
11
|
Justine JL, Winsor L, Gey D, Gros P, Thévenot J. Obama chez moi! The invasion of metropolitan France by the land planarian Obama nungara (Platyhelminthes, Geoplanidae). PeerJ 2020; 8:e8385. [PMID: 32071801 PMCID: PMC7007977 DOI: 10.7717/peerj.8385] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2019] [Accepted: 12/11/2019] [Indexed: 11/20/2022] Open
Abstract
Background Obama nungara is a species of land flatworm originating from South America; the species was recently described and distinguished from a similar species, Obama marmorata. Obama nungara has invaded several countries of Europe, but the extent of the invasion has not been thoroughly mapped. Methods In this article, based on a five and a half-year survey undertaken by citizen science, which yielded 530 records from 2013 to 2018, we analysed information about the invasion of Metropolitan France by O. nungara. We also investigated the variability of newly obtained cytochrome c oxidase 1 (COI) sequences of specimens from France, Italy and Switzerland. Results Obama nungara was recorded from 72 of the 96 Departments of Metropolitan France. The species is especially abundant along the Atlantic coast, from the Spanish border to Brittany, and along the Mediterranean coast, from the Spanish border to the Italian border. More than half of the records were from an altitude below 50 m, and no record was from above 500 m; mountainous regions such as the Alps, Pyrenees and Massif Central are not invaded. Local abundance can be impressive, with 100 of specimens found in a small garden. An analysis of our new COI sequences, combined with published sequences of specimens from several countries, confirmed that three clades comprise the species. The first clade, ‘Brazil’, is currently confined to this country in South America; the second clade, ‘Argentina 2’, was found in Argentina and in Europe, only in Spain; and the third, ‘Argentina 1’, was found in Argentina and in Europe, in Spain, Portugal, France, UK, Italy, Belgium, and Switzerland. This suggests that two clades of O. nungara from Argentina have invaded Europe, with one widely spread. Discussion The present findings strongly suggest that O. nungara is a highly invasive species and that the population which has invaded several countries in Europe comes from Argentina. The wide dispersion of the species and its reported local abundance, combined with the predatory character of the species, make O. nungara a potential threat to the biodiversity and ecology of the native soil fauna in Europe, and probably the most threatening species of all invasive land planarians present in Europe.
Collapse
Affiliation(s)
- Jean-Lou Justine
- ISYEB, Institut de Systématique Évolution Biodiversité, UMR7205 CNRS, EPHE, MNHN, UPMC, Université des Antilles, Muséum National d'Histoire Naturelle, Paris, France
| | - Leigh Winsor
- College of Science and Engineering, James Cook University, Townsville, QLD, Australia
| | - Delphine Gey
- Service de Systématique Moléculaire, Museum National d'Histoire Naturelle, Paris, France
| | | | - Jessica Thévenot
- UMS Patrinat (CNRS-AFB-MNHN), Muséum National d'Histoire Naturelle, Paris, France
| |
Collapse
|
12
|
Sire L, Gey D, Debruyne R, Noblecourt T, Soldati F, Barnouin T, Parmain G, Bouget C, Lopez-Vaamonde C, Rougerie R. The Challenge of DNA Barcoding Saproxylic Beetles in Natural History Collections—Exploring the Potential of Parallel Multiplex Sequencing With Illumina MiSeq. Front Ecol Evol 2019. [DOI: 10.3389/fevo.2019.00495] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
|
13
|
Bouguerche C, Tazerouti F, Gey D, Justine JL. Redescription and molecular characterisation of Allogastrocotyle bivaginalis Nasir & Fuentes Zambrano, 1983 (Monogenea: Gastrocotylidae) from Trachurus picturatus (Bowdich) (Perciformes: Carangidae) off the Algerian coast, Mediterranean Sea. Syst Parasitol 2019; 96:681-694. [PMID: 31576478 DOI: 10.1007/s11230-019-09883-7] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2019] [Accepted: 09/20/2019] [Indexed: 10/25/2022]
Abstract
Allogastrocotyle bivaginalis Nasir & Fuentes Zambrano, 1983, the sole species of Allogastrocotyle Nasir & Fuentes Zambrano, 1983, was described from Trachurus lathami Nichols off Venezuela and never recorded since. We found monogeneans on Trachurus picturatus (Bowdich) (Carangidae) off the Algerian coast, Mediterranean Sea, which had the characteristics of the genus, including, especially, paired vaginae. We compared them to the single available specimen of A. bivaginalis, the holotype. Unfortunately, this holotype does not show clamp structure and soft internal anatomy. Our specimens were similar to A. bivaginalis in most characteristics such as body shape, vaginal openings, and number of testes, clamps and hooks in genital atrium. We detected minor differences in clamp structure but could not ascertain if these were the result of incomplete observations in the original description of real morphological differences. The host fish of our specimens were barcoded (cox1) confirming their specific identity. A phylogenetic analysis of cox1 sequences showed that our sequences of A. bivaginalis were distinct from those of Pseudaxine trachuri Parona & Perugia, 1889 (distance > 15%) and of several other gastrocotylids. Finally, we could not distinguish our Mediterranean specimens from A. bivaginalis, neither on the base of morphology (because the original description is incomplete) nor on molecules (because molecular information is lacking on A. bivaginalis from Venezuela) and ascribe them to A. bivaginalis. However, hosts are different, and localities are widely separated, so it is likely that future study will show that the species from the Mediterranean is a distinct, new, species.
Collapse
Affiliation(s)
- Chahinez Bouguerche
- Université des Sciences et de la Technologie Houari Boumediene, Faculté des Sciences Biologiques, Laboratoire de Biodiversité et Environnement: Interactions - Génomes, BP 32, El Alia Bab Ezzouar, Alger, Algeria
| | - Fadila Tazerouti
- Université des Sciences et de la Technologie Houari Boumediene, Faculté des Sciences Biologiques, Laboratoire de Biodiversité et Environnement: Interactions - Génomes, BP 32, El Alia Bab Ezzouar, Alger, Algeria
| | - Delphine Gey
- Service de Systématique moléculaire, UMS 2700 CNRS, Muséum National d'Histoire Naturelle, Sorbonne Universités, CP 26, 43 rue Cuvier, 75231, Paris Cedex 05, France
| | - Jean-Lou Justine
- Institut Systématique Évolution Biodiversité (ISYEB), Muséum National d'Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, 57 rue Cuvier, CP 51, 75005, Paris, France.
| |
Collapse
|
14
|
Derouiche I, Neifar L, Gey D, Justine JL, Tazerouti F. Holocephalocotyle monstrosae n. gen. n. sp. (Monogenea, Monocotylidae) from the olfactory rosette of the rabbit fish, Chimaera monstrosa (Holocephali, Chimaeridae) in deep waters off Algeria. ACTA ACUST UNITED AC 2019; 26:59. [PMID: 31538935 PMCID: PMC6753859 DOI: 10.1051/parasite/2019060] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2019] [Accepted: 09/09/2019] [Indexed: 11/14/2022]
Abstract
Based on a molecular and morphological study, a new monocotylid genus, Holocephalocotyle n. gen. is proposed to accommodate Holocephalocotyle monstrosae n. sp., found on the olfactory rosette of the rabbit fish, Chimaera monstrosa Linnaeus (Chondrichthyes, Chimaeridae), from the Mediterranean Sea off Algeria. Identification of fish hosts was confirmed by molecular barcoding of the COI gene. A partial 28S rDNA sequence (D1-D2 domain) of Holocephalocotyle monstrosae was obtained; it was distinct from all known monocotylid sequences (p-distance: 15.5-23%). A phylogenetic tree constructed from available monocotylid sequences showed that Holocephalocotyle monstrosae was included, and basal, in a robust group including species of Merizocotyle, Mycteronastes and Empruthotrema, confirming that the species is a member of the Merizocotylinae. The new genus is unique among the Merizocotylinae in having a distinctive pattern of haptoral loculi with one central, five peripheral and seven "interperipheral loculi" partially inserted between peripheral loculi and a compartmentalised sclerotised male copulatory organ. The diagnosis of the Merizocotylinae is amended to include this new genus. The new genus represents the second monocotylid genus recorded from holocephalans.
