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Go S, Tsuzuki Y, Yoneda H, Ichikawa Y, Ikeda T, Imai N, Imamura K, Niikura M, Nishimura D, Mizuno R, Takeda S, Ueno H, Watanabe S, Saito TY, Shimoura S, Sugawara S, Takamine A, Takahashi T. Demonstration of nuclear gamma-ray polarimetry based on a multi-layer CdTe Compton camera. Sci Rep 2024; 14:2573. [PMID: 38336981 DOI: 10.1038/s41598-024-52692-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2023] [Accepted: 01/22/2024] [Indexed: 02/12/2024] Open
Abstract
To detect and track structural changes in atomic nuclei, the systematic study of nuclear levels with firm spin-parity assignments is important. While linear polarization measurements have been applied to determine the electromagnetic character of gamma-ray transitions, the applicable range is strongly limited due to the low efficiency of the detection system. The multi-layer Cadmium-Telluride (CdTe) Compton camera can be a state-of-the-art gamma-ray polarimeter for nuclear spectroscopy with the high position sensitivity and the detection efficiency. We demonstrated the capability to operate this detector as a reliable gamma-ray polarimeter by using polarized 847-keV gamma rays produced by the [Formula: see text]([Formula: see text]) reaction. By combining the experimental data and simulated calculations, the modulation curve for the gamma ray was successfully obtained. A remarkably high polarization sensitivity was achieved, compatible with a reasonable detection efficiency. Based on the obtained results, a possible future gamma-ray polarimetery is discussed.
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Affiliation(s)
- S Go
- RIKEN Cluster for Pioneering Research, RIKEN, Wako, Saitama, Japan.
- RIKEN Nishina Center for Accelerator-Based Science, RIKEN, Wako, Saitama, Japan.
| | - Y Tsuzuki
- RIKEN Nishina Center for Accelerator-Based Science, RIKEN, Wako, Saitama, Japan
- Department of Physics, The University of Tokyo, Tokyo, Japan
- Kavli Institute for the Physics and Mathematics of the Universe (WPI), The University of Tokyo, Chiba, Japan
| | - H Yoneda
- RIKEN Nishina Center for Accelerator-Based Science, RIKEN, Wako, Saitama, Japan
- Lehrstuhl für Astronomie, Fakultät für Physik und Astronomie, Institut für Theoretische Physik und Astrophysik, Julius-Maximilians-Universität Würzburg, Emil-Fischer-Str. 31, 97074, Würzburg, Germany
| | - Y Ichikawa
- Department of Physics, Kyushu University, Fukuoka, Japan
| | - T Ikeda
- RIKEN Nishina Center for Accelerator-Based Science, RIKEN, Wako, Saitama, Japan
| | - N Imai
- Center for Nuclear Study, The University of Tokyo, Wako, Saitama, Japan
| | - K Imamura
- RIKEN Cluster for Pioneering Research, RIKEN, Wako, Saitama, Japan
- RIKEN Nishina Center for Accelerator-Based Science, RIKEN, Wako, Saitama, Japan
| | - M Niikura
- RIKEN Nishina Center for Accelerator-Based Science, RIKEN, Wako, Saitama, Japan
| | - D Nishimura
- Department of Natural Sciences, Tokyo City University, Tokyo, Japan
| | - R Mizuno
- Department of Physics, The University of Tokyo, Tokyo, Japan
| | - S Takeda
- Kavli Institute for the Physics and Mathematics of the Universe (WPI), The University of Tokyo, Chiba, Japan
| | - H Ueno
- RIKEN Cluster for Pioneering Research, RIKEN, Wako, Saitama, Japan
- RIKEN Nishina Center for Accelerator-Based Science, RIKEN, Wako, Saitama, Japan
| | - S Watanabe
- Institute of Space and Astronautical Science, Japan Aerospace Exploration Agency, Kanagawa, Japan
| | - T Y Saito
- Center for Nuclear Study, The University of Tokyo, Wako, Saitama, Japan
- Atomic, Molecular, and Optical Physics Laboratory, RIKEN, Wako, Saitama, Japan
| | - S Shimoura
- RIKEN Nishina Center for Accelerator-Based Science, RIKEN, Wako, Saitama, Japan
- Center for Nuclear Study, The University of Tokyo, Wako, Saitama, Japan
| | - S Sugawara
- Department of Natural Sciences, Tokyo City University, Tokyo, Japan
| | - A Takamine
- RIKEN Cluster for Pioneering Research, RIKEN, Wako, Saitama, Japan
- RIKEN Nishina Center for Accelerator-Based Science, RIKEN, Wako, Saitama, Japan
| | - T Takahashi
- Department of Physics, The University of Tokyo, Tokyo, Japan
- Kavli Institute for the Physics and Mathematics of the Universe (WPI), The University of Tokyo, Chiba, Japan
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2
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Ito Y, Takeda S, Nakajima T, Oyama A, Takeshita H, Miki K, Takami Y, Takeya Y, Shimamura M, Rakugi H, Morishita R. High-Fat Diet-Induced Diabetic Conditions Exacerbate Cognitive Impairment in a Mouse Model of Alzheimer's Disease Via a Specific Tau Phosphorylation Pattern. J Prev Alzheimers Dis 2024; 11:138-148. [PMID: 38230726 DOI: 10.14283/jpad.2023.85] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2024]
Abstract
BACKGROUND Epidemiological evidence has demonstrated a clear association between diabetes mellitus and increased risk of Alzheimer's disease (AD). Cerebral accumulation of phosphorylated tau aggregates, a cardinal neuropathological feature of AD, is associated with neurodegeneration and cognitive decline. Clinical and experimental studies indicate that diabetes mellitus affects the development of tau pathology; however, the underlying molecular mechanisms remain unknown. OBJECTIVE In the present study, we used a unique diabetic AD mouse model to investigate the changes in tau phosphorylation patterns occurring in the diabetic brain. DESIGN Tau-transgenic mice were fed a high-fat diet (n = 24) to model diabetes mellitus. These mice developed prominent obesity, severe insulin resistance, and mild hyperglycemia, which led to early-onset neurodegeneration and behavioral impairment associated with the accumulation of hyperphosphorylated tau aggregates. RESULTS Comprehensive phosphoproteomic analysis revealed a unique tau phosphorylation signature in the brains of mice with diabetic AD. Bioinformatic analysis of the phosphoproteomics data revealed putative tau-related kinases and cell signaling pathways involved in the interaction between diabetes mellitus and AD. CONCLUSION These findings offer potential novel targets that can be used to develop tau-based therapies and biomarkers for use in AD.
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Affiliation(s)
- Y Ito
- Shuko Takeda, MD, PhD and Ryuichi Morishita, MD, PhD, Department of Clinical Gene Therapy, Graduate School of Medicine, Osaka University, 2-2 Yamadaoka, Suita, Osaka, 565-0871, Japan, Tel: 81-6-6210-8351, Fax: 81-6-6210-8354, and
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3
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Asagoshi Y, Hitomi E, Nakamura N, Takeda S. Gene-flow investigation between garden and wild roses planted in close distance. Plant Biotechnol (Tokyo) 2023; 40:283-288. [PMID: 38434113 PMCID: PMC10905366 DOI: 10.5511/plantbiotechnology.23.0708a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Accepted: 07/08/2023] [Indexed: 03/05/2024]
Abstract
Rose is a major ornamental plant, and a lot of cultivars with attractive morphology, color and scent have been generated by classical breeding. Recent progress of genetic modification produces a novel cultivar with attractive features. In both cases, a major problem is the gene-flow from cultivated or genetically modified (GM) plants to wild species, causing reduction of natural population. To investigate whether gene-flow occurs in wild species, molecular analysis with DNA markers with higher efficient technique is useful. Here we investigated the gene-flow from cultivated roses (Rosa×hybrida) to wild rose species planted in close distance in the field. The overlapping flowering periods and visiting insects suggest that pollens were transported by insects between wild and cultivated roses. We examined the germination ratio of seeds from wild species, and extracted DNA and checked with KSN and APETALA2 (AP2) DNA markers to detect transposon insertions. Using two markers, we successfully detected the outcross between wild and cultivated roses. For higher efficiency, we established a bulking method, where DNA, leaves or embryos were pooled, enabling us to that check the outcross of many plants. Our results suggest that wild species and garden cultivars can cross in close distance, so that they should be planted in distance, and checked the outcross with multiple DNA markers.
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Affiliation(s)
- Yuna Asagoshi
- Department of Agricultural and Life Science, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Shimogamo Hangi-cho, Sakyo-ku, Kyoto 606-8522, Japan
| | - Eri Hitomi
- Department of Agricultural and Life Science, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Shimogamo Hangi-cho, Sakyo-ku, Kyoto 606-8522, Japan
| | - Noriko Nakamura
- Research Institute, Suntory Global Innovation Center Ltd., Seikadai 8-1-1, Seika-cho, Kyoto 619-0284, Japan
| | - Seiji Takeda
- Department of Agricultural and Life Science, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Shimogamo Hangi-cho, Sakyo-ku, Kyoto 606-8522, Japan
- Biotechnology Research Department, Kyoto Prefectural Agriculture, Forestry and Fisheries Technology Center, Kitaina Yazuma Oji 74, Seika-cho, Kyoto 619-0244, Japan
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4
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Takeda S, Hamamuki A, Ushirogata K, Takasuka TE. Binding properties of recombinant LDL receptor and LOX-1 receptor to LDL measured using bio-layer interferometry and atomic force microscopy. Biophys Chem 2023; 300:107069. [PMID: 37385179 DOI: 10.1016/j.bpc.2023.107069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Revised: 05/26/2023] [Accepted: 06/09/2023] [Indexed: 07/01/2023]
Abstract
Oxidation of low-density lipoproteins (LDLs) triggers a recognition by scavenger receptors such as lectin-like oxidized LDL receptor-1 (LOX-1) and is related to inflammation and cardiovascular diseases. Although LDLs that are recognized by LOX-1 can be risk-related LDLs, conventional LDL detection methods using commercially available recombinant receptors remain undeveloped. Using a bio-layer interferometry (BLI), we investigated the binding of recombinant LOX-1 (reLOX-1) and LDL receptors to the oxidized LDLs. The recombinant LDL receptor preferably bound minimally modified LDLs, while the reLOX-1 recognized extensively oxidized LDLs. An inversed response of the BLI was observed during the binding in the case of reLOX-1. AFM study showed that the extensively oxidized LDLs and aggregates of LDLs were observed on the surface, supporting the results. Altogether, a combined use of these recombinant receptors and the BLI method is useful in detecting high-risk LDLs such as oxidized LDLs and modified LDLs.
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Affiliation(s)
- Seiji Takeda
- Faculty of Pharmaceutical Sciences, Hokkaido University of Science, 15-4-1, Maeda 7-Jo, Teine-ku, Sapporo, Hokkaido 006-8585, Japan.
| | - Ao Hamamuki
- Faculty of Pharmaceutical Sciences, Hokkaido University of Science, 15-4-1, Maeda 7-Jo, Teine-ku, Sapporo, Hokkaido 006-8585, Japan
| | - Kanako Ushirogata
- Research Faculty of Agriculture, Hokkaido University, Sapporo, Kita 9, Nishi 9, Kita-ku, Sapporo, Hokkaido 060-0809, Japan
| | - Taichi E Takasuka
- Research Faculty of Agriculture, Hokkaido University, Sapporo, Kita 9, Nishi 9, Kita-ku, Sapporo, Hokkaido 060-0809, Japan; Global Station for Food, Land and Water Resources, Hokkaido University, Sapporo, Kita 9, Nishi 9, Kita-ku, Sapporo, Hokkaido 060-0809, Japan
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5
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Okumura T, Azuma T, Bennett DA, Chiu I, Doriese WB, Durkin MS, Fowler JW, Gard JD, Hashimoto T, Hayakawa R, Hilton GC, Ichinohe Y, Indelicato P, Isobe T, Kanda S, Katsuragawa M, Kawamura N, Kino Y, Mine K, Miyake Y, Morgan KM, Ninomiya K, Noda H, O'Neil GC, Okada S, Okutsu K, Paul N, Reintsema CD, Schmidt DR, Shimomura K, Strasser P, Suda H, Swetz DS, Takahashi T, Takeda S, Takeshita S, Tampo M, Tatsuno H, Ueno Y, Ullom JN, Watanabe S, Yamada S. Proof-of-Principle Experiment for Testing Strong-Field Quantum Electrodynamics with Exotic Atoms: High Precision X-Ray Spectroscopy of Muonic Neon. Phys Rev Lett 2023; 130:173001. [PMID: 37172243 DOI: 10.1103/physrevlett.130.173001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2021] [Revised: 02/10/2023] [Accepted: 03/10/2023] [Indexed: 05/14/2023]
Abstract
To test bound-state quantum electrodynamics (BSQED) in the strong-field regime, we have performed high precision x-ray spectroscopy of the 5g-4f and 5f- 4d transitions (BSQED contribution of 2.4 and 5.2 eV, respectively) of muonic neon atoms in the low-pressure gas phase without bound electrons. Muonic atoms have been recently proposed as an alternative to few-electron high-Z ions for BSQED tests by focusing on circular Rydberg states where nuclear contributions are negligibly small. We determined the 5g_{9/2}- 4f_{7/2} transition energy to be 6297.08±0.04(stat)±0.13(syst) eV using superconducting transition-edge sensor microcalorimeters (5.2-5.5 eV FWHM resolution), which agrees well with the most advanced BSQED theoretical prediction of 6297.26 eV.
