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Abbas N, Riaz S, Mazhar S, Essa R, Maryam M, Saleem Y, Syed Q, Perveen I, Bukhari B, Ashfaq S, Abidi SHI. Microbial production of docosahexaenoic acid (DHA): biosynthetic pathways, physical parameter optimization, and health benefits. Arch Microbiol 2023; 205:321. [PMID: 37642791 DOI: 10.1007/s00203-023-03666-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Revised: 08/06/2023] [Accepted: 08/18/2023] [Indexed: 08/31/2023]
Abstract
Omega-3 fatty acids, including docosahexaenoic acid (DHA), eicosapentaenoic acid (EPA), and α-linolenic acid (ALA), are essential polyunsaturated fatty acids with diverse health benefits. The limited conversion of dietary DHA necessitates its consumption as food supplements. Omega-3 fatty acids possess anti-arrhythmic and anti-inflammatory capabilities, contributing to cardiovascular health. Additionally, DHA consumption is linked to improved vision, brain, and memory development. Furthermore, omega-3 fatty acids offer protection against various health conditions, such as celiac disease, Alzheimer's, hypertension, thrombosis, heart diseases, depression, diabetes, and certain cancers. Fish oil from pelagic cold-water fish remains the primary source of omega-3 fatty acids, but the global population burden creates a demand-supply gap. Thus, researchers have explored alternative sources, including microbial systems, for omega-3 production. Microbial sources, particularly oleaginous actinomycetes, microalgae like Nannochloropsis and among microbial systems, Thraustochytrids stand out as they can store up to 50% of their dry weight in lipids. The microbial production of omega-3 fatty acids is a potential solution to meet the global demand, as these microorganisms can utilize various carbon sources, including organic waste. The biosynthesis of omega-3 fatty acids involves both aerobic and anaerobic pathways, with bacterial polyketide and PKS-like PUFA synthase as essential enzymatic complexes. Optimization of physicochemical parameters, such as carbon and nitrogen sources, pH, temperature, and salinity, plays a crucial role in maximizing DHA production in microbial systems. Overall, microbial sources hold significant promise in meeting the global demand for omega-3 fatty acids, offering an efficient and sustainable solution for enhancing human health.
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Affiliation(s)
- Naaz Abbas
- Pakistan Council of Scientific and Industrial Research (PCSIR) Laboratories Complex Ferozepur Road, Lahore, Pakistan
| | - Sana Riaz
- Pakistan Council of Scientific and Industrial Research (PCSIR) Laboratories Complex Ferozepur Road, Lahore, Pakistan.
| | - Sania Mazhar
- Pakistan Council of Scientific and Industrial Research (PCSIR) Laboratories Complex Ferozepur Road, Lahore, Pakistan
| | - Ramsha Essa
- Pakistan Council of Scientific and Industrial Research (PCSIR) Laboratories Complex Ferozepur Road, Lahore, Pakistan
| | - Maria Maryam
- Pakistan Council of Scientific and Industrial Research (PCSIR) Laboratories Complex Ferozepur Road, Lahore, Pakistan
| | - Yasar Saleem
- Pakistan Council of Scientific and Industrial Research (PCSIR) Laboratories Complex Ferozepur Road, Lahore, Pakistan
| | - Quratulain Syed
- Pakistan Council of Scientific and Industrial Research (PCSIR) Laboratories Complex Ferozepur Road, Lahore, Pakistan
| | - Ishrat Perveen
- Pakistan Council of Scientific and Industrial Research (PCSIR) Laboratories Complex Ferozepur Road, Lahore, Pakistan
| | - Bakhtawar Bukhari
- Pakistan Council of Scientific and Industrial Research (PCSIR) Laboratories Complex Ferozepur Road, Lahore, Pakistan
| | - Saira Ashfaq
- Pakistan Council of Scientific and Industrial Research (PCSIR) Laboratories Complex Ferozepur Road, Lahore, Pakistan
| | - Syed Hussain Imam Abidi
- Pakistan Council of Scientific and Industrial Research (PCSIR) Laboratories Complex Ferozepur Road, Lahore, Pakistan
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Riaz S, Mazhar S, Abidi SH, Syed Q, Abbas N, Saleem Y, Nadeem AA, Maryam M, Essa R, Ashfaq S. Biobutanol production from sustainable biomass process of anaerobic ABE fermentation for industrial applications. Arch Microbiol 2022; 204:672. [PMID: 36251102 DOI: 10.1007/s00203-022-03284-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Revised: 10/04/2022] [Accepted: 10/10/2022] [Indexed: 11/28/2022]
Abstract