Collapse
Affiliation(s)
- Imane Derouiche
- Université des Sciences et de la Technologie Houari Boumediene (U.S.T.H.B), Faculté des Sciences Biologiques, Département d'Écologie et Environnement, Laboratoire de Biodiversité et Environnement : Interactions et Génomes, Équipe 1 : Parasites : Biodiversité-Bioécologie-Interactions Hôtes-Parasites, BP 32, El Alia Bab Ezzouar, 16111 Alger, Algeria
| | - Lassad Neifar
- Laboratoire de Biodiversité Marine et environnement, Faculté des Sciences de Sfax, Université de Sfax, BP 1171, 3038 Sfax, Tunisia
| | - Delphine Gey
- Institut Systématique Évolution Biodiversité (ISYEB), Muséum National d'Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, 57 rue Cuvier, CP 51, 75005 Paris, France
| | - Jean-Lou Justine
- Service de Systématique Moléculaire, UMS 2700 CNRS, Muséum National d'Histoire Naturelle, CP 26, 43 Rue Cuvier, 75231 Paris Cedex 05, France
| | - Fadila Tazerouti
- Université des Sciences et de la Technologie Houari Boumediene (U.S.T.H.B), Faculté des Sciences Biologiques, Département d'Écologie et Environnement, Laboratoire de Biodiversité et Environnement : Interactions et Génomes, Équipe 1 : Parasites : Biodiversité-Bioécologie-Interactions Hôtes-Parasites, BP 32, El Alia Bab Ezzouar, 16111 Alger, Algeria
| |
Collapse
|
15
|
Justine JL, Théry T, Gey D, Winsor L. First record of the invasive land flatworm Bipalium adventitium (Platyhelminthes, Geoplanidae) in Canada. Zootaxa 2019; 4656:zootaxa.4656.3.13. [PMID: 31716820 DOI: 10.11646/zootaxa.4656.3.13] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2019] [Indexed: 11/04/2022]
Abstract
Specimens of Bipalium adventitium (Platyhelminthes, Geoplanidae) were found in Montréal, Québec, Canada. The specimens showed the typical colour pattern of the species and barcoding (Cytochrome Oxidase I) demonstrated near-identity with a sequence of the same species from the USA. This is the first record of the species in Canada.
Collapse
Affiliation(s)
- Jean-Lou Justine
- Institut Systématique Évolution Biodiversité (ISYEB), Muséum National d'Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, 57 rue Cuvier, CP 51, 75005 Paris, France.
| | | | | | | |
Collapse
|
16
|
Cacheux L, Ponger L, Gerbault-Seureau M, Loll F, Gey D, Richard FA, Escudé C. The Targeted Sequencing of Alpha Satellite DNA in Cercopithecus pogonias Provides New Insight Into the Diversity and Dynamics of Centromeric Repeats in Old World Monkeys. Genome Biol Evol 2018; 10:1837-1851. [PMID: 29860303 PMCID: PMC6061836 DOI: 10.1093/gbe/evy109] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/29/2018] [Indexed: 02/06/2023] Open
Abstract
Alpha satellite is the major repeated DNA element of primate centromeres. Specific evolutionary mechanisms have led to a great diversity of sequence families with peculiar genomic organization and distribution, which have till now been studied mostly in great apes. Using high throughput sequencing of alpha satellite monomers obtained by enzymatic digestion followed by computational and cytogenetic analysis, we compare here the diversity and genomic distribution of alpha satellite DNA in two related Old World monkey species, Cercopithecus pogonias and Cercopithecus solatus, which are known to have diverged about 7 Ma. Two main families of monomers, called C1 and C2, are found in both species. A detailed analysis of our data sets revealed the existence of numerous subfamilies within the centromeric C1 family. Although the most abundant subfamily is conserved between both species, our fluorescence in situ hybridization (FISH) experiments clearly show that some subfamilies are specific for each species and that their distribution is restricted to a subset of chromosomes, thereby pointing to the existence of recurrent amplification/homogenization events. The pericentromeric C2 family is very abundant on the short arm of all acrocentric chromosomes in both species, pointing to specific mechanisms that lead to this distribution. Results obtained using two different restriction enzymes are fully consistent with a predominant monomeric organization of alpha satellite DNA that coexists with higher order organization patterns in the C. pogonias genome. Our study suggests a high dynamics of alpha satellite DNA in Cercopithecini, with recurrent apparition of new sequence variants and interchromosomal sequence transfer.
