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Exploring the interplay between small and large scales movements in a neotropical small mammal. MOVEMENT ECOLOGY 2024; 12:23. [PMID: 38528635 DOI: 10.1186/s40462-024-00465-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2023] [Accepted: 03/12/2024] [Indexed: 03/27/2024]
Abstract
We record and analyze the movement patterns of the marsupial Didelphis aurita at different temporal scales. Animals trajectories are collected at a daily scale by using spool-and-line techniques and, with the help of radio-tracking devices, animals traveled distances are estimated at intervals of weeks. Small-scale movements are well described by truncated Lévy flight, while large-scale movements produce a distribution of distances which is compatible with a Brownian motion. A model of the movement behavior of these animals, based on a truncated Lévy flight calibrated on the small scale data, converges towards a Brownian behavior after a short time interval of the order of 1 week. These results show that whether Lévy flight or Brownian motion behaviors apply, will depend on the scale of aggregation of the animals paths. In this specific case, as the effect of the rude truncation present in the daily data generates a fast convergence towards Brownian behaviors, Lévy flights become of scarce interest for describing the local dispersion properties of these animals, which result well approximated by a normal diffusion process and not a fast, anomalous one. Interestingly, we are able to describe two movement phases as the consequence of a statistical effect generated by aggregation, without the necessity of introducing ecological constraints or mechanisms operating at different spatio-temporal scales. This result is of general interest, as it can be a key element for describing movement phenomenology at distinct spatio-temporal scales across different taxa and in a variety of systems.
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Inferring interactions in multispecies communities: The cryptocurrency market case. PLoS One 2023; 18:e0291130. [PMID: 37713398 PMCID: PMC10503730 DOI: 10.1371/journal.pone.0291130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2023] [Accepted: 08/22/2023] [Indexed: 09/17/2023] Open
Abstract
We introduce a general framework for empirically detecting interactions in communities of entities characterized by different features. This approach is inspired by ideas and methods coming from ecology and finance and is applied to a large dataset extracted from the cryptocurrency market. The inter-species interaction network is constructed using a similarity measure based on the log-growth rate of the capitalizations of the cryptocurrency market. The detected relevant interactions are only of the cooperative type, and the network presents a well-defined clustered structure, with two practically disjointed communities. The first one is made up of highly capitalized cryptocurrencies that are tightly connected, and the second one is made up of small-cap cryptocurrencies that are loosely linked. This approach based on the log-growth rate, instead of the conventional price returns, seems to enhance the discriminative potential of the network representation, highlighting a modular structure with compact communities and a rich hierarchy that can be ascribed to different functional groups. In fact, inside the community of the more capitalized coins, we can distinguish between clusters composed of some of the more popular first-generation cryptocurrencies, and clusters made up of second-generation cryptocurrencies. Alternatively, we construct the network of directed interactions by using the partial correlations of the log-growth rate. This network displays the important centrality of Bitcoin, discloses a core cluster containing a branch with the most capitalized first-generation cryptocurrencies, and emphasizes interesting correspondences between the detected direct pair interactions and specific features of the related currencies. As risk strongly depends on the interaction structure of the cryptocurrency system, these results can be useful for assisting in hedging risks. The inferred network topology suggests fewer probable widespread contagions. Moreover, as the riskier coins do not strongly interact with the others, it is more difficult that they can drive the market to more fragile states.
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3
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Comment on "Universal and Accessible Entropy Estimation Using a Compression Algorithm". PHYSICAL REVIEW LETTERS 2022; 129:029801. [PMID: 35867442 DOI: 10.1103/physrevlett.129.029801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2021] [Accepted: 06/10/2022] [Indexed: 06/15/2023]
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4
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Entropy estimation in bidimensional sequences. Phys Rev E 2022; 105:054116. [PMID: 35706216 DOI: 10.1103/physreve.105.054116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2022] [Accepted: 04/15/2022] [Indexed: 06/15/2023]
Abstract
We investigate the performance of entropy estimation methods, based either on block entropies or compression approaches, in the case of bidimensional sequences. We introduce a validation data set made of images produced by a large number of different natural systems, in the vast majority characterized by long-range correlations, which produce a large spectrum of entropies. Results show that the framework based on lossless compressors applied to the one-dimensional projection of the considered data set leads to poor estimates. This is because higher dimensional correlations are lost in the projection operation. The adoption of compression methods which do not introduce dimensionality reduction improves the performance of this approach. By far, the best estimation of the asymptotic entropy is generated by the faster convergence of the traditional block-entropies method. As a by-product of our analysis, we show how a specific compressor method can be used as a potentially interesting technique for automatic detection of symmetries in textures and images.
