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Kamat V, Grumbine MK, Bao K, Mokate K, Khalil G, Cook D, Clearwater B, Hirst R, Harman J, Boeck M, Fu Z, Smith LEH, Goswami M, Wubben TJ, Walker EM, Zhu J, Soleimanpour SA, Scarlett JM, Robbings BM, Hass D, Hurley JB, Sweet IR. A versatile pumpless multi-channel fluidics system for maintenance and real-time functional assessment of tissue and cells. Cell Rep Methods 2023; 3:100642. [PMID: 37963464 PMCID: PMC10694526 DOI: 10.1016/j.crmeth.2023.100642] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Revised: 07/24/2023] [Accepted: 10/20/2023] [Indexed: 11/16/2023]
Abstract
To address the needs of the life sciences community and the pharmaceutical industry in pre-clinical drug development to both maintain and continuously assess tissue metabolism and function with simple and rapid systems, we improved on the initial BaroFuse to develop it into a fully functional, pumpless, scalable multi-channel fluidics instrument that continuously measures changes in oxygen consumption and other endpoints in response to test compounds. We and several other laboratories assessed it with a wide range of tissue types including retina, pancreatic islets, liver, and hypothalamus with both aqueous and gaseous test compounds. The setup time was less than an hour for all collaborating groups, and there was close agreement between data obtained from the different laboratories. This easy-to-use system reliably generates real-time metabolic and functional data from tissue and cells in response to test compounds that will address a critical need in basic and applied research.
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Affiliation(s)
- Varun Kamat
- University of Washington Medicine Diabetes Institute, University of Washington, Seattle, WA 98109, USA
| | | | - Khang Bao
- EnTox Sciences, Inc., Mercer Island, WA 98040, USA
| | - Kedar Mokate
- University of Washington Medicine Diabetes Institute, University of Washington, Seattle, WA 98109, USA
| | - Gamal Khalil
- EnTox Sciences, Inc., Mercer Island, WA 98040, USA
| | - Daniel Cook
- EnTox Sciences, Inc., Mercer Island, WA 98040, USA
| | | | - Richard Hirst
- Technical Assembly Service Corporation, Seattle, WA 98109, USA
| | - Jarrod Harman
- Department of Ophthalmology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA
| | - Myriam Boeck
- Department of Ophthalmology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA; Eye Center, Medical Center, Faculty of Medicine, University of Freiburg, Freiburg im Breisgau, Germany
| | - Zhongjie Fu
- Department of Ophthalmology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA
| | - Lois E H Smith
- Department of Ophthalmology, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115, USA
| | - Moloy Goswami
- Department of Ophthalmology and Visual Sciences, University of Michigan, Ann Arbor, MI 48105, USA
| | - Thomas J Wubben
- Department of Ophthalmology and Visual Sciences, University of Michigan, Ann Arbor, MI 48105, USA
| | - Emily M Walker
- Department of Internal Medicine, University of Michigan, Ann Arbor, MI 98195, USA
| | - Jie Zhu
- Department of Internal Medicine, University of Michigan, Ann Arbor, MI 98195, USA
| | - Scott A Soleimanpour
- Department of Internal Medicine, University of Michigan, Ann Arbor, MI 98195, USA
| | - Jarrad M Scarlett
- University of Washington Medicine Diabetes Institute, University of Washington, Seattle, WA 98109, USA; Department of Pediatric Gastroenterology and Hepatology, Seattle Children's Hospital, Seattle, WA 98145, USA
| | - Brian M Robbings
- University of Washington Medicine Diabetes Institute, University of Washington, Seattle, WA 98109, USA; Department of Biochemistry, University of Washington, Seattle, WA 98109, USA
| | - Daniel Hass
- Department of Biochemistry, University of Washington, Seattle, WA 98109, USA
| | - James B Hurley
- Department of Biochemistry, University of Washington, Seattle, WA 98109, USA
| | - Ian R Sweet
- University of Washington Medicine Diabetes Institute, University of Washington, Seattle, WA 98109, USA; EnTox Sciences, Inc., Mercer Island, WA 98040, USA.
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Grumbine MK, Kamat V, Bao K, Crupi T, Mokate K, Lim R, Chao JR, Robbings BM, Hass DT, Hurley JB, Sweet IR. Maintaining and Assessing Various Tissue and Cell Types of the Eye Using a Novel Pumpless Fluidics System. J Vis Exp 2023:10.3791/65399. [PMID: 37522735 PMCID: PMC10791547 DOI: 10.3791/65399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/01/2023] Open
Abstract
Many in vitro models used to investigate tissue function and cell biology require a flow of media to provide adequate oxygenation and optimal cell conditions required for the maintenance of function and viability. Toward this end, we have developed a multi-channel flow culture system to maintain tissue and cells in culture and continuously assess function and viability by either in-line sensors and/or collection of outflow fractions. The system combines 8-channel, continuous optical sensing of oxygen consumption rate with a built-in fraction collector to simultaneously measure production rates of metabolites and hormone secretion. Although it is able to maintain and assess a wide range of tissue and cell models, including islets, muscle, and hypothalamus, here we describe its operating principles and the experimental preparations/protocols that we have used to investigate bioenergetic regulation of isolated mouse retina, mouse retinal pigment epithelium (RPE)-choroid-sclera, and cultured human RPE cells. Innovations in the design of the system, such as pumpless fluid flow, have produced a greatly simplified operation of a multi-channel flow system. Videos and images are shown that illustrate how to assemble, prepare the instrument for an experiment, and load the different tissue/cell models into the perifusion chambers. In addition, guidelines for selecting conditions for protocol- and tissue-specific experiments are delineated and discussed, including setting the correct flow rate to tissue ratio to obtain consistent and stable culture conditions and accurate determinations of consumption and production rates. The combination of optimal tissue maintenance and real-time assessment of multiple parameters yields highly informative data sets that will have great utility for research in the physiology of the eye and drug discovery for the treatment of impaired vision.
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Affiliation(s)
| | - Varun Kamat
- UW Medicine Diabetes Institute, University of Washington
| | | | | | - Kedar Mokate
- UW Medicine Diabetes Institute, University of Washington
| | - Rayne Lim
- Department of Ophthalmology, University of Washington
| | | | | | - Daniel T Hass
- Department of Biochemistry, University of Washington
| | | | - Ian R Sweet
- EnTox Sciences, Inc; UW Medicine Diabetes Institute, University of Washington;
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