1
|
Varsi F, Ahmad S, Chakraborty M, Chandra A, Dugad SR, Goswami UD, Gupta SK, Hariharan B, Hayashi Y, Jagadeesan P, Jain A, Jain P, Kawakami S, Kojima H, Lipari P, Mahapatra S, Mohanty PK, Moharana R, Muraki Y, Nayak PK, Nonaka T, Oshima A, Pant BP, Pattanaik D, Paul S, Pradhan GS, Rameez M, Ramesh K, Reddy LV, Saha S, Sahoo R, Scaria R, Shibata S, Zuberi M. Evidence of a Hardening in the Cosmic Ray Proton Spectrum at around 166 TeV Observed by the GRAPES-3 Experiment. Phys Rev Lett 2024; 132:051002. [PMID: 38364164 DOI: 10.1103/physrevlett.132.051002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Revised: 10/16/2023] [Accepted: 01/04/2024] [Indexed: 02/18/2024]
Abstract
We present the measurement of the cosmic ray proton spectrum from 50 TeV to 1.3 PeV using 7.81×10^{6} extensive air shower events recorded by the ground-based GRAPES-3 experiment between 1 January 2014 and 26 October 2015 with a live time of 460 day. Our measurements provide an overlap with direct observations by satellite and balloon-based experiments. The electromagnetic and muon components in the shower were measured by a dense array of plastic scintillator detectors and a tracking muon telescope, respectively. The relative composition of the proton primary from the air shower data containing all primary particles was extracted using the multiplicity distribution of muons which is a sensitive observable for mass composition. The observed proton spectrum suggests a spectral hardening at ∼166 TeV and disfavors a single power law description of the spectrum up to the Knee energy (∼3 PeV).
Collapse
Affiliation(s)
- F Varsi
- Indian Institute of Technology Kanpur, Kanpur 208016, India
| | - S Ahmad
- Aligarh Muslim University, Aligarh 202002, India
| | - M Chakraborty
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
| | - A Chandra
- Aligarh Muslim University, Aligarh 202002, India
| | - S R Dugad
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
| | - U D Goswami
- Dibrugarh University, Dibrugarh 786004, India
| | - S K Gupta
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
| | - B Hariharan
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
| | - Y Hayashi
- Graduate School of Science, Osaka Metropolitan University, Sugimoto, Sumiyoshi, Osaka 558-8585, Japan
| | - P Jagadeesan
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
| | - A Jain
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
| | - P Jain
- Indian Institute of Technology Kanpur, Kanpur 208016, India
| | - S Kawakami
- Graduate School of Science, Osaka Metropolitan University, Sugimoto, Sumiyoshi, Osaka 558-8585, Japan
| | - H Kojima
- College of Engineering, Chubu University, Kasugai, Aichi 487-8501, Japan
| | - P Lipari
- INFN, Sezione Roma "Sapienza", Piazzale Aldo Moro 2, 00185 Roma, Italy
| | | | - P K Mohanty
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
| | - R Moharana
- Indian Institute of Technology Jodhpur, Jodhpur 342037, India
| | - Y Muraki
- Institute for Space-Earth Environmental Research, Nagoya University, Nagoya 464-8601, Japan
| | - P K Nayak
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
| | - T Nonaka
- Institute for Cosmic Ray Research, Tokyo University, Kashiwa, Chiba 277-8582, Japan
| | - A Oshima
- College of Engineering, Chubu University, Kasugai, Aichi 487-8501, Japan
| | - B P Pant
- Indian Institute of Technology Jodhpur, Jodhpur 342037, India
| | - D Pattanaik
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
- Utkal University, Bhubaneswar 751004, India
| | - S Paul
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
| | - G S Pradhan
- Indian Institute of Technology Indore, Indore 453552, India
| | - M Rameez
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
| | - K Ramesh
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
| | - L V Reddy
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
| | - S Saha
- Indian Institute of Technology Kanpur, Kanpur 208016, India
| | - R Sahoo
- Indian Institute of Technology Indore, Indore 453552, India
| | - R Scaria
- Indian Institute of Technology Indore, Indore 453552, India
| | - S Shibata
- College of Engineering, Chubu University, Kasugai, Aichi 487-8501, Japan
| | - M Zuberi
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
| |
Collapse
