1
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Villars A, Letort G, Valon L, Levayer R. DeXtrusion: Automatic recognition of epithelial cell extrusion through machine learning in vivo. Development 2023:316593. [PMID: 37283069 DOI: 10.1242/dev.201747] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2023] [Accepted: 05/28/2023] [Indexed: 06/08/2023]
Abstract
Accurately counting and localising cellular events from movies is an important bottleneck of high content tissue/embryo live imaging. Here, we propose a new methodology based on deep learning allowing automatic detection of cellular events and their precise x-y-t localisation on live fluorescent imaging movies without segmentation. We focused on the detection of cell extrusion, the expulsion of dying cells from the epithelial layer, and devised DeXtrusion: a pipeline based on recurrent neural networks for automatic detection of cell extrusion/cell death events in large movies of epithelia marked with cell contour. The pipeline, initially trained on movies of the Drosophila pupal notum marked with fluorescent E-cadherin, is easily trainable, provides fast and accurate extrusion predictions in a large range of imaging conditions, and can also detect other cellular events such as cell division or cell differentiation. It also performs well on other epithelial tissues with reasonable retraining. Our methodology could easily be applied for other cellular events detected in live fluorescent microscopy and help to democratise the use of deep learning for automatic event detections in developing tissues.
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Affiliation(s)
- Alexis Villars
- Department of Developmental and Stem Cell Biology, Institut Pasteur, Université de Paris Cité, CNRS UMR 3738, 25 rue du Dr. Roux, 75015 Paris, France
| | - Gaëlle Letort
- Department of Developmental and Stem Cell Biology, Institut Pasteur, Université de Paris Cité, CNRS UMR 3738, 25 rue du Dr. Roux, 75015 Paris, France
| | - Léo Valon
- Department of Developmental and Stem Cell Biology, Institut Pasteur, Université de Paris Cité, CNRS UMR 3738, 25 rue du Dr. Roux, 75015 Paris, France
| | - Romain Levayer
- Department of Developmental and Stem Cell Biology, Institut Pasteur, Université de Paris Cité, CNRS UMR 3738, 25 rue du Dr. Roux, 75015 Paris, France
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2
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Gonen N, Eozenou C, Mitter R, Elzaiat M, Stévant I, Aviram R, Bernardo AS, Chervova A, Wankanit S, Frachon E, Commère PH, Brailly-Tabard S, Valon L, Barrio Cano L, Levayer R, Mazen I, Gobaa S, Smith JC, McElreavey K, Lovell-Badge R, Bashamboo A. In vitro cellular reprogramming to model gonad development and its disorders. Sci Adv 2023; 9:eabn9793. [PMID: 36598988 PMCID: PMC9812383 DOI: 10.1126/sciadv.abn9793] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2022] [Accepted: 12/02/2022] [Indexed: 05/28/2023]
Abstract
During embryonic development, mutually antagonistic signaling cascades determine gonadal fate toward a testicular or ovarian identity. Errors in this process result in disorders of sex development (DSDs), characterized by discordance between chromosomal, gonadal, and anatomical sex. The absence of an appropriate, accessible in vitro system is a major obstacle in understanding mechanisms of sex-determination/DSDs. Here, we describe protocols for differentiation of mouse and human pluripotent cells toward gonadal progenitors. Transcriptomic analysis reveals that the in vitro-derived murine gonadal cells are equivalent to embryonic day 11.5 in vivo progenitors. Using similar conditions, Sertoli-like cells derived from 46,XY human induced pluripotent stem cells (hiPSCs) exhibit sustained expression of testis-specific genes, secrete anti-Müllerian hormone, migrate, and form tubular structures. Cells derived from 46,XY DSD female hiPSCs, carrying an NR5A1 variant, show aberrant gene expression and absence of tubule formation. CRISPR-Cas9-mediated variant correction rescued the phenotype. This is a robust tool to understand mechanisms of sex determination and model DSDs.