The growing population increases the need to develop advanced biological methods for utilizing renewable and sustainable resources to produce environmentally friendly biofuels. Currently, energy resources are limited for global demand and are constantly depleting and creating environmental problems. Some higher chain alcohols, like butanol and ethanol, processing similar properties to gasoline, can be alternate sources of biofuel. However, the industrial production of these alcohols remains challenging because they cannot be efficiently produced by microbes naturally. Therefore, butanol is the most interesting biofuel candidate with a higher octane number produced naturally by microbes through Acetone-Butanol-Ethanol fermentation. Feedstock selection as the substrate is the most crucial step in biobutanol production. Lignocellulosic biomass has been widely used to produce cellulosic biobutanol using agricultural wastes and residue. Specific necessary pretreatments, fermentation strategies, bioreactor designing and kinetics, and modeling can also enhance the efficient production of biobutanol. The recent genetic engineering approaches of gene knock in, knock out, and overexpression to manipulate pathways can increase the production of biobutanol in a user friendly host organism. So far various genetic manipulation techniques like antisense RNA, TargeTron Technology and CRISPR have been used to target Clostridium acetobutylicum for biobutanol production. This review summarizes the recent research and development for the efficient production of biobutanol in various aspects.
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Affiliation(s)
- Sana Riaz
- Food and Biotechnology Research Centre, Pakistan Council of Scientific and Industrial Research (PCSIR), Laboratories Complex Ferozepur Road, Lahore, Pakistan.
| | - Sania Mazhar
- Food and Biotechnology Research Centre, Pakistan Council of Scientific and Industrial Research (PCSIR), Laboratories Complex Ferozepur Road, Lahore, Pakistan
| | - Syed Hussain Abidi
- Food and Biotechnology Research Centre, Pakistan Council of Scientific and Industrial Research (PCSIR), Laboratories Complex Ferozepur Road, Lahore, Pakistan.,Pakistan Council of Scientific and Industrial Research (PCSIR) Laboratories, Islamabad, Pakistan.,Pakistan Council of Scientific and Industrial Research (PCSIR) Laboratories Complex Ferozepur Road, Lahore, Pakistan
| | - Quratulain Syed
- Pakistan Council of Scientific and Industrial Research (PCSIR) Laboratories Complex Ferozepur Road, Lahore, Pakistan
| | - Naaz Abbas
- Food and Biotechnology Research Centre, Pakistan Council of Scientific and Industrial Research (PCSIR), Laboratories Complex Ferozepur Road, Lahore, Pakistan
| | - Yasar Saleem
- Food and Biotechnology Research Centre, Pakistan Council of Scientific and Industrial Research (PCSIR), Laboratories Complex Ferozepur Road, Lahore, Pakistan
| | - Abad Ali Nadeem
- Pakistan Council of Scientific and Industrial Research (PCSIR) Laboratories Complex Ferozepur Road, Lahore, Pakistan
| | - Maria Maryam
- Food and Biotechnology Research Centre, Pakistan Council of Scientific and Industrial Research (PCSIR), Laboratories Complex Ferozepur Road, Lahore, Pakistan
| | - Ramsha Essa
- Food and Biotechnology Research Centre, Pakistan Council of Scientific and Industrial Research (PCSIR), Laboratories Complex Ferozepur Road, Lahore, Pakistan
| | - Saira Ashfaq
- Food and Biotechnology Research Centre, Pakistan Council of Scientific and Industrial Research (PCSIR), Laboratories Complex Ferozepur Road, Lahore, Pakistan
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Maryam M, Fu MS, Alanio A, Camacho E, Goncalves DS, Faneuff EE, Grossman NT, Casadevall A, Coelho C. The enigmatic role of fungal annexins: the case of Cryptococcus neoformans. Microbiology (Reading) 2019; 165:852-862. [PMID: 31140968 DOI: 10.1099/mic.0.000815] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Annexins are multifunctional proteins that bind to phospholipid membranes in a calcium-dependent manner. Annexins play a myriad of critical and well-characterized roles in mammals, ranging from membrane repair to vesicular secretion. The role of annexins in the kingdoms of bacteria, protozoa and fungi have been largely overlooked. The fact that there is no known homologue of annexins in the yeast model organism Saccharomyces cerevisiae may contribute to this gap in knowledge. However, annexins are found in most medically important fungal pathogens, with the notable exception of Candida albicans. In this study we evaluated the function of the one annexin gene in Cryptococcus neoformans, a causative agent of cryptococcosis. This gene CNAG_02415, is annotated in the C. neoformans genome as a target of calcineurin through its transcription factor Crz1, and we propose to update its name to cryptococcal annexin, AnnexinC1. C. neoformans strains deleted for AnnexinC1 revealed no difference in survival after exposure to various chemical stressors relative to wild-type strain, as well as no major alteration in virulence or mating. The only alteration observed in strains deleted for AnnexinC1 was a small increase in the titan cells' formation in vitro. The preservation of annexins in many different fungal species suggests an important function, and therefore the lack of a strong phenotype for annexin-deficient C. neoformans indicates either the presence of redundant genes that can compensate for the absence of AnnexinC1 function or novel functions not revealed by standard assays of cell function and pathogenicity.