Collapse
Affiliation(s)
- Lauriane Cacheux
- Département Adaptations du Vivant, Structure et Instabilité des Génomes, INSERM U1154, CNRS UMR7196, Sorbonne Universités, Muséum National d’Histoire Naturelle, Paris, France
- Département Origines et Evolution, Institut de Systématique, Evolution, Biodiversité, UMR 7205 MNHN, CNRS, UPMC, EPHE, Sorbonne Universités, Muséum National d’Histoire Naturelle, Paris, France
| | - Loïc Ponger
- Département Adaptations du Vivant, Structure et Instabilité des Génomes, INSERM U1154, CNRS UMR7196, Sorbonne Universités, Muséum National d’Histoire Naturelle, Paris, France
| | - Michèle Gerbault-Seureau
- Département Origines et Evolution, Institut de Systématique, Evolution, Biodiversité, UMR 7205 MNHN, CNRS, UPMC, EPHE, Sorbonne Universités, Muséum National d’Histoire Naturelle, Paris, France
| | - François Loll
- Département Adaptations du Vivant, Structure et Instabilité des Génomes, INSERM U1154, CNRS UMR7196, Sorbonne Universités, Muséum National d’Histoire Naturelle, Paris, France
| | - Delphine Gey
- Service de Systématique Moléculaire, UMS 2700 CNRS, Sorbonne Universités, Muséum National d’Histoire Naturelle, Paris, France
| | - Florence Anne Richard
- Département Origines et Evolution, Institut de Systématique, Evolution, Biodiversité, UMR 7205 MNHN, CNRS, UPMC, EPHE, Sorbonne Universités, Muséum National d’Histoire Naturelle, Paris, France
- Université Versailles St-Quentin, Montigny-le-Bretonneux, France
| | - Christophe Escudé
- Département Adaptations du Vivant, Structure et Instabilité des Génomes, INSERM U1154, CNRS UMR7196, Sorbonne Universités, Muséum National d’Histoire Naturelle, Paris, France
| |
Collapse
|
17
|
Justine JL, Winsor L, Gey D, Gros P, Thévenot J. Giant worms chez moi! Hammerhead flatworms (Platyhelminthes, Geoplanidae, Bipalium spp., Diversibipalium spp.) in metropolitan France and overseas French territories. PeerJ 2018; 6:e4672. [PMID: 29844951 PMCID: PMC5969052 DOI: 10.7717/peerj.4672] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2017] [Accepted: 04/06/2018] [Indexed: 11/20/2022] Open
Abstract
Background Species of the genera Bipalium and Diversibipalium, or bipaliines, are giants among land planarians (family Geoplanidae), reaching length of 1 m; they are also easily distinguished from other land flatworms by the characteristic hammer shape of their head. Bipaliines, which have their origin in warm parts of Asia, are invasive species, now widespread worldwide. However, the scientific literature is very scarce about the widespread repartition of these species, and their invasion in European countries has not been studied. Methods In this paper, on the basis of a four year survey based on citizen science, which yielded observations from 1999 to 2017 and a total of 111 records, we provide information about the five species present in Metropolitan France and French overseas territories. We also investigated the molecular variability of cytochrome-oxidase 1 (COI) sequences of specimens. Results Three species are reported from Metropolitan France: Bipalium kewense, Diversibipalium multilineatum, and an unnamed Diversibipalium ‘black’ species. We also report the presence of B. kewense from overseas territories, such as French Polynesia (Oceania), French Guiana (South America), the Caribbean French islands of Martinique, Guadeloupe, Saint Martin and Saint Barthélemy, and Montserrat (Central America), and La Réunion island (off South-East Africa). For B. vagum, observations include French Guiana, Guadeloupe, Martinique, Saint Barthélemy, Saint Martin, Montserrat, La Réunion, and Florida (USA). A probable new species, Diversibipalium sp. ‘blue,’ is reported from Mayotte Island (off South–East Africa). B. kewense, B. vagum and D. multilineatum each showed 0% variability in their COI sequences, whatever their origin, suggesting that the specimens are clonal, and that sexual reproduction is probably absent. COI barcoding was efficient in identifying species, with differences over 10% between species; this suggests that barcoding can be used in the future for identifying these invasive species. In Metropolitan south–west France, a small area located in the Department of Pyrénées-Atlantiques was found to be a hot-spot of bipaliine biodiversity and abundance for more than 20 years, probably because of the local mild weather. Discussion The present findings strongly suggest that the species present in Metropolitan France and overseas territories should be considered invasive alien species. Our numerous records in the open in Metropolitan France raise questions: as scientists, we were amazed that these long and brightly coloured worms could escape the attention of scientists and authorities in a European developed country for such a long time; improved awareness about land planarians is certainly necessary.
Collapse
Affiliation(s)
- Jean-Lou Justine
- Institut de Systématique, Évolution, Biodiversité (ISYEB), Muséum National d'Histoire Naturelle, Paris, France
| | - Leigh Winsor
- College of Science and Engineering, James Cook University, Townsville, QLD, Australia
| | - Delphine Gey
- Service de Systématique Moléculaire, Muséum National d'Histoire Naturelle, Paris, France
| | | | - Jessica Thévenot
- UMS Patrinat, Muséum National d'Histoire Naturelle, Paris, France
| |
Collapse
|
18
|
Moravec F, Chaabane A, Neifar L, Gey D, Justine JL. Species of Philometra (Nematoda, Philometridae) from fishes off the Mediterranean coast of Africa, with a description of Philometra rara n. sp. from Hyporthodus haifensis and a molecular analysis of Philometra saltatrix from Pomatomus saltatrix. ACTA ACUST UNITED AC 2017; 24:8. [PMID: 28287390 PMCID: PMC5364780 DOI: 10.1051/parasite/2017008] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2017] [Accepted: 02/24/2017] [Indexed: 11/16/2022]
Abstract
Two gonad-infecting species of Philometra Costa, 1845 (Nematoda, Philometridae) were recorded for the first time from marine perciform fishes off Tunisia and Libya: Philometra rara n. sp. from the rare, deep-water Haifa grouper Hyporthodus haifensis (Serranidae) off Libya and Philometra saltatrix Ramachandran, 1973 from the bluefish Pomatomus saltatrix (Pomatomidae) off Tunisia. Identification of both fish species was confirmed by molecular barcoding. Light and scanning electron microscope studies of Ph. rara n. sp. showed that it is characterized by the length of spicules (216–219 μm) and the gubernaculum (90–93 μm), the gubernaculum/spicules length ratio (1:2.32–2.43), and mainly by the shape and structure of the distal end of the gubernaculum (shovel-shaped with a wide median smooth field in dorsal view), appearing as having a dorsal protuberance in lateral view, and by the structure of the male caudal mound (dorsally interrupted); large subgravid females (70–137 mm long) are characterized by the presence of four oval submedian cephalic elevations, each of them bearing a pair of cephalic papillae of the outer circle. The finding of Ph. saltatrix off Tunisia confirms that this species is widespread throughout the Mediterranean region. A molecular analysis of our Ph. saltatrix specimens and other available philometrid cytochrome c oxidase 1 (COI) sequences showed that most species have robust clades. Sequences of Ph. saltatrix from Tunisia diverge from Ph. saltatrix from Brazil and the USA, suggesting that speciation is currently occurring between populations from both sides of the Atlantic Ocean.
Collapse
Affiliation(s)
- František Moravec
- Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, Branišovská 31, 370 05 České Budějovice, Czech Republic
| | - Amira Chaabane
- Laboratoire de Biodiversité et Écosystèmes Aquatiques, Faculté des Sciences de Sfax (FSS), Université de Sfax, BP 1171, 3038 Sfax, Tunisia
| | - Lassad Neifar
- Laboratoire de Biodiversité et Écosystèmes Aquatiques, Faculté des Sciences de Sfax (FSS), Université de Sfax, BP 1171, 3038 Sfax, Tunisia
| | - Delphine Gey
- Service de Systématique moléculaire, UMS 2700 CNRS, Muséum National d'Histoire Naturelle, Sorbonne Universités, CP 26, 43 rue Cuvier, 75231 Paris Cedex 05, France
| | - Jean-Lou Justine
- ISYEB, Institut Systématique, Évolution, Biodiversité, UMR7205 CNRS, EPHE, MNHN, UPMC, Muséum National d'Histoire Naturelle, Sorbonne Universités, CP51, 55 rue Buffon, 75231 Paris Cedex 05, France
| |
Collapse
|
19
|
Rosspopoff O, Chelysheva L, Saffar J, Lecorgne L, Gey D, Caillieux E, Colot V, Roudier F, Hilson P, Berthomé R, Da Costa M, Rech P. Direct conversion of root primordium into shoot meristem relies on timing of stem cell niche development. Development 2017; 144:1187-1200. [PMID: 28174250 DOI: 10.1242/dev.142570] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2016] [Accepted: 01/26/2017] [Indexed: 02/01/2023]
Abstract
To understand how the identity of an organ can be switched, we studied the transformation of lateral root primordia (LRP) into shoot meristems in Arabidopsis root segments. In this system, the cytokinin-induced conversion does not involve the formation of callus-like structures. Detailed analysis showed that the conversion sequence starts with a mitotic pause and is concomitant with the differential expression of regulators of root and shoot development. The conversion requires the presence of apical stem cells, and only LRP at stages VI or VII can be switched. It is engaged as soon as cell divisions resume because their position and orientation differ in the converting organ compared with the undisturbed emerging LRP. By alternating auxin and cytokinin treatments, we showed that the root and shoot organogenetic programs are remarkably plastic, as the status of the same plant stem cell niche can be reversed repeatedly within a set developmental window. Thus, the networks at play in the meristem of a root can morph in the span of a couple of cell division cycles into those of a shoot, and back, through transdifferentiation.