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Affiliation(s)
- Nitzan Gonen
- The Mina and Everard Goodman Faculty of Life Sciences and the Institute of Nanotechnology and Advanced Materials, Bar-Ilan University, Ramat Gan 5290002, Israel
- The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK
| | - Caroline Eozenou
- Institut Pasteur, Université de Paris, CNRS UMR3738, Human Developmental Genetics, F-75015 Paris, France
| | - Richard Mitter
- Bioinformatics Core, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK
| | - Maëva Elzaiat
- Institut Pasteur, Université de Paris, CNRS UMR3738, Human Developmental Genetics, F-75015 Paris, France
| | - Isabelle Stévant
- The Mina and Everard Goodman Faculty of Life Sciences and the Institute of Nanotechnology and Advanced Materials, Bar-Ilan University, Ramat Gan 5290002, Israel
| | - Rona Aviram
- The Mina and Everard Goodman Faculty of Life Sciences and the Institute of Nanotechnology and Advanced Materials, Bar-Ilan University, Ramat Gan 5290002, Israel
| | - Andreia Sofia Bernardo
- The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK
- National Heart and Lung Institute, Imperial College London, London, UK
| | - Almira Chervova
- Department of Stem Cell and Developmental Biology, Institut Pasteur, Paris 75724, France
| | - Somboon Wankanit
- Institut Pasteur, Université de Paris, CNRS UMR3738, Human Developmental Genetics, F-75015 Paris, France
| | - Emmanuel Frachon
- Biomaterials and Microfluidics Core Facility, Institut Pasteur, F-75015 Paris, France
| | - Pierre-Henri Commère
- Cytometry and Biomarkers, Centre de Ressources et Recherches Technologiques (C2RT), Institut Pasteur, F-75015 Paris, France
| | - Sylvie Brailly-Tabard
- Assistance Publique-Hôpitaux de Paris, Bicêtre Hospital, Molecular Genetics, Pharmacogenetics, and Hormonology, Le Kremlin-Bicêtre, France
| | - Léo Valon
- Institut Pasteur, Université de Paris, CNRS UMR3738, Cell Death and Epithelial Homeostasis, F-75015 Paris, France
| | - Laura Barrio Cano
- Cytometry and Biomarkers, Centre de Ressources et Recherches Technologiques (C2RT), Institut Pasteur, F-75015 Paris, France
| | - Romain Levayer
- Institut Pasteur, Université de Paris, CNRS UMR3738, Cell Death and Epithelial Homeostasis, F-75015 Paris, France
| | - Inas Mazen
- Genetics Department, National Research Center, Cairo, Egypt
| | - Samy Gobaa
- Biomaterials and Microfluidics Core Facility, Institut Pasteur, F-75015 Paris, France
| | - James C. Smith
- The Francis Crick Institute, 1 Midland Road, London NW1 1AT, UK
| | - Kenneth McElreavey
- Institut Pasteur, Université de Paris, CNRS UMR3738, Human Developmental Genetics, F-75015 Paris, France
| | | | - Anu Bashamboo
- Institut Pasteur, Université de Paris, CNRS UMR3738, Human Developmental Genetics, F-75015 Paris, France
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3
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Kelkar M, Bohec P, Smith MB, Sreenivasan V, Lisica A, Valon L, Ferber E, Baum B, Salbreux G, Charras G. Spindle reorientation in response to mechanical stress is an emergent property of the spindle positioning mechanisms. Proc Natl Acad Sci U S A 2022; 119:e2121868119. [PMID: 35727980 PMCID: PMC9245638 DOI: 10.1073/pnas.2121868119] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2021] [Accepted: 04/28/2022] [Indexed: 11/18/2022] Open
Abstract
Proper orientation of the mitotic spindle plays a crucial role in embryos, during tissue development, and in adults, where it functions to dissipate mechanical stress to maintain tissue integrity and homeostasis. While mitotic spindles have been shown to reorient in response to external mechanical stresses, the subcellular cues that mediate spindle reorientation remain unclear. Here, we used a combination of optogenetics and computational modeling to investigate how mitotic spindles respond to inhomogeneous tension within the actomyosin cortex. Strikingly, we found that the optogenetic activation of RhoA only influences spindle orientation when it is induced at both poles of the cell. Under these conditions, the sudden local increase in cortical tension induced by RhoA activation reduces pulling forces exerted by cortical regulators on astral microtubules. This leads to a perturbation of the balance of torques exerted on the spindle, which causes it to rotate. Thus, spindle rotation in response to mechanical stress is an emergent phenomenon arising from the interaction between the spindle positioning machinery and the cell cortex.
