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Letner JG, Patel PR, Hsieh JC, Smith Flores IM, della Valle E, Walker LA, Weiland JD, Chestek CA, Cai D. Post-explant profiling of subcellular-scale carbon fiber intracortical electrodes and surrounding neurons enables modeling of recorded electrophysiology. J Neural Eng 2023; 20:026019. [PMID: 36848679 PMCID: PMC10022369 DOI: 10.1088/1741-2552/acbf78] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Revised: 01/12/2023] [Accepted: 02/27/2023] [Indexed: 03/01/2023]
Abstract
Objective.Characterizing the relationship between neuron spiking and the signals that electrodes record is vital to defining the neural circuits driving brain function and informing clinical brain-machine interface design. However, high electrode biocompatibility and precisely localizing neurons around the electrodes are critical to defining this relationship.Approach.Here, we demonstrate consistent localization of the recording site tips of subcellular-scale (6.8µm diameter) carbon fiber electrodes and the positions of surrounding neurons. We implanted male rats with carbon fiber electrode arrays for 6 or 12+ weeks targeting layer V motor cortex. After explanting the arrays, we immunostained the implant site and localized putative recording site tips with subcellular-cellular resolution. We then 3D segmented neuron somata within a 50µm radius from implanted tips to measure neuron positions and health and compare to healthy cortex with symmetric stereotaxic coordinates.Main results.Immunostaining of astrocyte, microglia, and neuron markers confirmed that overall tissue health was indicative of high biocompatibility near the tips. While neurons near implanted carbon fibers were stretched, their number and distribution were similar to hypothetical fibers placed in healthy contralateral brain. Such similar neuron distributions suggest that these minimally invasive electrodes demonstrate the potential to sample naturalistic neural populations. This motivated the prediction of spikes produced by nearby neurons using a simple point source model fit using recorded electrophysiology and the mean positions of the nearest neurons observed in histology. Comparing spike amplitudes suggests that the radius at which single units can be distinguished from others is near the fourth closest neuron (30.7 ± 4.6µm,X-± S) in layer V motor cortex.Significance.Collectively, these data and simulations provide the first direct evidence that neuron placement in the immediate vicinity of the recording site influences how many spike clusters can be reliably identified by spike sorting.
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Affiliation(s)
- Joseph G Letner
- Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI 48109, United States of America
- Biointerfaces Institute, University of Michigan, Ann Arbor, MI 48109, United States of America
| | - Paras R Patel
- Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI 48109, United States of America
- Biointerfaces Institute, University of Michigan, Ann Arbor, MI 48109, United States of America
| | - Jung-Chien Hsieh
- Neuroscience Graduate Program, University of Michigan, Ann Arbor, MI 48109, United States of America
| | - Israel M Smith Flores
- Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI 48109, United States of America
- Department of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, MI 48109, United States of America
| | - Elena della Valle
- Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI 48109, United States of America
- Biointerfaces Institute, University of Michigan, Ann Arbor, MI 48109, United States of America
| | - Logan A Walker
- Biophysics Program, University of Michigan, Ann Arbor, MI 48109, United States of America
- Department of Computational Medicine and Bioinformatics, Michigan Medicine, Ann Arbor, MI 48109, United States of America
| | - James D Weiland
- Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI 48109, United States of America
- Biointerfaces Institute, University of Michigan, Ann Arbor, MI 48109, United States of America
- Department of Ophthalmology and Visual Sciences, Kellogg Eye Center, University of Michigan, Ann Arbor, MI 48105, United States of America
| | - Cynthia A Chestek
- Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI 48109, United States of America
- Biointerfaces Institute, University of Michigan, Ann Arbor, MI 48109, United States of America
- Neuroscience Graduate Program, University of Michigan, Ann Arbor, MI 48109, United States of America
- Department of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, MI 48109, United States of America
- Robotics Department, University of Michigan, Ann Arbor, MI 48109, United States of America
| | - Dawen Cai
- Neuroscience Graduate Program, University of Michigan, Ann Arbor, MI 48109, United States of America
- Biophysics Program, University of Michigan, Ann Arbor, MI 48109, United States of America
- Department of Cell and Developmental Biology, University of Michigan Medical School, Ann Arbor, MI 48109, United States of America
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