Collapse
Affiliation(s)
- Olga Rosspopoff
- Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Université Paris-Saclay, Versailles 78000, France.,Sorbonne Universités, UPCM Université Paris 06, UFR 927, Paris F-75005, France
| | - Liudmila Chelysheva
- Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Université Paris-Saclay, Versailles 78000, France
| | - Julie Saffar
- Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Université Paris-Saclay, Versailles 78000, France.,Université Paris-Diderot, Sorbonne Paris Cité, Paris F-75205, France
| | - Lena Lecorgne
- Sorbonne Universités, UPCM Université Paris 06, UFR 927, Paris F-75005, France
| | - Delphine Gey
- Muséum d'Histoire Naturelle, UMS 2700, OMSI, Paris F-75231, France
| | - Erwann Caillieux
- Institut de Biologie de l'Ecole Normale Supérieure, CNRS UMR8197, INSERM U1024, Paris F-75005, France
| | - Vincent Colot
- Institut de Biologie de l'Ecole Normale Supérieure, CNRS UMR8197, INSERM U1024, Paris F-75005, France
| | - François Roudier
- Institut de Biologie de l'Ecole Normale Supérieure, CNRS UMR8197, INSERM U1024, Paris F-75005, France
| | - Pierre Hilson
- Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Université Paris-Saclay, Versailles 78000, France
| | - Richard Berthomé
- LIPM, Université de Toulouse, INRA, CNRS, INPT, Castanet-Tolosan F-31126, France.,CNRS, Laboratoire des Interactions Plantes-Microorganismes, UMR2594, Castanet-Tolosan 31326, France.,Plant Genomics Research Unit, UMR INRA 1165 - CNRS 8114 - UEVE, 2, CP5708, Evry Cedex 91057, France
| | - Marco Da Costa
- Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Université Paris-Saclay, Versailles 78000, France .,Sorbonne Universités, UPCM Université Paris 06, UFR 927, Paris F-75005, France
| | - Philippe Rech
- Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Université Paris-Saclay, Versailles 78000, France .,Sorbonne Universités, UPCM Université Paris 06, UFR 927, Paris F-75005, France
| |
Collapse
|
20
|
Ayadi ZEM, Gey D, Justine JL, Tazerouti F. A new species of Microcotyle (Monogenea: Microcotylidae) from Scorpaena notata (Teleostei: Scorpaenidae) in the Mediterranean Sea. Parasitol Int 2016; 66:37-42. [PMID: 27840197 DOI: 10.1016/j.parint.2016.11.004] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2016] [Revised: 10/05/2016] [Accepted: 11/09/2016] [Indexed: 11/16/2022]
Abstract
We collected specimens of Microcotyle spp. from two species of scorpaeniform fishes off Algeria, namely Scorpaena notata and Helicolenus dactylopterus. The identification of both fishes was confirmed by molecular barcoding of the COI gene. Sequences of COI gene were also obtained for both parasite species. The species from S. notata is described as Microcotyle algeriensis n. sp., on the basis of morphological differences from other species (number of clamps, number of spines in genital atrium, number of testes). Its COI sequence differs from M. sebastis Goto, 1894 (from Sebastes schlegeli from a fish farm in South Korea) by 14.6%. The species from H. dactylopterus is distinct from M. algeriensis on the basis of morphology (number of clamps, number of spines in genital atrium) and COI sequence (4.5% divergence) and is also distinct from M. sebastis in its COI sequence (12.3%). We refrained from describing it as new because M. sebastis, a species originally described from scorpaeniform fishes off Japan, has been recorded in various hosts in the North and South Pacific, Atlantic and Mediterranean (for the latter, in the same host, H. dactylopterus). We believe that correct specific assignment of species of Microcotyle from scorpaeniform fishes needs a detailed morphological and molecular study of representatives from various locations and hosts.
Collapse
Affiliation(s)
- Zouhour El Mouna Ayadi
- Laboratoire de Biodiversité et Environnement: Interactions et Génomes, Faculté des Sciences Biologiques, Université des Sciences et de la Technologie Houari Boumediene, BP 32, El Alia Bab Ezzouar, Alger, Algeria
| | - Delphine Gey
- Service de Systématique moléculaire, UMS 2700 CNRS, Muséum National d'Histoire Naturelle, Sorbonne Universités, CP 26, 43 Rue Cuvier, 75231 Paris cedex 05, France
| | - Jean-Lou Justine
- Institut de Systématique, Évolution, Biodiversité, ISYEB, UMR 7205 - CNRS, MNHN, UPMC, EPHE, Muséum National d'Histoire Naturelle, Sorbonne Universités, 57 rue Cuvier, CP51, 75231 Paris cedex 05, France.
| | - Fadila Tazerouti
- Laboratoire de Biodiversité et Environnement: Interactions et Génomes, Faculté des Sciences Biologiques, Université des Sciences et de la Technologie Houari Boumediene, BP 32, El Alia Bab Ezzouar, Alger, Algeria.
| |
Collapse
|
21
|
Moravec F, Gey D, Justine JL. Nematode parasites of four species of Carangoides (Osteichthyes: Carangidae) in New Caledonian waters, with a description of Philometra dispar n. sp. (Philometridae). ACTA ACUST UNITED AC 2016; 23:40. [PMID: 27615321 PMCID: PMC5018933 DOI: 10.1051/parasite/2016049] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2016] [Accepted: 08/28/2016] [Indexed: 11/14/2022]
Abstract
Parasitological examination of marine perciform fishes belonging to four species of Carangoides, i.e. C. chrysophrys, C. dinema, C. fulvoguttatus and C. hedlandensis (Carangidae), from off New Caledonia revealed the presence of nematodes. The identification of carangids was confirmed by barcoding of the COI gene. The eight nematode species found were: Capillariidae gen. sp. (females), Cucullanus bulbosus (Lane, 1916) (male and females), Hysterothylacium sp. third-stage larvae, Raphidascaris (Ichthyascaris) sp. (female and larvae), Terranova sp. third-stage larvae, Philometra dispar n. sp. (male), Camallanus carangis Olsen, 1954 (females) and Johnstonmawsonia sp. (female). The new species P. dispar from the abdominal cavity of C. dinema is mainly characterised by the body length (5.14 mm), the lengths of markedly unequal spicules (163 and 96 μm) and gubernaculum (102 μm long) provided with a dorsal protuberance and a small, reflexed dorsal barb on its posterior portion. The finding of C. bulbosus represents the first record of this parasite a century after its discovery; the first study of this species by scanning electron microscopy (SEM) enabled detailed redescription. The finding of Johnstonmawsonia sp. in C. fulvoguttatus is the first record of a rhabdochonid nematode from a host belonging to the Carangidae family. Johnstonmawsonia africana Moravec & Puylaert, 1970 and J. campanae Puylaert, 1973 are transferred to Prosungulonema Roytman, 1963 as P. africanum (Moravec & Puylaert, 1970) comb. n. and P. campanae (Puylaert, 1973) n. comb.