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Affiliation(s)
- T Okumura
- Atomic, Molecular, and Optical Physics Laboratory, RIKEN, Wako 351-0198, Japan
| | - T Azuma
- Atomic, Molecular, and Optical Physics Laboratory, RIKEN, Wako 351-0198, Japan
| | - D A Bennett
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - I Chiu
- Institute for Radiation Sciences, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - W B Doriese
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - M S Durkin
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - J W Fowler
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - J D Gard
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - T Hashimoto
- Advanced Science Research Center (ASRC), Japan Atomic Energy Agency (JAEA), Tokai 319-1184, Japan
| | - R Hayakawa
- Department of Physics, Tokyo Metropolitan University, Tokyo 192-0397, Japan
| | - G C Hilton
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - Y Ichinohe
- Department of Physics, Rikkyo University, Tokyo 171-8501, Japan
| | - P Indelicato
- Laboratoire Kastler Brossel, Sorbonne Université, CNRS, ENS-PSL Research University, Collège de France, Case 74, 4, place Jussieu, 75005 Paris, France
| | - T Isobe
- RIKEN Nishina Center, RIKEN, Wako 351-0198, Japan
| | - S Kanda
- High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 305-0801, Japan
| | - M Katsuragawa
- Kavli IPMU (WPI), The University of Tokyo, Kashiwa, Chiba 277-8583, Japan
| | - N Kawamura
- High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 305-0801, Japan
| | - Y Kino
- Department of Chemistry, Tohoku University, Sendai, Miyagi 980-8578, Japan
| | - K Mine
- Kavli IPMU (WPI), The University of Tokyo, Kashiwa, Chiba 277-8583, Japan
| | - Y Miyake
- High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 305-0801, Japan
| | - K M Morgan
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
- Department of Physics, University of Colorado Boulder, Boulder, Colorado 80309, USA
| | - K Ninomiya
- Institute for Radiation Sciences, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - H Noda
- Department of Earth and Space Science, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - G C O'Neil
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - S Okada
- Engineering Science Laboratory, Chubu University, Kasugai, Aichi 487-8501, Japan
| | - K Okutsu
- Department of Chemistry, Tohoku University, Sendai, Miyagi 980-8578, Japan
| | - N Paul
- Laboratoire Kastler Brossel, Sorbonne Université, CNRS, ENS-PSL Research University, Collège de France, Case 74, 4, place Jussieu, 75005 Paris, France
| | - C D Reintsema
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - D R Schmidt
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - K Shimomura
- High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 305-0801, Japan
| | - P Strasser
- High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 305-0801, Japan
| | - H Suda
- Department of Physics, Tokyo Metropolitan University, Tokyo 192-0397, Japan
| | - D S Swetz
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - T Takahashi
- Kavli IPMU (WPI), The University of Tokyo, Kashiwa, Chiba 277-8583, Japan
| | - S Takeda
- Kavli IPMU (WPI), The University of Tokyo, Kashiwa, Chiba 277-8583, Japan
| | - S Takeshita
- High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 305-0801, Japan
| | - M Tampo
- High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 305-0801, Japan
| | - H Tatsuno
- Department of Physics, Tokyo Metropolitan University, Tokyo 192-0397, Japan
| | - Y Ueno
- Atomic, Molecular, and Optical Physics Laboratory, RIKEN, Wako 351-0198, Japan
| | - J N Ullom
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - S Watanabe
- Department of Space Astronomy and Astrophysics, Institute of Space and Astronautical Science (ISAS), Japan Aerospace Exploration Agency (JAXA), Sagamihara, Kanagawa 252-5210, Japan
| | - S Yamada
- Department of Physics, Rikkyo University, Tokyo 171-8501, Japan
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6
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Hirano T, Okamoto A, Oda Y, Sakamoto T, Takeda S, Matsuura T, Ikeda Y, Higaki T, Kimura S, Sato MH. Ab-GALFA, A bioassay for insect gall formation using the model plant Arabidopsis thaliana. Sci Rep 2023; 13:2554. [PMID: 36781988 PMCID: PMC9925437 DOI: 10.1038/s41598-023-29302-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Accepted: 02/02/2023] [Indexed: 02/15/2023] Open
Abstract
Insect galls are abnormal plant organs formed by gall-inducing insects to provide shelter and nutrients for themselves. Although insect galls are spatialized complex structures with unique shapes and functions, the molecular mechanism of the gall formation and the screening system for the gall inducing effectors remains unknown. Here, we demonstrate that an extract of a gall-inducing aphid, Schlechtendalia chinensis, induces an abnormal structure in the root-tip region of Arabidopsis seedlings. The abnormal structure is composed of stem-like cells, vascular, and protective tissues, as observed in typical insect galls. Furthermore, we confirm similarities in the gene expression profiles between the aphid-treated seedlings and the early developmental stages of Rhus javanica galls formed by S. chinensis. Based on the results, we propose a model system for analyzing the molecular mechanisms of gall formation: the Arabidopsis-based Gall-Forming Assay (Ab-GALFA). Ab-GALFA could be used not only as a model to elucidate the mechanisms underlying gall formation, but also as a bioassay system to isolate insect effector molecules of gall-induction.
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Affiliation(s)
- Tomoko Hirano
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Shimogamo-Hangi-Cho, Sakyo-Ku, Kyoto, 606-8522, Japan
- Center for Frontier Natural History, Kyoto Prefectural University, Shimogamo-Hangi-Cho, Sakyo-Ku, Kyoto, 606-8522, Japan
| | - Ayaka Okamoto
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Shimogamo-Hangi-Cho, Sakyo-Ku, Kyoto, 606-8522, Japan
| | - Yoshihisa Oda
- Department of Biological Science, Graduate School of Science, Nagoya University, Furo-Cho, Chikusa-Ku, Nagoya, Aichi, 464-8602, Japan
| | - Tomoaki Sakamoto
- Laboratory of Plant Ecological and Evolutionary Developmental Biology, Department of Bioresource and Environmental Sciences, Kyoto Sangyo University, Kamigamo-Motoyama, Kita-Ku, Kyoto, 603-8555, Japan
| | - Seiji Takeda
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Shimogamo-Hangi-Cho, Sakyo-Ku, Kyoto, 606-8522, Japan
- Biotechnology Research Department, Kyoto Prefectural Agriculture, Forestry and Fisheries Technology Center, 74 Oji, Kitainayazuma, Seika-Cho, Soraku-Gun, Kyoto, 619-0244, Japan
| | - Takakazu Matsuura
- Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, Okayama, 710-0046, Japan
| | - Yoko Ikeda
- Institute of Plant Science and Resources, Okayama University, Chuo 2-20-1, Kurashiki, Okayama, 710-0046, Japan
| | - Takumi Higaki
- Department of Biological Sciences, Graduate School of Science and Technology, Kumamoto University, Kumamoto, 860-8555, Japan
| | - Seisuke Kimura
- Laboratory of Plant Ecological and Evolutionary Developmental Biology, Department of Bioresource and Environmental Sciences, Kyoto Sangyo University, Kamigamo-Motoyama, Kita-Ku, Kyoto, 603-8555, Japan
| | - Masa H Sato
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Shimogamo-Hangi-Cho, Sakyo-Ku, Kyoto, 606-8522, Japan.
- Center for Frontier Natural History, Kyoto Prefectural University, Shimogamo-Hangi-Cho, Sakyo-Ku, Kyoto, 606-8522, Japan.
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7
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Temman H, Sakamoto T, Ueda M, Sugimoto K, Migihashi M, Yamamoto K, Tsujimoto-Inui Y, Sato H, Shibuta MK, Nishino N, Nakamura T, Shimada H, Taniguchi YY, Takeda S, Aida M, Suzuki T, Seki M, Matsunaga S. Histone deacetylation regulates de novo shoot regeneration. PNAS Nexus 2023; 2:pgad002. [PMID: 36845349 PMCID: PMC9944245 DOI: 10.1093/pnasnexus/pgad002] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Accepted: 01/04/2023] [Indexed: 01/09/2023]
Abstract
During de novo plant organ regeneration, auxin induction mediates the formation of a pluripotent cell mass called callus, which regenerates shoots upon cytokinin induction. However, molecular mechanisms underlying transdifferentiation remain unknown. Here, we showed that the loss of HDA19, a histone deacetylase (HDAC) family gene, suppresses shoot regeneration. Treatment with an HDAC inhibitor revealed that the activity of this gene is essential for shoot regeneration. Further, we identified target genes whose expression was regulated through HDA19-mediated histone deacetylation during shoot induction and found that ENHANCER OF SHOOT REGENERATION 1 and CUP-SHAPED COTYLEDON 2 play important roles in shoot apical meristem formation. Histones at the loci of these genes were hyperacetylated and markedly upregulated in hda19. Transient ESR1 or CUC2 overexpression impaired shoot regeneration, as observed in hda19. Therefore, HDA19 mediates direct histone deacetylation of CUC2 and ESR1 loci to prevent their overexpression at the early stages of shoot regeneration.
