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Sarkar A, Mukundan N, Sowndarya S, Dubey VK, Babu R, Lakshmanan V, Rangiah K, Panicker MM, Palakodeti D, Subramanian SP, Subramanian R. Serotonin is essential for eye regeneration in planaria Schmidtea mediterranea. FEBS Lett 2019; 593:3198-3209. [PMID: 31529697 DOI: 10.1002/1873-3468.13607] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2019] [Revised: 08/23/2019] [Accepted: 09/06/2019] [Indexed: 12/31/2022]
Abstract
Planaria is an ideal system to study factors involved in regeneration and tissue homeostasis. Little is known about the role of metabolites and small molecules in stem cell maintenance and lineage specification in planarians. Using liquid chromatography and mass spectrometry (LC-MS)-based quantitative metabolomics, we determined the relative levels of metabolites in stem cells, progenitors, and differentiated cells of the planarian Schmidtea mediterranea. Tryptophan and its metabolic product serotonin are significantly enriched in stem cells and progenitor population. Serotonin biosynthesis in these cells is brought about by a noncanonical enzyme, phenylalanine hydroxylase. Knockdown of Smed-pah leads to complete disappearance of eyes in regenerating planaria, while exogenous supply of serotonin and its precursor rescues the eyeless phenotype. Our results demonstrate a key role for serotonin in eye regeneration.
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Affiliation(s)
- Arunabha Sarkar
- National Centre for Biological Sciences (NCBS), Bangalore, Karnataka, India
| | - Namita Mukundan
- Institute for Stem Cell Science and Regenerative Medicine (InStem), Bangalore, Karnataka, India.,Manipal Academy of Higher Education (MAHE), Manipal, Karnataka, India
| | - Sai Sowndarya
- Institute for Stem Cell Science and Regenerative Medicine (InStem), Bangalore, Karnataka, India
| | - Vinay Kumar Dubey
- Institute for Stem Cell Science and Regenerative Medicine (InStem), Bangalore, Karnataka, India.,Manipal Academy of Higher Education (MAHE), Manipal, Karnataka, India
| | - Rosana Babu
- Institute for Stem Cell Science and Regenerative Medicine (InStem), Bangalore, Karnataka, India
| | - Vairavan Lakshmanan
- Institute for Stem Cell Science and Regenerative Medicine (InStem), Bangalore, Karnataka, India
| | - Kannan Rangiah
- Central Food Technology Research Institute, Mysore, Karnataka, India
| | | | - Dasaradhi Palakodeti
- Institute for Stem Cell Science and Regenerative Medicine (InStem), Bangalore, Karnataka, India
| | | | - Ramaswamy Subramanian
- Institute for Stem Cell Science and Regenerative Medicine (InStem), Bangalore, Karnataka, India
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Gupte TM, Haque F, Gangadharan B, Sunitha MS, Mukherjee S, Anandhan S, Rani DS, Mukundan N, Jambekar A, Thangaraj K, Sowdhamini R, Sommese RF, Nag S, Spudich JA, Mercer JA. Mechanistic heterogeneity in contractile properties of α-tropomyosin (TPM1) mutants associated with inherited cardiomyopathies. J Biol Chem 2014; 290:7003-15. [PMID: 25548289 DOI: 10.1074/jbc.m114.596676] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022] Open
Abstract
The most frequent known causes of primary cardiomyopathies are mutations in the genes encoding sarcomeric proteins. Among those are 30 single-residue mutations in TPM1, the gene encoding α-tropomyosin. We examined seven mutant tropomyosins, E62Q, D84N, I172T, L185R, S215L, D230N, and M281T, that were chosen based on their clinical severity and locations along the molecule. The goal of our study was to determine how the biochemical characteristics of each of these mutant proteins are altered, which in turn could provide a structural rationale for treatment of the cardiomyopathies they produce. Measurements of Ca(2+) sensitivity of human β-cardiac myosin ATPase activity are consistent with the hypothesis that hypertrophic cardiomyopathies are hypersensitive to Ca(2+) activation, and dilated cardiomyopathies are hyposensitive. We also report correlations between ATPase activity at maximum Ca(2+) concentrations and conformational changes in TnC measured using a fluorescent probe, which provide evidence that different substitutions perturb the structure of the regulatory complex in different ways. Moreover, we observed changes in protein stability and protein-protein interactions in these mutants. Our results suggest multiple mechanistic pathways to hypertrophic and dilated cardiomyopathies. Finally, we examined a computationally designed mutant, E181K, that is hypersensitive, confirming predictions derived from in silico structural analysis.