|
2
|
Hariharan B, Chandra A, Dugad SR, Gupta SK, Jagadeesan P, Jain A, Mohanty PK, Morris SD, Nayak PK, Rakshe PS, Ramesh K, Rao BS, Reddy LV, Zuberi M, Hayashi Y, Kawakami S, Ahmad S, Kojima H, Oshima A, Shibata S, Muraki Y, Tanaka K. Measurement of the Electrical Properties of a Thundercloud Through Muon Imaging by the GRAPES-3 Experiment. Phys Rev Lett 2019; 122:105101. [PMID: 30932668 DOI: 10.1103/physrevlett.122.105101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2019] [Revised: 01/21/2019] [Indexed: 06/09/2023]
Abstract
The GRAPES-3 muon telescope located in Ooty, India records rapid (∼10 min) variations in the muon intensity during major thunderstorms. Out of a total of 184 thunderstorms recorded during the interval of April 2011-December 2014, the one on December 1, 2014 produced a massive potential of 1.3 GV. The electric field measured by four well-separated (up to 6 km) monitors on the ground was used to help estimate some of the properties of this thundercloud, including its altitude and area that were found to be 11.4 km above mean sea level and ≥380 km^{2}, respectively. A charging time of 6 min to reach 1.3 GV implied the delivery of a power of ≥2 GW by this thundercloud that was moving at a speed of ∼60 km h^{-1}. This work possibly provides the first direct evidence for the generation of gigavolt potentials in thunderclouds that could also possibly explain the production of highest-energy (100 MeV) gamma rays in the terrestrial gamma-ray flashes.
Collapse
Affiliation(s)
- B Hariharan
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
| | - A Chandra
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
| | - S R Dugad
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
| | - S K Gupta
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
| | - P Jagadeesan
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
| | - A Jain
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
| | - P K Mohanty
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
| | - S D Morris
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
| | - P K Nayak
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
| | - P S Rakshe
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
| | - K Ramesh
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
| | - B S Rao
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
| | - L V Reddy
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
| | - M Zuberi
- Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai 400005, India
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
| | - Y Hayashi
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
- Graduate School of Science, Osaka City University, Osaka 558-8585, Japan
| | - S Kawakami
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
- Graduate School of Science, Osaka City University, Osaka 558-8585, Japan
| | - S Ahmad
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
- Aligarh Muslim University, Aligarh 202002, India
| | - H Kojima
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
- College of Engineering, Chubu University, Kasugai, Aichi 487-8501, Japan
| | - A Oshima
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
- College of Engineering, Chubu University, Kasugai, Aichi 487-8501, Japan
| | - S Shibata
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
- College of Engineering, Chubu University, Kasugai, Aichi 487-8501, Japan
| | - Y Muraki
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
- Institute for Space-Earth Environmental Research, Nagoya University, Nagoya, Aichi 446-8601, Japan
| | - K Tanaka
- Cosmic Ray Laboratory, Raj Bhavan, Ooty 643001, India
- Graduate School of Information Sciences, Hiroshima City University, Hiroshima 731-3194, Japan
| |
Collapse
|
3
|
Mohanty P, Arunbabu K, Aziz T, Dugad S, Gupta S, Hariharan B, Jagadeesan P, Jain A, Morris S, Nayak P, Rakshe P, Ramesh K, Rao B, Zuberi M, Hayashi Y, Kawakami S, Subramanian P, Raha S, Ahmad S, Oshima A, Shibata S, Kojima H. Was the cosmic ray burst detected by the GRAPES-3 muon telescope on 22 June 2015 caused by a transient weakening of the geomagnetic field or by an interplanetary anisotropy? Int J Clin Exp Med 2018. [DOI: 10.1103/physrevd.97.082001] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