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Affiliation(s)
| | | | - Minoru Ueda
- Plant Genomic Network Research Team, RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro, Tsurumi, Yokohama, Kanagawa 230-0045, Japan,Plant Epigenome Regulation Laboratory, RIKEN Cluster for Pioneering Research, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
| | - Kaoru Sugimoto
- Department of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba 278-8510, Japan
| | - Masako Migihashi
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan
| | - Kazunari Yamamoto
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan
| | - Yayoi Tsujimoto-Inui
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan
| | - Hikaru Sato
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan
| | - Mio K Shibuta
- Academic Assembly (Faculty of Science), Yamagata University, Kojirakawa, Yamagata 990-8560, Japan
| | - Norikazu Nishino
- Graduate School of Life Science and Systems Engineering, Kyushu Institute of Technology, 2-4 Hibikino, Wakamatsu-ku, Kitakyushu-shi, Fukuoka 808-0196, Japan
| | - Tomoe Nakamura
- Plant Genomic Network Research Team, RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro, Tsurumi, Yokohama, Kanagawa 230-0045, Japan,Department of Biological Science and Technology, Tokyo University of Science, 6-3-1 Niijuku, Katsushika-ku, Tokyo 125-8585, Japan
| | - Hiroaki Shimada
- Department of Biological Science and Technology, Tokyo University of Science, 6-3-1 Niijuku, Katsushika-ku, Tokyo 125-8585, Japan
| | - Yukimi Y Taniguchi
- School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo 669–1337, Japan
| | - Seiji Takeda
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Shimogamo Hangi-cho, Sakyo-ku, Kyoto 60-8522, Japan,Biotechnology Research Department, Kyoto Prefectural Agriculture Forestry and Fisheries Technology Centre, 74 Kitaina Yazuma Oji, Seika, Kyoto 619-0244, Japan
| | - Mitsuhiro Aida
- International Research Organization for Advanced Science and Technology, Kumamoto University, 2-39-1 Kurokami, Chuo-ku, Kumamoto 860-8555, Japan,International Research Center for Agricultural and Environmental Biology, Kumamoto University, 2-39-1 Kurokami, Chuo-ku, Kumamoto 860-855, Japan
| | - Takamasa Suzuki
- College of Bioscience and Biotechnology, Chubu University, 1200 Matsumoto-cho, Kasugai, Aichi 487-8501, Japan
| | - Motoaki Seki
- Plant Genomic Network Research Team, RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro, Tsurumi, Yokohama, Kanagawa 230-0045, Japan,Plant Epigenome Regulation Laboratory, RIKEN Cluster for Pioneering Research, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan
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8
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Takai S, Shimada T, Takeda S, Koike K. Evaluating the effectiveness of a geostatistical approach with groundwater flow modeling for three-dimensional estimation of a contaminant plume. J Contam Hydrol 2022; 251:104097. [PMID: 36302322 DOI: 10.1016/j.jconhyd.2022.104097] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2022] [Revised: 10/06/2022] [Accepted: 10/16/2022] [Indexed: 06/16/2023]
Abstract
When assessing the risk from an underground environment that is contaminated by radioactive nuclides and hazardous chemicals and planning for remediation, the contaminant plume distribution and the associated uncertainty from measured data should be estimated accurately. While the release history of the contaminant plume may be unknown, the extent of the plume caused by a known source and the associated uncertainty can be calculated inversely from the concentration data using a geostatistical method that accounts for the temporal correlation of its release history and groundwater flow modeling. However, the preceding geostatistical approaches have three drawbacks: (1) no applications of the three-dimensional plume estimation using concentration data from multiple depths in real situations, (2) no constraints for the estimation of the plume distribution, which can yield negative concentration and large uncertainties, and (3) few applications to actual cases with multiple contaminants. To address these problems, the non-negativity constraint using Gibbs sampling was incorporated into the geostatistical method with groundwater flow modeling for contaminant plume estimation. This method was then tested on groundwater contamination in the Gloucester landfill in Ontario, Canada, using three-dimensional contaminant transport model and concentration data from multiple depths. The method was applied to three water soluble organic contaminants: 1,4-dioxane, tetrahydrofuran, and diethyl ether. The effectiveness of the proposed method was verified by the general agreement of the calculated plume distributions of the three contaminants with concentration data from 66 points in 1982 (linear correlation coefficient of about 0.7). In particular, the reproduced peak of 1,4-dioxane corresponding to the large disposal in 1978 was more accurate than the result of preceding minimum relative entropy-based studies. The same peak also appeared in the tetrahydrofuran and diethyl ether distributions approximately within the range of the retardation factor derived from the fraction of organic carbon.
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Affiliation(s)
- Shizuka Takai
- Nuclear Safety Research Center, Japan Atomic Energy Agency, 2-4 Shirakata, Tokai, Ibaraki 319-1195, Japan; Department of Urban Management, Graduate School of Engineering, Kyoto University, Katsura C1-2-215, Kyoto 615-8540, Japan.
| | - Taro Shimada
- Nuclear Safety Research Center, Japan Atomic Energy Agency, 2-4 Shirakata, Tokai, Ibaraki 319-1195, Japan.
| | - Seiji Takeda
- Nuclear Safety Research Center, Japan Atomic Energy Agency, 2-4 Shirakata, Tokai, Ibaraki 319-1195, Japan.
| | - Katsuaki Koike
- Department of Urban Management, Graduate School of Engineering, Kyoto University, Katsura C1-2-215, Kyoto 615-8540, Japan.
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9
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Takeda S, Hamamura Y, Sakamoto T, Kimura S, Aida M, Higashiyama T. Non-cell-autonomous regulation of petal initiation in Arabidopsis thaliana. Development 2022; 149:276288. [DOI: 10.1242/dev.200684] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Accepted: 08/04/2022] [Indexed: 11/20/2022]
Abstract
ABSTRACT
In many flowering plants, petals initiate in alternate positions from first whorl sepals, suggesting possible signaling between sepal boundaries and petal initiation sites. PETAL LOSS (PTL) and RABBIT EARS (RBE) regulate petal initiation in Arabidopsis thaliana and their transcripts are expressed in sepal boundary and petal initiation sites, respectively, suggesting that PTL acts in a non-cell-autonomous manner. Here, we determined that cells expressing PTL and RBE fusion proteins did not overlap but were adjacent, confirming the non-cell-autonomous function of PTL. Genetic ablation of intersepal cells by expressing the diphtheria toxin-A chain gene driven by the PTL promoter resulted in flowers lacking petals, suggesting these cells are required for petal initiation. Transcriptome analysis combined with a PTL induction system revealed 42 genes that were upregulated under PTL activation, including UNUSUAL FLORAL ORGANS (UFO), which likely plays an important role in petal initiation. These findings suggest a molecular mechanism in which PTL indirectly regulates petal initiation and UFO mediates positional signaling between the sepal boundary and petal initiation sites.
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Affiliation(s)
- Seiji Takeda
- Department of Agricultural and Life Science, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University 1 , Shimogamo Hangi-cho, Sakyo-ku, Kyoto 606-8522 , Japan
- Kyoto Prefectural Agriculture Forestry and Fisheries Technology Centre 2 Biotechnology Research Department , , Kitaina Yazuma Oji 74, Seika, Kyoto 619-0244 , Japan
| | - Yuki Hamamura
- Graduate School of Science, Nagoya University 3 Division of Biological Science , , Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602 , Japan
- University of Hamburg 4 Department of Developmental Biology , , Ohnhorststr. 18, Hamburg 22609 , Germany
| | - Tomoaki Sakamoto
- Center for Plant Sciences, Kyoto Sangyo University 5 , Kyoto 603-8555 , Japan
| | - Seisuke Kimura
- Center for Plant Sciences, Kyoto Sangyo University 5 , Kyoto 603-8555 , Japan
- Faculty of Life Sciences, Kyoto Sangyo University 6 Department of Industrial Life Sciences , , Kyoto 603-8555 , Japan
| | - Mitsuhiro Aida
- International Research Organization for Advanced Science and Technology (IROAST), Kumamoto University 7 , 2-39-1, Kurokami, Chuo-ku, Kumamoto 860-8555 , Japan
- International Research Center for Agricultural and Environmental Biology, Kumamoto University 8 , 2-39-1 Kurokami, Chuo-ku, Kumamoto 860-8555 , Japan
| | - Tetsuya Higashiyama
- Graduate School of Science, Nagoya University 3 Division of Biological Science , , Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8602 , Japan
- Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University 9 , Furo-cho, Chikusa-ku, Nagoya, Aichi 464-8601 , Japan
- Graduate School of Science, The University of Tokyo 10 Department of Biological Sciences , , 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033 , Japan
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10
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Okimune K, Hataya S, Matsumoto K, Ushirogata K, Banko P, Takeda S, Takasuka TE. Histone chaperone-mediated co-expression assembly of tetrasomes and nucleosomes. FEBS Open Bio 2021; 11:2912-2920. [PMID: 34614293 PMCID: PMC8564334 DOI: 10.1002/2211-5463.13311] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Revised: 09/16/2021] [Accepted: 10/05/2021] [Indexed: 11/07/2022] Open
Abstract
The nucleosome, a basic unit of chromatin found in all eukaryotes, is thought to be assembled through the orchestrated activity of several histone chaperones and chromatin assembly factors in a stepwise manner, proceeding from tetrasome assembly, to H2A/H2B deposition, and finally to formation of the mature nucleosome. In this study, we demonstrate chaperone-mediated assembly of both tetrasomes and nucleosomes on the well-defined Widom 601 positioning sequence using a co-expression/reconstitution wheat germ cell-free system. The purified tetrasomes and nucleosomes were positioned around the center of a given sequence. The heights and diameters were measured by atomic force microscopy. Together with the reported unmodified native histones produced by the wheat germ cell-free platform, our method is expected to be useful for downstream applications in the field of chromatin research.
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Affiliation(s)
- Kei‐ichi Okimune
- Research Faculty of AgricultureHokkaido UniversitySapporoJapan
- Graduate School of Global Food ResourcesHokkaido UniversitySapporoJapan
| | - Shogo Hataya
- Research Faculty of AgricultureHokkaido UniversitySapporoJapan
- Graduate School of Global Food ResourcesHokkaido UniversitySapporoJapan
| | - Kazuki Matsumoto
- Research Faculty of AgricultureHokkaido UniversitySapporoJapan
- Graduate School of Global Food ResourcesHokkaido UniversitySapporoJapan
| | - Kanako Ushirogata
- Graduate School of Global Food ResourcesHokkaido UniversitySapporoJapan
| | - Petra Banko
- Research Faculty of AgricultureHokkaido UniversitySapporoJapan
| | - Seiji Takeda
- Faculty of Pharmaceutical SciencesHokkaido University of ScienceSapporoJapan
| | - Taichi E. Takasuka
- Research Faculty of AgricultureHokkaido UniversitySapporoJapan
- Graduate School of Global Food ResourcesHokkaido UniversitySapporoJapan
- Global Institute for Collaborative Research and EducationHokkaido UniversitySapporoJapan
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11
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Sugimoto T, Sakurai T, Akatsu H, Doi T, Fujiwara Y, Hirakawa A, Kinoshita F, Kuzuya M, Lee S, Matsuo K, Michikawa M, Ogawa S, Otsuka R, Sato K, Shimada H, Suzuki H, Suzuki H, Takechi H, Takeda S, Umegaki H, Wakayama S, Arai H. The Japan-Multimodal Intervention Trial for Prevention of Dementia (J-MINT): The Study Protocol for an 18-Month, Multicenter, Randomized, Controlled Trial. J Prev Alzheimers Dis 2021; 8:465-476. [PMID: 34585222 PMCID: PMC8187136 DOI: 10.14283/jpad.2021.29] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Background/Objectives The Japan-multimodal intervention trial for prevention of dementia (J-MINT) is intended to verify the effectiveness of multi-domain interventions and to clarify the mechanism of cognitive improvement and deterioration by carrying out assessment of dementia-related biomarkers, omics analysis and brain imaging analysis among older adults at high risk of dementia. Moreover, the J-MINT trial collaborates with partnering private enterprises in the implementation of relevant interventional measures. This manuscript describes the study protocol. Design/Setting Eighteen-month, multi-centered, randomized controlled trial. Participants We plan to recruit 500 older adults aged 65–85 years with mild cognitive impairment. Subjects will be centrally randomized into intervention and control groups at a 1:1 allocation ratio using the dynamic allocation method with all subjects stratified by age, sex, and cognition. Intervention The multi-domain intervention program includes: (1) management of vascular risk factors; (2) group-based physical exercise and self-monitoring of physical activity; (3) nutritional counseling; and (4) cognitive training. Health-related information will be provided to the control group every two months. Measurements The primary and secondary outcomes will be assessed at baseline, 6-, 12-, and 18-month follow-up. The primary outcome is the change from baseline to 18 months in a global composite score combining several neuropsychological domains. Secondary outcomes include: cognitive change in each neuropsychological test, incident dementia, changes in blood and dementia-related biomarkers, changes in geriatric assessment including activities of daily living, frailty status and neuroimaging, and number of medications taken. Conclusions This trial that enlist the support of private enterprises will lead to the creation of new services for dementia prevention as well as to verify the effectiveness of multi-domain interventions for dementia prevention. Electronic Supplementary Material Supplementary material is available for this article at 10.14283/jpad.2021.29 and is accessible for authorized users.