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Affiliation(s)
- Tejas M Gupte
- From the Institute for Stem Cell Biology and Regenerative Medicine, Bangalore 560065, India
| | - Farah Haque
- From the Institute for Stem Cell Biology and Regenerative Medicine, Bangalore 560065, India, the National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore 560065, India
| | - Binnu Gangadharan
- From the Institute for Stem Cell Biology and Regenerative Medicine, Bangalore 560065, India, the Manipal University, Madhav Nagar, Manipal 576104, India
| | - Margaret S Sunitha
- From the Institute for Stem Cell Biology and Regenerative Medicine, Bangalore 560065, India, the National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore 560065, India
| | - Souhrid Mukherjee
- From the Institute for Stem Cell Biology and Regenerative Medicine, Bangalore 560065, India
| | - Swetha Anandhan
- From the Institute for Stem Cell Biology and Regenerative Medicine, Bangalore 560065, India
| | - Deepa Selvi Rani
- the Council for Scientific and Industrial Research-Centre for Cellular and Molecular Biology, Hyderabad 500007, India
| | - Namita Mukundan
- the National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore 560065, India
| | - Amruta Jambekar
- From the Institute for Stem Cell Biology and Regenerative Medicine, Bangalore 560065, India
| | - Kumarasamy Thangaraj
- the Council for Scientific and Industrial Research-Centre for Cellular and Molecular Biology, Hyderabad 500007, India
| | - Ramanathan Sowdhamini
- the National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bangalore 560065, India
| | - Ruth F Sommese
- the Department of Biochemistry, Stanford University School of Medicine, Stanford, California 94305, and
| | - Suman Nag
- the Department of Biochemistry, Stanford University School of Medicine, Stanford, California 94305, and
| | - James A Spudich
- From the Institute for Stem Cell Biology and Regenerative Medicine, Bangalore 560065, India, the Department of Biochemistry, Stanford University School of Medicine, Stanford, California 94305, and
| | - John A Mercer
- From the Institute for Stem Cell Biology and Regenerative Medicine, Bangalore 560065, India, the McLaughlin Research Institute, Great Falls, Montana 59405
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Varghese SJ, Unni MK, Mukundan N, Rai R. Platelet Functions in Cardiopulmonary Bypass Surgery. Med J Armed Forces India 2011; 61:316-21. [PMID: 27407796 DOI: 10.1016/s0377-1237(05)80053-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2003] [Accepted: 05/24/2004] [Indexed: 10/18/2022] Open
Abstract
BACKGROUND Haemorrhage after Cardio Pulmonary Bypass (CPB) Surgery is a well recognised complication that leads to significant morbidity and mortality. The incidence varies between 5-25% depending upon the clinical situation. Several factors are implicated as causative but none have been precisely proved. METHODS Our study was an attempt to evaluate the haemostatic defect with particular reference to platelet function abnormalities during cardio pulmonary bypass surgery, in order to reduce the morbidity and mortality associated with post CPB haemorrhage. Flow cytometric evaluation of different platelet glycoproteins like GPIb/IX, GPIIb/IIIa and GMP-140 was done. RESULTS The marker expression showed deregulation during surgery which returned to base after bypass was terminated. In contrast, the cases with bleeding showed significant variation. P-Selectin (GMP 140) expression decreased progressively till 3(rd) post-operative day showing lack of activation of platelets in cases of severe bleeding. CONCLUSION Longer duration of CPB initiates plasmin generation through heparin, which raises the PAI-1-tPA complex and thereby down regulating the functions of platelets. This suggests a link between duration of CPB, bleeding, platelet dysfunction and fibrinolysis. Hence serial estimations of the levels of GMP-140 and tPA can predict severe bleeding.
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Affiliation(s)
- S J Varghese
- Ex-Associate Professor, Department of Pathology, Armed Forces Medical College, Pune
| | - M K Unni
- Senior Advisor(CT Surgery), Military Hospital (Cardio Thoracic Centre) Pune
| | - N Mukundan
- Ex-Classified Specialist (Anaesthesiology) Military Hospital (Cardio Thoracic Centre) Pune
| | - Ramji Rai
- Director General Medical Services(Army), Army Headquarters, New Delhi
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