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Affiliation(s)
- Maria Maryam
- W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins University Bloomberg School of Public Health, Baltimore MD, USA
| | - Man Shun Fu
- W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins University Bloomberg School of Public Health, Baltimore MD, USA
| | - Alexandre Alanio
- Institut Pasteur, Molecular Mycology Unit, CNRS UMR2000, Université Paris Diderot, Sorbonne Paris Cité ; Laboratoire de Parasitologie-Mycologie, Hôpital Saint-Louis, Groupe Hospitalier Lariboisière, Saint-Louis, Fernand Widal, Assistance Publique-Hôpitaux de Paris (AP-HP), Paris, France.,W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins University Bloomberg School of Public Health, Baltimore MD, USA
| | - Emma Camacho
- W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins University Bloomberg School of Public Health, Baltimore MD, USA
| | - Diego S Goncalves
- W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins University Bloomberg School of Public Health, Baltimore MD, USA.,Universidade Federal Fluminense, Rio Janeiro, Brazil
| | - Eden E Faneuff
- W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins University Bloomberg School of Public Health, Baltimore MD, USA.,Department of Biological Sciences, California State Polytechnic University, Pomona CA, USA
| | - Nina T Grossman
- W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins University Bloomberg School of Public Health, Baltimore MD, USA
| | - Arturo Casadevall
- W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins University Bloomberg School of Public Health, Baltimore MD, USA
| | - Carolina Coelho
- W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins University Bloomberg School of Public Health, Baltimore MD, USA.,College of Life and Environmental Sciences, University of Exeter, Stocker Road, Exeter EX4 4QD, UK.,Medical Research Council Centre for Medical Mycology, Institute of Medical Sciences, University of Aberdeen, Ashgrove Road West, Aberdeen AB252ZD, UK
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Coelho C, Brown L, Maryam M, Vij R, Smith DFQ, Burnet MC, Kyle JE, Heyman HM, Ramirez J, Prados-Rosales R, Lauvau G, Nakayasu ES, Brady NR, Hamacher-Brady A, Coppens I, Casadevall A. Listeria monocytogenes virulence factors, including listeriolysin O, are secreted in biologically active extracellular vesicles. J Biol Chem 2019; 294:1202-1217. [PMID: 30504226 PMCID: PMC6349127 DOI: 10.1074/jbc.ra118.006472] [Citation(s) in RCA: 91] [Impact Index Per Article: 18.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Revised: 11/28/2018] [Indexed: 01/25/2023] Open
Abstract
Outer membrane vesicles produced by Gram-negative bacteria have been studied for half a century but the possibility that Gram-positive bacteria secrete extracellular vesicles (EVs) was not pursued until recently due to the assumption that the thick peptidoglycan cell wall would prevent their release to the environment. However, following their discovery in fungi, which also have cell walls, EVs have now been described for a variety of Gram-positive bacteria. EVs purified from Gram-positive bacteria are implicated in virulence, toxin release, and transference to host cells, eliciting immune responses, and spread of antibiotic resistance. Listeria monocytogenes is a Gram-positive bacterium that causes listeriosis. Here we report that L. monocytogenes produces EVs with diameters ranging from 20 to 200 nm, containing the pore-forming toxin listeriolysin O (LLO) and phosphatidylinositol-specific phospholipase C (PI-PLC). Cell-free EV preparations were toxic to mammalian cells, the murine macrophage cell line J774.16, in a LLO-dependent manner, evidencing EV biological activity. The deletion of plcA increased EV toxicity, suggesting PI-PLC reduced LLO activity. Using simultaneous metabolite, protein, and lipid extraction (MPLEx) multiomics we characterized protein, lipid, and metabolite composition of bacterial cells and secreted EVs and found that EVs carry the majority of listerial virulence proteins. Using immunogold EM we detected LLO at several organelles within infected human epithelial cells and with high-resolution fluorescence imaging we show that dynamic lipid structures are released from L. monocytogenes during infection. Our findings demonstrate that L. monocytogenes uses EVs for toxin release and implicate these structures in mammalian cytotoxicity.