Collapse
Affiliation(s)
- František Moravec
- Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, Branišovská 31, 370 05 České Budějovice, Czech Republic
| | - Delphine Gey
- Service de Systématique moléculaire, UMS 2700 CNRS, Muséum National d'Histoire Naturelle, Sorbonne Universités, CP 26, 43 rue Cuvier, 75231 Paris cedex 05, France
| | - Jean-Lou Justine
- ISYEB, Institut Systématique, Évolution, Biodiversité, UMR7205 CNRS, EPHE, MNHN, UPMC, Muséum National d'Histoire Naturelle, Sorbonne Universités, CP51, 57 rue Cuvier, 75231 Paris cedex 05, France
| |
Collapse
|
22
|
Chaabane A, Justine JL, Gey D, Bakenhaster MD, Neifar L. Pseudorhabdosynochus sulamericanus (Monogenea, Diplectanidae), a parasite of deep-sea groupers (Serranidae) occurs transatlantically on three congeneric hosts (Hyporthodus spp.), one from the Mediterranean Sea and two from the western Atlantic. PeerJ 2016; 4:e2233. [PMID: 27602259 PMCID: PMC4991870 DOI: 10.7717/peerj.2233] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2016] [Accepted: 06/17/2016] [Indexed: 11/21/2022] Open
Abstract
Little is known of the diversity of the monogenean parasites infesting deep-sea groupers, and there is even less information available about their geographic distributions within the ranges of their hosts. To improve our understanding of these host-parasite relationships we conducted parasitological evaluations of the deep-water Haifa grouper Hyporthodus haifensis from the southern Mediterranean off Tunisia and Libya. We collected more than one species of diplectanid monogeneans from this host, but among these only one dominant species was abundant. This proved to be morphologically very similar to Pseudorhabdosynochus sulamericanus Santos, Buchmann & Gibson, 2000, a species originally described from the congeneric host H. niveatus off Brazil and also recorded from H. niveatus and H. nigritus off Florida. Here, we conducted a morphological comparison between newly collected specimens and those previously deposited in museum collections by other authors. Further, we used COI barcoding to ascertain the specific identity of the three host species to better elucidate the circumstances that might explain the unexpectedly broad distribution of P. sulamericanus. We assigned our specimens from H. haifensis to P. sulamericanus primarily on the basis of morphological characteristics of the sclerotized vagina. We also noted morphological characteristics of eastern and western Atlantic specimens that are not clearly described or not given in previous descriptions and so prepared a redescription of the species. We confirmed, by COI barcoding, that no sister-species relationships were evident among the three hosts of P. sulamericanus. Our observation that P. sulamericanus infects unrelated host species with putatively allopatric distributions was unexpected given the very limited dispersive capabilities and the high degree of host specificity common to members of Pseudorhabdosynochus. This transatlantic distribution raises questions with regard to phylogeography and assumptions about the allopatry of Atlantic grouper species from the Americas and Afro-Eurasia. Here, we propose some hypothetical explanations for our findings.
Collapse
Affiliation(s)
- Amira Chaabane
- Faculté des Sciences de Sfax, University of Sfax , Sfax , Tunisia
| | - Jean-Lou Justine
- ISYEB, Institut de Systématique, Évolution, Biodiversité, Muséum National d'Histoire Naturelle, Sorbonne Universités , Paris , France
| | - Delphine Gey
- UMS 2700 Service de Systématique Moléculaire, Muséum National d'Histoire Naturelle, Sorbonne Universités , Paris , France
| | - Micah D Bakenhaster
- Fish and Wildlife Research Institute, Florida Fish and Wildlife Conservation Commission , St. Petersburg , FL , USA
| | - Lassad Neifar
- Faculté des Sciences de Sfax, University of Sfax , Sfax , Tunisia
| |
Collapse
|
23
|
Justine JL, Winsor L, Barrière P, Fanai C, Gey D, Han AWK, La Quay-Velázquez G, Lee BPYH, Lefevre JM, Meyer JY, Philippart D, Robinson DG, Thévenot J, Tsatsia F. The invasive land planarian Platydemus manokwari (Platyhelminthes, Geoplanidae): records from six new localities, including the first in the USA. PeerJ 2015; 3:e1037. [PMID: 26131377 PMCID: PMC4485254 DOI: 10.7717/peerj.1037] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2014] [Accepted: 05/29/2015] [Indexed: 11/24/2022] Open
Abstract
The land planarian Platydemus manokwari de Beauchamp, 1963 or “New Guinea flatworm” is a highly invasive species, mainly in the Pacific area, and recently in Europe (France). We report specimens from six additional countries and territories: New Caledonia (including mainland and two of the Loyalty Islands, Lifou and Maré), Wallis and Futuna Islands, Singapore, Solomon Islands, Puerto Rico, and Florida, USA. We analysed the COI gene (barcoding) in these specimens with two sets of primers and obtained 909 bp long sequences. In addition, specimens collected in Townsville (Australia) were also sequenced. Two haplotypes of the COI sequence, differing by 3.7%, were detected: the “World haplotype” found in France, New Caledonia, French Polynesia, Singapore, Florida and Puerto Rico; and the “Australian haplotype” found in Australia. The only locality with both haplotypes was in the Solomon Islands. The country of origin of Platydemus manokwari is New Guinea, and Australia and the Solomon Islands are the countries closest to New Guinea from which we had specimens. These results suggest that two haplotypes exist in the area of origin of the species, but that only one of the two haplotypes (the “World haplotype”) has, through human agency, been widely dispersed. However, since P. manokwari is now recorded from 22 countries in the world and we have genetic information from only 8 of these, with none from New Guinea, this analysis provides only partial knowledge of the genetic structure of the invasive species. Morphological analysis of specimens from both haplotypes has shown some differences in ratio of the genital structures but did not allow us to interpret the haplotypes as different species. The new reports from Florida and Puerto Rico are firsts for the USA, for the American continent, and the Caribbean. P. manokwari is a known threat for endemic terrestrial molluscs and its presence is a matter of concern. While most of the infected territories reported until now were islands, the newly reported presence of the species in mainland US in Florida should be considered a potential major threat to the whole US and even the Americas.
