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Tse P, Shafer J, Bryan SA, Nelson GL, Lines AM. Measuring Nd(III) Solution Concentration in the Presence of Interfering Er(III) and Cu(II) Ions: A Partial Least Squares Analysis of Ultraviolet-Visible Spectra. Appl Spectrosc 2022; 76:173-183. [PMID: 34643131 DOI: 10.1177/00037028211053852] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Optical spectroscopy is a powerful characterization tool with applications ranging from fundamental studies to real-time process monitoring. However, it can be difficult to apply to complex samples that contain interfering analytes which are common in processing streams. Multivariate (chemometric) analysis has been examined for providing selectivity and accuracy to the analysis of optical spectra and expanding its potential applications. Here we will discuss chemometric modeling with an in-depth comparison to more simplistic analysis approaches and outline how chemometric modeling works while exploring the limits on modeling accuracy. Understanding the limitations of the chemometric model can provide better analytical assessment regarding the accuracy and precision of the analytical result. This will be explored in the context of UV-Vis absorbance of neodymium (Nd3+) in the presence of interferents, erbium (Er3+) and copper (Cu2+) under conditions simulating the liquid-liquid extraction approach used to recycle plutonium (Pu) and uranium (U) in used nuclear fuel worldwide. The selected chemometric model, partial least squares regression, accurately quantifies Nd3+ with a low percentage error in the presence of interfering analytes and even under conditions that the training set does not describe.
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Affiliation(s)
- Poki Tse
- Pacific Northwest National Laboratory, Richland, WA 99352, USA
- Department of Chemistry, Colorado School of Mines, Golden, CO 80401, USA
| | - Jenifer Shafer
- Pacific Northwest National Laboratory, Richland, WA 99352, USA
| | - Samuel A Bryan
- Pacific Northwest National Laboratory, Richland, WA 99352, USA
| | - Gilbert L Nelson
- Department of Chemistry, The College of Idaho, Caldwell, ID 83605, USA
| | - Amanda M Lines
- Pacific Northwest National Laboratory, Richland, WA 99352, USA
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Tse P, Shafer J, Bryan SA, Lines AM. Quantification of Raman-Interfering Polyoxoanions for Process Analysis: Comparison of Different Chemometric Models and a Demonstration on Real Hanford Waste. Environ Sci Technol 2021; 55:12943-12950. [PMID: 34529406 DOI: 10.1021/acs.est.1c02512] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
The Hanford site represents a complicated environmental remediation challenge, remaining from the production of nuclear weapons. Over 100 million gallons of liquid radioactive waste of unknown composition will be chemically processed and vitrified, but the varying chemical composition and highly radioactive nature of the waste preclude the implementation of more developed, offline technologies to determine the composition. The only practical approach to waste treatment will require the significant utilization of real-time, chemometric modeling approaches. Although chemometric approaches have been applied to the analysis of Hanford waste, the models developed were highly tank-specialized, and limited discussion was provided on how models fared with interfering signals. As the tank waste is largely composed of oxoanions, which tend to have interfering Raman spectra, the general question was posed as to what chemometric approach is best suited to accurately quantify analytes in the presence of interfering signals. This was carried out by examining the ability of classical least square (CLS), principal component regression (PCR), partial least square (PLS), and locally weighted regression (LWR) to quantify NO3- and CO32- using their bands around 1050 cm-1. For all samples, the PLS-based model was found to be the most efficient approach from a model building and application perspective.
