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Chen GH, Dai YC, Hsieh SC, Tsai JJ, Sy AK, Jiz M, Pedroso C, Brites C, Netto EM, Kanki PJ, Saunders DRD, Vanlandingham DL, Higgs S, Huang YJS, Wang WK. Detection of anti-premembrane antibody as a specific marker of four flavivirus serocomplexes and its application to serosurveillance in endemic regions. Emerg Microbes Infect 2024; 13:2301666. [PMID: 38163752 PMCID: PMC10810658 DOI: 10.1080/22221751.2023.2301666] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Accepted: 12/30/2023] [Indexed: 01/03/2024]
Abstract
In the past few decades, several emerging/re-emerging mosquito-borne flaviviruses have resulted in disease outbreaks of public health concern in the tropics and subtropics. Due to cross-reactivities of antibodies recognizing the envelope protein of different flaviviruses, serosurveillance remains a challenge. Previously we reported that anti-premembrane (prM) antibody can discriminate between three flavivirus infections by Western blot analysis. In this study, we aimed to develop a serological assay that can discriminate infection or exposure with flaviviruses from four serocomplexes, including dengue (DENV), Zika (ZIKV), West Nile (WNV) and yellow fever (YFV) viruses, and explore its application for serosurveillance in flavivirus-endemic countries. We employed Western blot analysis including antigens of six flaviviruses (DENV1, 2 and 4, WNV, ZIKV and YFV) from four serocomplexes. We tested serum samples from YF-17D vaccinees, and from DENV, ZIKV and WNV panels that had been confirmed by RT-PCR or by neutralization assays. The overall sensitivity/specificity of anti-prM antibodies for DENV, ZIKV, WNV, and YFV infections/exposure were 91.7%/96.4%, 91.7%/99.2%, 88.9%/98.3%, and 91.3%/92.5%, respectively. When testing 48 samples from Brazil, we identified multiple flavivirus infections/exposure including DENV and ZIKV, DENV and YFV, and DENV, ZIKV and YFV. When testing 50 samples from the Philippines, we detected DENV, ZIKV, and DENV and ZIKV infections with a ZIKV seroprevalence rate of 10%, which was consistent with reports of low-level circulation of ZIKV in Asia. Together, these findings suggest that anti-prM antibody is a flavivirus serocomplex-specific marker and can be employed to delineate four flavivirus infections/exposure in regions where multiple flaviviruses co-circulate.
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Affiliation(s)
- Guan-Hua Chen
- Department of Tropical Medicine, Medical Microbiology and Pharmacology, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, USA
| | - Yu-Ching Dai
- Department of Tropical Medicine, Medical Microbiology and Pharmacology, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, USA
| | - Szu-Chia Hsieh
- Department of Tropical Medicine, Medical Microbiology and Pharmacology, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, USA
| | - Jih-Jin Tsai
- Tropical Medicine Center, Kaohsiung Medical University Hospital, Kaohsiung, Taiwan
- Division of Infectious Diseases, Department of Internal Medicine, Kaohsiung Medical University Hospital, Kaohsiung, Taiwan
- School of Medicine, College of Medicine, Kaohsiung Medical University, Kaohsiung, Taiwan
| | - Ava Kristy Sy
- National Reference Laboratory for Dengue and Other Arbovirus, Virology Department, Research Institute for Tropical Medicine, Muntinlupa City, Philippines
| | - Mario Jiz
- Immunology Department, Research Institute for Tropical Medicine, Muntinlupa City, Philippines
| | - Celia Pedroso
- LAPI-Laboratório de Pesquisa em Infectologia-School of Medicine, Federal University of Bahia, Salvador, Brazil
| | - Carlos Brites
- LAPI-Laboratório de Pesquisa em Infectologia-School of Medicine, Federal University of Bahia, Salvador, Brazil
| | - Eduardo Martins Netto
- LAPI-Laboratório de Pesquisa em Infectologia-School of Medicine, Federal University of Bahia, Salvador, Brazil
| | - Phyllis J. Kanki
- Department of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, MA, USA
| | | | - Dana L. Vanlandingham
- Biosecurity Research Institute and Department of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS, USA
| | - Stephen Higgs
- Biosecurity Research Institute and Department of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS, USA
| | - Yan-Jang S. Huang
- Biosecurity Research Institute and Department of Diagnostic Medicine/Pathobiology, College of Veterinary Medicine, Kansas State University, Manhattan, KS, USA
| | - Wei-Kung Wang
- Department of Tropical Medicine, Medical Microbiology and Pharmacology, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, USA
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Tamtaji M, Kim MG, Wang J, Galligan PR, Zhu H, Hung FF, Xu Z, Zhu Y, Luo Z, Goddard WA, Chen G. A High-Entropy Single-Atom Catalyst Toward Oxygen Reduction Reaction in Acidic and Alkaline Conditions. Adv Sci (Weinh) 2024:e2309883. [PMID: 38687196 DOI: 10.1002/advs.202309883] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2023] [Revised: 02/21/2024] [Indexed: 05/02/2024]
Abstract
The design of high-entropy single-atom catalysts (HESAC) with 5.2 times higher entropy compared to single-atom catalysts (SAC) is proposed, by using four different metals (FeCoNiRu-HESAC) for oxygen reduction reaction (ORR). Fe active sites with intermetallic distances of 6.1 Å exhibit a low ORR overpotential of 0.44 V, which originates from weakening the adsorption of OH intermediates. Based on density functional theory (DFT) findings, the FeCoNiRu-HESAC with a nitrogen-doped sample were synthesized. The atomic structures are confirmed with X-ray photoelectron spectroscopy (XPS), X-ray absorption (XAS), and scanning transmission electron microscopy (STEM). The predicted high catalytic activity is experimentally verified, finding that FeCoNiRu-HESAC has overpotentials of 0.41 and 0.37 V with Tafel slopes of 101 and 210 mVdec-1 at the current density of 1 mA cm-2 and the kinetic current densities of 8.2 and 5.3 mA cm-2, respectively, in acidic and alkaline electrolytes. These results are comparable with Pt/C. The FeCoNiRu-HESAC is used for Zinc-air battery applications with an open circuit potential of 1.39 V and power density of 0.16 W cm-2. Therefore, a strategy guided by DFT is provided for the rational design of HESAC which can be replaced with high-cost Pt catalysts toward ORR and beyond.
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Affiliation(s)
- Mohsen Tamtaji
- Hong Kong Quantum AI Lab Limited, Pak Shek Kok, Hong Kong SAR, 999077, China
| | - Min Gyu Kim
- Beamline Research Division, Pohang Accelerator Laboratory (PAL), Pohang University of Science and Technology, Pohang, 37673, Republic of Korea
| | - Jun Wang
- Department of Chemical and Biological Engineering, Guangdong-Hong Kong-Macao Joint Laboratory for Intelligent Micro-Nano Optoelectronic Technology, William Mong Institute of Nano Science and Technology, and Hong Kong Branch of Chinese National Engineering Research Center for Tissue Restoration and Reconstruction, The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong, Kowloon, 999077, P.R. China
| | - Patrick Ryan Galligan
- Department of Chemical and Biological Engineering, Guangdong-Hong Kong-Macao Joint Laboratory for Intelligent Micro-Nano Optoelectronic Technology, William Mong Institute of Nano Science and Technology, and Hong Kong Branch of Chinese National Engineering Research Center for Tissue Restoration and Reconstruction, The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong, Kowloon, 999077, P.R. China
| | - Haoyu Zhu
- Hong Kong Quantum AI Lab Limited, Pak Shek Kok, Hong Kong SAR, 999077, China
| | - Faan-Fung Hung
- Hong Kong Quantum AI Lab Limited, Pak Shek Kok, Hong Kong SAR, 999077, China
| | - Zhihang Xu
- Department of Applied Physics, Research Institute for Smart Energy, The Hong Kong Polytechnic University, Hong Kong, 999077, China
| | - Ye Zhu
- Department of Applied Physics, Research Institute for Smart Energy, The Hong Kong Polytechnic University, Hong Kong, 999077, China
| | - Zhengtang Luo
- Department of Chemical and Biological Engineering, Guangdong-Hong Kong-Macao Joint Laboratory for Intelligent Micro-Nano Optoelectronic Technology, William Mong Institute of Nano Science and Technology, and Hong Kong Branch of Chinese National Engineering Research Center for Tissue Restoration and Reconstruction, The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong, Kowloon, 999077, P.R. China
| | - William A Goddard
- Materials and Process Simulation Center (MSC), MC 139-74, California Institute of Technology, Pasadena, CA, 91125, USA
| | - GuanHua Chen
- Hong Kong Quantum AI Lab Limited, Pak Shek Kok, Hong Kong SAR, 999077, China
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, 999077, China
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Yang Q, Yi SH, Fu BS, Zhang T, Zeng KN, Feng X, Yao J, Tang H, Li H, Zhang J, Zhang YC, Yi HM, Lyu HJ, Liu JR, Luo GJ, Ge M, Yao WF, Ren FF, Zhuo JF, Luo H, Zhu LP, Ren J, Lyu Y, Wang KX, Liu W, Chen GH, Yang Y. [Clinical application of split liver transplantation: a single center report of 203 cases]. Zhonghua Wai Ke Za Zhi 2024; 62:324-330. [PMID: 38432674 DOI: 10.3760/cma.j.cn112139-20231225-00297] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Subscribe] [Scholar Register] [Indexed: 03/05/2024]
Abstract
Objective: To investigate the safety and therapeutic effect of split liver transplantation (SLT) in clinical application. Methods: This is a retrospective case-series study. The clinical data of 203 consecutive SLT, 79 living donor liver transplantation (LDLT) and 1 298 whole liver transplantation (WLT) performed at the Third Affiliated Hospital of Sun Yat-sen University from July 2014 to July 2023 were retrospectively analyzed. Two hundred and three SLT liver grafts were obtained from 109 donors. One hundred and twenty-seven grafts were generated by in vitro splitting and 76 grafts were generated by in vivo splitting. There were 90 adult recipients and 113 pediatric recipients. According to time, SLT patients were divided into two groups: the early SLT group (40 cases, from July 2014 to December 2017) and the mature SLT technology group (163 cases, from January 2018 to July 2023). The survival of each group was analyzed and the main factors affecting the survival rate of SLT were analyzed. The Kaplan-Meier method and Log-rank test were used for survival analysis. Results: The cumulative survival rates at 1-, 3-, and 5-year were 74.58%, 71.47%, and 71.47% in the early SLT group, and 88.03%, 87.23%, and 87.23% in the mature SLT group, respectively. Survival rates in the mature SLT group were significantly higher than those in the early SLT group (χ2=5.560,P=0.018). The cumulative survival rates at 1-, 3- and 5-year were 93.41%, 93.41%, 89.95% in the LDLT group and 87.38%, 81.98%, 77.04% in the WLT group, respectively. There was no significant difference among the mature SLT group, the LDLT group and the WLT group (χ2=4.016, P=0.134). Abdominal hemorrhage, infection, primary liver graft nonfunction,and portal vein thrombosis were the main causes of early postoperative death. Conclusion: SLT can achieve results comparable to those of WLT and LDLT in mature technology liver transplant centers, but it needs to go through a certain time learning curve.
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Affiliation(s)
- Q Yang
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University, Institute of Organ Transplantation, Sun Yat-sen University, Guangdong Organ Transplantation Research Center, Guangdong Transplantation Medical Engineering Laboratory, Guangdong Provincial Key Laboratory of Liver Diseases, Guangzhou 510630
| | - S H Yi
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University, Institute of Organ Transplantation, Sun Yat-sen University, Guangdong Organ Transplantation Research Center, Guangdong Transplantation Medical Engineering Laboratory, Guangdong Provincial Key Laboratory of Liver Diseases, Guangzhou 510630
| | - B S Fu
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University, Institute of Organ Transplantation, Sun Yat-sen University, Guangdong Organ Transplantation Research Center, Guangdong Transplantation Medical Engineering Laboratory, Guangdong Provincial Key Laboratory of Liver Diseases, Guangzhou 510630
| | - T Zhang
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University, Institute of Organ Transplantation, Sun Yat-sen University, Guangdong Organ Transplantation Research Center, Guangdong Transplantation Medical Engineering Laboratory, Guangdong Provincial Key Laboratory of Liver Diseases, Guangzhou 510630
| | - K N Zeng
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University, Institute of Organ Transplantation, Sun Yat-sen University, Guangdong Organ Transplantation Research Center, Guangdong Transplantation Medical Engineering Laboratory, Guangdong Provincial Key Laboratory of Liver Diseases, Guangzhou 510630
| | - X Feng
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University, Institute of Organ Transplantation, Sun Yat-sen University, Guangdong Organ Transplantation Research Center, Guangdong Transplantation Medical Engineering Laboratory, Guangdong Provincial Key Laboratory of Liver Diseases, Guangzhou 510630
| | - J Yao
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University, Institute of Organ Transplantation, Sun Yat-sen University, Guangdong Organ Transplantation Research Center, Guangdong Transplantation Medical Engineering Laboratory, Guangdong Provincial Key Laboratory of Liver Diseases, Guangzhou 510630
| | - H Tang
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University, Institute of Organ Transplantation, Sun Yat-sen University, Guangdong Organ Transplantation Research Center, Guangdong Transplantation Medical Engineering Laboratory, Guangdong Provincial Key Laboratory of Liver Diseases, Guangzhou 510630
| | - H Li
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University, Institute of Organ Transplantation, Sun Yat-sen University, Guangdong Organ Transplantation Research Center, Guangdong Transplantation Medical Engineering Laboratory, Guangdong Provincial Key Laboratory of Liver Diseases, Guangzhou 510630
| | - J Zhang
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University, Institute of Organ Transplantation, Sun Yat-sen University, Guangdong Organ Transplantation Research Center, Guangdong Transplantation Medical Engineering Laboratory, Guangdong Provincial Key Laboratory of Liver Diseases, Guangzhou 510630
| | - Y C Zhang
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University, Institute of Organ Transplantation, Sun Yat-sen University, Guangdong Organ Transplantation Research Center, Guangdong Transplantation Medical Engineering Laboratory, Guangdong Provincial Key Laboratory of Liver Diseases, Guangzhou 510630
| | - H M Yi
- Organ transplant Intensive Care Unit, the Third Affiliated Hospital of Sun Yat-sen University,Guangzhou 510630
| | - H J Lyu
- Organ transplant Intensive Care Unit, the Third Affiliated Hospital of Sun Yat-sen University,Guangzhou 510630
| | - J R Liu
- Organ transplant Intensive Care Unit, the Third Affiliated Hospital of Sun Yat-sen University,Guangzhou 510630
| | - G J Luo
- Anesthesia & Surgery Center, the Third Affiliated Hospital of Sun Yat-sen University ,Guangzhou 510630
| | - M Ge
- Anesthesia & Surgery Center, the Third Affiliated Hospital of Sun Yat-sen University ,Guangzhou 510630
| | - W F Yao
- Anesthesia & Surgery Center, the Third Affiliated Hospital of Sun Yat-sen University ,Guangzhou 510630
| | - F F Ren
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University, Institute of Organ Transplantation, Sun Yat-sen University, Guangdong Organ Transplantation Research Center, Guangdong Transplantation Medical Engineering Laboratory, Guangdong Provincial Key Laboratory of Liver Diseases, Guangzhou 510630
| | - J F Zhuo
- Organ transplant Intensive Care Unit, the Third Affiliated Hospital of Sun Yat-sen University,Guangzhou 510630
| | - H Luo
- Anesthesia & Surgery Center, the Third Affiliated Hospital of Sun Yat-sen University ,Guangzhou 510630
| | - L P Zhu
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University, Institute of Organ Transplantation, Sun Yat-sen University, Guangdong Organ Transplantation Research Center, Guangdong Transplantation Medical Engineering Laboratory, Guangdong Provincial Key Laboratory of Liver Diseases, Guangzhou 510630
| | - J Ren
- Ultrasound Department of the Third Affiliated Hospital of Sun Yat-sen University,Guangzhou 510630
| | - Y Lyu
- Ultrasound Department of the Third Affiliated Hospital of Sun Yat-sen University,Guangzhou 510630
| | - K X Wang
- Organ Donation Department of the Third Affiliated Hospital of Sun Yat-sen University, Guangzhou 510630, China
| | - W Liu
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University, Institute of Organ Transplantation, Sun Yat-sen University, Guangdong Organ Transplantation Research Center, Guangdong Transplantation Medical Engineering Laboratory, Guangdong Provincial Key Laboratory of Liver Diseases, Guangzhou 510630
| | - G H Chen
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University, Institute of Organ Transplantation, Sun Yat-sen University, Guangdong Organ Transplantation Research Center, Guangdong Transplantation Medical Engineering Laboratory, Guangdong Provincial Key Laboratory of Liver Diseases, Guangzhou 510630
| | - Y Yang
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University, Institute of Organ Transplantation, Sun Yat-sen University, Guangdong Organ Transplantation Research Center, Guangdong Transplantation Medical Engineering Laboratory, Guangdong Provincial Key Laboratory of Liver Diseases, Guangzhou 510630
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Wang S, Yam C, Chen S, Hu L, Li L, Hung FF, Fan J, Che CM, Chen G. Predictions of photophysical properties of phosphorescent platinum(II) complexes based on ensemble machine learning approach. J Comput Chem 2024; 45:321-330. [PMID: 37861354 DOI: 10.1002/jcc.27238] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 09/18/2023] [Accepted: 09/23/2023] [Indexed: 10/21/2023]
Abstract
Cyclometalated Pt(II) complexes are popular phosphorescent emitters with color-tunable emissions. To render their practical applications as organic light-emitting diodes emitters, it is required to develop Pt(II) complexes with high radiative decay rate constant and photoluminescence (PL) quantum yield. Here, a general protocol is developed for accurate predictions of emission wavelength, radiative decay rate constant, and PL quantum yield based on the combination of first-principles quantum mechanical method, machine learning, and experimental calibration. A new dataset concerning phosphorescent Pt(II) emitters is constructed, with more than 200 samples collected from the literature. Features containing pertinent electronic properties of the complexes are chosen and ensemble learning models combined with stacking-based approaches exhibit the best performance, where the values of squared correlation coefficients are 0.96, 0.81, and 0.67 for the predictions of emission wavelength, PL quantum yield and radiative decay rate constant, respectively. The accuracy of the protocol is further confirmed using 24 recently reported Pt(II) complexes, which demonstrates its reliability for a broad palette of Pt(II) emitters.