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Testing macroecological theories in cryptocurrency market: neutral models cannot describe diversity patterns and their variation. ROYAL SOCIETY OPEN SCIENCE 2022; 9:212005. [PMID: 35425637 PMCID: PMC9006011 DOI: 10.1098/rsos.212005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/28/2021] [Accepted: 03/10/2022] [Indexed: 05/03/2023]
Abstract
We develop an analysis of the cryptocurrency market borrowing methods and concepts from ecology. This approach makes it possible to identify specific diversity patterns and their variation, in close analogy with ecological systems, and to characterize the cryptocurrency market in an effective way. At the same time, it shows how non-biological systems can have an important role in contrasting different ecological theories and in testing the use of neutral models. The study of the cryptocurrencies abundance distribution and the evolution of the community structure strongly indicates that these statistical patterns are not consistent with neutrality. In particular, the necessity to increase the temporal change in community composition when the number of cryptocurrencies grows, suggests that their interactions are not necessarily weak. The analysis of the intraspecific and interspecific interdependency supports this fact and demonstrates the presence of a market sector influenced by mutualistic relations. These latest findings challenge the hypothesis of weakly interacting symmetric species, the postulate at the heart of neutral models.
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6
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Entropy and hierarchical clustering: Characterizing the morphology of the urban fabric in different spatial cultures. CHAOS (WOODBURY, N.Y.) 2021; 31:113138. [PMID: 34881605 DOI: 10.1063/5.0069258] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Accepted: 11/03/2021] [Indexed: 06/13/2023]
Abstract
In this work, we develop a general method for estimating the Shannon entropy of a bidimensional sequence based on the extrapolation of block entropies. We apply this method to analyze the spatial configurations of cities of different cultures and regions of the world. Findings suggest that this approach can identify similarities between cities, generating accurate results for recognizing and classifying different urban morphologies. The hierarchical clustering analysis based on this metric also opens up new questions about the possibility that urban form can embody characteristics related to different cultural identities, historical processes, and geographical regions.
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7
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Polarization inhibits the phase transition of Axelrod's model. Phys Rev E 2021; 103:062306. [PMID: 34271733 DOI: 10.1103/physreve.103.062306] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2021] [Accepted: 05/26/2021] [Indexed: 11/07/2022]
Abstract
We study the effect of polarization in Axelrod's model of cultural dissemination. This is done through the introduction of a cultural feature that takes only two values, while the other features can present a larger number of possible traits. Our numerical results and mean-field approximations show that polarization reduces the characteristic phase transition of the original model to a finite-size effect, since at the thermodynamic limit only the ordered phase is present. Furthermore, for finite system sizes, the stationary state depends on the percolation threshold of the network where the model is implemented: a polarized phase is obtained for percolation thresholds below 1/2, and a fragmented multicultural one otherwise.
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Discontinuous transitions can survive to quenched disorder in a two-dimensional nonequilibrium system. Phys Rev E 2020; 101:022112. [PMID: 32168664 DOI: 10.1103/physreve.101.022112] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2019] [Accepted: 01/23/2020] [Indexed: 06/10/2023]
Abstract
We explore the effects that quenched disorder has on discontinuous nonequilibrium phase transitions into absorbing states. We focus our analysis on the naming game model, a nonequilibrium low-dimensional system with different absorbing states. The results obtained by means of the finite-size scaling analysis and from the study of the temporal dynamics of the density of active sites near the transition point evidence that the spatial quenched disorder does not destroy the discontinuous transition.
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Analyzing a networked social algorithm for collective selection of representative committees. PLoS One 2019; 14:e0222945. [PMID: 31557209 PMCID: PMC6763197 DOI: 10.1371/journal.pone.0222945] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2019] [Accepted: 09/10/2019] [Indexed: 11/18/2022] Open
Abstract
A recent work (Hernández, et al., 2018) introduced a networked voting rule supported by a trust-based social network, where indications of possible representatives were based on individuals opinions. Individual contributions went beyond a simple vote-counting and were based on proxy voting. This mechanism selects committees with high levels of representativeness, weakening the possibility of patronage relations. By incorporating the integrity of individuals and its perception, we here address the question of the resulting committee’s trustability. Our results show that this voting rule provides sufficiently small committees with high levels of representativeness and integrity. Furthermore, the voting system displays robustness to strategic and untruthful application of the voting algorithm.