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Affiliation(s)
- Manasi Kelkar
- London Centre for Nanotechnology, University College London, London WC1H 0AH, United Kingdom
| | - Pierre Bohec
- London Centre for Nanotechnology, University College London, London WC1H 0AH, United Kingdom
| | | | - Varun Sreenivasan
- Centre for Developmental Neurobiology, Institute of Psychiatry, Psychology and Neuroscience, King’s College London, London SE1 1UL, United Kingdom
- Medical Research Council Centre for Neurodevelopmental Disorders, King’s College London, London SE1 1UL, United Kingdom
| | - Ana Lisica
- London Centre for Nanotechnology, University College London, London WC1H 0AH, United Kingdom
| | - Léo Valon
- Department of Developmental and Stem Cell Biology, Institut Pasteur, CNRS UMR 3738, 75015 Paris , France
| | - Emma Ferber
- London Centre for Nanotechnology, University College London, London WC1H 0AH, United Kingdom
| | - Buzz Baum
- Medical Research Council Laboratory for Molecular Cell Biology, University College London, London WC1E 6BT, United Kingdom
- Division of Cell Biology, Medical Research Council Laboratory of Molecular Biology, Cambridge CB2 0QH, United Kingdom
- Institute for the Physics of Living Systems, University College London, London WC1E 6BT, United Kingdom
| | - Guillaume Salbreux
- The Francis Crick Institute, London NW1 1AT, United Kingdom
- Department of Genetics and Evolution, Quai Ernest-Ansermet 30, 1205 Geneva, Switzerland
| | - Guillaume Charras
- London Centre for Nanotechnology, University College London, London WC1H 0AH, United Kingdom
- Institute for the Physics of Living Systems, University College London, London WC1E 6BT, United Kingdom
- Department of Cell and Developmental Biology, University College London, London WC1E 6BT, United Kingdom
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4
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Herbert S, Valon L, Mancini L, Dray N, Caldarelli P, Gros J, Esposito E, Shorte SL, Bally-Cuif L, Aulner N, Levayer R, Tinevez JY. LocalZProjector and DeProj: a toolbox for local 2D projection and accurate morphometrics of large 3D microscopy images. BMC Biol 2021; 19:136. [PMID: 34215263 PMCID: PMC8254216 DOI: 10.1186/s12915-021-01037-w] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2021] [Accepted: 04/23/2021] [Indexed: 12/02/2022] Open
Abstract
Background Quantitative imaging of epithelial tissues requires bioimage analysis tools that are widely applicable and accurate. In the case of imaging 3D tissues, a common preprocessing step consists of projecting the acquired 3D volume on a 2D plane mapping the tissue surface. While segmenting the tissue cells is amenable on 2D projections, it is still very difficult and cumbersome in 3D. However, for many specimen and models used in developmental and cell biology, the complex content of the image volume surrounding the epithelium in a tissue often reduces the visibility of the biological object in the projection, compromising its subsequent analysis. In addition, the projection may distort the geometry of the tissue and can lead to strong artifacts in the morphology measurement. Results Here we introduce a user-friendly toolbox built to robustly project epithelia on their 2D surface from 3D volumes and to produce accurate morphology measurement corrected for the projection distortion, even for very curved tissues. Our toolbox is built upon two components. LocalZProjector is a configurable Fiji plugin that generates 2D projections and height-maps from potentially large 3D stacks (larger than 40 GB per time-point) by only incorporating signal of the planes with local highest variance/mean intensity, despite a possibly complex image content. DeProj is a MATLAB tool that generates correct morphology measurements by combining the height-map output (such as the one offered by LocalZProjector) and the results of a cell segmentation on the 2D projection, hence effectively deprojecting the 2D segmentation in 3D. In this paper, we demonstrate their effectiveness over a wide range of different biological samples. We then compare its performance and accuracy against similar existing tools. Conclusions We find that LocalZProjector performs well even in situations where the volume to project also contains unwanted signal in other layers. We show that it can process large images without a pre-processing step. We study the impact of geometrical distortions on morphological measurements induced by the projection. We measured very large distortions which are then corrected by DeProj, providing accurate outputs. Supplementary Information The online version contains supplementary material available at (10.1186/s12915-021-01037-w).