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Affiliation(s)
- Shuai Wang
- Department of Chemistry, The University of Hong Kong, Hong Kong, China
| | - ChiYung Yam
- Hong Kong Quantum AI Lab Limited, Hong Kong, China
- Shenzhen Institute for Advanced Study, University of Electronic Science and Technology of China, Shenzhen, China
| | - Shuguang Chen
- Department of Chemistry, The University of Hong Kong, Hong Kong, China
- Hong Kong Quantum AI Lab Limited, Hong Kong, China
| | - LiHong Hu
- School of Information Science and Technology, Northeast Normal University, Changchun, China
| | - Liping Li
- Hong Kong Quantum AI Lab Limited, Hong Kong, China
| | - Faan-Fung Hung
- Department of Chemistry, The University of Hong Kong, Hong Kong, China
- Hong Kong Quantum AI Lab Limited, Hong Kong, China
- State Key Laboratory of Synthetic Chemistry, HKU-CAS Joint Laboratory on New Materials, The University of Hong Kong, Hong Kong, China
| | - Jiaqi Fan
- Hong Kong Quantum AI Lab Limited, Hong Kong, China
| | - Chi-Ming Che
- Department of Chemistry, The University of Hong Kong, Hong Kong, China
- Hong Kong Quantum AI Lab Limited, Hong Kong, China
- State Key Laboratory of Synthetic Chemistry, HKU-CAS Joint Laboratory on New Materials, The University of Hong Kong, Hong Kong, China
| | - GuanHua Chen
- Department of Chemistry, The University of Hong Kong, Hong Kong, China
- Hong Kong Quantum AI Lab Limited, Hong Kong, China
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Liang J, Han J, Zhuang Y, Chen G, Li Y. Mitochondria-Associated Transcriptome Profiling via Localizable Aggregation-Induced Emission Photosensitizers in Live Cells. ACS Chem Biol 2024; 19:419-427. [PMID: 38264802 DOI: 10.1021/acschembio.3c00617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2024]
Abstract
In recent decades, there has been increasing interest in studying mitochondria through transcriptomic research. Various exogenous fusion protein-based proximity labeling methods have been reported that focus on the site of one particular protein/peptide and might also influence the corresponding localization or interactome. To enable unbiased and high spatial-resolution profiling of mitochondria-associated transcriptomes in live cells, a flexible RNA proximity labeling approach was developed using aggregation-induced emission (AIE) type photosensitizers (PSs) that possess great mitochondria-targeting capabilities. Their accumulation in an enclosed mitochondrial environment tends to enhance the fluorescence emission and reactive oxygen species generation. By comparing the in vitro optical properties, photosensitization processes, as well as the in cellulo mitochondrial specificity and RNA labeling performance of four AIE PSs, high-throughput sequencing analysis was conducted using TFPy-mediated RNA proximity labeling in live HeLa cells. This approach successfully captured a comprehensive list of transcripts, including mitochondria-encoded RNAs, as well as some nuclear-derived RNAs located at the outer mitochondrial membrane and interacting organelles. This small molecule-based proximity labeling method bypasses complex genetic manipulation and transfection steps, making it readily applicable for diverse research purposes.
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Affiliation(s)
- Jiying Liang
- Department of Chemistry, The University of Hong Kong, Hong Kong 999077, China
| | - Jinghua Han
- Department of Chemistry, The University of Hong Kong, Hong Kong 999077, China
| | - Yuan Zhuang
- Department of Chemistry, The University of Hong Kong, Hong Kong 999077, China
- Hong Kong Quantum AI Lab Limited, Hong Kong 999077, China
| | - GuanHua Chen
- Department of Chemistry, The University of Hong Kong, Hong Kong 999077, China
- Hong Kong Quantum AI Lab Limited, Hong Kong 999077, China
| | - Ying Li
- Department of Chemistry, The University of Hong Kong, Hong Kong 999077, China
- Laboratory for Synthetic Chemistry and Chemical Biology Limited, New Territories, Hong Kong 999077, China
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Chen GH, Dai YC, Hsieh SC, Tsai JJ, Sy AK, Jiz M, Pedroso C, Brites C, Netto EM, Kanki PJ, Saunders DRD, Vanlandingham DL, Higgs S, Huang YJS, Wang WK. Detection of anti-premembrane antibody as a specific marker of four flavivirus serocomplexes and its application to serosurveillance in endemic regions. medRxiv 2023:2023.09.21.23295701. [PMID: 37808865 PMCID: PMC10557774 DOI: 10.1101/2023.09.21.23295701] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/10/2023]
Abstract
In the past few decades, several emerging/re-emerging mosquito-borne flaviviruses have resulted in disease outbreaks of public health concern in the tropics and subtropics. Due to cross-reactivities of antibodies recognizing the envelope protein of different flaviviruses, serosurveillance remains a challenge. Previously we reported that anti-premembrane (prM) antibody can discriminate between three flavivirus infections by Western blot analysis. In this study, we aimed to develop a serological assay that can discriminate infection or exposure with flaviviruses from four serocomplexes, including dengue (DENV), Zika (ZIKV), West Nile (WNV) and yellow fever (YFV) viruses, and explore its application for serosurveillance in flavivirus-endemic countries. We employed Western blot analysis including antigens of six flaviviruses (DENV1, 2 and 4, WNV, ZIKV and YFV) from four serocomplexes. We tested serum samples from YF-17D vaccinees, and from DENV, ZIKV and WNV panels that had been confirmed by RT-PCR or by neutralization assays. The overall sensitivity/specificity of anti-prM antibodies for DENV, ZIKV, WNV, and YFV infections/exposure were 91.7%/96.4%, 91.7%/99.2%, 88.9%/98.3%, and 91.3%/92.5%, respectively. When testing 48 samples from Brazil, we identified multiple flavivirus infections/exposure including DENV and ZIKV, DENV and YFV, and DENV, ZIKV and YFV. When testing 50 samples from the Philippines, we detected DENV, ZIKV, and DENV and ZIKV infections with a ZIKV seroprevalence rate of 10%, which was consistent with reports of low-level circulation of ZIKV in Asia. Together, these findings suggest that anti-prM antibody is a flavivirus serocomplex-specific marker and can be employed to delineate four flavivirus infections/exposure in regions where multiple flaviviruses co-circulate.
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7
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Wu J, Pun SM, Zheng X, Chen G. Construct exchange-correlation functional via machine learning. J Chem Phys 2023; 159:090901. [PMID: 37671956 DOI: 10.1063/5.0150587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Accepted: 07/27/2023] [Indexed: 09/07/2023] Open
Abstract
Density functional theory has been widely used in quantum mechanical simulations, but the search for a universal exchange-correlation (XC) functional has been elusive. Over the last two decades, machine-learning techniques have been introduced to approximate the XC functional or potential, and recent advances in deep learning have renewed interest in this approach. In this article, we review early efforts to use machine learning to approximate the XC functional, with a focus on the challenge of transferring knowledge from small molecules to larger systems. Recently, the transferability problem has been addressed through the use of quasi-local density-based descriptors, which are rooted in the holographic electron density theorem. We also discuss recent developments using deep-learning techniques that target high-level ab initio molecular energy and electron density for training. These efforts can be unified under a general framework, which will also be discussed from this perspective. Additionally, we explore the use of auxiliary machine-learning models for van der Waals interactions.
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Affiliation(s)
- Jiang Wu
- Department of Chemistry, The University of Hong Kong, Hong Kong, China
- Hong Kong Quantum AI Lab, Hong Kong, China
| | - Sai-Mang Pun
- Department of Chemistry, The University of Hong Kong, Hong Kong, China
- Hong Kong Quantum AI Lab, Hong Kong, China
| | - Xiao Zheng
- Department of Chemistry, Fudan University, Shanghai 200433, China
| | - GuanHua Chen
- Department of Chemistry, The University of Hong Kong, Hong Kong, China
- Hong Kong Quantum AI Lab, Hong Kong, China
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Li HH, Su MP, Wu SC, Tsou HH, Chang MC, Cheng YC, Tsai KN, Wang HW, Chen GH, Tang CK, Chung PJ, Tsai WT, Huang LR, Yueh YA, Chen HW, Pan CY, Akbari OS, Chang HH, Yu GY, Marshall JM, Chen CH. Mechanical transmission of dengue virus by Aedes aegypti may influence disease transmission dynamics during outbreaks. EBioMedicine 2023; 94:104723. [PMID: 37487418 PMCID: PMC10382859 DOI: 10.1016/j.ebiom.2023.104723] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Revised: 07/02/2023] [Accepted: 07/06/2023] [Indexed: 07/26/2023] Open
Abstract
BACKGROUND Dengue virus outbreaks are increasing in number and severity worldwide. Viral transmission is assumed to require a minimum time period of viral replication within the mosquito midgut. It is unknown if alternative transmission periods not requiring replication are possible. METHODS We used a mouse model of dengue virus transmission to investigate the potential of mechanical transmission of dengue virus. We investigated minimal viral titres necessary for development of symptoms in bitten mice and used resulting parameters to inform a new model of dengue virus transmission within a susceptible population. FINDINGS Naïve mice bitten by mosquitoes immediately after they took partial blood meals from dengue infected mice showed symptoms of dengue virus, followed by mortality. Incorporation of mechanical transmission into mathematical models of dengue virus transmission suggest that this supplemental transmission route could result in larger outbreaks which peak sooner. INTERPRETATION The potential of dengue transmission routes independent of midgut viral replication has implications for vector control strategies that target mosquito lifespan and suggest the possibility of similar mechanical transmission routes in other disease-carrying mosquitoes. FUNDING This study was funded by grants from the National Health Research Institutes, Taiwan (04D2-MMMOST02), the Human Frontier Science Program (RGP0033/2021), the National Institutes of Health (1R01AI143698-01A1, R01AI151004 and DP2AI152071) and the Ministry of Science and Technology, Taiwan (MOST104-2321-B-400-016).
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Affiliation(s)
- Hsing-Han Li
- National Mosquito-Borne Disease Control Research Center, NHRI, Miaoli, 350401, Taiwan; National Institute of Infectious Diseases and Vaccinology, NHRI, Miaoli, 350401, Taiwan; Division of Biological Sciences, Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA, 92093, USA
| | - Matthew P Su
- Graduate School of Science, Nagoya University, Nagoya, 464-8602, Japan; Institute for Advanced Research, Nagoya University, Nagoya, 464-8601, Japan
| | - Shih-Cheng Wu
- National Mosquito-Borne Disease Control Research Center, NHRI, Miaoli, 350401, Taiwan; National Institute of Infectious Diseases and Vaccinology, NHRI, Miaoli, 350401, Taiwan; Department of Clinical Laboratory Sciences and Medical Biotechnology, College of Medicine, National Taiwan University, Taipei, 10048, Taiwan; Department of Laboratory Medicine, National Taiwan University Hospital, College of Medicine, National Taiwan University, Taipei, 10021, Taiwan
| | - Hsiao-Hui Tsou
- Institute of Population Health Sciences, National Health Research Institutes, Zhunan, Miaoli, 350401, Taiwan; Graduate Institute of Biostatistics, College of Public Health, China Medical University, Taichung, 40402, Taiwan
| | - Meng-Chun Chang
- Department of Life Science & Institute of Bioinformatics and Structural Biology, National Tsing Hua University, Hsinchu, Taiwan
| | - Yu-Chieh Cheng
- Institute of Population Health Sciences, National Health Research Institutes, Zhunan, Miaoli, 350401, Taiwan
| | - Kuen-Nan Tsai
- Institute of Molecular and Genomic Medicine, NHRI, Miaoli, 350401, Taiwan
| | - Hsin-Wei Wang
- National Mosquito-Borne Disease Control Research Center, NHRI, Miaoli, 350401, Taiwan; National Institute of Infectious Diseases and Vaccinology, NHRI, Miaoli, 350401, Taiwan
| | - Guan-Hua Chen
- National Institute of Infectious Diseases and Vaccinology, NHRI, Miaoli, 350401, Taiwan; Department of Biological Science and Technology, National Yang Ming Chiao Tung University, Hsinchu, 300, Taiwan
| | - Cheng-Kang Tang
- National Institute of Infectious Diseases and Vaccinology, NHRI, Miaoli, 350401, Taiwan; Program of Plant Protection and Health, Academy of Circular Economy, National Chung Hsing University, Taichung, 402202, Taiwan
| | - Pei-Jung Chung
- National Institute of Infectious Diseases and Vaccinology, NHRI, Miaoli, 350401, Taiwan
| | - Wan-Ting Tsai
- National Institute of Infectious Diseases and Vaccinology, NHRI, Miaoli, 350401, Taiwan
| | - Li-Rung Huang
- Institute of Molecular and Genomic Medicine, NHRI, Miaoli, 350401, Taiwan
| | - Yueh Andrew Yueh
- Institute of Biotechnology and Pharmaceutical Research, NHRI, Miaoli, 350401, Taiwan
| | - Hsin-Wei Chen
- National Institute of Infectious Diseases and Vaccinology, NHRI, Miaoli, 350401, Taiwan
| | - Chao-Ying Pan
- Department of Health, Kaohsiung City Government, Kaohsiung, 800852, Taiwan
| | - Omar S Akbari
- Division of Biological Sciences, Section of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA, 92093, USA
| | - Hsiao-Han Chang
- Department of Life Science & Institute of Bioinformatics and Structural Biology, National Tsing Hua University, Hsinchu, Taiwan
| | - Guann-Yi Yu
- National Institute of Infectious Diseases and Vaccinology, NHRI, Miaoli, 350401, Taiwan
| | - John M Marshall
- Divisions of Biostatistics and Epidemiology, School of Public Health, University of California, Berkeley, CA, 94720, USA
| | - Chun-Hong Chen
- National Mosquito-Borne Disease Control Research Center, NHRI, Miaoli, 350401, Taiwan; National Institute of Infectious Diseases and Vaccinology, NHRI, Miaoli, 350401, Taiwan.