|
4
|
Bhat M, Guru S, Zuberi M, Sumi M, Gupta N, Saxena A. RIZ1 gene promoter hypermethylation is responsible for downregulation of its expression with progression of chronic myeloid leukaemia to advanced phases. Eur J Cancer 2017. [DOI: 10.1016/s0959-8049(17)30408-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
|
5
|
Mir R, Ahmad I, Javid J, Zuberi M, Yadav P, Shazia R, Masroor M, Guru S, Ray PC, Gupta N, Saxena A. Simple multiplex RT-PCR for identifying common fusion BCR-ABL transcript types and evaluation of molecular response of the a2b2 and a2b3 transcripts to Imatinib resistance in north Indian chronic myeloid leukemia patients. Indian J Cancer 2016; 52:314-8. [PMID: 26905124 DOI: 10.4103/0019-509x.176741] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
INTRODUCTION Chronic myeloid leukemia (CML) is characterized by the Philadelphia chromosome, an abnormally shortened chromosome 22. It is the result of a reciprocal translocation of chromosomes 9 and 22, creating BCR-ABL fusion transcripts, b3a2, b2a2, and e1a2. The aim of our study was to determine the type of BCR-ABL fusion transcripts for molecular diagnosis and investigate the frequency of BCR-ABL fusion transcripts in CML patients by multiplex RT-PCR in CML. MATERIALS AND METHODS A single reaction with multiple primers multiplex PCR was used to detect and investigate the type and frequency in 200 CML patients among which 116, 33, and 51 were in CP, AP, and BC phase, respectively. RESULTS The study included 200 CML patients, among whom breakpoints in b3a2, b2a2 transcripts were detected in 68% and 24%, respectively, while 8% of the patients showed both b3a2/b2a2. A statistically significant difference was seen between frequency of BCR-ABL fusion transcripts and gender (P = 0.03), molecular response (P = 0.04), and hematological response (P = 0.05). However, there was no correlation found between frequencies of BCR-/ABL fusion transcripts and other clinicopathological parameters like age, type of therapy, thrombocytopenia, and white blood cell count. CONCLUSION Multiplex reverse transcriptase-polymerase chain reaction is useful and saves time in the detection of BCR-ABL variants; the occurrence of these transcripts associated with CML can assist in prognosis and treatment of disease.
Collapse
Affiliation(s)
| | | | | | | | | | | | | | | | | | | | - A Saxena
- Cancer Genetics Lab, Department of Biochemistry and Associated Hospitals, New Delhi, India
| |
Collapse
|
6
|
Yadav P, Masroor M, Tanwer K, Mir R, Javid J, Ahmad I, Zuberi M, Kaza RCM, Jain SK, Khurana N, Ray PC, Saxena A. Clinical significance of TP53 (R72P) and MDM2 (T309G) polymorphisms in breast cancer patients. Clin Transl Oncol 2015; 18:728-34. [PMID: 26553387 DOI: 10.1007/s12094-015-1425-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2015] [Accepted: 10/08/2015] [Indexed: 12/16/2022]
Abstract
INTRODUCTION TP53 gene is the most frequently altered tumor suppressor gene in breast cancer. It has been observed that MDM2 plays a central role in regulating the TP53 pathway. This study aimed to investigate the role of TP53 Arg72Pro and MDM2 T309G polymorphisms in breast cancer patients. MATERIAL AND METHOD The TP53 (Arg72Pro) and MDM2 (T309G) polymorphisms were studied in a hospital-based case control study by AS-PCR in 100 breast cancer patients and 100 healthy control subjects. RESULTS It was observed that TP53 Arg72Pro polymorphism was significantly associated with breast cancer (χ (2) = 9.92, p = 0.007). A significantly increased breast cancer risk was associated with the Proline allele [odds ratio 1.84 (95 % CI: 1.22-2.77), risk ratio 1.34 (95 % CI: 1.11-1.63), p value 0.003], HER2/neu status (p = 0.01) and distant metastasis (p = 0.05). On the other hand, we have found a significant correlation between MDM2 (T309G) polymorphism with HER2/neu status (χ (2) = 11.14, p = 0.003) and distant metastasis (p value = 0.04). CONCLUSION Our finding suggests that TP53 (Arg72Pro) polymorphism may play a significant role as risk factor for breast cancer in north Indian breast cancer patients. While MDM2 (T309G) polymorphism may not be directly associated with the risk of breast cancer occurrence in the same population, but it may play role in disease progression by triggering TP53.