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Affiliation(s)
- Sébastien Herbert
- Image Analysis Hub, C2RT / DTPS, Institut Pasteur, Paris, France.,Present Address: Imaging Core Facility, Biozentrum, University of Basel, Basel, Switzerland
| | - Léo Valon
- Cell death and epithelial homeostasis unit, Developmental and Stem Cell Biology Department, UMR3738 CNRS, Institut Pasteur, Paris, France
| | - Laure Mancini
- Zebrafish Neurogenetics unit (Team supported by the Ligue Nationale Contre le Cancer), Developmental and Stem Cell Biology Department, UMR3738 CNRS, Institut Pasteur, Paris, France.,Collège doctoral, Sorbonne Université, Paris, France
| | - Nicolas Dray
- Zebrafish Neurogenetics unit (Team supported by the Ligue Nationale Contre le Cancer), Developmental and Stem Cell Biology Department, UMR3738 CNRS, Institut Pasteur, Paris, France
| | - Paolo Caldarelli
- Dynamic Regulation of Morphogenesis, Developmental and Stem Cell Biology Department, UMR3738 CNRS, Institut Pasteur, Paris, France
| | - Jérôme Gros
- Dynamic Regulation of Morphogenesis, Developmental and Stem Cell Biology Department, UMR3738 CNRS, Institut Pasteur, Paris, France
| | - Elric Esposito
- UTechS PBI, C2RT / DTPS, Institut Pasteur, Paris, France
| | | | - Laure Bally-Cuif
- Zebrafish Neurogenetics unit (Team supported by the Ligue Nationale Contre le Cancer), Developmental and Stem Cell Biology Department, UMR3738 CNRS, Institut Pasteur, Paris, France
| | | | - Romain Levayer
- Cell death and epithelial homeostasis unit, Developmental and Stem Cell Biology Department, UMR3738 CNRS, Institut Pasteur, Paris, France
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5
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Valon L, Davidović A, Levillayer F, Villars A, Chouly M, Cerqueira-Campos F, Levayer R. Robustness of epithelial sealing is an emerging property of local ERK feedback driven by cell elimination. Dev Cell 2021; 56:1700-1711.e8. [PMID: 34081909 PMCID: PMC8221813 DOI: 10.1016/j.devcel.2021.05.006] [Citation(s) in RCA: 49] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2020] [Revised: 02/05/2021] [Accepted: 05/07/2021] [Indexed: 12/31/2022]
Abstract
What regulates the spatiotemporal distribution of cell elimination in tissues remains largely unknown. This is particularly relevant for epithelia with high rates of cell elimination where simultaneous death of neighboring cells could impair epithelial sealing. Here, using the Drosophila pupal notum (a single-layer epithelium) and a new optogenetic tool to trigger caspase activation and cell extrusion, we first showed that death of clusters of at least three cells impaired epithelial sealing; yet, such clusters were almost never observed in vivo. Accordingly, statistical analysis and simulations of cell death distribution highlighted a transient and local protective phase occurring near every cell death. This protection is driven by a transient activation of ERK in cells neighboring extruding cells, which inhibits caspase activation and prevents elimination of cells in clusters. This suggests that the robustness of epithelia with high rates of cell elimination is an emerging property of local ERK feedback.
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Affiliation(s)
- Léo Valon
- Department of Developmental and Stem Cell Biology, Institut Pasteur, CNRS UMR 3738, 25 rue du Dr. Roux, 75015 Paris, France
| | - Anđela Davidović
- Department of Computational Biology, Institut Pasteur, CNRS USR 3756, 28 rue du Dr. Roux, 75015 Paris, France
| | - Florence Levillayer
- Department of Developmental and Stem Cell Biology, Institut Pasteur, CNRS UMR 3738, 25 rue du Dr. Roux, 75015 Paris, France
| | - Alexis Villars
- Department of Developmental and Stem Cell Biology, Institut Pasteur, CNRS UMR 3738, 25 rue du Dr. Roux, 75015 Paris, France; Sorbonne Université, Collège Doctoral, F75005 Paris, France
| | - Mathilde Chouly
- Department of Developmental and Stem Cell Biology, Institut Pasteur, CNRS UMR 3738, 25 rue du Dr. Roux, 75015 Paris, France
| | - Fabiana Cerqueira-Campos
- Department of Developmental and Stem Cell Biology, Institut Pasteur, CNRS UMR 3738, 25 rue du Dr. Roux, 75015 Paris, France
| | - Romain Levayer
- Department of Developmental and Stem Cell Biology, Institut Pasteur, CNRS UMR 3738, 25 rue du Dr. Roux, 75015 Paris, France.
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6
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Hennig K, Wang I, Moreau P, Valon L, DeBeco S, Coppey M, Miroshnikova YA, Albiges-Rizo C, Favard C, Voituriez R, Balland M. Stick-slip dynamics of cell adhesion triggers spontaneous symmetry breaking and directional migration of mesenchymal cells on one-dimensional lines. Sci Adv 2020; 6:eaau5670. [PMID: 31921998 PMCID: PMC6941913 DOI: 10.1126/sciadv.aau5670] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2018] [Accepted: 10/29/2019] [Indexed: 05/18/2023]
Abstract
Directional cell motility relies on the ability of single cells to establish a front-rear polarity and can occur in the absence of external cues. The initiation of migration has often been attributed to the spontaneous polarization of cytoskeleton components, while the spatiotemporal evolution of cell-substrate interaction forces has yet to be resolved. Here, we establish a one-dimensional microfabricated migration assay that mimics the complex in vivo fibrillar environment while being compatible with high-resolution force measurements, quantitative microscopy, and optogenetics. Quantification of morphometric and mechanical parameters of NIH-3T3 fibroblasts and RPE1 epithelial cells reveals a generic stick-slip behavior initiated by contractility-dependent stochastic detachment of adhesive contacts at one side of the cell, which is sufficient to trigger cell motility in 1D in the absence of pre-established polarity. A theoretical model validates the crucial role of adhesion dynamics, proposing that front-rear polarity can emerge independently of a complex self-polarizing system.