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9
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Tang J, Wu P, Yu ZY, Wang X, Tao SY, Jiang NN, Chen GH, Shuai RX. [Regulatory effect of moxibustion on LTB4/MMP-9 in serum of patients with rheumatoid arthritis]. Zhen Ci Yan Jiu 2023; 48:488-93. [PMID: 37247863 DOI: 10.13702/j.1000-0607.20220088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
OBJECTIVE To observe the effects of moxibustion on the contents of leukotriene B4 (LTB4), interleukin-17 (IL-17), tumor necrosis factor-α (TNF-α) and matrix metalloproteinase -9 (MMP-9) in serum, and explore the protection mechanisms of moxibustion in the patients with rheumatoid arthritis (RA). METHODS A total of 64 patients with RA were randomly divided into treatment group (n=31) and control group (n=33). The patients in the control group were treated with conventional medication for consecutive 5 weeks. Based on the treatment in the control group, the patients in the treatment group were treated with moxibustion at bilateral Shenshu (BL23), Zusanli (ST36) and Ashi points, 3 times a week, for consecutive 5 weeks. Separately, the visual analogue scale (VAS) score, morning stiffness score, the number of tender joints, the number of swollen joints, the score of the disease activity score of 28 joints (DAS28) were observed; the contents of rheumatoid factor (RF), erythrocyte sedimentation rate (ESR) and C-reative protein (CRP) in serum were determined by biochemical method; and the contents of LTB4, IL-17, TNF-α and MMP-9 in serum were detected by using ELISA before and after treatment in the patients of both groups. RESULTS After treatment, VAS score, morning stiffness score, the number of tender joints, the number of swollen joints, DAS28 score, the contents of serum RF in both groups, and contents of serum CRP, ESR, LTB4, IL-17, TNF-α and MMP-9 in the treatment group were significantly reduced when compared with those before treatment (P<0.01, P<0.05). After treatment, VAS score, morning stiffness score, the number of tender joints, the number of swollen joints, DAS28 score, and the levels of LTB4, IL-17 and MMP-9 in serum were obviously lower in the treatment group when compared with the control group (P<0.01, P<0.05). In the treatment group, the changes before and after treatment in the levels of LTB4, IL-17 and TNF-α were positively correlated with that of MMP-9 (P<0.05, r>0). CONCLUSION Moxibustion at BL23 and ST36 combined with conventional medication significantly relieves joint pain and reduce disease activity in RA patients, which may be related to the modulation of LTB4, IL-17 and MMP-9 by moxibustion.
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Affiliation(s)
- Jie Tang
- College of Acupuncture-Moxibustion and Tuina, Chengdu University of Traditional Chinese Medicine, Chengdu 610075, China
| | - Ping Wu
- College of Acupuncture-Moxibustion and Tuina, Chengdu University of Traditional Chinese Medicine, Chengdu 610075, China
| | - Ze-Yun Yu
- The First People's Hospital of Yibin City, Yibin 644099, Sichuan Province
| | - Xue Wang
- College of Acupuncture-Moxibustion and Tuina, Chengdu University of Traditional Chinese Medicine, Chengdu 610075, China
| | - Si-Yu Tao
- College of Acupuncture-Moxibustion and Tuina, Chengdu University of Traditional Chinese Medicine, Chengdu 610075, China
| | - Nan-Nan Jiang
- College of Acupuncture-Moxibustion and Tuina, Chengdu University of Traditional Chinese Medicine, Chengdu 610075, China
| | - Guan-Hua Chen
- College of Acupuncture-Moxibustion and Tuina, Chengdu University of Traditional Chinese Medicine, Chengdu 610075, China
| | - Rou-Xian Shuai
- 1College of Acupuncture-Moxibustion and Tuina, Chengdu University of Traditional Chinese Medicine, Chengdu 610075, China; 2The First People's Hospital of Yibin City, Yibin 644099, Sichuan Province
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10
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Qi MY, Zhang SD, Guo S, Ji PX, Mao JJ, Wu TT, Lu SQ, Zhang X, Chen SG, Su D, Chen GH, Cao AM. Integrated Surface Modulation of Ultrahigh Ni Cathode Materials for Improved Battery Performance. Small Methods 2023:e2300280. [PMID: 37086111 DOI: 10.1002/smtd.202300280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Indexed: 05/03/2023]
Abstract
Ni-rich layered cathodes with ultrahigh nickel content (≥90%), for example LiNi0.9 Co0.1 O2 (NC0.9), are promising for next-generation high-energy Li-ion batteries (LIBs), but face stability issues related to structural degradation and side reactions during the electrochemical process. Here, surface modulation is demonstrated by integrating a Li+ -conductive nanocoating and gradient lattice doping to stabilize the active cathode efficiently for extended cycles. Briefly, a wet-chemistry process is developed to deposit uniform ZrO(OH)2 nanoshells around Ni0.905 Co0.095 (OH)2 (NC0.9-OH) hydroxide precursors, followed by high temperature lithiation to create reinforced products featuring Zr doping in the crust lattice decorated with Li2 ZrO3 nanoparticles on the surface. It is identified that the Zr4+ infiltration reconstructed the surface lattice into favorable characters such as Li+ deficiency and Ni3+ reduction, which are effective to combat side reactions and suppress phase degradation and crack formation. This surface control is able to achieve an optimized balance between surface stabilization and charge transfer, resulting in an extraordinary capacity retention of 96.6% after 100 cycles at 1 C and an excellent rate capability of 148.8 mA h g-1 at 10 C. This study highlights the critical importance of integrated surface modulation for high stability of cathode materials in next-generation LIBs.
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Affiliation(s)
- Mu-Yao Qi
- CAS Key Laboratory of Molecular Nanostructure and Nanotechnology, and Beijing National Laboratory for Molecular Sciences (BNLMS), Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing, 100190, P. R. China
- University of Chinese Academy of Sciences (UCAS), Beijing, 100049, P. R. China
| | - Si-Dong Zhang
- CAS Key Laboratory of Molecular Nanostructure and Nanotechnology, and Beijing National Laboratory for Molecular Sciences (BNLMS), Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing, 100190, P. R. China
- University of Chinese Academy of Sciences (UCAS), Beijing, 100049, P. R. China
| | - Sijie Guo
- CAS Key Laboratory of Molecular Nanostructure and Nanotechnology, and Beijing National Laboratory for Molecular Sciences (BNLMS), Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing, 100190, P. R. China
- University of Chinese Academy of Sciences (UCAS), Beijing, 100049, P. R. China
| | - Peng-Xiang Ji
- University of Chinese Academy of Sciences (UCAS), Beijing, 100049, P. R. China
- Beijing National Laboratory for Condensed Matter Physics, Institute of Physics, Chinese Academy of Sciences (CAS), Beijing, 100190, P. R. China
| | - Jian-Jun Mao
- Department of Chemistry, The University of Hong Kong, Hong Kong, SAR, 999077, P. R. China
- Hong Kong Quantum AI Lab Limited, Hong Kong, SAR, 999077, P. R. China
| | - Ting-Ting Wu
- National Engineering Research Center for Advanced Polymer Processing Technology, Key Laboratory of Advanced Material Processing & Mold (Ministry of Education), Zhengzhou University, Zhengzhou, 450002, P. R. China
| | - Si-Qi Lu
- CAS Key Laboratory of Molecular Nanostructure and Nanotechnology, and Beijing National Laboratory for Molecular Sciences (BNLMS), Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing, 100190, P. R. China
- University of Chinese Academy of Sciences (UCAS), Beijing, 100049, P. R. China
| | - Xing Zhang
- CAS Key Laboratory of Molecular Nanostructure and Nanotechnology, and Beijing National Laboratory for Molecular Sciences (BNLMS), Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing, 100190, P. R. China
- University of Chinese Academy of Sciences (UCAS), Beijing, 100049, P. R. China
| | - Shu-Guang Chen
- Department of Chemistry, The University of Hong Kong, Hong Kong, SAR, 999077, P. R. China
- Hong Kong Quantum AI Lab Limited, Hong Kong, SAR, 999077, P. R. China
| | - Dong Su
- University of Chinese Academy of Sciences (UCAS), Beijing, 100049, P. R. China
- Beijing National Laboratory for Condensed Matter Physics, Institute of Physics, Chinese Academy of Sciences (CAS), Beijing, 100190, P. R. China
| | - Guan-Hua Chen
- Department of Chemistry, The University of Hong Kong, Hong Kong, SAR, 999077, P. R. China
- Hong Kong Quantum AI Lab Limited, Hong Kong, SAR, 999077, P. R. China
| | - An-Min Cao
- CAS Key Laboratory of Molecular Nanostructure and Nanotechnology, and Beijing National Laboratory for Molecular Sciences (BNLMS), Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing, 100190, P. R. China
- University of Chinese Academy of Sciences (UCAS), Beijing, 100049, P. R. China
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11
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Wang J, Wang Y, Xu RX, Chen G, Zheng X. A semilocal machine-learning correction to density functional approximations. J Chem Phys 2023; 158:2883454. [PMID: 37094007 DOI: 10.1063/5.0148438] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Accepted: 04/05/2023] [Indexed: 04/26/2023] Open
Abstract
Machine learning (ML) has demonstrated its potential usefulness for the development of density functional theory methods. In this work, we construct an ML model to correct the density functional approximations, which adopts semilocal descriptors of electron density and density derivative and is trained by accurate reference data of relative and absolute energies. The resulting ML-corrected functional is tested on a comprehensive dataset including various types of energetic properties. Particularly, the ML-corrected Becke's three parameters and the Lee-Yang-Parr correlation (B3LYP) functional achieves a substantial improvement over the original B3LYP on the prediction of total energies of atoms and molecules and atomization energies, and a marginal improvement on the prediction of ionization potentials, electron affinities, and bond dissociation energies; whereas, it preserves the same level of accuracy for isomerization energies and reaction barrier heights. The ML-corrected functional allows for fully self-consistent-field calculation with similar efficiency to the parent functional. This study highlights the progress of building an ML correction toward achieving a functional that performs uniformly better than B3LYP.
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Affiliation(s)
- JingChun Wang
- Department of Chemistry, Fudan University, Shanghai 200433, China
- CAS Key Laboratory of Precision and Intelligent Chemistry, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Yao Wang
- Hefei National Research Center for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Rui-Xue Xu
- CAS Key Laboratory of Precision and Intelligent Chemistry, University of Science and Technology of China, Hefei, Anhui 230026, China
- Hefei National Research Center for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - GuanHua Chen
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Xiao Zheng
- Department of Chemistry, Fudan University, Shanghai 200433, China
- Hefei National Research Center for Physical Sciences at the Microscale and Synergetic Innovation Center of Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, Anhui 230026, China
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Lu SQ, Zhang Q, Meng F, Liu YN, Mao J, Guo S, Qi MY, Xu YS, Qiao Y, Zhang SD, Jiang K, Gu L, Xia Y, Chen S, Chen G, Cao AM, Wan LJ. Surface Lattice Modulation through Chemical Delithiation toward a Stable Nickel-Rich Layered Oxide Cathode. J Am Chem Soc 2023; 145:7397-7407. [PMID: 36961942 DOI: 10.1021/jacs.2c13787] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/26/2023]
Abstract
Nickel-rich layered oxides (NLOs) are considered as one of the most promising cathode materials for next-generation high-energy lithium-ion batteries (LIBs), yet their practical applications are currently challenged by the unsatisfactory cyclability and reliability owing to their inherent interfacial and structural instability. Herein, we demonstrate an approach to reverse the unstable nature of NLOs through surface solid reaction, by which the reconstructed surface lattice turns stable and robust against both side reactions and chemophysical breakdown, resulting in improved cycling performance. Specifically, conformal La(OH)3 nanoshells are built with their thicknesses controlled at nanometer accuracy, which act as a Li+ capturer and induce controlled reaction with the NLO surface lattices, thereby transforming the particle crust into an epitaxial layer with localized Ni/Li disordering, where lithium deficiency and nickel stabilization are both achieved by transforming oxidative Ni3+ into stable Ni2+. An optimized balance between surface stabilization and charge transfer is demonstrated by a representative NLO material, namely, LiNi0.83Co0.07Mn0.1O2, whose surface engineering leads to a highly improved capacity retention and excellent rate capability with a strong capability to inhibit the crack of NLO particles. Our study highlights the importance of surface chemistry in determining chemical and structural behaviors and paves a research avenue in controlling the surface lattice for the stabilization of NLOs toward reliable high-energy LIBs.
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Affiliation(s)
- Si-Qi Lu
- CAS Key Laboratory of Molecular Nanostructure and Nanotechnology, and Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Qinghua Zhang
- Beijing National Laboratory for Condensed Matter Physics, Institute of Physics, Chinese Academy of Sciences (CAS), Beijing 100190, P. R. China
| | - Fanqi Meng
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
- Beijing National Laboratory for Condensed Matter Physics, Institute of Physics, Chinese Academy of Sciences (CAS), Beijing 100190, P. R. China
| | - Ya-Ning Liu
- College of Materials Science and Engineering, Zhejiang University of Technology, Hangzhou 310014, China
| | - Jianjun Mao
- Department of Chemistry, The University of Hong Kong, Pok Fu Lam Road, Hong Kong 999077, P. R. China
- Hong Kong Quantum AI Lab Limited, Hong Kong 999077, P. R. China
| | - Sijie Guo
- CAS Key Laboratory of Molecular Nanostructure and Nanotechnology, and Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing 100190, P. R. China
| | - Mu-Yao Qi
- CAS Key Laboratory of Molecular Nanostructure and Nanotechnology, and Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Yan-Song Xu
- CAS Key Laboratory of Molecular Nanostructure and Nanotechnology, and Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing 100190, P. R. China
- Department of Chemistry, College of Science, Huazhong Agricultural University, No. 1, Shizishan Street, Wuhan 430070, P. R. China
| | - Yan Qiao
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
- Beijing National Laboratory for Molecular Sciences (BNLMS), Laboratory of Polymer Physics and Chemistry, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Si-Dong Zhang
- CAS Key Laboratory of Molecular Nanostructure and Nanotechnology, and Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Kecheng Jiang
- Dongguan TAFEL New Energy Technology Company, Limited, Dongguan 523000, P. R. China
| | - Lin Gu
- School of Materials Science and Engineering, Tsinghua University, Beijing 100084, China
| | - Yang Xia
- College of Materials Science and Engineering, Zhejiang University of Technology, Hangzhou 310014, China
| | - Shuguang Chen
- Department of Chemistry, The University of Hong Kong, Pok Fu Lam Road, Hong Kong 999077, P. R. China
- Hong Kong Quantum AI Lab Limited, Hong Kong 999077, P. R. China
| | - GuanHua Chen
- Department of Chemistry, The University of Hong Kong, Pok Fu Lam Road, Hong Kong 999077, P. R. China
- Hong Kong Quantum AI Lab Limited, Hong Kong 999077, P. R. China
| | - An-Min Cao
- CAS Key Laboratory of Molecular Nanostructure and Nanotechnology, and Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Li-Jun Wan
- CAS Key Laboratory of Molecular Nanostructure and Nanotechnology, and Beijing National Laboratory for Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences (CAS), Beijing 100190, P. R. China
- University of Chinese Academy of Sciences, Beijing 100049, P. R. China
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13
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Gao R, Hu Z, Mao J, Chen S, Yam C, Chen G. Self-Consistent-Charge Density-Functional Tight-Binding Parameters for Modeling an All-Solid-State Lithium Battery. J Chem Theory Comput 2023; 19:1381-1387. [PMID: 36812059 DOI: 10.1021/acs.jctc.2c01115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/24/2023]
Abstract
All-solid-state lithium-ion batteries have been a promising solution for next-generation energy storage due to their safety and potentially high energy density. In this work, we developed a density-functional tight-binding (DFTB) parameter set for modeling solid-state lithium batteries, focusing on the band alignment at electrolyte/electrode interfaces. Despite DFTB being widely applied in the simulation of large-scale systems, parametrization is usually done for single materials, and less attention is paid to band alignment among multiple materials. Band offsets at the electrolyte/electrode interfaces are key quantities determining the performance. Here, an automated global optimization method based on DFTB confinement potentials of all elements is developed, while the band offsets between electrodes and electrolytes are introduced as constraints during the optimization. The parameter set is applied to model an all-solid-state Li/Li2PO2N/LiCoO2 battery, and its electronic structure shows a good agreement with that from density-functional theory (DFT) calculations.