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Lévy like patterns in the small-scale movements of marsupials in an unfamiliar and risky environment. Sci Rep 2019; 9:2737. [PMID: 30804363 PMCID: PMC6389917 DOI: 10.1038/s41598-019-39045-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2017] [Accepted: 08/28/2018] [Indexed: 11/14/2022] Open
Abstract
We investigate the movement patterns of three different Neotropical marsupials in an unfamiliar and risky environment. Animals are released in a matrix from which they try to reach a patch of forest. Their movements, performed on a small spacial scale, are best approximated by Lévy flights. Patterns of oriented and non-oriented individuals - with forest patches within or beyond their perceptual range - differ only slightly in the value of their exponents. These facts suggest that, for these species, the appearance of Lévy flights is the product of animals innate behaviour that emerges spontaneously, as a neutral characteristic proper of a default movement mode for alerted animals.
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Cities, from Information to Interaction. ENTROPY 2018; 20:e20110834. [PMID: 33266557 PMCID: PMC7512396 DOI: 10.3390/e20110834] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/23/2018] [Revised: 10/08/2018] [Accepted: 10/26/2018] [Indexed: 11/16/2022]
Abstract
From physics to the social sciences, information is now seen as a fundamental component of reality. However, a form of information seems still underestimated, perhaps precisely because it is so pervasive that we take it for granted: the information encoded in the very environment we live in. We still do not fully understand how information takes the form of cities, and how our minds deal with it in order to learn about the world, make daily decisions, and take part in the complex system of interactions we create as we live together. This paper addresses three related problems that need to be solved if we are to understand the role of environmental information: (1) the physical problem: how can we preserve information in the built environment? (2) The semantic problem: how do we make environmental information meaningful? and (3) the pragmatic problem: how do we use environmental information in our daily lives? Attempting to devise a solution to these problems, we introduce a three-layered model of information in cities, namely environmental information in physical space, environmental information in semantic space, and the information enacted by interacting agents. We propose forms of estimating entropy in these different layers, and apply these measures to emblematic urban cases and simulated scenarios. Our results suggest that ordered spatial structures and diverse land use patterns encode information, and that aspects of physical and semantic information affect coordination in interaction systems.
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A networked voting rule for democratic representation. ROYAL SOCIETY OPEN SCIENCE 2018; 5:172265. [PMID: 29657817 PMCID: PMC5882741 DOI: 10.1098/rsos.172265] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/18/2017] [Accepted: 01/31/2018] [Indexed: 06/08/2023]
Abstract
We introduce a general framework for exploring the problem of selecting a committee of representatives with the aim of studying a networked voting rule based on a decentralized large-scale platform, which can assure a strong accountability of the elected. The results of our simulations suggest that this algorithm-based approach is able to obtain a high representativeness for relatively small committees, performing even better than a classical voting rule based on a closed list of candidates. We show that a general relation between committee size and representatives exists in the form of an inverse square root law and that the normalized committee size approximately scales with the inverse of the community size, allowing the scalability to very large populations. These findings are not strongly influenced by the different networks used to describe the individuals' interactions, except for the presence of few individuals with very high connectivity which can have a marginal negative effect in the committee selection process.
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Finite-size scaling analysis of a nonequilibrium phase transition in the naming game model. Phys Rev E 2016; 94:052308. [PMID: 27967000 DOI: 10.1103/physreve.94.052308] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2016] [Indexed: 06/06/2023]
Abstract
We realize an extensive numerical study of the naming game model with a noise term which accounts for perturbations. This model displays a nonequilibrium phase transition between an absorbing ordered consensus state, which occurs for small noise, and a disordered phase with fragmented clusters characterized by heterogeneous memories, which emerges at strong noise levels. The nature of the phase transition is studied by means of a finite-size scaling analysis of the moments. We observe a scaling behavior typical of a discontinuous transition and we are able to estimate the thermodynamic limit. The scaling behavior of the clusters size seems also compatible with this kind of transition.