Collapse
Affiliation(s)
- Jean-Lou Justine
- Institut de Systématique, Évolution, Biodiversité, ISYEB, UMR7205 CNRS, EPHE, MNHN, UPMC, Muséum National d'Histoire Naturelle, Sorbonne Universités , Paris , France
| | - Leigh Winsor
- College of Marine and Environmental Sciences, James Cook University , Townsville , Australia
| | - Patrick Barrière
- Conservatoire d'Espaces Naturels de Nouvelle-Calédonie (CEN NC), Pôle Espèces Envahissantes (PEE) , Koné , New Caledonia
| | - Crispus Fanai
- Biosecurity Solomon Islands, Ministry of Agriculture and Livestock , Honiara , Solomon Islands
| | - Delphine Gey
- Service de Systématique Moléculaire, Muséum National d'Histoire Naturelle , Paris , France
| | | | | | - Benjamin Paul Yi-Hann Lee
- Durrell Institute of Conservation & Ecology, University of Kent , United Kingdom ; National Parks Board , Singapore
| | | | - Jean-Yves Meyer
- Délégation à la Recherche, Gouvernement de la Polynésie française , Papeete, Tahiti , French Polynesia
| | | | - David G Robinson
- USDA APHIS National Malacology Laboratory, Academy of Natural Sciences , Philadelphia, PA , USA
| | - Jessica Thévenot
- Service du Patrimoine Naturel, Muséum National d'Histoire Naturelle , Paris , France
| | - Francis Tsatsia
- Biosecurity Solomon Islands, Ministry of Agriculture and Livestock , Honiara , Solomon Islands
| |
Collapse
|
24
|
Robuchon M, Valero M, Gey D, Le Gall L. How does molecular-assisted identification affect our estimation of α, β and γ biodiversity? An example from understory red seaweeds (Rhodophyta) of Laminaria kelp forests in Brittany, France. Genetica 2015; 143:207-23. [PMID: 25351554 DOI: 10.1007/s10709-014-9796-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2014] [Accepted: 10/15/2014] [Indexed: 12/18/2022]
Abstract
Using two distinct identification methods, one based on morphological characters only and the other combining morphological and molecular characters (integrative identification method), we investigated the differences in the biodiversity patterns of red seaweed communities associated with kelp forests at various spatial scales: the regional diversity of Brittany, France (γ-diversity), the local diversity at different Breton sites (α-diversity) and the differentiation in species diversity and abundances among those sites (β-diversity). To characterise α and β diversities, we conducted an initial survey in winter 2011 at 20 sites belonging to four different sub-regions, with specimens collected from six quadrats of 0.10 m(2) at each site, three in the tidal zone dominated by Laminaria digitata and three in the zone dominated by Laminaria hyperborea. To further characterise the regional diversity, we carried out another survey combining several sampling methods (quadrats and visual census) in different seasons (winter, spring and summer) and different years (2011 and 2012). In all, we collected 1990 specimens that were assigned to 76 taxa with the identification method based on morphological characters and 139 taxa using the integrative method. For γ and α diversity, the use of molecular characters revealed several cases of cryptic diversity and both increased the number of identified taxa and improved their taxonomic resolution. However, the addition of molecular characters for specimen identification only slightly affected estimates of β-diversity.
Collapse
Affiliation(s)
- Marine Robuchon
- Institut de Systématique, Evolution, Biodiversité, UMR 7205 CNRS, EPHE, MNHN, UPMC, Equipe Exploration, Espèces, Evolution, Muséum National d'Histoire Naturelle, Case Postale N° 39, 57 rue Cuvier, 75231, Cedex 05 Paris, France,
| | | | | | | |
Collapse
|
25
|
Pante E, Abdelkrim J, Viricel A, Gey D, France SC, Boisselier MC, Samadi S. Use of RAD sequencing for delimiting species. Heredity (Edinb) 2014; 114:450-9. [PMID: 25407078 DOI: 10.1038/hdy.2014.105] [Citation(s) in RCA: 96] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2014] [Revised: 09/12/2014] [Accepted: 09/16/2014] [Indexed: 11/10/2022] Open
Abstract
RAD-tag sequencing is a promising method for conducting genome-wide evolutionary studies. However, to date, only a handful of studies empirically tested its applicability above the species level. In this communication, we use RAD tags to contribute to the delimitation of species within a diverse genus of deep-sea octocorals, Chrysogorgia, for which few classical genetic markers have proved informative. Previous studies have hypothesized that single mitochondrial haplotypes can be used to delimit Chrysogorgia species. On the basis of two lanes of Illumina sequencing, we inferred phylogenetic relationships among 12 putative species that were delimited using mitochondrial data, comparing two RAD analysis pipelines (Stacks and PyRAD). The number of homologous RAD loci decreased dramatically with increasing divergence, as >70% of loci are lost when comparing specimens separated by two mutations on the 700-nt long mitochondrial phylogeny. Species delimitation hypotheses based on the mitochondrial mtMutS gene are largely supported, as six out of nine putative species represented by more than one colony were recovered as discrete, well-supported clades. Significant genetic structure (correlating with geography) was detected within one putative species, suggesting that individuals characterized by the same mtMutS haplotype may belong to distinct species. Conversely, three mtMutS haplotypes formed one well-supported clade within which no population structure was detected, also suggesting that intraspecific variation exists at mtMutS in Chrysogorgia. Despite an impressive decrease in the number of homologous loci across clades, RAD data helped us to fine-tune our interpretations of classical mitochondrial markers used in octocoral species delimitation, and discover previously undetected diversity.
Collapse
Affiliation(s)
- E Pante
- Laboratoire LIENSs, UMR 7266 CNRS-Université de La Rochelle, La Rochelle, France
| | - J Abdelkrim
- 1] Département Systématique et Evolution, UMS 2700 MNHN-CNRS, SSM, Muséum national d'Histoire naturelle, Paris, France [2] ISYEB-UMR 7205-CNRS, MNHN, UPMC, EPHE, Muséum national d'Histoire naturelle, Sorbonne Universités, Paris, France
| | - A Viricel
- Laboratoire LIENSs, UMR 7266 CNRS-Université de La Rochelle, La Rochelle, France
| | - D Gey
- Département Systématique et Evolution, UMS 2700 MNHN-CNRS, SSM, Muséum national d'Histoire naturelle, Paris, France
| | - S C France
- Department of Biology, University of Louisiana at Lafayette, Lafayette, LA, USA
| | - M C Boisselier
- 1] Département Systématique et Evolution, UMS 2700 MNHN-CNRS, SSM, Muséum national d'Histoire naturelle, Paris, France [2] ISYEB-UMR 7205-CNRS, MNHN, UPMC, EPHE, Muséum national d'Histoire naturelle, Sorbonne Universités, Paris, France
| | - S Samadi
- ISYEB-UMR 7205-CNRS, MNHN, UPMC, EPHE, Muséum national d'Histoire naturelle, Sorbonne Universités, Paris, France
| |
Collapse
|
26
|
Justine JL, Winsor L, Gey D, Gros P, Thévenot J. The invasive New Guinea flatworm Platydemus manokwari in France, the first record for Europe: time for action is now. PeerJ 2014; 2:e297. [PMID: 24688873 PMCID: PMC3961122 DOI: 10.7717/peerj.297] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2014] [Accepted: 02/10/2014] [Indexed: 11/20/2022] Open
Abstract
Non-indigenous terrestrial flatworms (Platyhelminthes) have been recorded in thirteen European countries. They include Bipalium kewense and Dolichoplana striata that are largely restricted to hothouses and may be regarded as non-invasive species. In addition there are species from the southern hemisphere such as the invasive New Zealand flatworm Arthurdendyus triangulatus in the United Kingdom, Eire and the Faroe Islands, the Australian flatworm Australoplana sanguinea alba in Eire and the United Kingdom, and the Australian Blue Garden flatworm Caenoplana coerulea in France, Menorca and the United Kingdom. The United Kingdom has some twelve or more non-indigenous species most of which are Australian and New Zealand species. These species may move to an invasive stage when optimum environmental and other conditions occur, and the flatworms then have the potential to cause economic or environmental harm. In this paper, we report the identification (from morphology and molecular analysis of COI sequences) of non-indigenous terrestrial flatworms found in a hothouse in Caen (France) as the New Guinea flatworm Platydemus manokwari de Beauchamp, 1963 (Platyhelminthes, Continenticola, Geoplanidae, Rhynchodeminae). Platydemus manokwari is among the "100 World's Worst Invader Alien Species". Lists of World geographic records, prey in the field and prey in laboratories of P. manokwari are provided. This species is considered a threat to native snails wherever it is introduced. The recent discovery of P. manokwari in France represents a significant extension of distribution of this Invasive Alien Species from the Indo-Pacific region to Europe. If it escaped the hothouse, the flatworm might survive winters and become established in temperate countries. The existence of this species in France requires an early warning of this incursion to State and European Union authorities, followed by the eradication of the flatworm in its locality, tightening of internal quarantine measures to prevent further spread of the flatworm to and from this site, identifying if possible the likely primary source of the flatworm, and tracing other possible incursions that may have resulted from accidental dispersal of plants and soil from the site.