Collapse
Affiliation(s)
- P Yadav
- Department of Biochemistry, Maulana Azad Medical College and Associated Hospitals, New Delhi, 110002, India
| | - M Masroor
- Department of Biochemistry, Maulana Azad Medical College and Associated Hospitals, New Delhi, 110002, India
| | - K Tanwer
- Department of Biochemistry, Maulana Azad Medical College and Associated Hospitals, New Delhi, 110002, India
| | - R Mir
- Faculty of Applied Medical Sciences, University of Tabuk, Tabuk, 71491, Saudi Arabia
| | - J Javid
- Faculty of Applied Medical Sciences, University of Tabuk, Tabuk, 71491, Saudi Arabia
| | - I Ahmad
- Department of Biochemistry, Maulana Azad Medical College and Associated Hospitals, New Delhi, 110002, India
| | - M Zuberi
- Department of Biochemistry, Maulana Azad Medical College and Associated Hospitals, New Delhi, 110002, India
| | - R C M Kaza
- Department of Surgery, Maulana Azad Medical College and Associated Hospitals, New Delhi, India
| | - S K Jain
- Department of Surgery, Maulana Azad Medical College and Associated Hospitals, New Delhi, India
| | - N Khurana
- Department of Pathology, Maulana Azad Medical College and Associated Hospitals, New Delhi, India
| | - P C Ray
- Department of Biochemistry, Maulana Azad Medical College and Associated Hospitals, New Delhi, 110002, India
| | - A Saxena
- Department of Biochemistry, Maulana Azad Medical College and Associated Hospitals, New Delhi, 110002, India.
| |
Collapse
|
7
|
Zuberi M, Mir R, Das J, Ahmad I, Javid J, Yadav P, Masroor M, Ahmad S, Ray PC, Saxena A. Expression of serum miR-200a, miR-200b, and miR-200c as candidate biomarkers in epithelial ovarian cancer and their association with clinicopathological features. Clin Transl Oncol 2015; 17:779-87. [PMID: 26063644 DOI: 10.1007/s12094-015-1303-1] [Citation(s) in RCA: 110] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2015] [Accepted: 05/13/2015] [Indexed: 12/26/2022]
Abstract
BACKGROUND MicroRNAs (miRs) have been implicated in the etiology of various human cancers. The aim of this study was to investigate the association of the expression of three members--miR 200a, miR 200b, and miR 200c belonging to the miR-200 family with clinicopathological characteristics and their impact on the progression of epithelial ovarian cancer (EOC). MATERIALS AND METHODS Total RNA from serum was isolated by Trizol method, polyadenylated, and reverse transcribed into cDNA. Expression levels of miR-200a, miR-200b, and miR-200c were detected by using miRNA qRT-PCR. We measured miR expression in 70 serum samples of EOC patients with matched controls using U6 snRNA as a reference. Levels of miR expression was compared with distinct clinicopathological features. RESULTS Expression of miR-200a was found to be greater than six-fold (p = 0.01), miR-200b and miR-200c greater than three-fold (p = 0.01) in comparison with matched normal controls. Association of miRNA expression with clinicopathological factors and progression was statistically evaluated. The expression levels of miR-200a and miR-200c were found to be significantly associated with disease progression (p = 0.04 and p < 0.001, respectively). miR-200a overexpression was found be associated with tumor histology and stage. Patients with lymph node metastasis showed significant elevation of miR-200c (p = 0.006). The AUC in ROC curve also indicated that serum levels of miR-200a and miR-200c might be worthwhile as a diagnostic tool in the near future. CONCLUSION Our findings suggest that miR-200a, miR-200b, and miR-200c overexpressions are associated with the aggressive tumor progression and be recognized as reliable markers to predict the prognosis and survival in EOC patients.