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Affiliation(s)
- T Sugimoto
- Takashi Sakurai, 7-430 Morioka, Obu, Aichi, 474-8511, Japan, Tel: +81-562-46-2311, E-mail:
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12
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Watanabe H, Sanami S, Kitasaka H, Tsuzuki Y, Kida Y, Takeda S, Kondo F, Takeda S, Fukunaga N, Asada Y. IMPROVEMENT OF AN AUTOMATIC PRONUCLEAR NUMBER DETECTION SYSTEM BY INTRODUCTION OF NEW ANALYTICAL METHODS. Fertil Steril 2021. [DOI: 10.1016/j.fertnstert.2021.07.417] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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13
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Kondo F, Fukunaga N, Sanami S, Kitasaka H, Tsuzuki Y, Kida Y, Takeda S, Watanabe H, Takeda S, Asada Y. CYTOPLASMIC MORPHOLOGICAL CHARACTERISTICSAFFECT 2PN DETECTION IN AN AUTOMATIC PRONUCLEAR NUMBER DETECTION SYSTEM USING DEEP LEARNING TECHNOLOGY. Fertil Steril 2021. [DOI: 10.1016/j.fertnstert.2021.07.434] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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14
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Takeda S, Hirano T, Ohshima I, Sato MH. Recent Progress Regarding the Molecular Aspects of Insect Gall Formation. Int J Mol Sci 2021; 22:9424. [PMID: 34502330 PMCID: PMC8430891 DOI: 10.3390/ijms22179424] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2021] [Revised: 08/26/2021] [Accepted: 08/27/2021] [Indexed: 11/16/2022] Open
Abstract
Galls are characteristic plant structures formed by cell size enlargement and/or cell proliferation induced by parasitic or pathogenic organisms. Insects are a major inducer of galls, and insect galls can occur on plant leaves, stems, floral buds, flowers, fruits, or roots. Many of these exhibit unique shapes, providing shelter and nutrients to insects. To form unique gall structures, gall-inducing insects are believed to secrete certain effector molecules and hijack host developmental programs. However, the molecular mechanisms of insect gall induction and development remain largely unknown due to the difficulties associated with the study of non-model plants in the wild. Recent advances in next-generation sequencing have allowed us to determine the biological processes in non-model organisms, including gall-inducing insects and their host plants. In this review, we first summarize the adaptive significance of galls for insects and plants. Thereafter, we summarize recent progress regarding the molecular aspects of insect gall formation.
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Affiliation(s)
- Seiji Takeda
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Shimogamo-Hangi-cho, Sakyo-ku, Kyoto 606-8522, Japan; (S.T.); (T.H.); (I.O.)
- Biotechnology Research Department, Kyoto Prefectural Agriculture Forestry and Fisheries Technology Center, Kitainayazuma Oji 74, Seika, Kyoto 619-0244, Japan
- Center for Frontier Natural History, Kyoto Prefectural University, Shimogamo-Hangi-cho, Sakyo-ku, Kyoto 606-8522, Japan
| | - Tomoko Hirano
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Shimogamo-Hangi-cho, Sakyo-ku, Kyoto 606-8522, Japan; (S.T.); (T.H.); (I.O.)
- Center for Frontier Natural History, Kyoto Prefectural University, Shimogamo-Hangi-cho, Sakyo-ku, Kyoto 606-8522, Japan
| | - Issei Ohshima
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Shimogamo-Hangi-cho, Sakyo-ku, Kyoto 606-8522, Japan; (S.T.); (T.H.); (I.O.)
- Center for Frontier Natural History, Kyoto Prefectural University, Shimogamo-Hangi-cho, Sakyo-ku, Kyoto 606-8522, Japan
| | - Masa H. Sato
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Shimogamo-Hangi-cho, Sakyo-ku, Kyoto 606-8522, Japan; (S.T.); (T.H.); (I.O.)
- Center for Frontier Natural History, Kyoto Prefectural University, Shimogamo-Hangi-cho, Sakyo-ku, Kyoto 606-8522, Japan
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15
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Takeda S, Fukunaga N, Sanami S, Tsuzuki Y, Kitasaka H, Takeda S, Watanabe H, Kida Y, Kondou F, Asada Y. P–156 Automatic pronuclear detection based on deep learning technology has clinical utility. Hum Reprod 2021. [DOI: 10.1093/humrep/deab130.155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Abstract
Study question
Does the performance of an automatic pronuclear detection system based on deep learning technology have clinical utility?
Summary answer
Output results for 2PN detection using the automatic system powered by deep learning technology has clinical utility.
What is known already
In order to establish a more objective embryo evaluation system, we have been developing an automatic pronuclear detection system that utilizes deep learning technology based on Time- Lapse (TL) images. We have previously reported that the accuracy of pronuclei detection was improved by introducing an analysis method using 11 slices in the Z axis. In this study, we evaluated the potential clinical practicality of the automatic pronuclear detection system.
Study design, size, duration
Embryos clinically evaluated between May 2018 and December 2019 by embryologists were chosen for this study. We prepared for analysis TL videos of 995 embryos that had been evaluated as having 0, 1, 2, and 3PN.
Participants/materials, setting, methods
Part1:We compared the outputs of the automatic pronuclear detection system with these embryologists(three junior embryologists (1a), three intermediate embryologists (1b),and three senior embryologists (1c)) who had judged the pronuclei number from TL videos from 40 embryos each having 0,1,2,and 3PN.
Part2:The automatic pronuclear detection system determined the pronuclei number from the TL videos of 955 embryos scored as either 1,2,and 3PN,(different from those used in Part1),and the detection rate for 2PN was calculated.
Main results and the role of chance
Part1: The sensitivities for embryologist groups 1a),1b),1c) and the automatic pronuclear detection system were 80.0%,100%,100%,100% for 2PN, 60.0%,83.3%,86.7%,100% for 0PN, 46.7%,80.0%,86.7%,10.0% for 1PN, and 73.3%,96.7%,96.7%,10.0% for 3PN.
Part2: The precision for 2PN by the automatic pronuclear detection system was 99%.
Limitations, reasons for caution
In order to further improve the performance of the automatic pronuclear detection system, further adjustment of the algorithm and more training images will be utilised.
Wider implications of the findings: The detection of 2PN by the automatic pronuclear detection system was highly reliable, and the performance of the system was comparable to that of embryologists. These first results are reassuring and support the clinical use of the system as a further aid for embryologists, in routine laboratory practice.
Trial registration number
‘not applicable’
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Affiliation(s)
- S Takeda
- Asada Ladies Clinic, Asada Institute for Reproductive Medicine, Aichi, Japan
| | - N Fukunaga
- Asada Ladies Clinic, Asada Institute for Reproductive Medicine, Aichi, Japan
| | - S Sanami
- Dai Nippon Printing Co., Ltd., Tokyo, Japan
| | - Y Tsuzuki
- Dai Nippon Printing Co., Ltd., Tokyo, Japan
| | - H Kitasaka
- Asada Ladies Clinic, Asada Institute for Reproductive Medicine, Aichi, Japan
| | - S Takeda
- Dai Nippon Printing Co., Ltd., Tokyo, Japan
| | - H Watanabe
- Asada Ladies Clinic, Asada Institute for Reproductive Medicine, Aichi, Japan
| | - Y Kida
- Asada Ladies Clinic, Asada Institute for Reproductive Medicine, Aichi, Japan
| | - F Kondou
- Asada Ladies Clinic, Asada Institute for Reproductive Medicine, Aichi, Japan
| | - Y Asada
- Asada Ladies Clinic, Asada Institute for Reproductive Medicine, Aichi, Japan
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16
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Okumura T, Azuma T, Bennett DA, Caradonna P, Chiu I, Doriese WB, Durkin MS, Fowler JW, Gard JD, Hashimoto T, Hayakawa R, Hilton GC, Ichinohe Y, Indelicato P, Isobe T, Kanda S, Kato D, Katsuragawa M, Kawamura N, Kino Y, Kubo MK, Mine K, Miyake Y, Morgan KM, Ninomiya K, Noda H, O'Neil GC, Okada S, Okutsu K, Osawa T, Paul N, Reintsema CD, Schmidt DR, Shimomura K, Strasser P, Suda H, Swetz DS, Takahashi T, Takeda S, Takeshita S, Tampo M, Tatsuno H, Tong XM, Ueno Y, Ullom JN, Watanabe S, Yamada S. Deexcitation Dynamics of Muonic Atoms Revealed by High-Precision Spectroscopy of Electronic K X Rays. Phys Rev Lett 2021; 127:053001. [PMID: 34397250 DOI: 10.1103/physrevlett.127.053001] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2021] [Accepted: 06/11/2021] [Indexed: 06/13/2023]
Abstract
We observed electronic K x rays emitted from muonic iron atoms using superconducting transition-edge sensor microcalorimeters. The energy resolution of 5.2 eV in FWHM allowed us to observe the asymmetric broad profile of the electronic characteristic Kα and Kβ x rays together with the hypersatellite K^{h}α x rays around 6 keV. This signature reflects the time-dependent screening of the nuclear charge by the negative muon and the L-shell electrons, accompanied by electron side feeding. Assisted by a simulation, these data clearly reveal the electronic K- and L-shell hole production and their temporal evolution on the 10-20 fs scale during the muon cascade process.
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Affiliation(s)
- T Okumura
- Atomic, Molecular and Optical Physics Laboratory, RIKEN, Wako 351-0198, Japan
| | - T Azuma
- Atomic, Molecular and Optical Physics Laboratory, RIKEN, Wako 351-0198, Japan
| | - D A Bennett
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - P Caradonna
- Kavli IPMU (WPI), The University of Tokyo, Kashiwa, Chiba 277-8583, Japan
| | - I Chiu
- Department of Chemistry, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - W B Doriese
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - M S Durkin
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - J W Fowler
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - J D Gard
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - T Hashimoto
- Advanced Science Research Center (ASRC), Japan Atomic Energy Agency (JAEA), Tokai 319-1184, Japan
| | - R Hayakawa
- Department of Physics, Tokyo Metropolitan University, Tokyo 192-0397, Japan
| | - G C Hilton
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - Y Ichinohe
- Department of Physics, Rikkyo University, Tokyo 171-8501, Japan
| | - P Indelicato
- Laboratoire Kastler Brossel, Sorbonne Université, CNRS, ENS-PSL Research University, Collège de France, Case 74, 4, place Jussieu, 75005 Paris, France
| | - T Isobe
- RIKEN Nishina Center, RIKEN, Wako 351-0198, Japan
| | - S Kanda
- High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 305-0801, Japan
| | - D Kato
- National Institute for Fusion Science (NIFS), Toki, Gifu 509-5292, Japan
| | - M Katsuragawa
- Kavli IPMU (WPI), The University of Tokyo, Kashiwa, Chiba 277-8583, Japan
| | - N Kawamura
- High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 305-0801, Japan
| | - Y Kino
- Department of Chemistry, Tohoku University, Sendai, Miyagi 980-8578, Japan
| | - M K Kubo
- Department of Natural Sciences, College of Liberal Arts, International Christian University, Mitaka, Tokyo 181-8585, Japan
| | - K Mine
- Kavli IPMU (WPI), The University of Tokyo, Kashiwa, Chiba 277-8583, Japan
| | - Y Miyake
- High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 305-0801, Japan
| | - K M Morgan
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - K Ninomiya
- Department of Chemistry, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - H Noda
- Department of Earth and Space Science, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - G C O'Neil
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - S Okada
- Atomic, Molecular and Optical Physics Laboratory, RIKEN, Wako 351-0198, Japan
| | - K Okutsu
- Department of Chemistry, Tohoku University, Sendai, Miyagi 980-8578, Japan
| | - T Osawa
- Materials Sciences Research Center (MSRC), Japan Atomic Energy Agency (JAEA), Tokai 319-1184, Japan
| | - N Paul
- Laboratoire Kastler Brossel, Sorbonne Université, CNRS, ENS-PSL Research University, Collège de France, Case 74, 4, place Jussieu, 75005 Paris, France
| | - C D Reintsema
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - D R Schmidt
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - K Shimomura
- High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 305-0801, Japan
| | - P Strasser
- High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 305-0801, Japan
| | - H Suda
- Department of Physics, Tokyo Metropolitan University, Tokyo 192-0397, Japan
| | - D S Swetz
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - T Takahashi
- Kavli IPMU (WPI), The University of Tokyo, Kashiwa, Chiba 277-8583, Japan
| | - S Takeda
- Kavli IPMU (WPI), The University of Tokyo, Kashiwa, Chiba 277-8583, Japan
| | - S Takeshita
- High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 305-0801, Japan
| | - M Tampo
- High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 305-0801, Japan
| | - H Tatsuno
- Department of Physics, Tokyo Metropolitan University, Tokyo 192-0397, Japan
| | - X M Tong
- Center for Computational Sciences, University of Tsukuba, Tsukuba, Ibaraki 305-8573, Japan
| | - Y Ueno
- Atomic, Molecular and Optical Physics Laboratory, RIKEN, Wako 351-0198, Japan
| | - J N Ullom
- National Institute of Standards and Technology, Boulder, Colorado 80305, USA
| | - S Watanabe
- Department of Space Astronomy and Astrophysics, Institute of Space and Astronautical Science (ISAS), Japan Aerospace Exploration Agency (JAXA), Sagamihara, Kanagawa 252-5210, Japan
| | - S Yamada
- Department of Physics, Rikkyo University, Tokyo 171-8501, Japan
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17
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Shimada A, Tsukahara T, Nomura M, Kim MS, Shimada T, Takeda S, Yamaguchi T. Determination of 135Cs/ 137Cs isotopic ratio in soil collected near Fukushima Daiichi nuclear power station through mass spectrometry. J NUCL SCI TECHNOL 2021. [DOI: 10.1080/00223131.2021.1931520] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- Asako Shimada
- Nuclear Safety Research Center, Japan Atomic Energy Agency, Ibaraki, Japan
| | - Takehiko Tsukahara
- Laboratory for Advanced Nuclear Energy, Institute of Innovative Research, Tokyo Institute of Technology, Tokyo, Japan
| | - Masao Nomura
- Laboratory for Advanced Nuclear Energy, Institute of Innovative Research, Tokyo Institute of Technology, Tokyo, Japan
| | - Min Seok Kim
- Laboratory for Advanced Nuclear Energy, Institute of Innovative Research, Tokyo Institute of Technology, Tokyo, Japan
| | - Taro Shimada
- Nuclear Safety Research Center, Japan Atomic Energy Agency, Ibaraki, Japan
| | - Seiji Takeda
- Nuclear Safety Research Center, Japan Atomic Energy Agency, Ibaraki, Japan
| | - Tetsuji Yamaguchi
- Nuclear Safety Research Center, Japan Atomic Energy Agency, Ibaraki, Japan
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Shimada A, Sawaguchi T, Takeda S. Dose Estimation of Landfill Disposal of Removed Soil Generated Outside Fukushima Prefecture. Health Phys 2021; 120:517-524. [PMID: 33760768 DOI: 10.1097/hp.0000000000001371] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
ABSTRACT Dose estimation was conducted by assuming landfill disposal of removed soil generated outside the Fukushima Prefecture by each local town and in a lump sum. Because the radioactivity of removed soil is lower than that of specified waste that was generated at Fukushima Prefecture and the radioactivity concentration is 100,000 Bq kg-1 or less, simple landfill covered with 30 cm of non-contaminated soil was used. The exposure doses of loading/unloading, transportation, and landfill workers and the public residing near the repository site were estimated. Furthermore, migration of cesium into groundwater because of precipitation and using the contaminated groundwater for drinking and agricultural water was evaluated, and exposure doses regarding farmers and the ingestion of agricultural products were estimated. It was confirmed that estimated exposure doses during landfill were less than 1 mSv y-1, and those for after landfill were 0.01 mSv y-1.