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Affiliation(s)
- K. Hennig
- Laboratoire Interdisciplinaire de Physique, Grenoble Alpes University, Saint Martin d’Heres, France
| | - I. Wang
- Laboratoire Interdisciplinaire de Physique, Grenoble Alpes University, Saint Martin d’Heres, France
| | - P. Moreau
- Laboratoire Interdisciplinaire de Physique, Grenoble Alpes University, Saint Martin d’Heres, France
| | - L. Valon
- Institut Pasteur, Department of Developmental and Stem Cell Biology, 25 rue du Dr. Roux, 75015 Paris, France
| | - S. DeBeco
- Laboratoire Physico-Chimie, Institut Curie, Centre National de la Recherche Scientifique UMR168, Paris, France
| | - M. Coppey
- Laboratoire Physico-Chimie, Institut Curie, Centre National de la Recherche Scientifique UMR168, Paris, France
| | - Y. A. Miroshnikova
- DYSAD, Institut for Advanced Biosciences, Centre de Recherche UGA/Inserm U 1209/CNRS UMR 5309, La Tronche, France
| | - C. Albiges-Rizo
- DYSAD, Institut for Advanced Biosciences, Centre de Recherche UGA/Inserm U 1209/CNRS UMR 5309, La Tronche, France
| | - C. Favard
- Membrane Domains and Viral Assembly, IRIM, UMR9004 CNRS/Université de Montpellier, 1919, route de Mende, 34293 Montpellier Cedex, France
| | - R. Voituriez
- Laboratoire Jean Perrin and Laboratoire de Physique Théorique de la Matière Condensée, Sorbonne Université, Tour 13-12, 5eme etage, 4 place Jussieu, 75252 Paris Cedex 05, France
- Corresponding author. (M.B.); (R.V.)
| | - M. Balland
- Laboratoire Interdisciplinaire de Physique, Grenoble Alpes University, Saint Martin d’Heres, France
- Corresponding author. (M.B.); (R.V.)
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7
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Valon L, Levayer R. Dying under pressure: cellular characterisation and in vivo functions of cell death induced by compaction. Biol Cell 2019; 111:51-66. [PMID: 30609052 DOI: 10.1111/boc.201800075] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Accepted: 12/05/2018] [Indexed: 12/16/2022]
Abstract
Cells and tissues are exposed to multiple mechanical stresses during development, tissue homoeostasis and diseases. While we start to have an extensive understanding of the influence of mechanics on cell differentiation and proliferation, how excessive mechanical stresses can also lead to cell death and may be associated with pathologies has been much less explored so far. Recently, the development of new perturbative approaches allowing modulation of pressure and deformation of tissues has demonstrated that compaction (the reduction of tissue size or volume) can lead to cell elimination. Here, we discuss the relevant type of stress and the parameters that could be causal to cell death from single cell to multicellular systems. We then compare the pathways and mechanisms that have been proposed to influence cell survival upon compaction. We eventually describe the relevance of compaction-induced death in vivo, and its functions in morphogenesis, tissue size regulation, tissue homoeostasis and cancer progression.
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Affiliation(s)
- Léo Valon
- Department of Developmental and Stem Cell Biology, Institut Pasteur, Paris, 75015, France
| | - Romain Levayer
- Department of Developmental and Stem Cell Biology, Institut Pasteur, Paris, 75015, France
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8
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Moreno E, Valon L, Levillayer F, Levayer R. Competition for Space Induces Cell Elimination through Compaction-Driven ERK Downregulation. Curr Biol 2018; 29:23-34.e8. [PMID: 30554899 PMCID: PMC6331351 DOI: 10.1016/j.cub.2018.11.007] [Citation(s) in RCA: 77] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2018] [Revised: 10/01/2018] [Accepted: 11/01/2018] [Indexed: 12/18/2022]
Abstract
The plasticity of developing tissues relies on the adjustment of cell survival and growth rate to environmental cues. This includes the effect of mechanical cues on cell survival. Accordingly, compaction of an epithelium can lead to cell extrusion and cell death. This process was proposed to contribute to tissue homeostasis but also to facilitate the expansion of pretumoral cells through the compaction and elimination of the neighboring healthy cells. However, we know very little about the pathways that can trigger apoptosis upon tissue deformation, and the contribution of compaction-driven death to clone expansion has never been assessed in vivo. Using the Drosophila pupal notum and a new live sensor of ERK, we show first that tissue compaction induces cell elimination through the downregulation of epidermal growth factor receptor/extracellular signal regulated kinase (EGFR/ERK) pathway and the upregulation of the pro-apoptotic protein Hid. Those results suggest that the sensitivity of EGFR/ERK pathway to mechanics could play a more general role in the fine tuning of cell elimination during morphogenesis and tissue homeostasis. Second, we assessed in vivo the contribution of compaction-driven death to pretumoral cell expansion. We found that the activation of the oncogene Ras in clones can downregulate ERK and activate apoptosis in the neighboring cells through their compaction, which eventually contributes to Ras clone expansion. The mechanical modulation of EGFR/ERK during growth-mediated competition for space may contribute to tumor progression. Caspase activity in Drosophila pupal notum is regulated by EGFR/ERK and hid EGFR/ERK can be activated or downregulated by tissue stretching or compaction Cell compaction near fast-growing clones downregulates ERK and triggers cell death Compaction-driven ERK downregulation promotes fast-growing clone expansion
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Affiliation(s)
- Eduardo Moreno
- Champalimaud Centre for the Unknown, Av. Brasília, 1400-038 Lisbon, Portugal.