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Affiliation(s)
- Rongzhi Gao
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR 999077, China
| | - Ziyang Hu
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR 999077, China.,Hong Kong Quantum AI Lab Limited, Hong Kong SAR 999077, China
| | - Jianjun Mao
- Hong Kong Quantum AI Lab Limited, Hong Kong SAR 999077, China
| | - Shuguang Chen
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR 999077, China.,Hong Kong Quantum AI Lab Limited, Hong Kong SAR 999077, China
| | - ChiYung Yam
- Hong Kong Quantum AI Lab Limited, Hong Kong SAR 999077, China.,Shenzhen Institute for Advanced Study, University of Electronic Science and Technology of China, Shenzhen 518000, China
| | - GuanHua Chen
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR 999077, China.,Hong Kong Quantum AI Lab Limited, Hong Kong SAR 999077, China
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Hu XL, Li F, Chen GH, Tang LY, Liu WJ. High-performance plasmonic polymer modulators through mode hybridization and electro-thermomechanical effects. Opt Lett 2023; 48:964-967. [PMID: 36790986 DOI: 10.1364/ol.482028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Accepted: 01/04/2023] [Indexed: 06/18/2023]
Abstract
In this work, an electro-optical polymer modulator with double-layered gold nanostrips, a polymer nanograting, and a metal substrate is proposed and designed. Interestingly, mode hybridization between the Fabry-Pérot (F-P) and anti-bonding modes is formed, and strongly depends on the nanograting size, which can be controllably modulated by an injection current. The simulation and calculation results show that the temperature sensitivity and large structural sensitivity for the polymer modulator could remain constant during the current-tuning process, and a near-zero reflectance and a low linewidth of 13.8 nm in the red region corresponding to a high quality (Q) factor of 51 is achieved. In addition, a large redshift of 60.7 nm and a super-high modulation depth of 424 are obtained at only 8 µA.
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Lin ZT, Chen GH, Peng X, Zhang ZH, Li T, Lin HX, Liang SS, Zheng YB, Yao ZP, Luo W. A 2-bp deletion in intron 1 of TMEM182 is associated with TMEM182 mRNA expression and chicken body weight. Br Poult Sci 2023; 64:11-18. [PMID: 35759289 DOI: 10.1080/00071668.2022.2094217] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
1. Searching for molecular markers related to growth and carcase traits plays a critical role in improvement of the production performance of broilers. Previous studies found that transmembrane protein 182 (TMEM182) inhibits skeletal muscle development, growth, and regeneration, implying that the TMEM182 gene plays an important role during the development process of skeletal muscle.2. A novel 2-bp indel in intron 1 of TMEM182 was detected in a yellow chicken population derived from the cross of White Recessive Rock chickens with Xinghua chickens, and three genotypes II (inserted homozygote), ID (inserted and deleted heterozygote) and DD (deleted homozygote) were observed. Association analyses indicated that the indel was significantly associated with the body weight, muscle fibre area, breast muscle weight and wing weight in the F2 population.3. The expression of TMEM182 in leg muscle of chickens with II genotype was higher than that with DD genotype, with the 2-bp indel located in one of the putative PAX4 binding sites. Further research through luciferase assays revealed that the PAX4 could bind to the putative binding site and increase the TMEM182 transcription, with the 2-bp deletion disrupting the binding of PAX4.4. The present study provides evidence for the association of the novel 2-bp indel in intron 1 of TMEM182 with the growth and carcase traits of chickens. This 2-bp indel could be used as a genetic marker in broiler breeding.
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Affiliation(s)
- Z T Lin
- Department of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Guangzhou, Guangdong, China
- Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding, and Key Laboratory of Chicken Genetics, Breeding and Reproduction, Ministry of Agriculture, Guangzhou, Guangdong, China
| | - G H Chen
- Department of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Guangzhou, Guangdong, China
- Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding, and Key Laboratory of Chicken Genetics, Breeding and Reproduction, Ministry of Agriculture, Guangzhou, Guangdong, China
| | - X Peng
- Department of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Guangzhou, Guangdong, China
- Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding, and Key Laboratory of Chicken Genetics, Breeding and Reproduction, Ministry of Agriculture, Guangzhou, Guangdong, China
| | - Z H Zhang
- Department of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Guangzhou, Guangdong, China
- Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding, and Key Laboratory of Chicken Genetics, Breeding and Reproduction, Ministry of Agriculture, Guangzhou, Guangdong, China
| | - T Li
- Department of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Guangzhou, Guangdong, China
- Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding, and Key Laboratory of Chicken Genetics, Breeding and Reproduction, Ministry of Agriculture, Guangzhou, Guangdong, China
| | - H X Lin
- Department of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Guangzhou, Guangdong, China
- Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding, and Key Laboratory of Chicken Genetics, Breeding and Reproduction, Ministry of Agriculture, Guangzhou, Guangdong, China
| | - S S Liang
- Department of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Guangzhou, Guangdong, China
- Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding, and Key Laboratory of Chicken Genetics, Breeding and Reproduction, Ministry of Agriculture, Guangzhou, Guangdong, China
| | - Y B Zheng
- Department of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Guangzhou, Guangdong, China
- Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding, and Key Laboratory of Chicken Genetics, Breeding and Reproduction, Ministry of Agriculture, Guangzhou, Guangdong, China
| | - Z P Yao
- Department of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Guangzhou, Guangdong, China
- Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding, and Key Laboratory of Chicken Genetics, Breeding and Reproduction, Ministry of Agriculture, Guangzhou, Guangdong, China
| | - W Luo
- Department of Animal Genetics, Breeding and Reproduction, College of Animal Science, South China Agricultural University, Guangzhou, Guangdong, China
- Guangdong Provincial Key Lab of Agro-Animal Genomics and Molecular Breeding, and Key Laboratory of Chicken Genetics, Breeding and Reproduction, Ministry of Agriculture, Guangzhou, Guangdong, China
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Fu BS, Yi SH, Yi HM, Feng X, Zhang T, Yang Q, Zhang YC, Yao J, Tang H, Zeng KN, Li XB, Yang Z, Lyu L, Chen GH, Yang Y. [Clinical efficacy of split liver transplantation in the treatment of children with biliary atresia]. Zhonghua Wai Ke Za Zhi 2022; 60:900-905. [PMID: 36207978 DOI: 10.3760/cma.j.cn112139-20220712-00309] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Objective: To compare the clinical efficacy of split liver transplantation (SLT) and living donor liver transplantation(LDLT) in the treatment of children with biliary atresia. Methods: The clinical data of 64 children with biliary atresia who underwent SLT and 44 children who underwent LDLT from June 2017 to May 2022 at Liver Surgery & Liver Transplantation Center,the Third Affiliated Hospital of Sun Yat-sen University were retrospectively analyzed. Among the children who received SLT, there were 40 males and 24 females. The median age at transplantation was 8 months (range:4 to 168 months). Among the patients who received LDLT, there were 24 males and 20 females. The age at transplantation ranged from 4 to 24 months,with a median age of 7 months. Sixty-four children with biliary atresia were divided into two groups according to the SLT operation time: 32 cases in the early SLT group(June 2017 to January 2019) and 32 cases in the technically mature SLT group (February 2019 to May 2022). Rank sum test or t test was used to compare the recovery of liver function between the LDLT group and the SLT group,and between the early SLT group and the technically mature SLT group. The incidence of postoperative complications was compared by χ2 test or Fisher exact probability method. Kaplan-Meier method and Log-rank test were used for survival analysis. Results: The cold ischemia time(M (IQR)) (218 (65) minutes), intraoperative blood loss(175 (100) ml) and graft-to-recipient body weight ratio (3.0±0.7) in the LDLT group were lower than those in the SLT group(500 (130) minutes, 200 (250) ml, 3.4±0.8) (Z=-8.064,Z=-2.969, t=-2.048, all P<0.05). The cold ischemia time(457(158)minutes) and total hospital stay ((37.4±22.4)days) in the technically mature SLT group were lower than those in the early SLT group(510(60)minutes, (53.0±39.0)days).The differences were statistically significant (Z=-2.132, t=1.934, both P<0.05).The liver function indexes of LDLT group and SLT group showed unimodal changes within 1 week after operation. The peak values of ALT, AST, prothrombin time, activeated partial thromboplasting time, international normalized ratio, fibrinogen and creatinine all appeared at 1 day after operation, and the peak value of prothrombin activity appeared at 3 days after operation. All indicators returned to normal at 7 days after operation. The 1-,2-,and 3-year overall survival rates were 95.5% in LDLT group and 93.5% in the technically mature SLT group, and the difference was not statistically significant. The 1-,2-,and 3-year overall survival rates were 90.2% in the early SLT group and 93.5% in the technically mature SLT group, and there was no significant difference between the two groups(P>0.05). The main complications of the early SLT group were surgery-related complications(28.1%,9/32), and the main complications of the technically mature SLT group were non-surgery-related complications(21.9%,7/32). There were 5 deaths in the SLT group,including 4 in the early SLT group and 1 in the technically mature SLT group. Conclusion: The survival rate of SLT in the treatment of biliary atresia is comparable to that of LDLT.
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Affiliation(s)
- B S Fu
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University;Institute of Organ Transplantation,Sun Yat-sen University;Guangdong Organ Transplantation Research Center;Guangdong Transplantation Medical Engineering Laboratory;Guangdong Provincial Key Laboratory of Liver Diseases,Guangzhou 510630,China
| | - S H Yi
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University;Institute of Organ Transplantation,Sun Yat-sen University;Guangdong Organ Transplantation Research Center;Guangdong Transplantation Medical Engineering Laboratory;Guangdong Provincial Key Laboratory of Liver Diseases,Guangzhou 510630,China
| | - H M Yi
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University;Institute of Organ Transplantation,Sun Yat-sen University;Guangdong Organ Transplantation Research Center;Guangdong Transplantation Medical Engineering Laboratory;Guangdong Provincial Key Laboratory of Liver Diseases,Guangzhou 510630,China
| | - X Feng
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University;Institute of Organ Transplantation,Sun Yat-sen University;Guangdong Organ Transplantation Research Center;Guangdong Transplantation Medical Engineering Laboratory;Guangdong Provincial Key Laboratory of Liver Diseases,Guangzhou 510630,China
| | - T Zhang
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University;Institute of Organ Transplantation,Sun Yat-sen University;Guangdong Organ Transplantation Research Center;Guangdong Transplantation Medical Engineering Laboratory;Guangdong Provincial Key Laboratory of Liver Diseases,Guangzhou 510630,China
| | - Q Yang
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University;Institute of Organ Transplantation,Sun Yat-sen University;Guangdong Organ Transplantation Research Center;Guangdong Transplantation Medical Engineering Laboratory;Guangdong Provincial Key Laboratory of Liver Diseases,Guangzhou 510630,China
| | - Y C Zhang
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University;Institute of Organ Transplantation,Sun Yat-sen University;Guangdong Organ Transplantation Research Center;Guangdong Transplantation Medical Engineering Laboratory;Guangdong Provincial Key Laboratory of Liver Diseases,Guangzhou 510630,China
| | - J Yao
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University;Institute of Organ Transplantation,Sun Yat-sen University;Guangdong Organ Transplantation Research Center;Guangdong Transplantation Medical Engineering Laboratory;Guangdong Provincial Key Laboratory of Liver Diseases,Guangzhou 510630,China
| | - H Tang
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University;Institute of Organ Transplantation,Sun Yat-sen University;Guangdong Organ Transplantation Research Center;Guangdong Transplantation Medical Engineering Laboratory;Guangdong Provincial Key Laboratory of Liver Diseases,Guangzhou 510630,China
| | - K N Zeng
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University;Institute of Organ Transplantation,Sun Yat-sen University;Guangdong Organ Transplantation Research Center;Guangdong Transplantation Medical Engineering Laboratory;Guangdong Provincial Key Laboratory of Liver Diseases,Guangzhou 510630,China
| | - X B Li
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University;Institute of Organ Transplantation,Sun Yat-sen University;Guangdong Organ Transplantation Research Center;Guangdong Transplantation Medical Engineering Laboratory;Guangdong Provincial Key Laboratory of Liver Diseases,Guangzhou 510630,China
| | - Z Yang
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University;Institute of Organ Transplantation,Sun Yat-sen University;Guangdong Organ Transplantation Research Center;Guangdong Transplantation Medical Engineering Laboratory;Guangdong Provincial Key Laboratory of Liver Diseases,Guangzhou 510630,China
| | - L Lyu
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University;Institute of Organ Transplantation,Sun Yat-sen University;Guangdong Organ Transplantation Research Center;Guangdong Transplantation Medical Engineering Laboratory;Guangdong Provincial Key Laboratory of Liver Diseases,Guangzhou 510630,China
| | - G H Chen
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University;Institute of Organ Transplantation,Sun Yat-sen University;Guangdong Organ Transplantation Research Center;Guangdong Transplantation Medical Engineering Laboratory;Guangdong Provincial Key Laboratory of Liver Diseases,Guangzhou 510630,China
| | - Y Yang
- Liver Surgery & Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University;Institute of Organ Transplantation,Sun Yat-sen University;Guangdong Organ Transplantation Research Center;Guangdong Transplantation Medical Engineering Laboratory;Guangdong Provincial Key Laboratory of Liver Diseases,Guangzhou 510630,China
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17
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Yang G, Chiu WY, Wu J, Zhou Y, Chen S, Zhou W, Fan J, Chen G. Predicting Experimental Heats of Formation via Deep Learning with Limited Experimental Data. J Phys Chem A 2022; 126:6295-6300. [PMID: 36054912 DOI: 10.1021/acs.jpca.2c02957] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
When it comes to predicting experimental values of molecular properties with deep learning, the key problem is the lack of sufficient experimental data for training. We propose a method that consists of pretraining a graph neural network that aims to reproduce first-principles quantum mechanical results, followed by fine-tuning of a fully connected neural network against experimental results. The combined pretraining and fine-tuning model is expected to yield molecular properties close to experimental accuracy. This is made possible because first-principles quantum mechanical methods are often qualitatively correct or semiquantitatively accurate; thus, a calibration of the calculation results against high-precision but limited experiment data can improve accuracy greatly. Moreover, the method is highly efficient, as first-principles quantum mechanical calculation is bypassed. To demonstrate this, we apply the combined model to determine the experimental heats of formation of organic molecules made of H, C, O, N, or F atoms (up to 30 atoms), where mere 405 experimental data are used. The overall mean absolute error is 1.8 kcal/mol for these molecules.
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Affiliation(s)
- GuanYa Yang
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China
| | - Wai Yuet Chiu
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China
| | - Jiang Wu
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China.,Hong Kong Quantum AI Lab Limited, Pak Shek Kok, Hong Kong SAR, China
| | - Yi Zhou
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China
| | - ShuGuang Chen
- Hong Kong Quantum AI Lab Limited, Pak Shek Kok, Hong Kong SAR, China
| | - WeiJun Zhou
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China
| | - Jiaqi Fan
- Hong Kong Quantum AI Lab Limited, Pak Shek Kok, Hong Kong SAR, China
| | - GuanHua Chen
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China.,Hong Kong Quantum AI Lab Limited, Pak Shek Kok, Hong Kong SAR, China
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18
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Yan Z, Chen GH, Yao WQ, Yan LZ, Jin S, Shang JJ, Shi XL, Wu DP, Fu CC. [The expression level of secretory mature B cell surface antigen in primary diagnosed multiple myeloma and its clinical significance]. Zhonghua Yi Xue Za Zhi 2022; 102:2351-2356. [PMID: 35970793 DOI: 10.3760/cma.j.cn112137-20211231-02933] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Objective: To explorer Secretory mature B cell surface antigen (sBCMA) expression level, changes during treatment and clinical significance in newly diagnosed MM patients. Methods: Clinical data of 158 MM patients admitted to the Department of Hematology, the First Affiliated Hospital of Soochow University from August 2018 to September 2020 were analyzed retrospectively. The concentration of sBCMA in the patients was determined by BCMA ELISA and compared with the normal range. The results were compared with clinical efficacy, age, type, R-ISS stage, renal impairment, and humoral immune function. Results: The median age of the patients was 57 (31-73 years old), 86 (54.5%) males and 72 (45.5%) females, mainly IgG type, 81 patients(51.2%). SBCMA value M(Q1,Q3) was 76.50 (55.50, 94.40) μg/L, 100% higher than the upper limit of normal value. According to the efficacy evaluation, the patients were divided into complete remission(CR) group, very good partial remission(VGPR) group, partial remission(PR) group and ineffiecacy group, the results showed the level of sBCMA in CR group[80.10 (58.05, 96.90) vs 15.70 (9.85, 28.65) μg/L] and VGPR group[74.60 (52.20, 93.00) vs 17.20 (13.30, 38.80) μg/L]was significantly higher than that before treatment(all P<0.001), and there was no significant difference in PR group and ineffective group before and after treatment (all P>0.05).The amount of serum intact protein M protein was positively correlated with the level of sBCMA expression in newly diagnosed patients (r=0.22, P=0.040), and there was no correlation between the proportion of bone marrow plasma cells and sBCMA expression (r=0.07, P=0.449).The correlation between sBCMA levels at initial diagnosis and MM type[IgG type, IgA type vs light chain type:(78.6±3.5), (72.4±5.4) vs (83.8±6.9)μg/L], age[≥65 vs<65 years: (73.6±5.5)vs (79.3±3.1)μg/L], R-ISS stage[stage Ⅰ, Ⅱ vs Ⅲ:(80.2±3.1) vs (69.4±6.1)μg/L], renal impairment [Creatinine clearance rate (Ccr) ≤30 vs>30 ml/min:(81.6±4.8) vs (76.5±3.4)μg/L], and high-risk karyotype[high-risk vs standard-risk:(73.6±5.7) vs (80.2±3.2)μg/L] were not associated (all P>0.05). Expression levels of sBCMA were negatively correlated with IgM levels in MM patients (r=-0.39, P=0.002) and after treatment (r=-0.25, P=0.015). Conclusions: The expression of sBCMA in MM patients is a reliable indicator of the clinical efficacy of MM and is related to the occurrence of MM immune deficiency and recovery after treatment. sBCMA can be used as a new independent marker for monitoring and predicting the efficacy of MM patients.