Collapse
MESH Headings
- Adenocarcinoma, Clear Cell/blood
- Adenocarcinoma, Clear Cell/genetics
- Adenocarcinoma, Clear Cell/pathology
- Adenocarcinoma, Mucinous/blood
- Adenocarcinoma, Mucinous/genetics
- Adenocarcinoma, Mucinous/pathology
- Adenocarcinoma, Papillary/blood
- Adenocarcinoma, Papillary/genetics
- Adenocarcinoma, Papillary/pathology
- Adult
- Area Under Curve
- Biomarkers, Tumor/blood
- Biomarkers, Tumor/genetics
- Carcinoma, Endometrioid/blood
- Carcinoma, Endometrioid/genetics
- Carcinoma, Endometrioid/pathology
- Carcinoma, Ovarian Epithelial
- Case-Control Studies
- Disease Progression
- Female
- Gene Expression Regulation, Neoplastic
- Humans
- Lymph Nodes/pathology
- Lymphatic Metastasis
- MicroRNAs/blood
- MicroRNAs/genetics
- Middle Aged
- Neoplasm Staging
- Neoplasms, Cystic, Mucinous, and Serous/blood
- Neoplasms, Cystic, Mucinous, and Serous/genetics
- Neoplasms, Cystic, Mucinous, and Serous/pathology
- Neoplasms, Glandular and Epithelial/blood
- Neoplasms, Glandular and Epithelial/genetics
- Neoplasms, Glandular and Epithelial/pathology
- Ovarian Neoplasms/blood
- Ovarian Neoplasms/genetics
- Ovarian Neoplasms/pathology
- Prognosis
- ROC Curve
- Reverse Transcriptase Polymerase Chain Reaction
- Sensitivity and Specificity
- Tumor Burden
- Up-Regulation
Collapse
Affiliation(s)
- M Zuberi
- Department of Biochemistry, Maulana Azad Medical College, New Delhi, 110002, India
| | - R Mir
- Prince Fahd Bin Sultan Research Chair, University of Tabuk, Tabuk, 71491, Saudi Arabia
| | - J Das
- Department of Biochemistry, Maulana Azad Medical College, New Delhi, 110002, India
| | - I Ahmad
- Department of Biochemistry, Maulana Azad Medical College, New Delhi, 110002, India
| | - J Javid
- Department of Biochemistry, Maulana Azad Medical College, New Delhi, 110002, India
| | - P Yadav
- Department of Biochemistry, Maulana Azad Medical College, New Delhi, 110002, India
| | - M Masroor
- Department of Biochemistry, Maulana Azad Medical College, New Delhi, 110002, India
| | - S Ahmad
- Department of Biochemistry, Maulana Azad Medical College, New Delhi, 110002, India
| | - P C Ray
- Department of Biochemistry, Maulana Azad Medical College, New Delhi, 110002, India
| | - A Saxena
- Department of Biochemistry, Maulana Azad Medical College, New Delhi, 110002, India.
| |
Collapse
|
8
|
Zuberi M, Mir R, Ahmad I, Javid J, Yadav P, Guru S, Masroor M, Bhat M, Ray P, Gandhi G, Saxena A. Epigenetic Signatures of Rassf1 and Pten Genes As Potential Candidates for Targeting Epithelial Ovarian Cancer. Ann Oncol 2014. [DOI: 10.1093/annonc/mdu338.30] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
|
9
|
Mir A, Javaid J, Masroor M, Ahmad I, Yadav P, Zuberi M, Lone M, Mohan A, Ray P, Saxena A. 17P CLINICAL AND PROGNOSTIC IMPLICATIONS DUE TO DELETIONS IN THE P53 GENE IN NON SMALL CELL LUNG CANCER PATIENTS. Lung Cancer 2013. [DOI: 10.1016/s0169-5002(13)70238-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|
10
|
Chow E, Zuberi M, Seto R, Hota S, Fish EN, Morra D. Using real-time alerts for clinical trials: Identifying potential study subjects. Appl Clin Inform 2011; 2:472-80. [PMID: 23616889 DOI: 10.4338/aci-2011-04-cr-0026] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2011] [Accepted: 10/10/2011] [Indexed: 11/23/2022] Open
Abstract
BACKGROUND Clinical trials are widely accepted as a necessary step in evaluating the safety and efficacy of new pharmaceutical products. In order for a sufficiently powered study, a clinical trial depends on the effective and unbiased recruitment of eligible patients. Trials involving seasonal diseases like influenza pose additional challenges. OBJECTIVE This is a feasibility study of a mobile real-time alerting system to systematically identify potential study subjects for a randomized controlled trial evaluating the safety and efficacy of early intervention with interferon alfacon-1 for patients hospitalized for influenza virus infection. METHODS The alerting system was setup in a 471-bed acute care teaching hospital, enabled with computerized physician order entry (CPOE) and a rules-based alerting system. Patients were identified from the entire hospital using two alerts types: pharmacy prescription records for antiviral drugs, and positive influenza laboratory results. Email alerts were generated and sent to BlackBerry(®) devices carried by the study personnel for a 6 month period. The alerts were archived automatically on a secure server and were exported for analysis in Microsoft Access. RESULTS Over a period of 21 weeks, 779 total alerts were received. The study team was alerted to 241 patients, of whom 85 were potential study subjects. The alert system identified all but one of the patients independently identified by infection control. CONCLUSIONS Real-time identification of potential study subjects is possible with the integration of computerized physician order entry and BlackBerry(®) technology. It is a viable method for the systematic identification of patients throughout a hospital, particularly for trials investigating time-sensitive disease progression.