Collapse
Affiliation(s)
- Jean-Lou Justine
- ISYEB, Institut de Systématique Evolution Biodiversité, UMR7205 CNRS, EPHE, MNHN, UPMC, Muséum National d’Histoire Naturelle, France
| | - Leigh Winsor
- School of Marine and Tropical Biology, James Cook University, Australia
| | - Delphine Gey
- Service de Systématique moléculaire, Muséum National d’Histoire Naturelle, France
| | | | - Jessica Thévenot
- Coordination technique et scientifique de la stratégie nationale relative aux espèces exotiques envahissantes, Service du Patrimoine Naturel, Muséum National d’Histoire Naturelle, France
| |
Collapse
|
27
|
Abstract
Ectoparasites face a daily challenge: to remain attached to their hosts. Polyopisthocotylean monogeneans usually attach to the surface of fish gills using highly specialized structures, the sclerotized clamps. In the original description of the protomicrocotylid species Lethacotyle fijiensis, described 60 years ago, the clamps were considered to be absent but few specimens were available and this observation was later questioned. In addition, genera within the family Protomicrocotylidae have either clamps of the “gastrocotylid” or the “microcotylid” types; this puzzled systematists because these clamp types are characteristic of distinct, major groups. Discovery of another, new, species of the genus Lethacotyle, has allowed us to explore the nature of the attachment structures in protomicrocotylids. Lethacotyle vera n. sp. is described from the gills of the carangid Caranx papuensis off New Caledonia. It is distinguished from Lethacotyle fijiensis, the only other species of the genus, by the length of the male copulatory spines. Sequences of 28S rDNA were used to build a tree, in which Lethacotyle vera grouped with other protomicrocotylids. The identity of the host fish was confirmed with COI barcodes. We observed that protomicrocotylids have specialized structures associated with their attachment organ, such as lateral flaps and transverse striations, which are not known in other monogeneans. We thus hypothesized that the clamps in protomicrocotylids were sequentially lost during evolution, coinciding with the development of other attachment structures. To test the hypothesis, we calculated the surfaces of clamps and body in 120 species of gastrocotylinean monogeneans, based on published descriptions. The ratio of clamp surface: body surface was the lowest in protomicrocotylids. We conclude that clamps in protomicrocotylids are vestigial organs, and that occurrence of “gastrocotylid” and simpler “microcotylid” clamps within the same family are steps in an evolutionary sequence, leading to the absence of these attributes in species of Lethacotyle.
Collapse
Affiliation(s)
- Jean-Lou Justine
- UMR 7138 “Systématique, Adaptation, Évolution”, Muséum National d'Histoire Naturelle, CP 51, Paris, France
- * E-mail:
| | - Chahrazed Rahmouni
- UMR 7138 “Systématique, Adaptation, Évolution”, Muséum National d'Histoire Naturelle, CP 51, Paris, France
| | - Delphine Gey
- UMS 2700 Service de Systématique moléculaire, Muséum National d'Histoire Naturelle, Paris, France
| | - Charlotte Schoelinck
- UMR 7138 “Systématique, Adaptation, Évolution”, Muséum National d'Histoire Naturelle, CP 51, Paris, France
- Molecular Biology, Aquatic Animal Health, Fisheries and Oceans Canada, Moncton, Canada
| | - Eric P. Hoberg
- United States National Parasite Collection, United States Department of Agriculture, Agricultural Research Service, Beltsville, Maryland, United States of America
| |
Collapse
|
28
|
Djafi N, Vergnolle C, Cantrel C, Wietrzyñski W, Delage E, Cochet F, Puyaubert J, Soubigou-Taconnat L, Gey D, Collin S, Balzergue S, Zachowski A, Ruelland E. The Arabidopsis DREB2 genetic pathway is constitutively repressed by basal phosphoinositide-dependent phospholipase C coupled to diacylglycerol kinase. Front Plant Sci 2013; 4:307. [PMID: 23964284 PMCID: PMC3737466 DOI: 10.3389/fpls.2013.00307] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2013] [Accepted: 07/22/2013] [Indexed: 05/02/2023]
Abstract
Phosphoinositide-dependent phospholipases C (PI-PLCs) are activated in response to various stimuli. They utilize substrates provided by type III-Phosphatidylinositol-4 kinases (PI4KIII) to produce inositol triphosphate and diacylglycerol (DAG) that is phosphorylated into phosphatidic acid (PA) by DAG-kinases (DGKs). The roles of PI4KIIIs, PI-PLCs, and DGKs in basal signaling are poorly understood. We investigated the control of gene expression by basal PI-PLC pathway in Arabidopsis thaliana suspension cells. A transcriptome-wide analysis allowed the identification of genes whose expression was altered by edelfosine, 30 μM wortmannin, or R59022, inhibitors of PI-PLCs, PI4KIIIs, and DGKs, respectively. We found that a gene responsive to one of these molecules is more likely to be similarly regulated by the other two inhibitors. The common action of these agents is to inhibit PA formation, showing that basal PI-PLCs act, in part, on gene expression through their coupling to DGKs. Amongst the genes up-regulated in presence of the inhibitors, were some DREB2 genes, in suspension cells and in seedlings. The DREB2 genes encode transcription factors with major roles in responses to environmental stresses, including dehydration. They bind to C-repeat motifs, known as Drought-Responsive Elements that are indeed enriched in the promoters of genes up-regulated by PI-PLC pathway inhibitors. PA can also be produced by phospholipases D (PLDs). We show that the DREB2 genes that are up-regulated by PI-PLC inhibitors are positively or negatively regulated, or indifferent, to PLD basal activity. Our data show that the DREB2 genetic pathway is constitutively repressed in resting conditions and that DGK coupled to PI-PLC is active in this process, in suspension cells and seedlings. We discuss how this basal negative regulation of DREB2 genes is compatible with their stress-triggered positive regulation.