| | - Léo Valon
- Department of Developmental and Stem Cell Biology, Institut Pasteur, 25 rue du Dr. Roux, 75015 Paris, France
| | - Florence Levillayer
- Department of Developmental and Stem Cell Biology, Institut Pasteur, 25 rue du Dr. Roux, 75015 Paris, France
| | - Romain Levayer
- Department of Developmental and Stem Cell Biology, Institut Pasteur, 25 rue du Dr. Roux, 75015 Paris, France.
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9
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Latorre E, Kale S, Casares L, Gómez-González M, Uroz M, Valon L, Nair RV, Garreta E, Montserrat N, Del Campo A, Ladoux B, Arroyo M, Trepat X. Active superelasticity in three-dimensional epithelia of controlled shape. Nature 2018; 563:203-208. [PMID: 30401836 DOI: 10.1038/s41586-018-0671-4] [Citation(s) in RCA: 140] [Impact Index Per Article: 23.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2017] [Accepted: 10/08/2018] [Indexed: 01/13/2023]
Abstract
Fundamental biological processes are carried out by curved epithelial sheets that enclose a pressurized lumen. How these sheets develop and withstand three-dimensional deformations has remained unclear. Here we combine measurements of epithelial tension and shape with theoretical modelling to show that epithelial sheets are active superelastic materials. We produce arrays of epithelial domes with controlled geometry. Quantification of luminal pressure and epithelial tension reveals a tensional plateau over several-fold areal strains. These extreme strains in the tissue are accommodated by highly heterogeneous strains at a cellular level, in seeming contradiction to the measured tensional uniformity. This phenomenon is reminiscent of superelasticity, a behaviour that is generally attributed to microscopic material instabilities in metal alloys. We show that in epithelial cells this instability is triggered by a stretch-induced dilution of the actin cortex, and is rescued by the intermediate filament network. Our study reveals a type of mechanical behaviour-which we term active superelasticity-that enables epithelial sheets to sustain extreme stretching under constant tension.
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Affiliation(s)
- Ernest Latorre
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute for Science and Technology (BIST), Barcelona, Spain.,LaCàN, Universitat Politècnica de Catalunya-BarcelonaTech, Barcelona, Spain
| | - Sohan Kale
- LaCàN, Universitat Politècnica de Catalunya-BarcelonaTech, Barcelona, Spain
| | - Laura Casares
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute for Science and Technology (BIST), Barcelona, Spain
| | - Manuel Gómez-González
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute for Science and Technology (BIST), Barcelona, Spain
| | - Marina Uroz
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute for Science and Technology (BIST), Barcelona, Spain
| | - Léo Valon
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute for Science and Technology (BIST), Barcelona, Spain
| | - Roshna V Nair
- INM-Leibniz Institut für Neue Materialien, Saarbrücken, Germany
| | - Elena Garreta
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute for Science and Technology (BIST), Barcelona, Spain
| | - Nuria Montserrat
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute for Science and Technology (BIST), Barcelona, Spain.,Centro de Investigación Biomédica en Red en Bioingeniería, Biomateriales y Nanomedicina, Barcelona, Spain
| | - Aránzazu Del Campo
- INM-Leibniz Institut für Neue Materialien, Saarbrücken, Germany.,Chemistry Department, Saarland University, Saarbrücken, Germany
| | - Benoit Ladoux
- CNRS UMR 7592, Institut Jacques Monod (IJM), Université Paris Diderot, Paris, France.,Mechanobiology Institute (MBI), National University of Singapore, Singapore, Singapore
| | - Marino Arroyo
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute for Science and Technology (BIST), Barcelona, Spain. .,LaCàN, Universitat Politècnica de Catalunya-BarcelonaTech, Barcelona, Spain.
| | - Xavier Trepat
- Institute for Bioengineering of Catalonia (IBEC), The Barcelona Institute for Science and Technology (BIST), Barcelona, Spain. .,Centro de Investigación Biomédica en Red en Bioingeniería, Biomateriales y Nanomedicina, Barcelona, Spain. .,Unitat de Biofísica i Bioenginyeria, Universitat de Barcelona, Barcelona, Spain. .,Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain.
