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Gulmez O, Aksakal O, Baris O, Bayram E. Pseudomonas stutzeri improves the tolerance of Lemna minor to Cu(OH) 2 nanopesticide by regulating the uptake of copper, antioxidant defense mechanisms, and the expression of metacaspase-1, chlorophyllase, and stress-responsive genes. Plant Physiol Biochem 2023; 203:108002. [PMID: 37699291 DOI: 10.1016/j.plaphy.2023.108002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Revised: 07/28/2023] [Accepted: 09/04/2023] [Indexed: 09/14/2023]
Abstract
This study investigated the effect of Pseudomonas stutzeri inoculation on Lemna minor treated with Cu(OH)2 nanopesticide (NP). The results showed that P. stutzeri inoculation increased the relative growth rate (RGR) in NP-treated plants. Although chlorophyll and carotenoid contents decreased significantly in NP-treated plants, P. stutzeri inoculation led to an increase in chlorophyll and carotenoid contents in NP-treated plants. Copper (Cu) content increased with increasing NP concentration, but it decreased significantly in the presence of P. stutzeri. NP treatment caused increased H2O2 and TBARS levels, as well as proline levels. However, P. stutzeri inoculation led to decreased H2O2 and TBARS levels and increased SOD, POX, GST, GR, GPX, and DHAR activities. The expression of genes encoding SOD, GST, metacaspase-1, and chlorophyllase was upregulated by NP treatment alone. Additionally, when plants were inoculated with P. stutzeri, the expression of these genes was further enhanced. In conclusion, P. stutzeri inoculation had a positive effect on the growth and antioxidant system of L. minor treated with NP as it enhanced RGR, increased chlorophyll and carotenoid contents, and decreased Cu content and oxidative stress. These findings suggested that P. stutzeri has the potential to promote aquatic plant growth and counteract the negative impacts of NP on these plants.
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Affiliation(s)
- Ozlem Gulmez
- Department of Biology, Science Faculty, Atatürk University, 25240, Erzurum, Turkey
| | - Ozkan Aksakal
- Department of Biology, Science Faculty, Atatürk University, 25240, Erzurum, Turkey.
| | - Ozlem Baris
- Department of Nanoscience and Nanoengineering, Institute of Naturel and Applied Sciences, Atatürk University, 25240, Erzurum, Turkey
| | - Emrah Bayram
- Department of Criminalistics, Applied and Natural Sciences, Atatürk University, 25240, Erzurum, Turkey
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Gulmez O, Tiryaki D, Atici O, Baris O. Boron-resistant Alternaria alternata (OG14) mitigates boron stress by improving physiological and antioxidative response in wheat (Triticum aestivum L.). Plant Physiol Biochem 2023; 202:107911. [PMID: 37603970 DOI: 10.1016/j.plaphy.2023.107911] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Revised: 07/06/2023] [Accepted: 07/24/2023] [Indexed: 08/23/2023]
Abstract
Effect of Alternaria alternata (OG14) isolated from a rock lichen (Xanthoria sp.) was investigated on the relief of boron stress in wheat. To determine the tolerance level to B stress, the fungus was grown at increasing boric acid (BA) concentrations in the range of 0.0-2.5 M. No significant change in colony development of the fungus was observed up to 1 M BA application compared to the control but after this dose, it decreased depending on the increase in the BA dose. When the element content of wheat seedlings was evaluated by ICP-MS, BA application increased B content together with Mg, P, K, Fe contents of the seedlings to very high levels compared to the control. However, fungus + BA treatments decreased the content of B and the other elements in the seedlings. The BA applications resulted in an increase in the levels of reactive oxygen species, including H2O2 and O2.-as well as lipid peroxidation in the seedlings. However, when the fungal inoculation was performed under the same BA conditions, the levels of these parameters decreased. The fungus inoculation stimulated the activity of all studied enzymes compared to BA applications. BA applications alone increased non - enyzmatic the oxidized ascorbate level more than the reducing ascorbate, leading to a decrease in the AsA/DHA ratio. The results show that A. alternata treatment can mitigate the negative effects of B stress on wheat seedlings by reducing ROS, LPO, B content, increasing the capacity of enzymatic and non-enzymatic antioxidants, and improving root and shoot length.