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Affiliation(s)
- Z Yan
- Department of Hematology, First Affiliated Hospital of Soochow University, Suzhou 215000, China
| | - G H Chen
- Department of Hematology, First Affiliated Hospital of Soochow University, Suzhou 215000, China
| | - W Q Yao
- Department of Hematology, First Affiliated Hospital of Soochow University, Suzhou 215000, China
| | - L Z Yan
- Department of Hematology, First Affiliated Hospital of Soochow University, Suzhou 215000, China
| | - S Jin
- Department of Hematology, First Affiliated Hospital of Soochow University, Suzhou 215000, China
| | - J J Shang
- Department of Hematology, First Affiliated Hospital of Soochow University, Suzhou 215000, China
| | - X L Shi
- Department of Hematology, First Affiliated Hospital of Soochow University, Suzhou 215000, China
| | - D P Wu
- Department of Hematology, First Affiliated Hospital of Soochow University, Suzhou 215000, China
| | - C C Fu
- Department of Hematology, First Affiliated Hospital of Soochow University, Suzhou 215000, China
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19
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Ching PML, Zou X, Wu D, So RHY, Chen GH. Development of a wide-range soft sensor for predicting wastewater BOD 5 using an eXtreme gradient boosting (XGBoost) machine. Environ Res 2022; 210:112953. [PMID: 35182590 DOI: 10.1016/j.envres.2022.112953] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2021] [Revised: 02/06/2022] [Accepted: 02/10/2022] [Indexed: 06/14/2023]
Abstract
In wastewater monitoring, detecting extremely high pollutant concentrations is necessary to properly calibrate the treatment process. However, existing hardware sensors have a limited linear range which may fail to measure extremely high levels of pollutants; and likewise, the conventional "soft" model sensors are not suitable for the highly-skewed data distributions either. This study developed a new soft sensor by using eXtreme Gradient Boosting (XGBoost) machine learning to 'measure' the wastewater organics (in terms of 5-day biochemical oxygen demand (BOD5)). The soft sensor was tested on influent and effluent BOD5 of two different wastewater treatment plants to validate the results. The model results showed that XGBoost can detect these extreme values better than conventional soft sensors. This new soft sensor can function using a sparse input matrix via XGBoost's sparsity awareness algorithm - which can address the limitation of the conventional soft sensor with the fallibility of supporting hardware sensors even.
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Affiliation(s)
- P M L Ching
- Bioengineering Graduate Program, Department of Chemical and Biological Engineering, The Hong Kong University of Science and Technology, Hong Kong SAR, China
| | - X Zou
- Department of Civil and Environmental Engineering, The Hong Kong University of Science and Technology, Hong Kong SAR, China
| | - Di Wu
- Department of Civil and Environmental Engineering, The Hong Kong University of Science and Technology, Hong Kong SAR, China; Center for Environmental and Energy Research, Ghent University Global Campus, Republic of Korea; Department of Green Chemistry and Technology, Ghent University, Belgium.
| | - R H Y So
- Department of Industrial Engineering and Decision Analytics, The Hong Kong University of Science and Technology, Hong Kong SAR, China
| | - G H Chen
- Department of Civil and Environmental Engineering, The Hong Kong University of Science and Technology, Hong Kong SAR, China
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20
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Wang TJ, Dong JL, Yan S, Chen GH, Chen G, Zhao YY, Qian HY, Yuan JS, Song L, Qiao SB, Yang JG, Yang WX, Yang Y. [The short-term and long-term prognostic analysis in patients with chronic total occlusion acute non-ST segment elevation myocardial infarction]. Zhonghua Nei Ke Za Zhi 2022; 61:384-389. [PMID: 35340184 DOI: 10.3760/cma.j.cn112138-20210626-00445] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Objectives: To investigate the clinical impacts of chronic total occlusion (CTO) in acute non-ST segment elevation myocardial infarction (NSTEMI) patients underwent primary percutaneous coronary intervention (PCI). Methods: A total of 2 271 acute NSTEMI patients underwent primary PCI from China Acute Myocardial Infarction Registry were enrolled in this study and divided into the CTO group and the non-CTO group according to the angiography. The primary endpoint was in-hospital mortality and mortality during a 2-year follow-up. The secondary endpoint was major adverse cardiovascular events (MACE) including revascularization, death, re-myocardial infarction, heart failure readmission, stroke and major bleeding. Results: Thirteen-point four percent of the total acute NSTEMI patients had concurrent CTO. In-hospital mortality (3.6% vs. 1.4%, P<0.01) and 2-year mortality (9.0% vs. 5.1%, P<0.01) were significantly higher in the CTO group than those in the non-CTO group, respectively. Multiple regression analyses showed that chronic obstructive pulmonary disease (HR 7.28, 95%CI 1.50-35.35, P=0.01) was an independent risk factor of in-hospital mortality, and advanced age (HR 1.04, 95%CI 1.01-1.07, P<0.01), and low levels of ejection fraction (HR 0.95, 95%CI 0.93-0.98, P<0.01) were independent risk factors of 2-year mortality. CTO (HR1.67, 95%CI 1.10-2.54, P=0.02) was an independent risk factor of revascularization, but not a risk factor of mortality. Conclusions: Although acute NSTEMI patients concurrent with CTO had higher mortality, CTO was only an independent risk factor of revascularization, but not of mortality. Advanced age and low levels of ejection fraction were independent risk factors of long-term death among acute NSTEMI patients.
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Affiliation(s)
- T J Wang
- Coronary Heart Disease Center, Fuwai Hospital, National Center for Cardiovascular Diseases,Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100037, China
| | - J L Dong
- Coronary Heart Disease Center, Fuwai Hospital, National Center for Cardiovascular Diseases,Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100037, China
| | - S Yan
- Coronary Heart Disease Center, Fuwai Hospital, National Center for Cardiovascular Diseases,Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100037, China
| | - G H Chen
- Coronary Heart Disease Center, Fuwai Hospital, National Center for Cardiovascular Diseases,Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100037, China
| | - G Chen
- Medical Research and Biometrics Center, Fuwai Hospital, National Center for Cardiovascular Diseases, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100037, China
| | - Y Y Zhao
- Medical Research and Biometrics Center, Fuwai Hospital, National Center for Cardiovascular Diseases, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100037, China
| | - H Y Qian
- Coronary Heart Disease Center, Fuwai Hospital, National Center for Cardiovascular Diseases,Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100037, China
| | - J S Yuan
- Coronary Heart Disease Center, Fuwai Hospital, National Center for Cardiovascular Diseases,Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100037, China
| | - L Song
- Coronary Heart Disease Center, Fuwai Hospital, National Center for Cardiovascular Diseases,Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100037, China
| | - S B Qiao
- Coronary Heart Disease Center, Fuwai Hospital, National Center for Cardiovascular Diseases,Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100037, China
| | - J G Yang
- Coronary Heart Disease Center, Fuwai Hospital, National Center for Cardiovascular Diseases,Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100037, China
| | - W X Yang
- Coronary Heart Disease Center, Fuwai Hospital, National Center for Cardiovascular Diseases,Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100037, China
| | - Yuejin Yang
- Coronary Heart Disease Center, Fuwai Hospital, National Center for Cardiovascular Diseases,Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100037, China
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21
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Wang J, Zhang D, Xu RX, Yam C, Chen G, Zheng X. Improving Density Functional Prediction of Molecular Thermochemical Properties with a Machine-Learning-Corrected Generalized Gradient Approximation. J Phys Chem A 2022; 126:970-978. [PMID: 35113552 DOI: 10.1021/acs.jpca.1c10491] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The past decade has seen an increasing interest in designing sophisticated density functional approximations (DFAs) by integrating the power of machine learning (ML) techniques. However, application of the ML-based DFAs is often confined to simple model systems. In this work, we construct an ML correction to the widely used Perdew-Burke-Ernzerhof (PBE) functional by establishing a semilocal mapping from the electron density and reduced gradient to the exchange-correlation energy density. The resulting ML-corrected PBE is immediately applicable to any real molecule and yields significantly improved heats of formation while preserving the accuracy for other thermochemical and kinetic properties. This work highlights the prospect of combining the power of data-driven ML methods with physics-inspired derivations for reaching the heaven of chemical accuracy.
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Affiliation(s)
- JingChun Wang
- Hefei National Laboratory for Physical Sciences at the Microscale & Synergetic Innovation Center of Quantum Information and Quantum Physics & CAS Center for Excellence in Nanoscience, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - DaDi Zhang
- National Synchrotron Radiation Laboratory, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Rui-Xue Xu
- Hefei National Laboratory for Physical Sciences at the Microscale & Synergetic Innovation Center of Quantum Information and Quantum Physics & CAS Center for Excellence in Nanoscience, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - ChiYung Yam
- Beijing Computational Science Research Center, Beijing 100193, China
| | - GuanHua Chen
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Xiao Zheng
- Hefei National Laboratory for Physical Sciences at the Microscale & Synergetic Innovation Center of Quantum Information and Quantum Physics & CAS Center for Excellence in Nanoscience, University of Science and Technology of China, Hefei, Anhui 230026, China
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22
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Li W, Wang D, Yang Z, Zhang H, Hu L, Chen G. DeepNCI: DFT Noncovalent Interaction Correction with Transferable Multimodal Three-Dimensional Convolutional Neural Networks. J Chem Inf Model 2021; 62:5090-5099. [PMID: 34958566 DOI: 10.1021/acs.jcim.1c01305] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
A multimodal deep learning model, DeepNCI, is proposed for improving noncovalent interactions (NCIs) calculated via density functional theory (DFT). DeepNCI is composed of a three-dimensional convolutional neural network (3D CNN) for abstracting critical and comprehensive features from 3D electron density, and a neural network for modeling one-dimensional quantum chemical properties. By merging features from two networks, DeepNCI is able to reduce the root-mean-square error of DFT-calculated NCI from 1.19 kcal/mol to ∼0.2 kcal/mol for a NCI molecular database (>1000 molecules). The representativeness of the joint features can be visualized by t-distributed stochastic neighbor embedding (t-SNE), where they can distinguish categorized NCI systems quite well. Therefore, the fused model performs better than its component networks. In addition, the 3D CNN takes electron density as inputs that are in the same range, despite the size of molecular systems, so it can promote model applicability and transferability. To clarify the applicability of DeepNCI, an application domain (AD) has been defined with merged features using the K-nearest-neighbor method. The calculations for external test sets are shown that AD can properly monitor the reliability for a prediction. The model transferability is tested with a small database of homolysis bond dissociation energy including only dozens of samples. With NCI database pretrained parameters, the same or better performance than the reported results is achieved by transfer learning. This suggests that the DeepNCI model is transferable and it may transfer to other relative tasks, which possibly can resolve some small sampling problems. The source code of DeepNCI can be freely accessed at https://github.com/wenzelee/DeepNCI.
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Affiliation(s)
- Wenze Li
- School of Information Science and Technology, Northeast Normal University, Changchun, 130117, China
| | - Donghan Wang
- School of Information Science and Technology, Northeast Normal University, Changchun, 130117, China
| | - Zirui Yang
- School of Information Science and Technology, Northeast Normal University, Changchun, 130117, China
| | - Huijie Zhang
- School of Information Science and Technology, Northeast Normal University, Changchun, 130117, China
| | - LiHong Hu
- School of Information Science and Technology, Northeast Normal University, Changchun, 130117, China
| | - GuanHua Chen
- Department of Chemistry, The University of Hong Kong, Hong Kong S.A.R., China
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23
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Abstract
Carrier-envelope-phase (CEP) stable optical pulses combined with state-of-the-art scanning tunneling microscopy (STM) can track and control ultrafast electronic tunneling currents. On the basis of nonequilibrium Green's function formalism, we present a time and frequency domain theoretical study of CEP-stable pulse-induced tunneling currents between an STM tip and a metal substrate. It is revealed that the experimentally observed phase shift between the maximum tunneling current and maximum electric field is caused by the third-order response to the electric field. The shift is also found to be sensitive to the duration of pulses. The tunneling process can thus be precisely manipulated by varying the phase and duration of these pulses.
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Affiliation(s)
- Ziyang Hu
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Pokfulam, Hong Kong SAR
| | - YanHo Kwok
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Pokfulam, Hong Kong SAR
- QuantumFabless Limited, Sha Tin, Hong Kong SAR
| | - GuanHua Chen
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Pokfulam, Hong Kong SAR
- Hong Kong Quantum AI Lab Limited, Pak Shek Kok, Hong Kong SAR
| | - Shaul Mukamel
- Department of Chemistry and Physics & Astronomy, University of California, Irvine, California 92617, United States
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Yan H, Zhao J, Liu DJ, Chen GH. [Analysis on human papillomavirus infection in 2 110 patients with cervical cancer in Henan province]. Zhonghua Liu Xing Bing Xue Za Zhi 2021; 42:914-917. [PMID: 34814488 DOI: 10.3760/cma.j.cn112338-20200729-00992] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Objective: To explore human papillomavirus (HPV) infection status in 2 110 patients with cervical cancer in Henan province and analyze the main infection subtypes. Methods: A total of 2 110 patients with cervical cancer were detected for HPV subtypes by flow-through hybridization after PCR. The results were analyzed. Results: Among 2 110 patients with cervical cancer, 1 856 were detected to be HPV positive and the infection rate was 87.96%(95%CI: 86.57%-89.35%). The top six genotypes were HPV16, 58, 18, 52, 35 and 33. Single infection was the main type of infection in HPV positive cervical cancer patients (77.48%), and double infection was the second type infection(16.76%). The infection rate of HPV16 was 60.19%, occupying a predominant position in single or multiple infections. Among HPV positive cervical cancer patients, 1 599 cases were detected to be infected with high-risk subtypes and covered by nine-valence HPV vaccine, and the coverage rate reached 86.15% (1 599/1 856). Cervical cancer patients were mainly distributed in age group 40- years. The main HPV subtypes of cervical cancer patients were different among different age groups, but HPV16 subtype was in a predominant position in any age group. Conclusions: The main subtypes of HPV infection were HPV16, 58, 18, 52, 35 and 33 in cervical cancer patients in this study. The main infection type was single infection. There were more cervical cancer patients in age group 40- years.
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Affiliation(s)
- H Yan
- Department of Blood Transfusion, Henan Provincial People΄s Hospital, Zhengzhou 450003, China
| | - J Zhao
- Department of Clinical Laboratory, Henan Provincial People΄s Hospital, Zhengzhou 450003, China
| | - D J Liu
- Department of Clinical Laboratory, Henan Provincial People΄s Hospital, Zhengzhou 450003, China
| | - G H Chen
- Department of Clinical Laboratory, Henan Provincial People΄s Hospital, Zhengzhou 450003, China
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25
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Hu Z, Xu Z, Chen G. Vibration-mediated resonant charge separation across the donor-acceptor interface in an organic photovoltaic device. J Chem Phys 2021; 154:154703. [PMID: 33887946 DOI: 10.1063/5.0049176] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Examination of a recent open-system Ehrenfest dynamics simulation suggests that a vibration-mediate resonance may play a pivotal role in the charge transfer across a donor-acceptor interface in an organic solar cell. Based on this, a concise dissipative two-level electronic system coupled to a molecular vibrational mode is proposed and solved quantum mechanically. It is found that the charge transfer is enhanced substantially when the vibrational energy quanta is equal to the electronic energy loss across the interface. This vibration-mediate resonant charge transfer process is ultrafast, occurring within 100 fs, comparable to experimental findings. The open-system Ehrenfest dynamics simulation of the two-level model is carried out, and similar results are obtained, which confirms further that the earlier open-system Ehrenfest dynamics simulation indeed correctly predicted the occurrence of the resonant charge transfer across the donor-acceptor interface.