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10
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di Pietro F, Valon L, Li Y, Goïame R, Genovesio A, Morin X. An RNAi Screen in a Novel Model of Oriented Divisions Identifies the Actin-Capping Protein Z β as an Essential Regulator of Spindle Orientation. Curr Biol 2017; 27:2452-2464.e8. [PMID: 28803871 DOI: 10.1016/j.cub.2017.06.055] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2017] [Revised: 05/06/2017] [Accepted: 06/20/2017] [Indexed: 10/19/2022]
Abstract
Oriented cell divisions are controlled by a conserved molecular cascade involving Gαi, LGN, and NuMA. We developed a new cellular model of oriented cell divisions combining micropatterning and localized recruitment of Gαi and performed an RNAi screen for regulators acting downstream of Gαi. Remarkably, this screen revealed a unique subset of dynein regulators as being essential for spindle orientation, shedding light on a core regulatory aspect of oriented divisions. We further analyze the involvement of one novel regulator, the actin-capping protein CAPZB. Mechanistically, we show that CAPZB controls spindle orientation independently of its classical role in the actin cytoskeleton by regulating the assembly, stability, and motor activity of the dynein/dynactin complex at the cell cortex, as well as the dynamics of mitotic microtubules. Finally, we show that CAPZB controls planar divisions in vivo in the developing neuroepithelium. This demonstrates the power of this in cellulo model of oriented cell divisions to uncover new genes required in spindle orientation in vertebrates.
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Affiliation(s)
- Florencia di Pietro
- Cell Division and Neurogenesis, IBENS, Département de Biologie, Ecole Normale Supérieure, CNRS, Inserm, PSL Research University, 75005 Paris, France; Sorbonne Universités, UPMC Université Paris 06, IFD, 4 Place Jussieu, 75252 Paris, France
| | - Léo Valon
- Laboratoire Physico-Chimie, Institut Curie, PSL Research University, CNRS, UPMC Université Paris 06, 75005 Paris, France
| | - Yingbo Li
- Cell Division and Neurogenesis, IBENS, Département de Biologie, Ecole Normale Supérieure, CNRS, Inserm, PSL Research University, 75005 Paris, France; Scientific Center for Computational Biology, IBENS, Département de Biologie, Ecole Normale Supérieure, CNRS, Inserm, PSL Research University, 75005 Paris, France
| | - Rosette Goïame
- Cell Division and Neurogenesis, IBENS, Département de Biologie, Ecole Normale Supérieure, CNRS, Inserm, PSL Research University, 75005 Paris, France
| | - Auguste Genovesio
- Scientific Center for Computational Biology, IBENS, Département de Biologie, Ecole Normale Supérieure, CNRS, Inserm, PSL Research University, 75005 Paris, France
| | - Xavier Morin
- Cell Division and Neurogenesis, IBENS, Département de Biologie, Ecole Normale Supérieure, CNRS, Inserm, PSL Research University, 75005 Paris, France.
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11
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Valon L, Marín-Llauradó A, Wyatt T, Charras G, Trepat X. Optogenetic control of cellular forces and mechanotransduction. Nat Commun 2017; 8:14396. [PMID: 28186127 PMCID: PMC5309899 DOI: 10.1038/ncomms14396] [Citation(s) in RCA: 133] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2016] [Accepted: 12/19/2016] [Indexed: 02/07/2023] Open
Abstract
Contractile forces are the end effectors of cell migration, division, morphogenesis, wound healing and cancer invasion. Here we report optogenetic tools to upregulate and downregulate such forces with high spatiotemporal accuracy. The technology relies on controlling the subcellular activation of RhoA using the CRY2/CIBN light-gated dimerizer system. We fused the catalytic domain (DHPH domain) of the RhoA activator ARHGEF11 to CRY2-mCherry (optoGEF-RhoA) and engineered its binding partner CIBN to bind either to the plasma membrane or to the mitochondrial membrane. Translocation of optoGEF-RhoA to the plasma membrane causes a rapid and local increase in cellular traction, intercellular tension and tissue compaction. By contrast, translocation of optoGEF-RhoA to mitochondria results in opposite changes in these physical properties. Cellular changes in contractility are paralleled by modifications in the nuclear localization of the transcriptional regulator YAP, thus showing the ability of our approach to control mechanotransductory signalling pathways in time and space.