Collapse
Affiliation(s)
- E Chow
- Centre for Innovation in Complex Care , University Health Network
| | | | | | | | | | | |
Collapse
|
11
|
Hoyos M, Moore LR, McCloskey KE, Margel S, Zuberi M, Chalmers JJ, Zborowski M. Study of magnetic particles pulse-injected into an annular SPLITT-like channel inside a quadrupole magnetic field. J Chromatogr A 2000; 903:99-116. [PMID: 11153960 DOI: 10.1016/s0021-9673(00)00879-7] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
Advantages of the continuous magnetic flow sorting for biomedical applications over current, batch-wise magnetic separations include high throughput and a potential for scale-up operations. A continuous magnetic sorting process has been developed based on the quadrupole magnetic field centered on an annular flow channel. The performance of the sorter has been described using the conceptual framework of split-flow thin (SPLITT) fractionation, a derivative of field-flow fractionation (FFF). To eliminate the variability inherent in working with a heterogenous cell population, we developed a set of monodisperse magnetic microspheres of a characteristic magnetization, and a magnetophoretic mobility, similar to those of the cells labeled with a magnetic colloid. The theory of the magnetic sorting process has been tested by injecting a suspension of the magnetic beads into the carrier fluid flowing through the sorter and by comparing the theoretical and experimental recovery versus total flow-rate profiles. The position of the recovery maxima along the total flow-rate axis was a function of the average bead magnetophoretic mobility and the magnetic field intensity. The theory has correctly predicted the position of the peak maxima on the total flow-rate axis and the dependence on the bead mobility and the field intensity, but has not correctly predicted the peak heights. The differences between the calculated and the measured peak heights were a function of the total flow-rate through the system, indicating a fluid-mechanical origin of the deviations from the theory (such as expected of the lift force effects in the system). The well-controlled elution studies using the monodisperse magnetic beads, and the SPLITT theory, provided us with a firm basis for the future sorter evaluation using cell mixtures.
Collapse
Affiliation(s)
- M Hoyos
- Ecole Supérieure de Physique et Chimie Industrielles, Laboratoire de Physique et Mécanique des Milieux Hétérogènes, UMR 7636 CNRS, Paris, France
| | | | | | | | | | | | | |
Collapse
|
12
|
Moore LR, Zborowski M, Nakamura M, McCloskey K, Gura S, Zuberi M, Margel S, Chalmers JJ. The use of magnetite-doped polymeric microspheres in calibrating cell tracking velocimetry. J Biochem Biophys Methods 2000; 44:115-30. [PMID: 10889282 DOI: 10.1016/s0165-022x(00)00085-3] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Abstract
Continuous magnetic separation, in which there is no accumulation of mass in the system, is an inherently dynamic process, requiring advanced knowledge of the separable species for optimal instrument operation. By determining cell magnetization in a well-defined field, we may predict the cell trajectory behavior in the well-characterized field environments of our continuous separators. Magnetization is determined by tracking the migration of particles with a technique known as cell tracking velocimetry (CTV). The validation of CTV requires calibration against an external standard. Furthermore, such a standard, devoid of the variations and instabilities of biological systems, is needed to reference the method against day-to-day shifts or trends. To this end, a method of synthesizing monodisperse, magnetite-doped polymeric microspheres has been developed. Five sets of microspheres differing in their content of magnetite, and each of approximately 2.7 microm diameter, are investigated. An average gradient of 0.18 T/mm induces magnetic microsphere velocities ranging from 0.45 to 420 microns/s in the CTV device. The velocities enable calculation of the microsphere magnetization. Magnetometer measurements permit the determination of magnetization at a flux density comparable to that of the CTV magnet's analysis region, 1.57 T. A comparison of the results of the CTV and magnetometer measurements shows good agreement.
Collapse
Affiliation(s)
- L R Moore
- Department of Biomedical Engineering, The Cleveland Clinic Foundation, 9500 Euclid Avenue, Cleveland, OH 44195, USA.
| | | | | | | | | | | | | | | |
Collapse
|