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Affiliation(s)
- Asako Shimada
- Nuclear Safety Research Center, Japan Atomic Energy Agency 2-4 Shirakara, Tokai-mura, Naka-gun, Ibaraki, Japan 319-1195
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Maruyama R, Lim K, Nguyen Q, Tsoumpra M, Takeda S, Aoki Y, Yokota T. DMD – ANIMAL MODELS & PRECLINICAL TREATMENT. Neuromuscul Disord 2020. [DOI: 10.1016/j.nmd.2020.08.215] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Kida Y, Fukunaga N, Sanami S, Watanabe H, Tsuzuki Y, Kitasaka H, Takeda S, Kondo F, Takeda S, Asada Y. IMPROVEMENT OF AN AUTOMATIC PRONUCLEAR DETECTION SYSTEM BY DEEP LEARNING TECHNOLOGY USING MULTI-SLICE IMAGES. Fertil Steril 2020. [DOI: 10.1016/j.fertnstert.2020.08.420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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21
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Watanabe H, Fukunaga N, Sanami S, Kitasaka H, Tsuzuki Y, Kida Y, Takeda S, Kondo F, Takeda S, Asada Y. COMPARISON OF PRONUCLEAR (PN) NUMBER OBSERVATIONS BASED ON EMBRYOLOGIST’S EXPERIENCE AND DETECTION BY ARTIFICAL INTELLIGENCE (AI) TRAINED WITH DEEP LEARNING TECHNOLOGY. Fertil Steril 2020. [DOI: 10.1016/j.fertnstert.2020.08.232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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22
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Kitasaka H, Fukunaga N, Sanami S, Watanabe H, Tsuzuki Y, Kida Y, Takeda S, Kondo F, Takeda S, Asada Y. INCREASING THE AMOUNT OF LEARNING DATA FOR DEEP LEARNING IS EFFECTIVE IN IMPROVING THE AUTOMATIC PRONUCLEUS NUMBER DETECTION SYSTEM FOR HUMAN EMBRYOS. Fertil Steril 2020. [DOI: 10.1016/j.fertnstert.2020.08.407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Sato R, Sasaki A, Mori Y, Komai M, Kamo S, Onuki M, Seki T, Kawabe Z, Miyajima S, Tomoshige S, Kawasaki T, Sato S, Nakamura T, Kubo N, Takeda S, Date S, Okamoto S, Boonyaritthongchai P, Thirapanmethee K, Chomnawang MT, Bongcheewin B, Nguyen TL, Nguyen HLT, Le HT, Nakamura Y, Kuramochi K. Investigation on the Epoxidation of Piperitenone, and Structure-activity Relationships of Piperitenone Oxide for Differentiation-inducing Activity. J Oleo Sci 2020; 69:951-958. [PMID: 32641605 DOI: 10.5650/jos.ess19278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Piperitenone oxide, a major chemical constituent of the essential oil of spearmint, Mentha spicata, induces differentiation in human colon cancer RCM-1 cells. In this study, piperitenone oxide and trans-piperitenone dioxide were prepared as racemic forms by epoxidation of piperitenone. The relative configuration between two epoxides in piperitenone dioxide was determined to be trans by 1H NMR analysis and nuclear Overhauser effect spectroscopy (NOESY) in conjunction with density functional theory (DFT) calculations. Optical resolution of (±)-piperitenone oxide by high-performance liquid chromatography (HPLC) using a chiral stationary phase (CSP) afforded both enantiomers with over 98% enantiomeric excess (ee). Evaluation of the differentiation-inducing activity of the synthetic compounds revealed that the epoxide at C-1 and C-6 in piperitenone oxide is important for the activity, and (+)-piperitenone oxide has stronger activity than (-)-piperitenone oxide. The results obtained in this study provide new information on the application of piperitenone oxide and spearmint for differentiation-inducing therapy. Furthermore, natural piperitenone oxide was isolated from M. spicata. The enantiomeric excess of the isolated natural piperitenone oxide was 66% ee. Epoxidation of piperitenone with hydrogen peroxide proceeded in a phosphate buffer under weak basic conditions to give (±)-piperitenone oxide. These results suggest that the nonenzymatic epoxidation of piperitenone, which causes a decrease in the enantiomeric excess of natural piperitenone oxide, is accompanied by an enzymatic epoxidation in the biosynthesis of piperitenone oxide.
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Affiliation(s)
- Ryohei Sato
- Department of Applied Biological Science, Tokyo University of Science
| | - Azusa Sasaki
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University
| | - Yuko Mori
- Department of Applied Biological Science, Tokyo University of Science
| | - Mio Komai
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University
| | - Shogo Kamo
- Department of Applied Biological Science, Tokyo University of Science
| | - Mai Onuki
- Department of Applied Biological Science, Tokyo University of Science
| | - Takafumi Seki
- Department of Applied Chemistry, Tokyo University of Science
| | - Zen Kawabe
- Department of Applied Biological Science, Tokyo University of Science
| | - Shu Miyajima
- Department of Applied Biological Science, Tokyo University of Science
| | - Shusuke Tomoshige
- Department of Applied Biological Science, Tokyo University of Science
| | | | - Shuichi Sato
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University
| | - Takako Nakamura
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University
| | - Nakao Kubo
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University
| | - Seiji Takeda
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University
| | - Shuichi Date
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University
| | - Shigehisa Okamoto
- The United Graduate School of Agricultural Sciences, Kagoshima University
| | | | | | | | | | - Thuy Linh Nguyen
- Institute for Preventive Medicine and Public Health, Hanoi Medical University
| | | | - Huong Thi Le
- Institute for Preventive Medicine and Public Health, Hanoi Medical University
| | - Yasushi Nakamura
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University.,Faculty of Letters, Kyoto Prefectural University
| | - Kouji Kuramochi
- Department of Applied Biological Science, Tokyo University of Science
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24
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Fukunaga N, Sanami S, Kitasaka H, Tsuzuki Y, Watanabe H, Kida Y, Takeda S, Asada Y. Development of an automated two pronuclei detection system on time-lapse embryo images using deep learning techniques. Reprod Med Biol 2020; 19:286-294. [PMID: 32684828 PMCID: PMC7360969 DOI: 10.1002/rmb2.12331] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2019] [Revised: 05/02/2020] [Accepted: 05/15/2020] [Indexed: 11/24/2022] Open
Abstract
PURPOSE To establish an automated pronuclei determination system by analysis using deep learning technology which is able to effectively learn with limited amount of supervised data. METHODS An algorithm was developed by explicitly incorporating human observation where the outline around pronuclei is being observed in determining the number of pronuclei. Supervised data were selected from the time-lapse images of 300 pronuclear stage embryos per class (total 900 embryos) clearly classified by embryologists as 0PN, 1PN, and 2PN. One-hundred embryos per class (a total of 300 embryos) were used for verification data. The verification data were evaluated for the performance of detection in the number of pronuclei by regarding the results consistent with the judgment of the embryologists as correct answers. RESULTS The sensitivity rates of 0PN, 1PN, and 2PN were 99%, 82%, and 99%, respectively, and the overlapping 2PN being difficult to determine by microscopic observation alone could also be appropriately assessed. CONCLUSIONS This study enabled the establishment of the automated pronuclei determination system with the precision almost equivalent to highly skilled embryologists.
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Affiliation(s)
- Noritaka Fukunaga
- Asada Ladies ClinicNagoyaJapan
- Asada Institute for Reproductive MedicineKasugaiJapan
| | - Sho Sanami
- Research & Development CenterDai Nippon Printing Co., LtdTokyoJapan
| | | | - Yuji Tsuzuki
- Research & Development CenterDai Nippon Printing Co., LtdTokyoJapan
| | | | | | - Seiji Takeda
- Research & Development CenterDai Nippon Printing Co., LtdTokyoJapan
| | - Yoshimasa Asada
- Asada Ladies ClinicNagoyaJapan
- Asada Institute for Reproductive MedicineKasugaiJapan
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25
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Mizoguchi M, Zhang Y, Kunimi M, Tanaka A, Takeda S, Takei N, Bharti V, Koyasu K, Kishimoto T, Jaksch D, Glaetzle A, Kiffner M, Masella G, Pupillo G, Weidemüller M, Ohmori K. Ultrafast Creation of Overlapping Rydberg Electrons in an Atomic BEC and Mott-Insulator Lattice. Phys Rev Lett 2020; 124:253201. [PMID: 32639753 DOI: 10.1103/physrevlett.124.253201] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2019] [Accepted: 04/20/2020] [Indexed: 06/11/2023]
Abstract
We study an array of ultracold atoms in an optical lattice (Mott insulator) excited with a coherent ultrashort laser pulse to a state where single-electron wave functions spatially overlap. Beyond a threshold principal quantum number where Rydberg orbitals of neighboring lattice sites overlap with each other, the atoms efficiently undergo spontaneous Penning ionization resulting in a drastic change of ion-counting statistics, sharp increase of avalanche ionization, and the formation of an ultracold plasma. These observations signal the actual creation of electronic states with overlapping wave functions, which is further confirmed by a significant difference in ionization dynamics between a Bose-Einstein condensate and a Mott insulator. This system is a promising platform for simulating electronic many-body phenomena dominated by Coulomb interactions in the condensed phase.