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Affiliation(s)
- Léo Valon
- Institute for Bioengineering of Catalonia, Barcelona 08028, Spain
| | | | - Thomas Wyatt
- MRC Laboratory for Molecular Cell Biology, University College London, Gower Street, London WC1E 6BT, UK
- London Centre for Nanotechnology, London WC1H 0AH, UK
| | - Guillaume Charras
- London Centre for Nanotechnology, London WC1H 0AH, UK
- Department of Cell and Developmental Biology and Institute for the Physics of Living Systems, University College London, London WC1E 6BT, UK
| | - Xavier Trepat
- Institute for Bioengineering of Catalonia, Barcelona 08028, Spain
- Facultat de Medicina, Universitat de Barcelona, 08036 Barcelona, Spain
- Institució Catalana de Recerca i Estudis Avançats (ICREA), 08010 Barcelona, Spain
- Centro de Investigación Biomédica en Red en Bioingeniería, Biomateriales y Nanomedicina, Barcelona 08028, Spain
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12
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Sunyer R, Conte V, Escribano J, Elosegui-Artola A, Labernadie A, Valon L, Navajas D, Garcia-Aznar JM, Munoz JJ, Roca-Cusachs P, Trepat X. Collective cell durotaxis emerges from long-range intercellular force transmission. Science 2016; 353:1157-61. [DOI: 10.1126/science.aaf7119] [Citation(s) in RCA: 387] [Impact Index Per Article: 48.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2016] [Accepted: 07/27/2016] [Indexed: 12/29/2022]
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13
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Moeendarbary E, Valon L, Fritzsche M, Harris AR, Moulding DA, Thrasher AJ, Stride E, Mahadevan L, Charras GT. The cytoplasm of living cells behaves as a poroelastic material. Nat Mater 2013; 12:253-61. [PMID: 23291707 PMCID: PMC3925878 DOI: 10.1038/nmat3517] [Citation(s) in RCA: 341] [Impact Index Per Article: 31.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2012] [Accepted: 12/05/2012] [Indexed: 05/20/2023]
Abstract
The cytoplasm is the largest part of the cell by volume and hence its rheology sets the rate at which cellular shape changes can occur. Recent experimental evidence suggests that cytoplasmic rheology can be described by a poroelastic model, in which the cytoplasm is treated as a biphasic material consisting of a porous elastic solid meshwork (cytoskeleton, organelles, macromolecules) bathed in an interstitial fluid (cytosol). In this picture, the rate of cellular deformation is limited by the rate at which intracellular water can redistribute within the cytoplasm. However, direct supporting evidence for the model is lacking. Here we directly validate the poroelastic model to explain cellular rheology at short timescales using microindentation tests in conjunction with mechanical, chemical and genetic treatments. Our results show that water redistribution through the solid phase of the cytoplasm (cytoskeleton and macromolecular crowders) plays a fundamental role in setting cellular rheology at short timescales.
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Affiliation(s)
- Emad Moeendarbary
- London Centre for Nanotechnology, University College London, London, WC1E 6JF, UK
- Department of Mechanical Engineering, University College London, London, WC1E 6JF, UK
| | - Léo Valon
- London Centre for Nanotechnology, University College London, London, WC1E 6JF, UK
- Department of Physics, Ecole Normale Superieure, Paris, France
| | - Marco Fritzsche
- London Centre for Nanotechnology, University College London, London, WC1E 6JF, UK
- Department of Physics and Astronomy, University College London, London, WC1E 6JF, UK
| | - Andrew R. Harris
- London Centre for Nanotechnology, University College London, London, WC1E 6JF, UK
- Department of Physics and Astronomy, University College London, London, WC1E 6JF, UK
| | - Dale A. Moulding
- Molecular Immunology Unit, Institute of Child Health, University College London, London, WC1E 6JF, UK
| | - Adrian J. Thrasher
- Molecular Immunology Unit, Institute of Child Health, University College London, London, WC1E 6JF, UK
| | - Eleanor Stride
- Institute of Biomedical Engineering, Department of Engineering Science, University of Oxford, Oxford OX1 3PJ, UK
| | - L. Mahadevan
- School of Engineering and Applied Sciences, Department of Physics, Harvard University, Cambridge, MA 02138, USA
| | - Guillaume T. Charras
- London Centre for Nanotechnology, University College London, London, WC1E 6JF, UK
- Department of Cell and Developmental Biology, University College London, London, WC1E 6JF, UK
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