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Affiliation(s)
- Ozlem Gulmez
- Department of Biology, Faculty of Science, Ataturk University, 25240, Erzurum, Turkey.
| | - Deniz Tiryaki
- Department of Biology, Faculty of Science, Ataturk University, 25240, Erzurum, Turkey
| | - Okkes Atici
- Department of Biology, Faculty of Science, Ataturk University, 25240, Erzurum, Turkey
| | - Ozlem Baris
- Department of Biology, Faculty of Science, Ataturk University, 25240, Erzurum, Turkey
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Mehmet Bektas, Orhan F, Baris O. Isolation of Biological Control Agents and Biotechnological Bacteria from Aquatic Insect Gut Microbiota (Coleoptera: Helophoridae, Hydrophilidae). BIOL BULL+ 2022. [DOI: 10.1134/s1062359022060036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Karacam K, Demir T, Baris O. Identification of Dominant Bacteria Isolated From Periodontal Abscesses. Journal of Advanced Oral Research 2021. [DOI: 10.1177/23202068211050772] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Aim: Various methods investigating the bacterial content causing periodontal abscesses have been applied in studies conducted until today. However, these studies have focused on periodontopathogens. Our study was carried out to research whether different pathogens other than the known periodontopathogens are present in periodontal abscess formation. Therefore, dominant bacterial samples obtained from the periodontal abscess content using the culture-dependent method were identified by 16S rDNA sequencing. Materials and Methods: Samples were obtained using a syringe or a periopaper from periodontal abscesses of 20 volunteers who met the research criteria. The three different bacterial colonies that were observed most intensely in each sample were selected and purified, and the isolates obtained were kept until the next characterization. Genomic DNA was isolated from each isolate; 16S rRNA genes were amplified by polymerase chain reaction and identified using DNA sequencing analyses. Results: As a result of culture-dependent methods, bacterial species belonging to Streptococcus, Staphylococcus, Neisseria, Actinomyces, Morococcus, Moraxella, and Enterococcus genera were isolated from a total of 60 bacterial isolates, three of which were the most densely growing colonies from each periodontal abscess sample. Conclusion: In our study, most of the bacterial species detected were identified for the first time in the bacterial content of periodontal abscesses. In some previously done studies, most of these bacteria species were shown to cause abscesses in different parts of the body. It was concluded that further studies are needed to determine the number and proportion of these bacteria species in total bacterial content to evaluate whether they cause periodontal abscesses.
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Affiliation(s)
- Kubra Karacam
- Department of Periodontology, Faculty of Dentistry, Atatürk University, Erzurum, Turkey
| | - Turgut Demir
- Department of Periodontology, Faculty of Dentistry, Atatürk University, Erzurum, Turkey
| | - Ozlem Baris
- Department of Biology, Faculty of Science, Atatürk University, Erzurum, Turkey
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Abstract
AIM Although it is known that bacterial mechanisms are involved in dental calculus formation, which is a predisposing factor in periodontal diseases, there have been few studies of such associations, and therefore, information available is limited. The purpose of this study was to isolate and identify aerobic bacteria responsible for direct calcification from supragingival calculus samples. MATERIALS AND METHODS The study was conducted using supragingival calculus samples from patients with periodontal disease, which was required as part of conventional treatment. Isolations were performed by sampling the supragingival calculus with buffer and inoculating the samples on media on which crystallization could be observed. The 16S recombinant DNA of the obtained pure cultures was then amplified and sequenced. RESULTS A few bacterial species that have not previously been associated with mineralization or identified on bacterial plaque or calculus were detected. The bacteria that caused mineralization an aerobic environment are identified as Neisseria flava, Aggregatibacter segnis, Streptococcus tigurinus, and Morococcus cerebrosus. CONCLUSION These findings proved that bacteria potentially play a role in the etiopathology of supragingival calculus. The association between the effects of the identified bacteria on periodontal diseases and calculus formation requires further studies.