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Detecting and modelling delayed density-dependence in abundance time series of a small mammal (Didelphis aurita). Sci Rep 2016; 6:19553. [PMID: 26865413 PMCID: PMC4750062 DOI: 10.1038/srep19553] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2015] [Accepted: 12/01/2015] [Indexed: 11/09/2022] Open
Abstract
We study the population size time series of a Neotropical small mammal with the intent of detecting and modelling population regulation processes generated by density-dependent factors and their possible delayed effects. The application of analysis tools based on principles of statistical generality are nowadays a common practice for describing these phenomena, but, in general, they are more capable of generating clear diagnosis rather than granting valuable modelling. For this reason, in our approach, we detect the principal temporal structures on the bases of different correlation measures, and from these results we build an ad-hoc minimalist autoregressive model that incorporates the main drivers of the dynamics. Surprisingly our model is capable of reproducing very well the time patterns of the empirical series and, for the first time, clearly outlines the importance of the time of attaining sexual maturity as a central temporal scale for the dynamics of this species. In fact, an important advantage of this analysis scheme is that all the model parameters are directly biologically interpretable and potentially measurable, allowing a consistency check between model outputs and independent measurements.
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15
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Abstract
We introduce a multi-agent model for exploring how selection of neighbours determines some aspects of order and cohesion in swarms. The model algorithm states that every agents' motion seeks for an optimal distance from the nearest topological neighbour encompassed in a limited attention field. Despite the great simplicity of the implementation, varying the amplitude of the attention landscape, swarms pass from cohesive and regular structures towards fragmented and irregular configurations. Interestingly, this movement rule is an ideal candidate for implementing the selfish herd hypothesis which explains aggregation of alarmed group of social animals.
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Viability of an elementary syntactic structure in a population playing naming games. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 86:026107. [PMID: 23005825 DOI: 10.1103/physreve.86.026107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2012] [Indexed: 06/01/2023]
Abstract
We explore how the social dynamics of communication and learning can bring about the rise of a syntactic communication in a population of speakers. Our study is developed starting from a version of the Naming Game model in which an elementary syntactic structure is introduced. This analysis shows how the transition from nonsyntactic to syntactic communication is socially favored in communities which need to exchange a large number of concepts.
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Animal-assisted interventions in internal and rehabilitation medicine: a review of the recent literature. Panminerva Med 2011; 53:129-136. [PMID: 21659977] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
While conventional wisdom has always affirmed the value of animals in promoting human well-being, only recently has their therapeutic role in medicine become the focus of dedicated research. Therapeutic modalities that use animals as a tool for improving the physical, emotional, cognitive and/or social functioning of humans are called animal-assisted interventions (AAI), and are classified into: animal-assisted activities (AAA); animal-assisted therapy (AAT); and service animal programs (SAP). The aim of this review is to analyze the papers published between 2001 and 2010 in the most influential medical journals dealing with AAI, and discuss their findings in the light of what may be of interest for internal medicine and rehabilitation. A total of 35 articles met the strict inclusion criteria for this review: 18 papers dealing with AAA, 8 with AAT, and 9 with SAP. The therapeutic outcomes associated with AAA are: enhancement of socialization; reduction of stress, anxiety and loneliness; improvement in mood and general well-being; and development of leisure/recreation skills. Regarding AAT, horses are often used as a complementary strategy to facilitate the normalization of muscle tone and improve motor skills in children with cerebral palsy and persons with lower limb spasticity. Finally, most SAP utilize dogs, that assist people with various disabilities in performing everyday activities, thus reducing their dependence on other persons. Further studies are needed to better define the fields and programs for the therapeutic use of animals and to increase their utilization in medicine, as a promising, complementary and natural means to improve both functional autonomy and quality of life.
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Consequence of reputation in an open-ended naming game. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2008; 78:046108. [PMID: 18999494 DOI: 10.1103/physreve.78.046108] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2008] [Revised: 08/06/2008] [Indexed: 05/27/2023]
Abstract
We study a modified version of the naming game, a recently introduced model which describes how shared vocabulary can emerge spontaneously in a population without any central control. In particular, we introduce a mechanism that allows a continuous interchange with the external inventory of words. A playing strategy, influenced by the hierarchical structure that individuals' reputation defines in the community, is implemented. We analyze how these features influence the convergence times, the cognitive efforts of the agents, and the scaling behavior in memory and time.
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Individual-based model with global competition interaction: fluctuation effects in pattern formation. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2008; 77:021914. [PMID: 18352058 DOI: 10.1103/physreve.77.021914] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2007] [Revised: 11/16/2007] [Indexed: 05/26/2023]
Abstract
We present some numerical results obtained from a simple individual-based model that describes clustering of organisms caused by competition. Our aim is to show that, even when a deterministic description developed for continuum models predicts no pattern formation, an individual-based model displays well-defined patterns, as a consequence of fluctuation effects caused by the discrete nature of the interacting agents.
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