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Affiliation(s)
- M Mizoguchi
- Institute for Molecular Science, National Institutes of Natural Sciences, 38 Nishigo-Naka, Myodaiji, Okazaki, Aichi 444-8585, Japan
- SOKENDAI (The Graduate University for Advanced Studies), Myodaiji, Okazaki, Aichi 444-8585, Japan
| | - Y Zhang
- Institute for Molecular Science, National Institutes of Natural Sciences, 38 Nishigo-Naka, Myodaiji, Okazaki, Aichi 444-8585, Japan
- State Key Laboratory of Quantum Optics and Quantum Optics Devices, Institute of Laser Spectroscopy, and Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan, Shanxi 030006, China
| | - M Kunimi
- Institute for Molecular Science, National Institutes of Natural Sciences, 38 Nishigo-Naka, Myodaiji, Okazaki, Aichi 444-8585, Japan
| | - A Tanaka
- Institute for Molecular Science, National Institutes of Natural Sciences, 38 Nishigo-Naka, Myodaiji, Okazaki, Aichi 444-8585, Japan
| | - S Takeda
- Institute for Molecular Science, National Institutes of Natural Sciences, 38 Nishigo-Naka, Myodaiji, Okazaki, Aichi 444-8585, Japan
- SOKENDAI (The Graduate University for Advanced Studies), Myodaiji, Okazaki, Aichi 444-8585, Japan
| | - N Takei
- Institute for Molecular Science, National Institutes of Natural Sciences, 38 Nishigo-Naka, Myodaiji, Okazaki, Aichi 444-8585, Japan
- SOKENDAI (The Graduate University for Advanced Studies), Myodaiji, Okazaki, Aichi 444-8585, Japan
| | - V Bharti
- Institute for Molecular Science, National Institutes of Natural Sciences, 38 Nishigo-Naka, Myodaiji, Okazaki, Aichi 444-8585, Japan
| | - K Koyasu
- Institute for Molecular Science, National Institutes of Natural Sciences, 38 Nishigo-Naka, Myodaiji, Okazaki, Aichi 444-8585, Japan
- SOKENDAI (The Graduate University for Advanced Studies), Myodaiji, Okazaki, Aichi 444-8585, Japan
| | - T Kishimoto
- Department of Engineering Science and Institute for Advanced Science, University of Electro-Communications, 1-5-1 Chofugaoka, Chofu, Tokyo 182-8585, Japan
| | - D Jaksch
- Clarendon Laboratory, University of Oxford, Parks Road, Oxford OX1 3PU, United Kingdom
- Center for Quantum Technologies, National University of Singapore, 3 Science Drive 2, Singapore 117543, Singapore
| | - A Glaetzle
- Clarendon Laboratory, University of Oxford, Parks Road, Oxford OX1 3PU, United Kingdom
- Center for Quantum Technologies, National University of Singapore, 3 Science Drive 2, Singapore 117543, Singapore
| | - M Kiffner
- Clarendon Laboratory, University of Oxford, Parks Road, Oxford OX1 3PU, United Kingdom
- Center for Quantum Technologies, National University of Singapore, 3 Science Drive 2, Singapore 117543, Singapore
| | - G Masella
- icFRC and ISIS (UMR 7006), Université de Strasbourg and CNRS, 67000 Strasbourg, France
| | - G Pupillo
- icFRC and ISIS (UMR 7006), Université de Strasbourg and CNRS, 67000 Strasbourg, France
| | - M Weidemüller
- Physikalisches Institut, Universität Heidelberg, Im Neuenheimer Feld 226, 69120 Heidelberg, Germany
- Hefei National Laboratory for Physical Sciences at the Microscale and Department of Modern Physics, University of Science and Technology of China, Hefei, Anhui 230026, China and CAS Center for Excellence and Synergetic Innovation Center in Quantum Information and Quantum Physics, University of Science and Technology of China, Shanghai 201315, China
| | - K Ohmori
- Institute for Molecular Science, National Institutes of Natural Sciences, 38 Nishigo-Naka, Myodaiji, Okazaki, Aichi 444-8585, Japan
- SOKENDAI (The Graduate University for Advanced Studies), Myodaiji, Okazaki, Aichi 444-8585, Japan
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26
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Takai S, Shimada A, Sawaguchi T, Takeda S, Kimura H. DOSE ESTIMATION FOR CONTAMINATED SOIL STORAGE IN LIVING ENVIRONMENT. Radiat Prot Dosimetry 2020; 188:1-7. [PMID: 31713621 DOI: 10.1093/rpd/ncz250] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/25/2019] [Revised: 08/10/2019] [Accepted: 08/19/2019] [Indexed: 06/10/2023]
Abstract
After the Fukushima Nuclear Power Plant accident, most of radiocesium-contaminated soil generated from decontamination activities outside Fukushima prefecture has been stored at decontamination sites such as schools, parks and residential lands (storage at sites) according to the Decontamination Guidelines. However, additional exposure due to the present storage has not been evaluated. Moreover, entering storage sites, which is not restricted for storage at sites, was not considered in safety assessment conducted in the guidelines. To continue the storage and confirm the effectiveness, understanding of present possible exposures is important. In this study, we evaluated exposure doses for residents and users of storage sites based on the present situation. As a result, annual doses due to residence were 10-2 to 10-3 mSv y-1 and doses due to annual entries were of the order of 10-3 mSv y-1. Hence, we confirmed that the exposure due to present storage outside Fukushima is significantly <1 mSv y-1.
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Affiliation(s)
- Shizuka Takai
- Japan Atomic Energy Agency, 2-4 Shirakata, Tokai-mura, Ibaraki 319-1195, Japan
| | - Asako Shimada
- Japan Atomic Energy Agency, 2-4 Shirakata, Tokai-mura, Ibaraki 319-1195, Japan
| | - Takuma Sawaguchi
- Japan Atomic Energy Agency, 2-4 Shirakata, Tokai-mura, Ibaraki 319-1195, Japan
| | - Seiji Takeda
- Japan Atomic Energy Agency, 2-4 Shirakata, Tokai-mura, Ibaraki 319-1195, Japan
| | - Hideo Kimura
- Japan Atomic Energy Agency, 2-4 Shirakata, Tokai-mura, Ibaraki 319-1195, Japan
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27
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Hirano T, Kimura S, Sakamoto T, Okamoto A, Nakayama T, Matsuura T, Ikeda Y, Takeda S, Suzuki Y, Ohshima I, Sato MH. Reprogramming of the Developmental Program of Rhus javanica During Initial Stage of Gall Induction by Schlechtendalia chinensis. Front Plant Sci 2020; 11:471. [PMID: 32499792 PMCID: PMC7243852 DOI: 10.3389/fpls.2020.00471] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2019] [Accepted: 03/30/2020] [Indexed: 05/28/2023]
Abstract
Insect galls are unique organs that provide shelter and nutrients to the gall-inducing insects. Although insect galls are fascinating structures for their unique shapes and functions, the process by which gall-inducing insects induce such complex structures is not well understood. Here, we performed RNA-sequencing-based comparative transcriptomic analysis of the early developmental stage of horned gall to elucidate the early gall-inducing process carried out by the aphid, Schlechtendalia chinensis, in the Chinese sumac, Rhus javanica. There was no clear similarity in the global gene expression profiles between the gall tissue and other tissues, and the expression profiles of various biological categories such as phytohormone metabolism and signaling, stress-response pathways, secondary metabolic pathways, photosynthetic reaction, and floral organ development were dramatically altered. Particularly, master transcription factors that regulate meristem, flower, and fruit development, and biotic and abiotic stress-responsive genes were highly upregulated, whereas the expression of genes related to photosynthesis strongly decreased in the early stage of the gall development. In addition, we found that the expression of class-1 KNOX genes, whose ectopic overexpression is known to lead to the formation of de novo meristematic structures in leaf, was increased in the early development stage of gall tissue. These results strengthen the hypothesis that gall-inducing insects convert source tissues into fruit-like sink tissues by regulating the gene expression of host plants and demonstrate that such manipulation begins from the initial process of gall induction.
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Affiliation(s)
- Tomoko Hirano
- Laboratory of Cellular Dynamics, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
| | - Seisuke Kimura
- Faculty of Life Sciences, Kyoto Sangyo University, Kyoto, Japan
| | | | - Ayaka Okamoto
- Laboratory of Cellular Dynamics, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
| | - Takumi Nakayama
- Laboratory of Cellular Dynamics, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
| | - Takakazu Matsuura
- Institute of Plant Science and Resources, Okayama University, Okayama, Japan
| | - Yoko Ikeda
- Institute of Plant Science and Resources, Okayama University, Okayama, Japan
| | - Seiji Takeda
- Laboratory of Cell and Genome Biology, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
| | - Yoshihito Suzuki
- Department of Food and Life Sciences, College of Agriculture, Ibaraki University, Ibaraki, Japan
| | - Issei Ohshima
- Laboratory of Applied Entomology, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
| | - Masa H. Sato
- Laboratory of Cellular Dynamics, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
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28
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Iwano T, Yoshimura K, Inoue S, Odate T, Ogata K, Funatsu S, Tanihata H, Kondo T, Ichikawa D, Takeda S. Breast cancer diagnosis based on lipid profiling by probe electrospray ionization mass spectrometry. Br J Surg 2020; 107:632-635. [PMID: 32246473 PMCID: PMC7216899 DOI: 10.1002/bjs.11613] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Accepted: 03/08/2020] [Indexed: 12/14/2022]
Affiliation(s)
- T Iwano
- Department of Anatomy and Cell Biology, Faculty of Medicine, Yamanashi, Japan
| | - K Yoshimura
- Department of Anatomy and Cell Biology, Faculty of Medicine, Yamanashi, Japan
| | - S Inoue
- Department of Digestive , Breast and Endocrine Surgery, Yamanashi, Japan
| | - T Odate
- Department of Pathology, University of Yamanashi, Chu, Yamanashi, Japan
| | - K Ogata
- Shimadzu Corporation, Nakagyo, Kyoto, Japan
| | - S Funatsu
- Shimadzu Corporation, Nakagyo, Kyoto, Japan
| | - H Tanihata
- Shimadzu Corporation, Nakagyo, Kyoto, Japan
| | - T Kondo
- Department of Pathology, University of Yamanashi, Chu, Yamanashi, Japan
| | - D Ichikawa
- Department of Digestive , Breast and Endocrine Surgery, Yamanashi, Japan
| | - S Takeda
- Department of Anatomy and Cell Biology, Faculty of Medicine, Yamanashi, Japan
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29
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Aso R, Ogawa Y, Tamaoka T, Yoshida H, Takeda S. Visualizing Progressive Atomic Change in the Metal Surface Structure Made by Ultrafast Electronic Interactions in an Ambient Environment. Angew Chem Int Ed Engl 2019; 58:16028-16032. [PMID: 31486177 DOI: 10.1002/anie.201907679] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2019] [Revised: 08/28/2019] [Indexed: 11/07/2022]
Abstract
Understanding the atomic and molecular phenomena occurring in working catalysts and nanodevices requires the elucidation of atomic migration originating from electronic excitations. The progressive atomic dynamics on metal surface under controlled electronic stimulus in real time, space, and gas environments are visualized for the first time. By in situ environmental transmission electron microscopy, the gas molecules introduced into the biased metal nanogap could be activated by electron tunneling and caused the unpredicted atomic dynamics. The typically inactive gold was oxidized locally on the positive tip and field-evaporated to the negative tip, resulting in the atomic reconstruction on the negative tip surface. This finding of a tunneling-electron-attached-gas process will bring new insights into the design of nanostructures such as nanoparticle catalysts and quantum nanodots and will stimulate syntheses of novel nanomaterials not seen in the ambient environment.