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Affiliation(s)
- O Baris
- Department of Biology, Faculty of Science, Atatürk University, Erzurum, Turkey
| | - T Demir
- Department of Periodontology, Faculty of Dentistry, Atatürk University, Erzurum, Turkey
| | - M Gulluce
- Department of Biology, Faculty of Science, Atatürk University, Erzurum, Turkey
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Ozkan H, Yanmis D, Karadayi M, Bal T, Baris O, Gulluce M. Determination of genotoxic and antigenotoxic properties of essential oil from Ferula orientalis L. using Ames/Salmonella and E. coli WP2 bacterial test systems. Toxicol Ind Health 2012; 30:714-23. [PMID: 23064766 DOI: 10.1177/0748233712462479] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
The essential oils having many application fields such as medicine, flavoring, cosmetics are natural products obtained from aromatic plants. As the natural products of Ferula species have a wide range of use in folk medicine, this study was planned to evaluate the mutagenic and antimutagenic activities of essential oils of leaves and flowers of Ferula orientalis grown in Erzurum, through the bacterial reverse mutation assay. Furthermore, the chemical compositions of essential oils isolated by the hyrodistillation method were analysed by gas chromatography (GC) and gas chromatography-mass spectroscopy (GC-MS), as their biological activities were connected to their contents. According to our results, any tested essential oil at any used concentration on Salmonella typhimurium TA1535 and TA1537 strains and in Escherichia coli WP2 uvrA strain showed no mutagenic activity. However, the tested materials at different concentrations showed antimutagenic activities against the used mutagens. The inhibition rates ranged against sodium azide (NaN3) on S. typhimurium TA1535 from 29% to 36%, against 9-aminoacridine (9-AA) on S. typhimurium TA1537 from 40% to 68% and against N-methyl-N'-nitro-N-nitrosoguanidine (MNNG) on E. coli WP2 uvrA from 23% to 52%, respectively. Also, it is revealed by GC and GC/MS analysis of the essential oils isolated from the leaves and flowers, respectively. The major compounds in these oils were determined as α-cadinol, δ-cadinene and germacrene D-4-ol. The results of this study indicate that as the essential oils of F. orientalis have many constituents, they show no mutagenic activity but significant antimutagenic activity, and these materials can be safely used in medicinal applications after further investigations.
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Affiliation(s)
- Hakan Ozkan
- Department of Biology, Erzincan University, Erzincan, Turkey
| | - Derya Yanmis
- Department of Biology, Ataturk University, Erzurum, Turkey
| | | | - Tugba Bal
- Department of Biology, Ataturk University, Erzurum, Turkey
| | - Ozlem Baris
- Department of Biology, Ataturk University, Erzurum, Turkey
| | - Medine Gulluce
- Department of Biology, Ataturk University, Erzurum, Turkey
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Baris O, Karadayi M, Yanmis D, Guvenalp Z, Bal T, Gulluce M. Isolation of 3 Flavonoids from Mentha longifolia (L.) Hudson subsp. longifolia and Determination of Their Genotoxic Potentials by Using the E. coli WP2 Test System. J Food Sci 2011; 76:T212-7. [DOI: 10.1111/j.1750-3841.2011.02405.x] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Turan M, Gulluce M, Karadayi M, Baris O, Sahin F. Role of soil enzymes produced by PGPR strains in wheat growth and nutrient uptake parameters in the filed conditions. Curr Opin Biotechnol 2011. [DOI: 10.1016/j.copbio.2011.05.434] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Gulluce M, Agar G, Baris O, Karadayi M, Orhan F, Sahin F. Mutagenic and antimutagenic effects of hexane extract of some Astragalus species grown in the eastern Anatolia region of Turkey. Phytother Res 2010; 24:1014-8. [PMID: 19957249 DOI: 10.1002/ptr.3059] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Medical plants and their various extracts have been occasionally used in the treatment of many diseases. Astragalus is one of those medical plants and it has several biological activities. In the present study, the hexane extracts of six Astragalus species, which are grown in the eastern Anatolia region of Turkey, were isolated, and their mutagenic and antimutagenic properties were investigated by using Salmonella typhimurium TA1535, TA1537 and Escherichia coli WP2uvrA tester strains at 0.05, 0.5 and 5 microg/plate concentrations. Known mutagens sodium azide (NaN(3)), 9-Aminoacridine (9-AA) and N-Methyl-N'-nitro-N-nitrosoguanidine (MNNG) were used to determine antimutagenic properties of hexane extracts. The results showed that all hexane extracts, investigated in the present study, can be considered genotoxically safe because they do not have mutagenic activity at the tested concentrations. But, a great many of them have antimutagenic activity against 9-Aminoacridine known as a model intercalator agent. The inhibition rates obtained from the antimutagenicity assays ranged from 27.51% (A. macrocephalus--0.05 microg/plate) to 54.39% (A. galegiformis--5 microg/plate). These activities are valuable toward an extension of the employ of these drugs as new phytotherapeutic or preservative ingredients.