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Affiliation(s)
- Ziyang Hu
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Ziyao Xu
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - GuanHua Chen
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, China
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26
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Guo X, Chen GH. Capillary electrophoresis-based methodology for screening of oligonucleotide aptamers. Biomed Chromatogr 2021; 35:e5109. [PMID: 33660332 DOI: 10.1002/bmc.5109] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2020] [Revised: 02/25/2021] [Accepted: 02/26/2021] [Indexed: 01/28/2023]
Abstract
As a new molecular recognition element, oligonucleotide aptamer not only has higher affinity and specificity to target molecules, but also has the advantages of wide recognition range, in vitro synthesis and chemical stability compared with conventional antibodies. Since a kind of screening method termed systematic evolution of ligands by exponential enrichment (SELEX) was reported, scientists have extensively researched the methodology of how to highly and efficiently screen out aptamers from a library consisting of a large number of random oligonucleotides. Certainly capillary electrophoresis-based screening methodologies, including nonequilibrium capillary electrophoresis of equilibrium mixtures, equilibrium capillary electrophoresis of equilibrium mixtures, non-SELEX, ideal-filter capillary electrophoresis, capillary transient isotachophoresis, etc., are revolutionary. Compared with conventional SELEX, these capillary electrophoresis-based methodologies show incomparable advantages such as the single-round screening of aptamers and increased successful screening rate. Methodology studies on the screening process of aptamers are comprehensively reviewed.
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Affiliation(s)
- Xin Guo
- College of Food and Bioengineering, Jiangsu University, Zhenjiang, China.,Periodicals Agency of Jiangsu University, Zhenjiang, China
| | - Guan-Hua Chen
- College of Food and Bioengineering, Jiangsu University, Zhenjiang, China
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27
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Yang CY, Chiang PH, Yen CF, Shih IH, Chen GH. Diverse and rare clinical manifestations of Langerhans cell histiocytosis. DERMATOL SIN 2021. [DOI: 10.4103/ds.ds_12_21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
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28
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Huang T, Zhu L, Zhang SF, Hu XY, Cheng P, Luan SQ, Chen GH. A rare case of ring chromosome 3 syndrome. J BIOL REG HOMEOS AG 2020; 34:13. [PMID: 32090537 DOI: 10.23812/19-277-l] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Key Words] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- T Huang
- Department of Pediatrics, The First Affiliated Hospital of Nanchang University, Nanchang, China
| | - L Zhu
- Department of Pediatrics, The First Affiliated Hospital of Nanchang University, Nanchang, China
| | - S F Zhang
- Department of Pediatrics, The First Affiliated Hospital of Nanchang University, Nanchang, China
| | - X Y Hu
- Department of Pediatrics, The First Affiliated Hospital of Nanchang University, Nanchang, China
| | - P Cheng
- Department of Pediatrics, The First Affiliated Hospital of Nanchang University, Nanchang, China
| | - S Q Luan
- Department of Pathology, The First Affiliated Hospital of Nanchang University, Nanchang, China
| | - G H Chen
- Department of Pediatrics, The First Affiliated Hospital of Nanchang University, Nanchang, China
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29
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Yang H, Tan Q, Chen GH, Chen JS, Fu Z, Ren FL, Luo XY, Wang H. Plasma retinol as a predictive biomarker of disease activity and response to acitretin monotherapy in children with generalized pustular psoriasis. J Eur Acad Dermatol Venereol 2020; 34:e270-e272. [PMID: 31991497 DOI: 10.1111/jdv.16244] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- H Yang
- Department of Dermatology, Children's Hospital of Chongqing Medical University, Chongqing, China.,Chongqing Key Laboratory of Pediatrics, Children's Hospital of Chongqing Medical University, Chongqing, China
| | - Q Tan
- Chongqing Key Laboratory of Pediatrics, Children's Hospital of Chongqing Medical University, Chongqing, China
| | - G H Chen
- Ministry of Education Key Laboratory of Child Development and Disorders, Children's Hospital of Chongqing Medical University, Chongqing, China
| | - J S Chen
- National Clinical Research Center for Child Health and Disorders, Children's Hospital of Chongqing Medical University, Chongqing, China
| | - Z Fu
- China International Science and Technology Cooperation Base of Child Development and Critical Disorders, Children's Hospital of Chongqing Medical University, Chongqing, China
| | - F L Ren
- Department of Dermatology, Children's Hospital of Chongqing Medical University, Chongqing, China
| | - X Y Luo
- National Clinical Research Center for Child Health and Disorders, Children's Hospital of Chongqing Medical University, Chongqing, China
| | - H Wang
- Department of Dermatology, Children's Hospital of Chongqing Medical University, Chongqing, China.,National Clinical Research Center for Child Health and Disorders, Children's Hospital of Chongqing Medical University, Chongqing, China
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30
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Yao Y, Yang YZ, Gu TT, Cao ZF, Zhao WM, Qin HR, Xu Q, Chen GH. Comparison of the broody behavior characteristics of different breeds of geese. Poult Sci 2020; 98:5226-5233. [PMID: 31250013 DOI: 10.3382/ps/pez366] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2019] [Accepted: 06/10/2019] [Indexed: 01/18/2023] Open
Abstract
A low laying performance in goose is one of the key factors preventing the industrial development, and the laying performance is related to broody behavior. However, the characteristics of broody behavior in geese remain unclear. In this study, the total 144 geese (300 day old), including Zhedong geese (Anser cygnoides), Sichuan geese (Anser cygnoides), and Carlos geese (Anser anser) were selected and assigned to 1 of 3 groups/breed (including 4♂+12♀). Laying and broody behaviors were recorded using the infrared video cameras from 2016 November 11 to 2017 June 15. The broody behavior was detected in 19.4% of Carlos geese, 33.3% of Sichuan geese, and 100% of Zhedong geese. Different goose breeds showed similar behavior characteristics. The low frequency of feeding, drinking, and low body weight were observed in the middle of broodiness. As the brooding progressed, the body temperature showed a downward trend and then recovered, whereas no difference was observed in Carlos goose. In addition, the plasma hormone concentration from different breeds and stages of broodiness were compared. The contents of FSH (follicle-stimulating hormone) and LH (luteinizing hormone) in geese were greater in the laying stage than that in the broody stage. Fewer FSH and LH were detected in Zhedong geese and Carlos geese, more in Sichuan geese. In broody goose, the PRL (prolactin) concentrations of the 3 goose breeds peaked in the middle of broodiness, and greater PRL was detected in Sichuan geese than those in Carlos geese and Zhedong geese. Finally, we compared egg production between the broody and non-broody geese in the observation period. The egg production of broody Carlos geese was 27, which was significantly higher than non-broody geese (14 eggs), while in Sichuan geese there was no significant difference between broody (24 eggs) and non-broody geese (26 eggs). Finally, the higher egg production was found with the more broody times in Zhedong geese. Taken together, although the different goose breeds showed similar broody behavior characteristics, the broody rate and hormone secretion were dissimilar, and the Zhedong geese exhibited strong broody feature.
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Affiliation(s)
- Y Yao
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu Province 225009, China
| | - Y Z Yang
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu Province 225009, China
| | - T T Gu
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu Province 225009, China
| | - Z F Cao
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu Province 225009, China
| | - W M Zhao
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu Province 225009, China
| | - H R Qin
- Jiangsu Animal Husbandry & Veterinary College, Taizhou, Jiangsu Province 225300, China
| | - Q Xu
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu Province 225009, China
| | - G H Chen
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu Province 225009, China
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31
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Xu Z, Zhou Y, Groß L, De Sio A, Yam CY, Lienau C, Frauenheim T, Chen G. Coherent Real-Space Charge Transport Across a Donor-Acceptor Interface Mediated by Vibronic Couplings. Nano Lett 2019; 19:8630-8637. [PMID: 31698905 DOI: 10.1021/acs.nanolett.9b03194] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
There is growing experimental and theoretical evidence that vibronic couplings, couplings between electronic and nuclear degrees of freedom, play a fundamental role in ultrafast excited-state dynamics in organic donor-acceptor hybrids. Whereas vibronic coupling has been shown to support charge separation at donor-acceptor interfaces, so far, little is known about its role in the real-space transport of charges in such systems. Here we theoretically study charge transport in thiophene:fullerene stacks using time-dependent density functional tight-binding theory combined with Ehrenfest molecular dynamics for open systems. Our results reveal coherent oscillations of the charge density between neighboring donor sites, persisting for ∼200 fs and promoting charge transport within the polymer stacks. At the donor-acceptor interface, vibronic wave packets are launched, propagating coherently over distances of more than 3 nm into the acceptor region. This supports previous experimental observations of long-range ballistic charge-carrier motion in organic photovoltaic systems and highlights the importance of vibronic coupling engineering as a concept for tailoring the functionality of hybrid organic devices.
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Affiliation(s)
- Ziyao Xu
- Department of Chemistry , University of Hong Kong , Pokfulam Road , Hong Kong SAR , China
| | - Yi Zhou
- Department of Chemistry , University of Hong Kong , Pokfulam Road , Hong Kong SAR , China
| | - Lynn Groß
- Bremen Center for Computational Materials Science , University of Bremen , Am Fallturm 1 , 28359 Bremen , Germany
| | - Antonietta De Sio
- Institut für Physik and Center of Interface Science , Carl von Ossietzky Universität , Oldenburg 26129 , Germany
| | - Chi Yung Yam
- Beijing Computational Science Research Center , Beijing 100084 , China
| | - Christoph Lienau
- Institut für Physik and Center of Interface Science , Carl von Ossietzky Universität , Oldenburg 26129 , Germany
- Research Center Neurosensory Science , Carl von Ossietzky Universität , Oldenburg 26111 , Germany
| | - Thomas Frauenheim
- Bremen Center for Computational Materials Science , University of Bremen , Am Fallturm 1 , 28359 Bremen , Germany
| | - GuanHua Chen
- Department of Chemistry , University of Hong Kong , Pokfulam Road , Hong Kong SAR , China
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32
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Zhou Y, Wu J, Chen S, Chen G. Toward the Exact Exchange-Correlation Potential: A Three-Dimensional Convolutional Neural Network Construct. J Phys Chem Lett 2019; 10:7264-7269. [PMID: 31690079 DOI: 10.1021/acs.jpclett.9b02838] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
A deep neural network is constructed to yield in principle exact exchange-correlation potential. It requires merely the electron densities of small molecules and ions and yet can determine the exchange-correlation potentials of large molecules. We train and validate the neural network based on the data for H2 and HeH+ and subsequently determine the ground-state electron density of stretched HeH+, linear H3+, and H-He-He-H2+. Moreover, the deep neural network is proven to model the van der Waals interaction by being trained and validated on a data set containing He2. Comparisons to B3LYP are given to illustrate the accuracy and transferability of the neural network.
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Affiliation(s)
- Yi Zhou
- Department of Chemistry , The University of Hong Kong , Hong Kong S.A.R. , China
| | - Jiang Wu
- Department of Chemistry , The University of Hong Kong , Hong Kong S.A.R. , China
| | - Shuguang Chen
- Department of Chemistry , The University of Hong Kong , Hong Kong S.A.R. , China
| | - GuanHua Chen
- Department of Chemistry , The University of Hong Kong , Hong Kong S.A.R. , China
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33
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Yang YZ, Yao Y, Cao ZF, Gu TT, Xu Q, Chen GH. Histological characteristics of follicles and reproductive hormone secretion during ovarian follicle development in laying geese. Poult Sci 2019; 98:6063-6070. [DOI: 10.3382/ps/pez278] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2018] [Accepted: 05/01/2019] [Indexed: 11/20/2022] Open
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34
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Abstract
Using a simulation protocol that mimics ultrafast scanning tunneling microscopy (STM) experiments, we demonstrate how pump-probe ultrafast STM may be used to image electron migration in molecules. Two pulses are applied to a model system, and the time-integrated current through the tip is calculated versus the delay time and tip position to generate STM images. With suitable pump and probe parameters, the images can track charge migration with atomistic spatial and femtosecond temporal resolutions.
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Affiliation(s)
- YanHo Kwok
- Department of Chemistry , The University of Hong Kong , Pofkulam Road , Hong Kong
- QuantumFabless Limited , Sha Tin , Hong Kong
| | - GuanHua Chen
- Department of Chemistry , The University of Hong Kong , Pofkulam Road , Hong Kong
| | - Shaul Mukamel
- Department of Chemistry and Physics and Astronomy , University of California , Irvine , California 92617 , United States
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35
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Ning Y, Chen GH, Yang JG, Yang YJ, Tian CY, Wang Y, Xu HY. P4621Incidence, management, and in-hospital mortality of cardiogenic shock complicating ST-elevated myocardial infarction in China: insights from the China Acute Myocardial Infarction Registry. Eur Heart J 2019. [DOI: 10.1093/eurheartj/ehz745.1003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Abstract
Background and purpose
Limited data is available on the situation of cardiogenic shock (CS) complicating ST-elevated myocardial infarction (STEMI) in China. This study aims to disclose the incidence, management and in-hospital mortality (IHM) of patients with STEMI complicated by CS (STEMICS) in China and at different levels of hospitals.
Methods
We queried the 2013–2016 China Acute Myocardial Infarction (CAMI) registry databases to identify patients with STEMI and/or CS (developing before or during hospitalization). The overall and different hospital-level incidence of STEMICS and IHM were analyzed.
Results
Of 28230 STEMI patients, 2273 patients (8.05%) had CS. The incidence of STEMICS in provincial, prefectural and county-level hospitals were 5.23%, 8.46% and 13.76% (p<0.001), respectively. Primary PCI (PPCI) was performed on 675 patients (29.7%) with STEMICS. The proportion of STEMICS patients undertaking PPCI in provincial, prefectural and county-level hospitals were 46.53%, 31.48% and 8.00% (p<0.001). The overall IHM rate of patients with STEMICS was 49.8% with no difference among the different hospital levels. However, the IHM rate of prehospital STEMICS in county-level hospitals were significantly higher than that in prefectural and provincial hospitals (42.3% versus 33.3% and 28.3%, respectively; p<0.01), while that of in-hospital STEMICS were similar among the different hospital levels (66.5%, 66.9% and 62.2%; provincial, prefectural and county-level hospitals, respectively). After adjustment, the difference of IHM in prehospital STEMICS between county-level hospitals and the other two levels no longer existed. However, once PPCI was excluded from the multivariable adjustment model, the IHM of prehospital STEMICS remained higher in county-level hospitals.
Table 1. Differences in IHM of prehospital STEMICS between county-level hospitals and other two levels of hospitals before or after adjustment Provincial hospitals/ County-level hospitals Prefectural hospitals/ County-level hospitals Unadjusted OR (95% CI) 0.54 (0.36, 0.80); P=0.0019 0.68 (0.49, 0.94); P=0.0193 Adjusted OR* (95% CI) 0.63 (0.34, 1.17); P=0.1455 0.64 (0.38, 1.08); P=0.0962 Adjusted OR† (95% CI) 0.49 (0.27, 0.90); P=0.0214 0.54 (0.32, 0.91); P=0.0198 IHM: in-hospital mortality; OR: odd ratio; CI: confidence interval. *Adjusted for baseline characteristics, in-hospital medications and primary PCI; †adjusted for baseline characteristics and in-hospital medications.
Figure 1. Flowchart
Conclusion
The overall incidence and IHM rate of STEMICS in China are still high. Especially, higher IHM rate of prehospital STEMICS is observed in county-level hospitals, which may be attributed to the lower implementation rate of PPCI.