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Affiliation(s)
- Ryotaro Aso
- The Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-0047, Japan
| | - Yohei Ogawa
- The Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-0047, Japan
- Department of Materials and Manufacturing Science, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan
| | - Takehiro Tamaoka
- The Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-0047, Japan
- Department of Materials and Manufacturing Science, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan
| | - Hideto Yoshida
- The Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-0047, Japan
| | - Seiji Takeda
- The Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-0047, Japan
- Institute for NanoScience Design, Osaka University, 1-3 machikaneyama, Toyonaka, Osaka, 560-8531, Japan
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30
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Aso R, Ogawa Y, Tamaoka T, Yoshida H, Takeda S. Visualizing Progressive Atomic Change in the Metal Surface Structure Made by Ultrafast Electronic Interactions in an Ambient Environment. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201907679] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Ryotaro Aso
- The Institute of Scientific and Industrial ResearchOsaka University 8-1 Mihogaoka, Ibaraki Osaka 567-0047 Japan
| | - Yohei Ogawa
- The Institute of Scientific and Industrial ResearchOsaka University 8-1 Mihogaoka, Ibaraki Osaka 567-0047 Japan
- Department of Materials and Manufacturing ScienceGraduate School of EngineeringOsaka University 2-1 Yamadaoka, Suita Osaka 565-0871 Japan
| | - Takehiro Tamaoka
- The Institute of Scientific and Industrial ResearchOsaka University 8-1 Mihogaoka, Ibaraki Osaka 567-0047 Japan
- Department of Materials and Manufacturing ScienceGraduate School of EngineeringOsaka University 2-1 Yamadaoka, Suita Osaka 565-0871 Japan
| | - Hideto Yoshida
- The Institute of Scientific and Industrial ResearchOsaka University 8-1 Mihogaoka, Ibaraki Osaka 567-0047 Japan
| | - Seiji Takeda
- The Institute of Scientific and Industrial ResearchOsaka University 8-1 Mihogaoka, Ibaraki Osaka 567-0047 Japan
- Institute for NanoScience DesignOsaka University 1–3 machikaneyama, Toyonaka Osaka 560-8531 Japan
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31
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Tsunedomi R, Yoshimura K, Kimura Y, Nishiyama M, Matsukuma S, Tokumitsu Y, Tomochika S, Iida M, Suzuki N, Takeda S, Yoshino S, Hazama S, Nagano H. Cancer stem-like phenotypes including immune surveillance and its responsible genes in induced liver cancer stem-like cells. Ann Oncol 2019. [DOI: 10.1093/annonc/mdz422.050] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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32
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Takeda S, Yoza M, Amano T, Ohshima I, Hirano T, Sato MH, Sakamoto T, Kimura S. Comparative transcriptome analysis of galls from four different host plants suggests the molecular mechanism of gall development. PLoS One 2019; 14:e0223686. [PMID: 31647845 PMCID: PMC6812778 DOI: 10.1371/journal.pone.0223686] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2019] [Accepted: 09/25/2019] [Indexed: 12/18/2022] Open
Abstract
Galls are plant structures generated by gall–inducing organisms including insects, nematodes, fungi, bacteria and viruses. Those made by insects generally consist of inner callus–like cells surrounded by lignified hard cells, supplying both nutrients and protection to the gall insects living inside. This indicates that gall insects hijack developmental processes in host plants to generate tissues for their own use. Although galls are morphologically diverse, the molecular mechanism for their development remains poorly understood. To identify genes involved in gall development, we performed RNA–sequencing based transcriptome analysis for leaf galls. We examined the young and mature galls of Glochidion obovatum (Phyllanthaceae), induced by the micromoth Caloptilia cecidophora (Lepidoptera: Gracillariidae), the leaf gall from Eurya japonica (Pentaphylacaceae) induced by Borboryctis euryae (Lepidoptera: Gracillariidae), and the strawberry-shaped leaf gall from Artemisia montana (Asteraceae) induced by gall midge Rhopalomyia yomogicola (Oligotrophini: Cecidomyiidae). Gene ontology (GO) analyses suggested that genes related to developmental processes are up–regulated, whereas ones related to photosynthesis are down–regulated in these three galls. Comparison of transcripts in these three galls together with the gall on leaves of Rhus javanica (Anacardiaceae), induced by the aphid Schlechtendalia chinensis (Hemiptera: Aphidoidea), suggested 38 genes commonly up–regulated in galls from different plant species. GO analysis showed that peptide biosynthesis and metabolism are commonly involved in the four different galls. Our results suggest that gall development involves common processes across gall inducers and plant taxa, providing an initial step towards understanding how they manipulate host plant developmental systems.
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Affiliation(s)
- Seiji Takeda
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
- Biotechnology Research Department, Kyoto Prefectural Agriculture Forestry and Fisheries Technology Center, Seika, Kyoto, Japan
- * E-mail: (ST); (SK)
| | - Makiko Yoza
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
| | - Taisuke Amano
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
| | - Issei Ohshima
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
| | - Tomoko Hirano
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
| | - Masa H. Sato
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
| | - Tomoaki Sakamoto
- Department of Bioresource and Environmental Sciences, Faculty of Life Sciences, Kyoto Sangyo University, Kyoto, Japan
| | - Seisuke Kimura
- Department of Bioresource and Environmental Sciences, Faculty of Life Sciences, Kyoto Sangyo University, Kyoto, Japan
- Department of Industrial Life Sciences, Faculty of Life Sciences, Kyoto Sangyo University, Kyoto, Japan
- Center for Ecological Evolutionary Developmental Biology, Kyoto Sangyo University, Kyoto, Japan
- * E-mail: (ST); (SK)
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Elhussieny A, Nogami K, Takemura F, Maruyama Y, Miyagoe-Suzuki Y, Takeda S. P.313Improvement of human induced pluripotent stem cells (hiPSCs) - based therapy of Duchenne muscular dystrophy by using mesenchymal stem cells (MSCs). Neuromuscul Disord 2019. [DOI: 10.1016/j.nmd.2019.06.427] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Miwa K, Takeda S, Iimoto T. DEVElOPMENT OF DOSE ESTIMATION SYSTEM INTEGRATING SEDIMENT MODEL FOR RECYCLING RADIOCESIUM-CONTAMINATED SOIL TO COASTAL RECLAMATION. Radiat Prot Dosimetry 2019; 184:372-375. [PMID: 31111924 DOI: 10.1093/rpd/ncz128] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Indexed: 06/09/2023]
Abstract
We have developed a dose estimation system integrating assessment methods of radionuclide dispersion in ocean for the case of recycling radiocesium-contaminated soil to coastal reclamation. Radionuclide dispersion in ocean is assessed considering dissolved radionuclide and adsorbed radionuclide on particle by sediment model (OECD/NEA). Time series of Cs-137 dispersion at Fukushima coastal area is assessed by the sediment model and result is almost same with measured value. The major exposure pathways in recycling are estimated by using result of radiocesium dispersion assessment, and internal exposure dose by marine products ingestion is sufficiently lower than external exposure dose of worker.
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Affiliation(s)
- Kazuji Miwa
- Japan Atomic Energy Agency, Ibaraki, Japan
- The University of Tokyo, Chiba, Japan
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Masuda K, Minami S, Stugaard M, Kozuma A, Takeda S, Nakayama T, Asanuma T, Nakatani S. P2477Assessment of intraventricular flow dynamics in acute heart failure studied by Vector Flow Mapping. Eur Heart J 2019. [DOI: 10.1093/eurheartj/ehz748.0808] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Background
Although left ventricular (LV) flow dynamics should be closely related to LV morphology and function, little is known about how heart failure (HF) changes it. Pathline Analysis (PA), a recently developed software based on Vector Flow Mapping (VFM, Hitachi), enables us to trace the virtual blood particles entering to the LV in diastole and being ejected in systole. We investigated the change of flow dynamics in HF induced in dogs using PA.
Methods
In 15 open-chest dogs, HF was induced by intracoronary injection of microspheres. Color Doppler images of apical long-axis view were acquired using Prosound F75 (Hitachi) before and after HF and were analyzed by PA. We calculated the ratio of the numbers of entering particles in diastole and ejected particles in systole (ejection rate) and the distance reached by the particles in diastole corrected by the LV long-axis diameter (propagation distance). Apical and basal short axis images were acquired using GE Vivid E9 and were analyzed for peak rotation and peak twist.
Results
After inducing HF, LV end-diastolic pressure increased from 6±2 to 15±5 mmHg (p<0.001) and ejection fraction (EF), apical peak rotation and peak twist decreased significantly (EF; 58±5 to 36±8%, apical peak rotation; 14±5 to 3±2 degree, peak twist; 19±5 to 6±3 degree, p<0.05, respectively). PA showed most of the entering particles to the LV were ejected in the following systole at the control stage, but in HF, a significant part of the entering particles were not ejected and remained in the LV (Figure). Ejection rate decreased from 50±11 to 26±11% (p<0.001) and the propagation distance decreased from 85±9 to 66±13% (p<0.001) after inducing HF. There were significant relationships between indices obtained by PA and EF and peak twist (Table).
Conclusion
A significant part of inflow is not ejected directly to the outflow in the next systole and remains in the LV in HF, suggesting inefficient flow dynamics.
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Affiliation(s)
- K Masuda
- Osaka University Graduate School of Medicine Division of Functional Diagnostics, Suita, Osaka, Japan
| | - S Minami
- Osaka University Graduate School of Medicine Division of Functional Diagnostics, Suita, Osaka, Japan
| | - M Stugaard
- Osaka University Graduate School of Medicine Division of Functional Diagnostics, Suita, Osaka, Japan
| | - A Kozuma
- Osaka University Graduate School of Medicine Division of Functional Diagnostics, Suita, Osaka, Japan
| | - S Takeda
- Osaka University Graduate School of Medicine Division of Functional Diagnostics, Suita, Osaka, Japan
| | - T Nakayama
- Osaka University Graduate School of Medicine Division of Functional Diagnostics, Suita, Osaka, Japan
| | - T Asanuma
- Osaka University Graduate School of Medicine Division of Functional Diagnostics, Suita, Osaka, Japan
| | - S Nakatani
- Osaka University Graduate School of Medicine Division of Functional Diagnostics, Suita, Osaka, Japan
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Machida T, Sun Y, Pyon S, Takeda S, Kohsaka Y, Hanaguri T, Sasagawa T, Tamegai T. Zero-energy vortex bound state in the superconducting topological surface state of Fe(Se,Te). Nat Mater 2019; 18:811-815. [PMID: 31209388 DOI: 10.1038/s41563-019-0397-1] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2018] [Accepted: 05/08/2019] [Indexed: 06/09/2023]
Abstract
Majorana quasiparticles in condensed matter are important for topological quantum computing1-3, but remain elusive. Vortex cores of topological superconductors may accommodate Majorana quasiparticles that appear as the Majorana bound state (MBS) at zero energy4,5. The iron-based superconductor Fe(Se,Te) possesses a superconducting topological surface state6-9 that was investigated by scanning tunnelling microscopy (STM) studies, which suggest such a zero-energy vortex bound state (ZVBS)10,11. Here we present ultrahigh energy-resolution spectroscopic imaging (SI)-STM to clarify the nature of the vortex bound states in Fe(Se,Te). We found the ZVBS at 0 ± 20 μeV, which constrained its MBS origin, and showed that some vortices host the ZVBS but others do not. We show that the fraction of vortices hosting the ZVBS decreases with increasing magnetic field and that local quenched disorders are not related to the ZVBS. Our observations elucidate the necessary conditions to realize the ZVBS, which paves the way towards controllable Majorana quasiparticles.
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Affiliation(s)
- T Machida
- RIKEN Center for Emergent Matter Science, Wako, Japan.
| | - Y Sun
- Department of Physics and Mathematics, Aoyama Gakuin University, Chuou-ku, Sagamihara, Japan
| | - S Pyon
- Department of Applied Physics, The University of Tokyo, Bunkyo-ku, Japan
| | - S Takeda
- Laboratory for Materials and Structures, Tokyo Institute of Technology, Midori-ku, Yokohama, Japan
| | - Y Kohsaka
- RIKEN Center for Emergent Matter Science, Wako, Japan
| | - T Hanaguri
- RIKEN Center for Emergent Matter Science, Wako, Japan.
| | - T Sasagawa
- Laboratory for Materials and Structures, Tokyo Institute of Technology, Midori-ku, Yokohama, Japan
| | - T Tamegai
- Department of Applied Physics, The University of Tokyo, Bunkyo-ku, Japan
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Takeda S, Mukasa K, Hui SP, Chiba H. Interaction between LDL-mimetic liposomes and acid-treated carbon nanotube electrode during Cu 2+-mediated oxidation. Biochem Biophys Res Commun 2019; 513:275-279. [PMID: 30954226 DOI: 10.1016/j.bbrc.2019.03.106] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Accepted: 03/17/2019] [Indexed: 11/16/2022]
Abstract
Oxidation of low-density lipoproteins (LDL) causes atherosclerosis. Detection of oxidation of LDL-mimetic liposomes using an electrode might serve as a convenient tool in the search of antioxidants for the prevention of atherosclerosis. This report proposes a reaction mechanism between LDL-mimetic liposomes and an acid-treated carbon nanotube (CNT) electrode. Oxidation of the liposomes, mediated by Cu2+, was monitored by the change in electrode potential, and the fluorescence intensity generated by diphenyl-1-pyrenylphosphine (DPPP) as control. The electrode potential and fluorescence intensity increased concomitantly during oxidation, followed by a gradual decrease. Although the electrical potential peaked faster than the fluorescence intensity, addition of CNT to the DPPP reaction accelerated the latter, suggesting the role of CNT as an accelerator of liposome oxidation. Atomic force microscopy showed increased binding of liposomes to CNT along with liposomal deformation. Further, binding of Cu2+ to the liposome-bound CNT surface was observed by quartz crystal microbalance. In conclusion, the interaction of liposomes with Cu2+ and CNT surface explains the rapid response of the electrode in liposome oxidation.