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Affiliation(s)
- Medine Gulluce
- Department of Biology, Science Faculty, Atatürk University, 25240 Erzurum, Turkey
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Adiguzel A, Ozer H, Sokmen M, Gulluce M, Sokmen A, Kilic H, Sahin F, Baris O. Antimicrobial and antioxidant activity of the essential oil and methanol extract of Nepeta cataria. Pol J Microbiol 2009; 58:69-76. [PMID: 19469289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/27/2023] Open
Abstract
Catnip (Nepeta cataria) is an important medicinal herb belonging to the mint family, Lamiaceae. In this study, the in vitro antimicrobial and antioxidant activities of the essential oil and methanol extract from Nepeta cataria, and its essential oil composition were investigated. The essential oil, which has 4aalpha,7alpha,7abeta-nepetalactone (70.4%), 4aalpha,7alpha,7abeta-nepetalactone (6.0%), thymol (2.3%), and 4aalpha,7alpha, 7abeta3-nepetalactone (2.5%), as main components, exhibited activity against eleven bacteria, and twelve fungi and a yeast, C. albicans; with Minimum Inhibitory Concentrations (MIC) values ranging from 12.50 to 250 microl/ml; the methanol extract showed weaker activity. The samples were also subjected to a screening for their possible antioxidant activities by using 2.2-diphenyl-1-picrylhydrazyl (DPPH) and beta-carotene/linoleic acid assays. In DPPH assay, the extract showed slight antioxidant activity whereas the essential oil remained inactive. In the latter case, both the extract and the essential oil exerted weak activity having inhibiton ratios of linoleic acid oxidation at 16.4% and 27.0%, respectively. The weak antioxidative nature of the extract could be attributed to the low phenolic content, estimated as gallic acid equivalent at 22.6 +/- 2.07 microg/ml or 2.26%. In both systems, antioxidant capacity of BHT was determined in parallel experiments.
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Affiliation(s)
- Ahmet Adiguzel
- Health Services Vocational Training School, Ataturk University, Yenisehir-Erzurum, 25070, Turkey
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Ozer H, Sökmen M, Güllüce M, Adigüzel A, Sahin F, Sökmen A, Kiliç H, Baris O. Chemical composition and antimicrobial and antioxidant activities of the essential oil and methanol extract of Hippomarathrum microcarpum (Bieb.) from Turkey. J Agric Food Chem 2007; 55:937-42. [PMID: 17263496 DOI: 10.1021/jf0624244] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Hippomarathrum microcarpum grows wild in eastern Anatolia, Turkey, and is a plant utilized as food by people. In this study, the in vitro antimicrobial and antioxidant activities of the essential oil and methanol extract from H. microcarpum and its essential oil composition were investigated. The essential oil, which has bornyl acetate, caryophyllene oxide, and beta-caryophyllene as its main components, exhibited activity against eight bacteria, nine fungi, and a yeast, Candida albicans, with minimum inhibitory concentration values ranging from 62.50 to 125 muL/mL; the methanol extract showed weak activity. The antioxidant activity of these extracts was assessed by the beta-carotene bleaching test and the 1,1'-diphenyl-2-picrylhydrazyl (DPPH) radical scavenging test. The inhibition of linoleic acid oxidation was very weak for both extracts tested. The inhibition percentages were found to be 22.9 and 33.5% for methanol and essential oil, respectively, at the concentration of 2 g/L. The oil scavenged DPPH at higher concentrations (IC50 = 10.69 +/- 0.05 mg/mL), but the methanol extract exhibited no activity. The total phenolic content of the methanol extract was found to be 4.7 +/- 0.1%.
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Affiliation(s)
- Hakan Ozer
- Department of Field Crops, Faculty of Agriculture, and Biotechnology Application and Research Center, Ataturk University, Erzurum 25240, Turkey.
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Adiguzel A, Agar G, Baris O, Gulluce M, Sahin F, Sengul M. RAPD and FAME analyses of Astragalus species growing in eastern Anatolia region of Turkey. BIOCHEM SYST ECOL 2006. [DOI: 10.1016/j.bse.2005.10.014] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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