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Antoniou A, Manousaki T, Ramírez F, Cariani A, Cannas R, Kasapidis P, Magoulas A, Albo-Puigserver M, Lloret-Lloret E, Bellido JM, Pennino MG, Follesa MC, Esteban A, Saraux C, Sbrana M, Spedicato MT, Coll M, Tsigenopoulos CS. Sardines at a junction: Seascape genomics reveals ecological and oceanographic drivers of variation in the NW Mediterranean Sea. Mol Ecol 2023; 32:1608-1628. [PMID: 36596297 DOI: 10.1111/mec.16840] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2021] [Revised: 12/20/2022] [Accepted: 12/30/2022] [Indexed: 01/04/2023]
Abstract
By evaluating genetic variation across the entire genome, one can address existing questions in a novel way while raising new ones. The latter includes how different local environments influence adaptive and neutral genomic variation within and among populations, providing insights into local adaptation of natural populations and their responses to global change. Here, under a seascape genomic approach, ddRAD data of 4609 single nucleotide polymorphisms (SNPs) from 398 sardines (Sardina pilchardus) collected in 11 Mediterranean and one Atlantic site were generated. These were used along with oceanographic and ecological information to detect signals of adaptive divergence with gene flow across environmental gradients. The studied sardines constitute two clusters (FST = 0.07), a pattern attributed to outlier loci, highlighting putative local adaptation. The trend in the number of days with sea surface temperature above 19°C, a critical threshold for successful sardine spawning, was crucial at all levels of population structuring with implications on the species' key biological processes. Outliers link candidate SNPs to the region's environmental heterogeneity. Our findings provide evidence for a dynamic equilibrium in which population structure is maintained by physical and ecological factors under the opposing influences of migration and selection. This dynamic in a natural system warrants continuous monitoring under a seascape genomic approach that might benefit from a temporal and more detailed spatial dimension. Our results may contribute to complementary studies aimed at providing deeper insights into the mechanistic processes underlying population structuring. Those are key to understanding and predicting future changes and responses of this highly exploited species in the face of climate change.
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Affiliation(s)
- Aglaia Antoniou
- Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Crete, Greece
| | - Tereza Manousaki
- Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Crete, Greece
| | - Francisco Ramírez
- Institute of Marine Science (ICM-CSIC), Passeig Marítim de la Barceloneta, Barcelona, Spain
| | - Alessia Cariani
- Dept. Biological, Geological & Environmental Sciences (BiGeA), Alma Mater Studiorum - Università di Bologna, Ravenna, Italy.,Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa), Rome, Italy
| | - Rita Cannas
- Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa), Rome, Italy.,Department of Life and Environmental Sciences, University of Cagliari, Cagliari, Italy
| | - Panagiotis Kasapidis
- Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Crete, Greece
| | - Antonios Magoulas
- Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Crete, Greece
| | - Marta Albo-Puigserver
- Institute of Marine Science (ICM-CSIC), Passeig Marítim de la Barceloneta, Barcelona, Spain.,Centro Oceanográfico de Baleares, Instituto Español de Oceanografía (COB-CNIEO/CSIC), Palma, Spain
| | - Elena Lloret-Lloret
- Institute of Marine Science (ICM-CSIC), Passeig Marítim de la Barceloneta, Barcelona, Spain
| | - Jose Maria Bellido
- Centro Oceanográfico de Murcia, Instituto Español de Oceanografía, (COMU-CNIEO/CSIC), Murcia, Spain
| | - Maria Grazia Pennino
- Centro Oceanográfico de Vigo, Instituto Español de Oceanografía (COVI-CNIEO/CSIC), Vigo, Pontevedra, Spain
| | - Maria Cristina Follesa
- Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa), Rome, Italy.,Department of Life and Environmental Sciences, University of Cagliari, Cagliari, Italy
| | - Antonio Esteban
- Centro Oceanográfico de Murcia, Instituto Español de Oceanografía, (COMU-CNIEO/CSIC), Murcia, Spain
| | - Claire Saraux
- MARBEC, University of Montpellier, CNRS, IFREMER, IRD, Sète, France
| | - Mario Sbrana
- Consorzio per il Centro Interuniversitario di Biologia Marina ed Ecologia Applicata G, Livorno, Italy
| | | | - Marta Coll
- Institute of Marine Science (ICM-CSIC), Passeig Marítim de la Barceloneta, Barcelona, Spain
| | - Costas S Tsigenopoulos
- Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Crete, Greece
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