Acknowledgement/Funding
CAMS Innovation Fund for Medical Sciences (CIFMS) (2016-I2M-1-009)
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Affiliation(s)
- Y Ning
- Fuwai Hospital- Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - G H Chen
- Fuwai Hospital- Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - J G Yang
- Fuwai Hospital- Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Y J Yang
- Fuwai Hospital- Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - C Y Tian
- Fuwai Hospital- Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - Y Wang
- Fuwai Hospital- Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
| | - H Y Xu
- Fuwai Hospital- Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China
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36
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Wu CQ, Chen GH. Detection of synergistic effect of superoxide dismutase and jujubosides on scavenging superoxide anion radical by capillary electrophoresis. Biomed Chromatogr 2019; 33:e4630. [PMID: 31243785 DOI: 10.1002/bmc.4630] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2019] [Revised: 06/03/2019] [Accepted: 06/21/2019] [Indexed: 11/05/2022]
Abstract
A new capillary electrophoresis method was developed to study the synergistic effect of superoxide dismutase and jujuboside A or B on scavenging superoxide anion radical in serum matrix respectively, in which superoxide anion radical was generated from pyrogallol autoxidation. The electrophoresis conditions, and the factors affecting the productive rate of purpurogallin, such as pyrogallol autoxidation product and the activity of superoxide dismutase, were optimized. Under optimal conditions, the content of superoxide dismutase in Gibco newborn calf serum was 7.06 mg/L, RSD was 2.01% and the average recovery was 98.4%. The values of IC50 for jujuboside A and B in the serum matrix were 157.67 and 31.60 mg/L respectively, and they both had synergy on scavenging superoxide anion radical with superoxide dismutase, but there was no the dose-dependency on this synergy.
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Affiliation(s)
- Chuan-Qin Wu
- College of Food and Bioengineering, Jiangsu University, Zhenjiang, China
| | - Guan-Hua Chen
- College of Food and Bioengineering, Jiangsu University, Zhenjiang, China
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37
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Du X, Ren JD, Xu XQ, Chen GH, Huang Y, Du JP, Tao ZR, Cai ZX, Lu LZ, Yang H. Comparative transcriptome analysis reveals genes related to the yolk ratio of duck eggs. Anim Genet 2019; 50:484-492. [PMID: 31260130 DOI: 10.1111/age.12820] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/16/2019] [Indexed: 11/28/2022]
Abstract
Yolk ratio is an important production index in the salted duck egg industry. Yolk constituents are deposited during development of follicles. However, the molecular mechanism responsible for different yolk ratios in laying ducks remains elusive. In this study, Shaoxing ducks laying eggs with different yolk ratios were chosen for an analysis of liver and ovary transcriptome information. Twelve libraries were constructed and generated an average of 58.5 million clean reads per library, of which 69% of clean reads from liver and 65% of clean reads from ovary were mapped to a reference genome. Between cross-phenotype groups, a total of 250 and 230 differently expressed genes (DEGs) were identified in liver and ovary respectively, of which 101 and 50 DEGs respectively were characterized. Several DEGs were detected, among which HMGCS1, HMGCR, FDFT1, (DHCR7), (STARD4), CYP46A1 and LPIN3 are involved in cholesterol metabolism-related pathways; KIAA0319, STARD4, AP1S3, SH3GL2 and CAV2 are involved in vesicular transport in the liver; and ELOVL2 and PSD2 are involved in fatty acid elongation and endocytosis in the ovary. High yolk-ratio ducks had higher activity for cholesterol synthesis and molecular trafficking. The identification of candidate genes greatly advances the understanding of the genetic basis of the formation of different yolk ratios.
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Affiliation(s)
- X Du
- Institute of Animal Husbandry and Veterinary Science, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, Zhejiang, China
| | - J D Ren
- Institute of Animal Husbandry and Veterinary Science, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, Zhejiang, China
| | - X Q Xu
- Institute of Animal Husbandry and Veterinary Science, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, Zhejiang, China
| | - G H Chen
- College of Animal Science and Technology, Yangzhou University, Yangzhou, 225009, Jiangsu, China
| | - Y Huang
- Institute of Animal Husbandry and Veterinary Science, Fujian Academy of Agricultural Science, Fuzhou, 350100, Fujian, China
| | - J P Du
- Institute of Animal Husbandry and Veterinary Science, Hubei Academy of Agricultural Science, Wuhan, 430064, Hubei, China
| | - Z R Tao
- Institute of Animal Husbandry and Veterinary Science, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, Zhejiang, China
| | - Z X Cai
- College of Food Science and Technology, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
| | - L Z Lu
- Institute of Animal Husbandry and Veterinary Science, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, Zhejiang, China
| | - H Yang
- Institute of Quality and Standards for Agro-products, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, Zhejiang, China
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38
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Yan XL, Li YY, He LL, Wu JL, Tang XY, Chen GH, Mai KJ, Wu RT, Li QN, Chen YH, Sun Y, Ma JY. 12 novel atypical porcine pestivirus genomes from neonatal piglets with congenital tremors: A newly emerging branch and high prevalence in China. Virology 2019; 533:50-58. [PMID: 31103885 DOI: 10.1016/j.virol.2019.04.010] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2018] [Revised: 04/23/2019] [Accepted: 04/23/2019] [Indexed: 10/26/2022]
Abstract
Atypical porcine pestivirus (APPV), a newly discovered member of the genus Pestivirus, is considered to be associated with congenital tremors (CT) in piglets. From June 2016 to January 2018, 440 serum and tissue samples from CT-affected piglets in Anhui, Guangdong and Guangxi provinces were collected to detect APPV. The results showed a high level of 63.4% preference for APPV in 27 swine farms and complicated co-infection cases between APPV and other 12 swine viruses. Meanwhile, 12 novel APPV genomes were screened and identified. Results showed that complete genomes, Npro and NS5A genes of these novel 12 APPV sequences revealed 80.5%-99.8%, 78%-100% and 76.9%-99.8% nucleotide identities, respectively. Phylogenetic analyses based on sequences of full-length genomes, Npro and NS5A genes of APPV indicated three well-defined clades including a newly emerging branch in China. This study provides novel epidemiological information of APPV in China.
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Affiliation(s)
- X L Yan
- College of Animal Science, South China Agricultural University, Guangzhou, China; Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou, Guangdong, China
| | - Y Y Li
- College of Animal Science, South China Agricultural University, Guangzhou, China; Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou, Guangdong, China
| | - L L He
- College of Animal Science, South China Agricultural University, Guangzhou, China; Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou, Guangdong, China
| | - J L Wu
- College of Animal Science, South China Agricultural University, Guangzhou, China; Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou, Guangdong, China
| | - X Y Tang
- College of Animal Science, South China Agricultural University, Guangzhou, China; Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou, Guangdong, China
| | - G H Chen
- College of Animal Science, South China Agricultural University, Guangzhou, China; Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou, Guangdong, China
| | - K J Mai
- College of Animal Science, South China Agricultural University, Guangzhou, China; Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou, Guangdong, China
| | - R T Wu
- College of Animal Science, South China Agricultural University, Guangzhou, China; Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou, Guangdong, China
| | - Q N Li
- College of Animal Science, South China Agricultural University, Guangzhou, China; Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou, Guangdong, China
| | - Y H Chen
- College of Animal Science, South China Agricultural University, Guangzhou, China
| | - Y Sun
- College of Animal Science, South China Agricultural University, Guangzhou, China; Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou, Guangdong, China.
| | - J Y Ma
- College of Animal Science, South China Agricultural University, Guangzhou, China; Key Laboratory of Animal Health Aquaculture and Environmental Control, Guangzhou, Guangdong, China.
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Li W, Miao W, Cui J, Fang C, Su S, Li H, Hu L, Lu Y, Chen G. Efficient Corrections for DFT Noncovalent Interactions Based on Ensemble Learning Models. J Chem Inf Model 2019; 59:1849-1857. [PMID: 30912940 DOI: 10.1021/acs.jcim.8b00878] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
Machine learning has exhibited powerful capabilities in many areas. However, machine learning models are mostly database dependent, requiring a new model if the database changes. Therefore, a universal model is highly desired to accommodate the widest variety of databases. Fortunately, this universality may be achieved by ensemble learning, which can integrate multiple learners to meet the demands of diversified databases. Therefore, we propose a general procedure for learning ensemble establishment based on noncovalent interactions (NCIs) databases. Additionally, accurate NCI computation is quite demanding for first-principles methods, for which a competent machine learning model can be an efficient solution to obtain high NCI accuracy with minimal computational resources. In regard to these aspects, multiple schemes of ensemble learning models (Bagging, Boosting, and Stacking frameworks), are explored in this study. The models are based on various low levels of density functional theory (DFT) calculations for the benchmark databases S66, S22, and X40. All NCIs computed by the DFT calculations can be improved to high-level accuracy (root-mean-square error RMSE = 0.22 kcal/mol in contrast to CCSD(T)/CBS benchmark) by established ensemble learning models. Compared with single machine learning models, ensemble models show better accuracy (RMSE of the best model is further lowered by ∼25%), robustness and goodness-of-fit according to evaluation parameters suggested by the OECD. Among ensemble learning models, heterogeneous Stacking ensemble models show the most valuable application potential. The standardized procedure of constructing learning ensembles has been well utilized on several NCI data sets, and this procedure may also be applicable for other chemical databases.
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Affiliation(s)
- Wenze Li
- School of Information Science and Technology , Northeast Normal University , Changchun , 130117 , China
| | - Wei Miao
- School of Information Science and Technology , Northeast Normal University , Changchun , 130117 , China
| | - Jingxia Cui
- Institute of Functional Material Chemistry, Faculty of Chemistry , Northeast Normal University , Changchun , 130024 , China
| | - Chao Fang
- School of Information Science and Technology , Northeast Normal University , Changchun , 130117 , China
| | - Shunting Su
- School of Information Science and Technology , Northeast Normal University , Changchun , 130117 , China
| | - Hongzhi Li
- School of Information Science and Technology , Northeast Normal University , Changchun , 130117 , China
| | - LiHong Hu
- School of Information Science and Technology , Northeast Normal University , Changchun , 130117 , China
| | - Yinghua Lu
- School of Information Science and Technology , Northeast Normal University , Changchun , 130117 , China.,Institute of Functional Material Chemistry, Faculty of Chemistry , Northeast Normal University , Changchun , 130024 , China
| | - GuanHua Chen
- Department of Chemistry , The University of Hong Kong , Hong Kong , China
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Zhang Y, Yao Y, Wang MM, Yang YZ, Gu TT, Cao ZF, Lu L, An C, Wang JW, Chen GH, Xu Q, Zhao WM. Comparisons in geese of the courtship, mating behaviors and fertility of the Carlos and Sichuan breeds and the breed crosses. Anim Reprod Sci 2019; 204:86-94. [PMID: 30890291 DOI: 10.1016/j.anireprosci.2019.03.008] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2018] [Revised: 02/28/2019] [Accepted: 03/14/2019] [Indexed: 10/27/2022]
Abstract
The Chinese goose originated from the swan goose (Anser cygnoides) and the European goose originated from the greylag goose (Anser anser). The Chinese and European geese have the potential to crossbreed. Whether interspecific differences in mating behaviors affect successful hybridization is unknown. In this study, 10-month-old Carlos geese (n = 120; Anser anser) and Sichuan geese (Anser cygnoides) were selected, and 12 multi-male parent families (3♂+12♀) were established. The courtship and mating behaviors of pure and cross-bred combinations of the Carlos and Sichuan geese were recorded using video cameras. Initiative courtship by males was the main type of courtship. Fixed mating, mating interference, and uncooperative mating were common in the flocks. The frequencies of some courtship and mating behaviors were less in the cross-bred groups (Carlos ganders × Sichuan geese, Sichuan ganders × Carlos geese) compared with the Sichuan pure-bred groups (P < 0.05). The Carlos male geese had some unique mating behaviors (i.e., one-to-one mating, formation of distinct hierarchies, and competition interference). The fertility rate had a significant correlation with the frequency of successful mating (rp = 0.992, P < 0.05), rather than with the courtship behavior. These results indicate there were lesser frequencies of courtship and successful matings in the cross-breeding than purebreeding groups. Furthermore, the fertility rate depended largely on the successful mating behavior and was independent of the courtship behavior.
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Affiliation(s)
- Y Zhang
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu Province, 225009, China.
| | - Y Yao
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu Province, 225009, China.
| | - M M Wang
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu Province, 225009, China.
| | - Y Z Yang
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu Province, 225009, China.
| | - T T Gu
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu Province, 225009, China.
| | - Z F Cao
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu Province, 225009, China.
| | - L Lu
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu Province, 225009, China.
| | - C An
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu Province, 225009, China.
| | - J W Wang
- College of Animal Science and Technology, Sichuan Agricultural University, Yaan, Sichuan, 625014, China.
| | - G H Chen
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu Province, 225009, China.
| | - Q Xu
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu Province, 225009, China.
| | - W M Zhao
- College of Animal Science and Technology, Yangzhou University, Yangzhou, Jiangsu Province, 225009, China.
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Tang H, Ding F, Yao J, Xu C, Zhang J, Wang GS, Yi SH, Li H, Yang Y, Chen GH. [Liver transplantation for polycystic liver disease: 11 cases report and literature review]. Zhonghua Yi Xue Za Zhi 2019; 99:767-770. [PMID: 30884632 DOI: 10.3760/cma.j.issn.0376-2491.2019.10.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Objective: To explore the indications and safety of orthopedic liver transplantation for polycystic liver disease (PLD). Methods: Data of 11 patients with PLD who underwent orthotopic liver transplantation between 2004 and 2013 was retrospectively analyzed. Demographic, clinical and follow-up data were collected for statistical analysis. The survival rate was calculated by Kaplan-Meier method. Results: Over a period of 10 years, the patients received modified piggyback orthopedic liver transplantation (n=9) or combined liver-kidney transplantation (n=2) for PLD. The recipients' median age was 56 years. Seven patients were classified as Gigot type Ⅱ PLD, and four were classified as Gigot type Ⅲ PLD. Eight patients had severe decreased mobility (Eastern Cooperative Oncology Group, ECOG≥3). Only three cases were Child-Pguh Class C patients and the model for end-stage liver disease (MELD) score was>20. The mean hospitalization duration was (45.4±15.3) days, and the mean length of stay in intensive care unit was (4.1±1.9) days. The perioperative mortality was 18.2% and morbidity of complications was 63.6%. The median follow-up period was 111 months. Two patients died of severe complications after combined liver-kidney transplantation. One patient died of ischemia cholangitis during follow-up. The actuarial 1-, 5-and 10-year survival rate during the follow-up period was 82.2%, 81.8%, and 65.5%, respectively. Conclusions: Liver transplantation is the only curative and safe procedure for PLD, and it provides a good long-term prognosis and high quality of life for PLD patients. Liver transplantation could be a primary option in treating progressive or advanced PLD.