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Affiliation(s)
- Poki Tse
- Pacific Northwest National Laboratory, Richland, Washington 99354, United States
- Department of Chemistry, Colorado School of Mines, Golden, Colorado 80401, United States
| | - Jenifer Shafer
- Department of Chemistry, Colorado School of Mines, Golden, Colorado 80401, United States
| | - Samuel A Bryan
- Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Amanda M Lines
- Pacific Northwest National Laboratory, Richland, Washington 99354, United States
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Lines AM, Tse P, Felmy HM, Wilson JM, Shafer J, Denslow KM, Still AN, King C, Bryan SA. Online, Real-Time Analysis of Highly Complex Processing Streams: Quantification of Analytes in Hanford Tank Sample. Ind Eng Chem Res 2019. [DOI: 10.1021/acs.iecr.9b03636] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- A. M. Lines
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - P. Tse
- Department of Chemistry, Colorado School of Mines, Golden, Colorado 80401, United States
| | - H. M. Felmy
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - J. M. Wilson
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - J. Shafer
- Department of Chemistry, Colorado School of Mines, Golden, Colorado 80401, United States
| | - K. M. Denslow
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - A. N. Still
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - C. King
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - S. A. Bryan
- Pacific Northwest National Laboratory, Richland, Washington 99352, United States
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Abstract
When a white figure is set in smooth continuous motion against a dark background, a ‘shadowy’ region forms around and behind it, somewhat similar to the wake that a boat leaves in water. Conversely, when a dark figure moves against a white background, this ‘wake’ appears lighter than the background. When several such figures move, these ‘wakes’ can link up in surprising ways. For example, if four white circles of radius r are positioned on a dark background at the vertices of an imaginary square whose width is, say, 4 r, and this imaginary square rotates about its centre, bands darker than the background form between the four circles, linking them through the centre. This ‘black cross’ is nonrigid, and is accompanied by dark ‘wakes’ on the outside of the circles. I call these illusory brightness regions ‘plasmas’. The relation of this effect to other motion-induced brightness illusions is considered. In particular, this effect has different properties than either induced gratings (McCourt, 1982 Vision Research22 119 – 134) or phantom gratings (Tynan and Sekuler, 1975 Science188 951 – 952). Plasmas are not due to retinal afterimages or persistence, since they form in regions never traversed by the moving figure. Nor are they an artifact of the computer screen, since the illusion occurs equally well in displays constructed from paper. Plasmas have the opposite phase relative to the inducing figure, disappear when a figure stops moving, are strongest at high background/inducer contrast, and are most visible when the luminance of the inducers is in the photopic range. Experiments measuring the strength of plasmas as a function of angular velocity and visual angle are described. A model is proposed according to which plasmas are due to a phase lag in luminance-edge induced lateral inhibition.
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Frank S, Reavis E, Greenlee M, Tse P. Integration of visual features over time: Behavior and brain activity. J Vis 2014. [DOI: 10.1167/14.10.711] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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Tse P. Binding-by-bursting: A new theory of attentional binding and the neural correlates of consciousness. J Vis 2013. [DOI: 10.1167/13.9.1104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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Schlegel A, Fogelson S, Li X, Lu Z, Alexander P, Meng M, Tse P. Visual art training in young adults changes neural circuitry in visual and motor areas. J Vis 2012. [DOI: 10.1167/12.9.1129] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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Fogelson S, Miller K, Kohler P, Granger R, Tse P. Equally invisible but neurally unequal: Cortical responses to invisible objects differ as a function of presentation method. J Vis 2012. [DOI: 10.1167/12.9.815] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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Schlegel A, Sinnott-Armstrong W, Wheatley T, Roskies A, Tse P. Visually-evoked readiness potentials reflect anticipation and/or preparation of future movements rather than acts of will. J Vis 2011. [DOI: 10.1167/11.11.935] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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Caplovitz G, Tse P. Extrastriate cortical activity reflects segmentation of motion into independent sources. J Vis 2011. [DOI: 10.1167/11.11.724] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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Tse P, Kohler P, Reavis E. Attention modulates perceptual rivalry within after-images. J Vis 2010. [DOI: 10.1167/10.7.194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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Tse P, Hsieh PJ. Smooth pursuit eye movements generate spurious motion signals that create a motion after effect. J Vis 2010. [DOI: 10.1167/8.6.385] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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Caplovitz G, Tse P. Dotted ellipses: Local and emergent motion signals differentially modulate BOLD activity in visual cortex. J Vis 2010. [DOI: 10.1167/9.8.674] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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Tse P. Smooth-pursuit eye-movements suppress motion processing. J Vis 2010. [DOI: 10.1167/9.8.409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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Hsieh PJ, Caplovitz G, Tse P. Bistable illusory rebound motion: Event-related functional magnetic resonance imaging of perceptual states and switches. J Vis 2010. [DOI: 10.1167/7.9.778] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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Hsieh PJ, Tse P. Pattern classification on BOLD signals reveals a novel mechanism underlying color filling-in. J Vis 2010. [DOI: 10.1167/8.6.1099] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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Paymer N, Caplovitz G, Tse P. Stimulus factors that influence the perceived direction of tilt-induced motion. J Vis 2010. [DOI: 10.1167/8.6.130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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Abstract
BACKGROUND Crohn's disease affects people world-wide, but the incidence in Asia is lower than in Western countries. This difference may be due to genetic and/or environmental factors. Three single nucleotide polymorphisms (SNPs) of the NOD2/CARD15 gene have been identified to be independently associated with the development of Crohn's disease in Caucasians. Whether these SNPs are involved in the pathogenesis of Crohn's disease in the Chinese population is unknown. AIM To determine if NOD2/CARD15 gene polymorphisms are found in Chinese patients with Crohn's disease. METHODS Sixty-five consecutive Chinese Crohn's disease patients had genotyping performed using sequence-specific PCR directed against the wild-type and the Arg702Trp, Gly908Arg and 3020insC variants of the NOD2/CARD15 gene. Controls consisted of 63 patients with ulcerative colitis and 70 patients with dyspepsia. RESULTS None of the patients with Crohn's disease had heterozygous or homozygous SNP variants. Similarly none of the ulcerative colitis or dyspeptic controls had these SNPs. CONCLUSION The three previously described SNPs associated with the development of Crohn's disease in Caucasians are not found in Chinese patients with Crohn's disease.