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Affiliation(s)
- Carolina Coelho
- From the W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins University Bloomberg School of Public Health, Baltimore, Maryland 21205, , To whom correspondence may be addressed:
Hopkins Bloomberg School of Public Health, 615 North Wolfe St., Baltimore, MD 21205. E-mail:
| | - Lisa Brown
- the Department of Microbiology and Immunology and
| | - Maria Maryam
- From the W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins University Bloomberg School of Public Health, Baltimore, Maryland 21205
| | - Raghav Vij
- From the W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins University Bloomberg School of Public Health, Baltimore, Maryland 21205
| | - Daniel F. Q. Smith
- From the W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins University Bloomberg School of Public Health, Baltimore, Maryland 21205
| | - Meagan C. Burnet
- the Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, and
| | - Jennifer E. Kyle
- the Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, and
| | - Heino M. Heyman
- the Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, and
| | - Jasmine Ramirez
- From the W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins University Bloomberg School of Public Health, Baltimore, Maryland 21205
| | | | - Gregoire Lauvau
- the Department of Microbiology and Immunology and ,Division of Infectious Diseases of the Department of Medicine, Albert Einstein College of Medicine of Yeshiva University, Bronx, New York 10461
| | - Ernesto S. Nakayasu
- the Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, and
| | - Nathan R. Brady
- From the W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins University Bloomberg School of Public Health, Baltimore, Maryland 21205
| | - Anne Hamacher-Brady
- From the W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins University Bloomberg School of Public Health, Baltimore, Maryland 21205
| | - Isabelle Coppens
- From the W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins University Bloomberg School of Public Health, Baltimore, Maryland 21205
| | - Arturo Casadevall
- From the W. Harry Feinstone Department of Molecular Microbiology and Immunology, Johns Hopkins University Bloomberg School of Public Health, Baltimore, Maryland 21205, ,the Department of Microbiology and Immunology and ,Division of Infectious Diseases of the Department of Medicine, Albert Einstein College of Medicine of Yeshiva University, Bronx, New York 10461, , Supported by National Institutes of Health Grants 5R01HL059842, 5R01AI033774, 5R37AI033142, and 5R01AI052733. To whom correspondence may be addressed:
Johns Hopkins Bloomberg School of Public Health, 615 North Wolfe St., Baltimore, MD 21205. E-mail:
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Maryam M, Idrees M. Study of promoter hypomethylation profiles ofRASoncogenes in hepatocellular carcinoma derived from hepatitis C virus genotype 3a in Pakistani population. J Med Virol 2018; 90:1516-1523. [DOI: 10.1002/jmv.25221] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2017] [Accepted: 05/03/2018] [Indexed: 02/06/2023]
Affiliation(s)
- Maria Maryam
- National Centre of Excellence in Molecular Biology; University of the Punjab; Lahore Pakistan
| | - Muhammad Idrees
- National Centre of Excellence in Molecular Biology; University of the Punjab; Lahore Pakistan
- Vice Chancellor Office, Hazara University; Mansehra Pakistan
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