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Affiliation(s)
- H Tang
- Liver Transplantation Center, the Third Affiliated Hospital of Sun Yat-sen University, Guangzhou 510630, China
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Chen GH, Huang HW, Wang Y, Liu HW, Xu LJ, Ma X, Xue SL, He XF, Wang Y, Gu B, Li CX, Qiu HY, Tang XW, Jin ZM, Miao M, Sun AN, Wu DP. [An experimental study of CD4 targeted chimeric antigen receptor modified T cell with anti-lymphoma activity]. Zhonghua Xue Ye Xue Za Zhi 2019; 39:148-152. [PMID: 29562451 PMCID: PMC7342564 DOI: 10.3760/cma.j.issn.0253-2727.2018.02.014] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
目的 探讨针对CD4膜蛋白的CAR-T细胞对CD4+T细胞淋巴瘤细胞的靶向特异性杀伤作用。 方法 采用重组DNA技术构建含4-1BB共刺激分子的第二代针对CD4的CAR慢病毒载体,应用293T细胞包装慢病毒,采用流式细胞术检测T细胞的转染效率及T细胞亚群动态变化,采用流式细胞术微球法检测培养上清中IFN-γ浓度。 结果 ①构建的慢病毒载体转染激活的T细胞后CAR膜蛋白阳性率达到50.0%~70.0%。T细胞激活后部分CD8+T细胞弱表达(dim)CD4膜蛋白。T细胞转染针对CD4的CAR慢病毒后CD4+ T细胞、CD8+ CD4dim T细胞逐渐被清除。②CAR-T细胞、对照组T细胞(空载体转染的T细胞)以8∶1效靶比分别与CD4+人T细胞淋巴瘤细胞株KARPAS 299细胞共培养24 h,杀伤效率分别为(96.9±2.1)%和(11.2±3.1)%,前者明显高于后者(t=7.137,P=0.028)。③CAR-T细胞单独培养,与转染慢病毒载体表达人CD4的K562细胞(K562-CD4细胞)、K562细胞共培养后上清中IFN-γ浓度分别为(1 785±268)、(15 648±2 168)、(1 978±354)pg/ml,CAR-T细胞与K562-CD4细胞共培养上清IFN-γ浓度明显高于其他两组,差异有统计学意义(P<0.01)。 结论 CD4特异性CAR-T细胞效应细胞免疫表型为CD8+ CD4+ T细胞,在体外具有杀伤正常CD4+ T细胞和CD4+ T细胞淋巴瘤细胞的活性,对于CD4dim T细胞也有较好的清除活性。
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Affiliation(s)
- G H Chen
- The First Affiliated Hospital of Soochow University, Jiangsu Institute of Hematology, Collaborative Innovation Center of Hematology, Suzhou Institute of Blood and Marrow Transplantation, Suzhou 215006, China
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Chen GH, Tzekov R, Jiang FZ, Mao SH, Tong YH, Li WS. Iatrogenic retinal breaks and postoperative retinal detachments in microincision vitrectomy surgery compared with conventional 20-gauge vitrectomy: a meta-analysis. Eye (Lond) 2018; 33:785-795. [PMID: 30560911 DOI: 10.1038/s41433-018-0319-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2018] [Revised: 11/04/2018] [Accepted: 11/17/2018] [Indexed: 12/19/2022] Open
Abstract
PURPOSE To assess the incidence of iatrogenic retinal breaks (IRBs) and postoperative retinal detachments (RDs) in microincision vitrectomy surgery (MIVS) compared with 20-gauge (20 G) vitrectomy. METHODS A comprehensive literature search was performed to find relevant studies and a meta-analysis of the IRBs and postoperative RDs rates after 20 G vitrectomy versus MIVS was conducted. RESULTS Thirty-two studies were selected, including 14,373 eyes (6932 eyes in the 20 G group, 7441 eyes in the MIVS group). The meta-analysis demonstrated that the incidence of IRBs was significantly higher in 20 G vitrectomy vs. MIVS (OR = 2.22, 95% CI, 1.93-2.57, P < 0.00001) and in a subanalysis vs. 23 G MIVS (OR = 2.19, 95% CI, 1.87-2.56, P < 0.00001) and vs. 25 G MIVS (OR = 2.27, 95% CI, 1.62-3.18, P < 0.00001). Similar result was obtained in a subanalysis for macular surgery (OR = 2.44, 95% CI, 1.99-2.99, P < 0.00001), and also for sclerotomy-related IRBs (OR = 3.73, 95% CI, 2.55-5.44, P < 0.00001), but not for surgically induced posterior vitreous detachment-related IRBs (OR = 1.59, 95% CI, 0.89-2.84, P = 0.12). The incidence of postoperative RDs in 20 G vitrectomy was significantly higher compared to MIVS (OR = 1.72, 95% CI, 1.21-2.46, P = 0.003) and in a subanalysis vs. 23 G MIVS (OR = 2.45, 95% CI, 1.50-4.00, P = 0.0003), but not for 25 G MIVS (OR = 1.01, 95% CI, 0.63-1.64, P = 0.96). Similar result was obtained in a subanalysis for macular surgery (OR = 1.89, 95% CI, 1.26-2.85, P = 0.002). CONCLUSION This meta-analysis demonstrated that MIVS is associated with a lower risk of IRBs and postoperative RDs compared to 20 G vitrectomy.
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Affiliation(s)
- G H Chen
- Department of Ophthalmology, Quzhou People's Hospital, Quzhou, Zhejiang, People's Republic of China
| | - R Tzekov
- Department of Ophthalmology, University of South Florida, Tampa, FL, USA
| | - F Z Jiang
- Department of Ophthalmology, Quzhou People's Hospital, Quzhou, Zhejiang, People's Republic of China
| | - S H Mao
- Department of Ophthalmology, Quzhou People's Hospital, Quzhou, Zhejiang, People's Republic of China
| | - Y H Tong
- Department of Ophthalmology, Quzhou People's Hospital, Quzhou, Zhejiang, People's Republic of China
| | - W S Li
- Shanghai Aier Eye Hospital, 1286 Hongqiao Road, Shanghai, People's Republic of China. .,Aier School of Ophthalmology, Central South University, Changsha, Hunan Province, People's Republic of China.
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Cheng Z, Chen GH, Dai MM, Luo W, Lyu P, Cao XB. [New psychoactive substances abuse among patients with access to methadone maintenance treatment in Jiangsu province: a case-control study]. Zhonghua Liu Xing Bing Xue Za Zhi 2018; 39:625-630. [PMID: 29860806 DOI: 10.3760/cma.j.issn.0254-6450.2018.05.016] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Objective: To explore the reasons and factors associated with new psychoactive substances abuse among patients with access to methadone maintenance treatment (MMT). Methods: A well-developed questionnaire and urine tests were used to collect information about demographic characteristics, condition of MMT and drug abuse, family and social support of MMT clients. A 1∶1 matched case-control study was conducted, and conditional logistic regression model was used to identify factors associated with new psychoactive substances abuse. Results: A total of 212 (106 pairs) clients receiving MMT were recruited, and most of them were males (78.3%, 166/212), married or cohabitant (48.6%, 103/212) and unemployed (63.2%, 134/212). The average age of the clients was (45.1±7.2) years. The main types of abused new psychoactive substances were benzodiazepine (62.3%, 66/106) and methamphetamine (39.6%, 42/106). The proportion of abusing multi new psychoactive substances was 8.5% (9/106). Results from multivariate conditional logistic regression analysis indicated that using opioid drug during the past 6 months of MMT treatment might increase the risk of abusing new psychoactive substances (OR=3.25, 95%CI: 1.35-7.79), benzodiazepine (OR=3.25, 95%CI: 1.11- 9.47) and methamphetamine (OR=13.31, 95%CI: 1.12-158.01). Moreover, MMT for more than9 years reduced the risk of abuse of new psychoactive substances (OR=0.03, 95%CI: 0.01-0.21), benzodiazepine (OR=0.02, 95%CI: 0.00-0.36) and methamphetamine (OR=0.02, 95%CI: 0.00-0.69). Conclusion: Less new psychoactive substances abuse might be associated with longer duration of MMT treatment. And inappropriate support from family and friends might increase the risk of abusing new psychoactive substances in MMT clients, especially in clients who used opioid.
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Affiliation(s)
- Z Cheng
- National Center for AIDS/STD Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China
| | - G H Chen
- Department of AIDS/STD Prevention and Control, Jiangsu Provincial Center for Diseases Control and Prevention, Nanjing 210009, China
| | - M M Dai
- National Center for AIDS/STD Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China
| | - W Luo
- National Center for AIDS/STD Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China
| | - P Lyu
- National Center for AIDS/STD Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China
| | - X B Cao
- National Center for AIDS/STD Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China
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Tang X, Zhang M, Zhou N, Yan J, Yang LX, Chen GH. [Current status of cognitive dysfunction in patients with obstructive sleep apnea hypopnea syndrome]. Lin Chung Er Bi Yan Hou Tou Jing Wai Ke Za Zhi 2018; 31:813-816. [PMID: 29771054 DOI: 10.13201/j.issn.1001-1781.2017.10.022] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 02/24/2017] [Indexed: 11/12/2022]
Abstract
With the deepening of research, the cognitive disorders caused by obstructive sleep apnea hypopnea syndrome has attracted more and more attention by scholars both at home and abroad. This paper systematically reviews the progress of its clinical manifestations and pathogenesis.
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Chen GH, Tang RJ, Huang CR, Xu JY, Yang YJ. P3440Activation of PPAR gamma/eNOS pathway in cardiac microvascular endothelial cells by plasma exosomes alleviates myocardial ischemia/reperfusion injury. Eur Heart J 2018. [DOI: 10.1093/eurheartj/ehy563.p3440] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Affiliation(s)
- G H Chen
- Fuwai Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, cardiology, Beijing, China People's Republic of
| | - R J Tang
- Fuwai Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, cardiology, Beijing, China People's Republic of
| | - C R Huang
- Fuwai Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, cardiology, Beijing, China People's Republic of
| | - J Y Xu
- Fuwai Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, cardiology, Beijing, China People's Republic of
| | - Y J Yang
- Fuwai Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, cardiology, Beijing, China People's Republic of
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Yang G, Wu J, Chen S, Zhou W, Sun J, Chen G. Size-independent neural networks based first-principles method for accurate prediction of heat of formation of fuels. J Chem Phys 2018; 148:241738. [DOI: 10.1063/1.5024442] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- GuanYa Yang
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Jiang Wu
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - ShuGuang Chen
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - WeiJun Zhou
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - Jian Sun
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, China
| | - GuanHua Chen
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, China
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Abstract
To explore the designing principles for the quantum interference effect transistors, a series of simulations are carried out on a 2,5-linked perylene molecular junction composed of two subsystems connected via destructive quantum interference. Simulation results suggest that the overall conductance of a large π-conjugated system is determined by its subsystem connected directly to the electrodes. A Büttiker probe can be treated as a resistor, and to first-order approximation, its effect is found equivalent to severing its surrounding bonds. These findings greatly simplify the design of molecular quantum interference effect transistors.
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Affiliation(s)
- Shuguang Chen
- Department of Chemistry , The University of Hong Kong , Pokfulam Road , Pok Fu Lam , Hong Kong
| | - GuanHua Chen
- Department of Chemistry , The University of Hong Kong , Pokfulam Road , Pok Fu Lam , Hong Kong
| | - Mark A Ratner
- Department of Chemistry , Northwestern University , Evanston Illinois 60208 , United States
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Han JC, Chen GH, Zhang JL, Wang JG, Qu HX, Yan YF, Yang XJ, Cheng YH. Relative biological value of 1α-hydroxycholecalciferol to 25-hydroxycholecalciferol in broiler chicken diets. Poult Sci 2018; 96:2330-2335. [PMID: 28339866 DOI: 10.3382/ps/pex031] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2016] [Accepted: 01/20/2017] [Indexed: 11/20/2022] Open
Abstract
This study was conducted to evaluate the relative biological value (RBV) of 1α-hydroxycholecalciferol (1α-OH-D3) to 25-hydroxycholecalciferol (25-OH-D3) in one- to 21-day-old broiler chickens fed calcium (Ca)- and phosphorus (P)-deficient diets. On the d of hatch, 450 male Ross 308 broiler chickens were weighed and randomly allotted to 9 treatments with 5 replicates of 10 birds per replicate. The basal diet contained 0.50% Ca and 0.25% non-phytate phosphorus (NPP) but was not supplemented with cholecalciferol (vitamin D3). The levels of Ca and NPP in basal diets were lower than those recommended by NRC (1994). 25-OH-D3 was fed at zero, 1.25, 2.5, 5.0, and 10.0 μg/kg, and 1α-OH-D3 was fed at 0.625, 1.25, 2.5, and 5.0 μg/kg. The RBV of 1α-OH-D3 to 25-OH-D3 based on vitamin D intake was determined by the slope ratio method. Results showed that 25-OH-D3 or 1α-OH-D3 improved the growth performance and decreased the mortality in one- to 21-day-old broilers. A linear relationship was observed between the level of 25-OH-D3 or 1α-OH-D3 and mineralization of the femur, tibia, or metatarsus. The RBV of 1α-OH-D3 to 25-OH-D3 were 234, 253, and 202% when the weight, ash weight, and Ca percentage of femur were used as criteria. The corresponding RBV of 1α-OH-D3 to 25-OH-D3 were 232 to 263% and 245 to 267%, respectively, when tibia and metatarsus mineralization were used as criteria. These data indicate that when directly feeding a hormonally active form of vitamin D as 1α-OH-D3 proportionally less is needed than when using the precursor (25-OH-D3) in diets deficient in Ca and P.
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Affiliation(s)
- J C Han
- Department of Animal Science, College of Life Science, Shangqiu Normal University, Shangqiu, China
| | - G H Chen
- Department of Animal Science, College of Life Science, Shangqiu Normal University, Shangqiu, China.,College of Animal Husbandry and Veterinary Science, Henan Agricultural University, Zhengzhou, China
| | - J L Zhang
- Department of Animal Science, College of Life Science, Shangqiu Normal University, Shangqiu, China.,College of Animal Husbandry and Veterinary Science, Henan Agricultural University, Zhengzhou, China
| | - J G Wang
- Department of Animal Science, College of Life Science, Shangqiu Normal University, Shangqiu, China.,College of Animal Husbandry and Veterinary Science, Henan Agricultural University, Zhengzhou, China
| | - H X Qu
- Department of Animal Science, College of Life Science, Shangqiu Normal University, Shangqiu, China
| | - Y F Yan
- Department of Animal Science, College of Life Science, Shangqiu Normal University, Shangqiu, China
| | - X J Yang
- College of Animal Science and Technology, Northwest A&F University, Yangling, China
| | - Y H Cheng
- Department of Biotechnology and Animal Science, National Ilan University, Taiwan
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Han JC, Wang JG, Chen GH, Zhang JL, Zhang N, Qu HX, Guo Y, Yan YF, Yang XJ. 1α-Hydroxycholecalciferol improves the growth performance and up-regulates the mRNA expression of vitamin D receptor in the small intestine and kidney of broiler chickens. Poult Sci 2018; 97:1263-1270. [PMID: 29452375 DOI: 10.3382/ps/pex423] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2016] [Accepted: 12/02/2017] [Indexed: 11/20/2022] Open
Abstract
1α-Hydroxycholecalciferol (1α-OH-D3) is a vitamin D derivative. The objective of this study was to evaluate the effects of 1α-OH-D3 on the growth and the mRNA expression of vitamin D receptor (VDR) in the small intestine and kidney of chickens. A total of 240 males of one-day-old Ross 308 broilers was randomly assigned to 4 treatments with 5 replicates of 12 birds per replicate. Three levels of 1α-OH-D3 (1.25, 2.5, and 5 μg/kg) were added to a basal diet containing 0.50% calcium (Ca), 0.25% non-phytate phosphorus (NPP), and without supplemental cholecalciferol (vitamin D3). The control diet contained 1.00% Ca, 0.45% NPP, and 25 μg/kg cholecalciferol. Dietary 1α-OH-D3 levels linearly improved the average daily feed intake (ADFI), average daily gain (ADG), femur and tibia mineralization, and plasma Ca concentration, and retained Ca and total phosphorus (tP) amounts in broilers from 1 to 21 d of age (P < 0.05). In addition, 1α-OH-D3 also linearly up-regulated the mRNA expression levels of VDR in the duodenum as well as those of VDR and sodium-phosphate cotransporter NaPi-IIa and NaPi-IIc in the kidney of broilers (P < 0.05). However, 1α-OH-D3 did not affect the mRNA levels of 25-hydroxylase in the liver or NaPi-IIb in the duodenum (P > 0.05). No differences were observed in the ADFI, ADG, bone length, plasma mineral concentration, retained tP amount, or the mRNA levels of the above genes (except for VDR in the kidney) between the birds fed the diet with 5 μg/kg 1α-OH-D3 and the birds fed the control diet (P > 0.05). By contrast, the weight, ash weight, ash percentage, and Ca percentage of the bone, retained Ca amount, and the mRNA level of VDR in the kidney were lower in the birds fed the diet with 5 μg/kg 1α-OH-D3 than in the birds fed the control diet (P < 0.05). These data indicate that 1α-OH-D3 up-regulates the gene expression of VDR in the small intestine and kidney at the transcriptional level, thereby improving the growth performance and bone mineralization of broiler chickens from 1 to 21 d of age.
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Affiliation(s)
- J C Han
- Department of Animal Science, College of Life Science, Shangqiu Normal University, Shangqiu 476000, Henan, China
| | - J G Wang
- Department of Animal Science, College of Life Science, Shangqiu Normal University, Shangqiu 476000, Henan, China.,College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou 450002, Henan, China
| | - G H Chen
- Department of Animal Science, College of Life Science, Shangqiu Normal University, Shangqiu 476000, Henan, China.,College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou 450002, Henan, China
| | - J L Zhang
- Department of Animal Science, College of Life Science, Shangqiu Normal University, Shangqiu 476000, Henan, China.,College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou 450002, Henan, China
| | - N Zhang
- Department of Animal Science, College of Life Science, Shangqiu Normal University, Shangqiu 476000, Henan, China.,College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou 450002, Henan, China
| | - H X Qu
- Department of Animal Science, College of Life Science, Shangqiu Normal University, Shangqiu 476000, Henan, China
| | - Y Guo
- Department of Animal Science, College of Life Science, Shangqiu Normal University, Shangqiu 476000, Henan, China
| | - Y F Yan
- Department of Animal Science, College of Life Science, Shangqiu Normal University, Shangqiu 476000, Henan, China
| | - X J Yang
- College of Animal Science and Technology, Northwest A&F University, Yangling 712100, Shaanxi, China
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