Collapse
Affiliation(s)
- Nabila Djafi
- Physiologie Cellulaire et Moléculaire des Plantes, CNRS EAC7180Paris, France
- Physiologie Cellulaire et Moléculaire des Plantes, UPMC-Univ Paris06 UR5Paris, France
| | - Chantal Vergnolle
- Physiologie Cellulaire et Moléculaire des Plantes, CNRS EAC7180Paris, France
- Physiologie Cellulaire et Moléculaire des Plantes, UPMC-Univ Paris06 UR5Paris, France
| | - Catherine Cantrel
- Physiologie Cellulaire et Moléculaire des Plantes, CNRS EAC7180Paris, France
- Physiologie Cellulaire et Moléculaire des Plantes, UPMC-Univ Paris06 UR5Paris, France
| | | | - Elise Delage
- Physiologie Cellulaire et Moléculaire des Plantes, CNRS EAC7180Paris, France
- Physiologie Cellulaire et Moléculaire des Plantes, UPMC-Univ Paris06 UR5Paris, France
| | - Françoise Cochet
- Physiologie Cellulaire et Moléculaire des Plantes, CNRS EAC7180Paris, France
- Physiologie Cellulaire et Moléculaire des Plantes, UPMC-Univ Paris06 UR5Paris, France
| | - Juliette Puyaubert
- Physiologie Cellulaire et Moléculaire des Plantes, CNRS EAC7180Paris, France
- Physiologie Cellulaire et Moléculaire des Plantes, UPMC-Univ Paris06 UR5Paris, France
| | - Ludivine Soubigou-Taconnat
- Unité de Recherche en Biologie Végétale, UMR INRA 1165, Université d'Evry Val d'Essonne, ERL CNRS 8196Evry Cedex, France
| | - Delphine Gey
- Unité de Recherche en Biologie Végétale, UMR INRA 1165, Université d'Evry Val d'Essonne, ERL CNRS 8196Evry Cedex, France
| | - Sylvie Collin
- Physiologie Cellulaire et Moléculaire des Plantes, CNRS EAC7180Paris, France
- Physiologie Cellulaire et Moléculaire des Plantes, UPMC-Univ Paris06 UR5Paris, France
| | - Sandrine Balzergue
- Unité de Recherche en Biologie Végétale, UMR INRA 1165, Université d'Evry Val d'Essonne, ERL CNRS 8196Evry Cedex, France
| | - Alain Zachowski
- Physiologie Cellulaire et Moléculaire des Plantes, CNRS EAC7180Paris, France
- Physiologie Cellulaire et Moléculaire des Plantes, UPMC-Univ Paris06 UR5Paris, France
| | - Eric Ruelland
- Physiologie Cellulaire et Moléculaire des Plantes, CNRS EAC7180Paris, France
- Physiologie Cellulaire et Moléculaire des Plantes, UPMC-Univ Paris06 UR5Paris, France
| |
Collapse
|
29
|
Bouyer D, Roudier F, Heese M, Andersen ED, Gey D, Nowack MK, Goodrich J, Renou JP, Grini PE, Colot V, Schnittger A. Polycomb repressive complex 2 controls the embryo-to-seedling phase transition. PLoS Genet 2011; 7:e1002014. [PMID: 21423668 PMCID: PMC3053347 DOI: 10.1371/journal.pgen.1002014] [Citation(s) in RCA: 268] [Impact Index Per Article: 20.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2010] [Accepted: 01/11/2011] [Indexed: 11/18/2022] Open
Abstract
Polycomb repressive complex 2 (PRC2) is a key regulator of epigenetic states catalyzing histone H3 lysine 27 trimethylation (H3K27me3), a repressive chromatin mark. PRC2 composition is conserved from humans to plants, but the function of PRC2 during the early stage of plant life is unclear beyond the fact that it is required for the development of endosperm, a nutritive tissue that supports embryo growth. Circumventing the requirement of PRC2 in endosperm allowed us to generate viable homozygous null mutants for FERTILIZATION INDEPENDENT ENDOSPERM (FIE), which is the single Arabidopsis homolog of Extra Sex Combs, an indispensable component of Drosophila and mammalian PRC2. Here we show that H3K27me3 deposition is abolished genome-wide in fie mutants demonstrating the essential function of PRC2 in placing this mark in plants as in animals. In contrast to animals, we find that PRC2 function is not required for initial body plan formation in Arabidopsis. Rather, our results show that fie mutant seeds exhibit enhanced dormancy and germination defects, indicating a deficiency in terminating the embryonic phase. After germination, fie mutant seedlings switch to generative development that is not sustained, giving rise to neoplastic, callus-like structures. Further genome-wide studies showed that only a fraction of PRC2 targets are transcriptionally activated in fie seedlings and that this activation is accompanied in only a few cases with deposition of H3K4me3, a mark associated with gene activity and considered to act antagonistically to H3K27me3. Up-regulated PRC2 target genes were found to act at different hierarchical levels from transcriptional master regulators to a wide range of downstream targets. Collectively, our findings demonstrate that PRC2-mediated regulation represents a robust system controlling developmental phase transitions, not only from vegetative phase to flowering but also especially from embryonic phase to the seedling stage.
Collapse
Affiliation(s)
- Daniel Bouyer
- Department of Molecular Mechanisms of Phenotypic Plasticity, Institut de Biologie Moléculaire des Plantes du CNRS, Université de Strasbourg, Strasbourg, France
| | - Francois Roudier
- Institut de Biologie de l'Ecole Normale Supérieure, CNRS UMR 8197–INSERM U 1024, Paris, France
| | - Maren Heese
- Department of Molecular Mechanisms of Phenotypic Plasticity, Institut de Biologie Moléculaire des Plantes du CNRS, Université de Strasbourg, Strasbourg, France
| | - Ellen D. Andersen
- Department of Molecular Biosciences, University of Oslo, Oslo, Norway
| | - Delphine Gey
- Department of Plant Genomics Research, CNRS/INRA, Evry, France
| | - Moritz K. Nowack
- Department of Plant Systems Biology, VIB, Gent, Belgium
- Department of Plant Biotechnology and Genetics, Ghent University, Gent, Belgium
| | - Justin Goodrich
- Institute of Molecular Plant Science, University of Edinburgh, Edinburgh, United Kingdom
| | | | - Paul E. Grini
- Department of Molecular Biosciences, University of Oslo, Oslo, Norway
| | - Vincent Colot
- Institut de Biologie de l'Ecole Normale Supérieure, CNRS UMR 8197–INSERM U 1024, Paris, France
| | - Arp Schnittger
- Department of Molecular Mechanisms of Phenotypic Plasticity, Institut de Biologie Moléculaire des Plantes du CNRS, Université de Strasbourg, Strasbourg, France
- * E-mail:
| |
Collapse
|
30
|
Hartmann M, Gey D. [Syphilis--diagnosis, treatment and characteristics in HIV-infected patients]. MMW Fortschr Med 2004; 146 Spec No 1:39-41. [PMID: 15373045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/30/2023]
Abstract
Venereal syphilis is a chronic cyclic infectious disease that, if untreated, runs a decades-long course. The responsible pathogen is Treponema pallidum. Clinically, a differentiation is made into early (primary) syphilis (up to 1 year following infection, syphilis I), during which disease manifestations are localized, secondary syphilis (syphilis II) with generalized manifestations, and late, or tertiary syphilis (syphilis III). Clinical manifestations that have been observed in HIV patients are syphilis maligna and neurosyphilis. Treatment of choice continues to be penicillin. Instead of only a single injection of penicillin, HIV infected patients with early syphilis should be given three injections, with an interval of 1 week between them, to prevent the development of neurosyphilis.
Collapse
|
31
|
Gey D, Lüer S, Stephan M, Hartmann M. [Noncompliance or too much garlic? When phytotherapy drugs interact with HIV therapy]. MMW Fortschr Med 2003; 145:38-41. [PMID: 12958776] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/04/2023]
Affiliation(s)
- D Gey
- Abt. für Dermatologie, Universität Heidelberg.
| | | | | | | |
Collapse
|
32
|
Gey D, Ellwanger B, Stephan M, Lüer S, Hartmann M. [HIV patients in general practice. What should be noted?]. MMW Fortschr Med 2003; 145:32-6. [PMID: 12958775] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/04/2023]
Affiliation(s)
- D Gey
- Abt. für Dermatologie, Universität Heidelberg
| | | | | | | | | |
Collapse
|