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Affiliation(s)
- R W L Leong
- Department of Medicine and Therapeutics, Chinese University of Hong Kong, Prince of Wales Hospital, Shatin, Hong Kong, China.
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Abstract
Anti-Helicobacter pylori antibodies were determined in 157 institutionalised Cantonese children, mean age 9.5 +/- 3.9 (SD) years, with profound neurodevelopmental disabilities. Eighty-seven (55.4%) were H. pylori seropositive compared with four of 50 (8%, P > 0.0002) of an age-matched control group, mean age 7.2 +/- 4.3 (SD) years. Eight of 15 seropositive children with a recent history of upper gastrointestinal bleeding underwent endoscopy and in all cases gastric infection with H.pylori was confirmed. Anthropometric data from institutionalised children revealed marked malnutrition but showed no significant difference between seropositive and seronegative children. Disabled children receiving long-term residential care in Hong Kong are confirmed to be at increased risk of H.pylori infection.
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Affiliation(s)
- P J Lewindon
- Department of Paediatrics, Prince of Wales Hospital, Chinese University of Hong Kong, Shatin, Hong Kong
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Peterson EM, Oda R, Tse P, Gastaldi C, Stone SC, de la Maza LM. Comparison of a single-antigen microimmunofluorescence assay and inclusion fluorescent-antibody assay for detecting chlamydial antibodies and correlation of the results with neutralizing ability. J Clin Microbiol 1989; 27:350-2. [PMID: 2644298 PMCID: PMC267310 DOI: 10.1128/jcm.27.2.350-352.1989] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
An inclusion fluorescent-antibody assay (IFA) with McCoy cells infected with Chlamydia trachomatis serovar L2 was compared with a single-antigen (L2) microimmunofluorescence (MIF) assay for the detection of antichalmydial antibodies. A total of 562 serum specimens were tested by both assays, and sera representing a range of titers were tested for their ability to neutralize the infectivity of C. trachomatis. Overall, there was poor correlation between the two assays (r2 = 0.62). With most sera the inclusion IFA was more sensitive. There was better correlation between IFA titer and ability to neutralize the five serovars tested (L2, L3, C, E, and F) than between the MIF assay and neutralization. In summary, the IFA appeared to be more sensitive than the MIF assay for detecting antibodies to C. trachomatis.
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Affiliation(s)
- E M Peterson
- Department of Pathology, University of California, Irvine 92717
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Tse P, Aarnaes SL, de la Maza LM, Peterson EM. Detection of herpes simplex virus by 8 h in shell vial cultures with primary rabbit kidney cells. J Clin Microbiol 1989; 27:199-200. [PMID: 2536389 PMCID: PMC267264 DOI: 10.1128/jcm.27.1.199-200.1989] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
Shell vial (SV) cultures for herpes simplex virus using primary rabbit kidney cells stained at 8 h after inoculation were compared with 20-h SV cultures as well as conventional tissue culture. Of the 326 clinical specimens examined, conventional culture detected 67, and of these, 61 (91%) and 42 (63%) were detected by 20-h SV cultures and 8-h SV cultures, respectively.
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Affiliation(s)
- P Tse
- Department of Pathology, University of California Irvine Medical Center, Orange 92668-3297
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Abstract
Nineteen patients were operated on for congenital muscular torticollis after the age of 1 year. Tenotomy gave good results below 5 years of age and resection of the sternocleidomastoid muscle was satisfactory in most of the older children.
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