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Affiliation(s)
- Seiji Takeda
- Faculty of Health Sciences, Hokkaido University, Sapporo, 060-0812, Japan
| | | | - Shu-Ping Hui
- Faculty of Health Sciences, Hokkaido University, Sapporo, 060-0812, Japan.
| | - Hitoshi Chiba
- Department of Nutrition, Sapporo University of Health Sciences, Sapporo, 007-0894, Japan
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Tamaoka T, Aso R, Yoshida H, Takeda S. Reversible gas-solid reaction in an electronically-stimulated palladium nanogap. Nanoscale 2019; 11:8715-8717. [PMID: 31017153 DOI: 10.1039/c9nr00806c] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
We investigated a nanogap between a pair of palladium electrode tips with gas (nitrogen, hydrogen, and oxygen) and a biasing voltage using in situ atomic resolution environmental transmission electron microscopy (ETEM). We found an unexpected gas-solid (nitrogen-palladium) reaction that occurs on the surface of the positive electrode tip. A palladium nitride compound was synthesized with gaseous nitrogen at low pressure at room temperature. The nitridation of palladium was previously reported and predicted to occur only under high pressure and at high temperature. The reaction in ETEM apparatus was reversible with the change in the magnitude of an electric field in the nanogap. Additionally, the asymmetrical surface dynamics on the pair of electrode tips in gas (nitrogen, hydrogen, and oxygen) were revealed by ETEM observation. It is likely that the electrons in the gap induce the reversible reaction. This study has opened a new route toward creating nanoscale materials because the creation, stabilization, and annihilation of the material in a nanogap can be controlled electrically and electronically on demand for various applications.
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Affiliation(s)
- Takehiro Tamaoka
- The Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka 567-0047, Japan.
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Guiguet A, Ohshima I, Takeda S, Laurans F, Lopez-Vaamonde C, Giron D. Origin of gall-inducing from leaf-mining in Caloptilia micromoths (Lepidoptera, Gracillariidae). Sci Rep 2019; 9:6794. [PMID: 31043653 PMCID: PMC6494848 DOI: 10.1038/s41598-019-43213-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2018] [Accepted: 04/15/2019] [Indexed: 11/09/2022] Open
Abstract
In insects, the gall-inducing life-style has evolved independently many times. Several evolutionary pathways leading to this lifestyle have been proposed. While there is compelling evidence supporting surface-feeders and stem-borers as ancestral states of insect gall-inducers, an evolutionary pathway from leaf-miners remains hypothetical. Here we explored this question by comparing the developmental processes of two micromoths, a gall-inducer Caloptilia cecidophora (Lep., Gracillariidae), and its non-gall-inducing relative C. ryukyuensis. Like other Caloptilia, the first and second instars of C. cecidophora are leaf-miners and the gall is initiated inside the leaf mine by the third instar, thus suggesting leaf-mining as an ancestral, plesiomorphic state in this case. This is the first example of an insect species switching from leaf-mining to gall-inducing during larval development. The first two leaf-mining instars of C. cecidophora exhibit an absence of growth and a reduced time duration compared to C. ryukyuensis. The shortening of the duration of leaf-mining stages is apparently compensated in C. cecidophora by a larger egg size than C. ryukyuensis, and an additional larval instar during the gall phase.
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Affiliation(s)
- Antoine Guiguet
- Institut de Recherche sur la Biologie de l'Insecte, UMR 7261, CNRS/Université de Tours, UFR Sciences et Techniques, Tours, France. .,Department of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan.
| | - Issei Ohshima
- Department of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
| | - Seiji Takeda
- Cell and Genome Biology, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
| | | | - Carlos Lopez-Vaamonde
- Institut de Recherche sur la Biologie de l'Insecte, UMR 7261, CNRS/Université de Tours, UFR Sciences et Techniques, Tours, France.,INRA, UR0633 Zoologie Forestière, Orléans, France
| | - David Giron
- Institut de Recherche sur la Biologie de l'Insecte, UMR 7261, CNRS/Université de Tours, UFR Sciences et Techniques, Tours, France
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Wang C, Hosomi T, Nagashima K, Takahashi T, Zhang G, Kanai M, Zeng H, Mizukami W, Shioya N, Shimoaka T, Tamaoka T, Yoshida H, Takeda S, Yasui T, Baba Y, Aoki Y, Terao J, Hasegawa T, Yanagida T. Rational Method of Monitoring Molecular Transformations on Metal-Oxide Nanowire Surfaces. Nano Lett 2019; 19:2443-2449. [PMID: 30888179 DOI: 10.1021/acs.nanolett.8b05180] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Metal-oxide nanowires have demonstrated excellent capability in the electrical detection of various molecules based on their material robustness in liquid and air environments. Although the surface structure of the nanowires essentially determines their interaction with adsorbed molecules, understanding the correlation between an oxide nanowire surface and an adsorbed molecule is still a major challenge. Herein, we propose a rational methodology to obtain this information for low-density molecules adsorbed on metal oxide nanowire surfaces by employing infrared p-polarized multiple-angle incidence resolution spectroscopy and temperature-programmed desorption/gas chromatography-mass spectrometry. As a model system, we studied the surface chemical transformation of an aldehyde (nonanal, a cancer biomarker in breath) on single-crystalline ZnO nanowires. We found that a slight surface reconstruction, induced by the thermal pretreatment, determines the surface chemical reactivity of nonanal. The present results show that the observed surface reaction trend can be interpreted in terms of the density of Zn ions exposed on the nanowire surface and of their corresponding spatial arrangement on the surface, which promotes the reaction between neighboring adsorbed molecules. The proposed methodology will support a better understanding of complex molecular transformations on various nanostructured metal-oxide surfaces.
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Affiliation(s)
- Chen Wang
- Interdisciplinary Graduate School of Engineering Sciences , Kyushu University , 6-1 Kasuga-Koen , Kasuga , Fukuoka 816-8580 , Japan
| | - Takuro Hosomi
- Institute for Materials Chemistry and Engineering, Kyushu University , 6-1 Kasuga-Koen , Kasuga , Fukuoka 816-8580 , Japan
| | - Kazuki Nagashima
- Interdisciplinary Graduate School of Engineering Sciences , Kyushu University , 6-1 Kasuga-Koen , Kasuga , Fukuoka 816-8580 , Japan
- Institute for Materials Chemistry and Engineering, Kyushu University , 6-1 Kasuga-Koen , Kasuga , Fukuoka 816-8580 , Japan
| | - Tsunaki Takahashi
- Institute for Materials Chemistry and Engineering, Kyushu University , 6-1 Kasuga-Koen , Kasuga , Fukuoka 816-8580 , Japan
| | - Guozhu Zhang
- Institute for Materials Chemistry and Engineering, Kyushu University , 6-1 Kasuga-Koen , Kasuga , Fukuoka 816-8580 , Japan
| | - Masaki Kanai
- Institute for Materials Chemistry and Engineering, Kyushu University , 6-1 Kasuga-Koen , Kasuga , Fukuoka 816-8580 , Japan
| | - Hao Zeng
- Institute for Materials Chemistry and Engineering, Kyushu University , 6-1 Kasuga-Koen , Kasuga , Fukuoka 816-8580 , Japan
| | - Wataru Mizukami
- Interdisciplinary Graduate School of Engineering Sciences , Kyushu University , 6-1 Kasuga-Koen , Kasuga , Fukuoka 816-8580 , Japan
| | - Nobutaka Shioya
- Division of Environmental Chemistry , Institute for Chemical Research, Kyoto University , Gokasho, Uji , Kyoto 611-0011 , Japan
| | - Takafumi Shimoaka
- Division of Environmental Chemistry , Institute for Chemical Research, Kyoto University , Gokasho, Uji , Kyoto 611-0011 , Japan
| | - Takehiro Tamaoka
- The Institute of Scientific and Industrial Research, Osaka University , 8-1 Mihogaoka , Ibaraki , Osaka 567-0047 , Japan
| | - Hideto Yoshida
- The Institute of Scientific and Industrial Research, Osaka University , 8-1 Mihogaoka , Ibaraki , Osaka 567-0047 , Japan
| | - Seiji Takeda
- The Institute of Scientific and Industrial Research, Osaka University , 8-1 Mihogaoka , Ibaraki , Osaka 567-0047 , Japan
| | - Takao Yasui
- Department of Biomolecular Engineering, School of Engineering , Nagoya University , Furo-cho, Chikusa-ku, Nagoya 464-8603 , Japan
| | - Yoshinobu Baba
- Department of Biomolecular Engineering, School of Engineering , Nagoya University , Furo-cho, Chikusa-ku, Nagoya 464-8603 , Japan
| | - Yuriko Aoki
- Interdisciplinary Graduate School of Engineering Sciences , Kyushu University , 6-1 Kasuga-Koen , Kasuga , Fukuoka 816-8580 , Japan
| | - Jun Terao
- Department of Basic Science, Graduate School of Arts and Sciences , The University of Tokyo , Meguro-ku, Tokyo 153-8902 , Japan
| | - Takeshi Hasegawa
- Division of Environmental Chemistry , Institute for Chemical Research, Kyoto University , Gokasho, Uji , Kyoto 611-0011 , Japan
| | - Takeshi Yanagida
- Interdisciplinary Graduate School of Engineering Sciences , Kyushu University , 6-1 Kasuga-Koen , Kasuga , Fukuoka 816-8580 , Japan
- Institute for Materials Chemistry and Engineering, Kyushu University , 6-1 Kasuga-Koen , Kasuga , Fukuoka 816-8580 , Japan
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Kaya H, Takeda S, Kobayashi MJ, Kimura S, Iizuka A, Imai A, Hishinuma H, Kawarazaki T, Mori K, Yamamoto Y, Murakami Y, Nakauchi A, Abe M, Kuchitsu K. Comparative analysis of the reactive oxygen species-producing enzymatic activity of Arabidopsis NADPH oxidases. Plant J 2019; 98:291-300. [PMID: 30570803 DOI: 10.1111/tpj.14212] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2018] [Revised: 12/03/2018] [Accepted: 12/14/2018] [Indexed: 05/23/2023]
Abstract
Reactive oxygen species (ROS) produced by NADPH oxidases, called respiratory burst oxidase homologs (Rbohs), play crucial roles in development as well as biotic and abiotic stress responses in plants. Arabidopsis has 10 Rboh genes, AtRbohA to AtRbohJ. Five AtRbohs (AtRbohC, -D, -F, -H and -J) are synergistically activated by Ca2+ -binding and protein phosphorylation to produce ROS that play various roles in planta, although the activities of the other Rbohs remain unknown. With a heterologous expression system, we found a range of ROS-producing activity among the AtRbohs with differences up to 100 times, indicating that the required amounts of ROS are different in each situation where AtRbohs act. To specify the functions of AtRbohs involved in cell growth, we focused on AtRbohC, -H and -J, which are involved in tip growth of root hairs or pollen tubes. Ectopic expression of the root hair factor AtRbohC/ROOT HAIR DEFECTIVE 2 (RHD2) in pollen tubes restored the atrbohH atrbohJ defects in tip growth of pollen tubes. However, expression of AtRbohH or -J in root hairs did not complement the tip growth defect in the atrbohC/rhd2 mutant. Our data indicate that Rbohs possess different ranges of enzymatic activity, and that some Rbohs have evolved to carry specific functions in cell growth.
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Affiliation(s)
- Hidetaka Kaya
- Department of Applied Biological Science, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, 278-8510, Japan
- Graduate School of Agriculture, Ehime University, 3-5-7 Tarumi, Matsuyama, Ehime, 790-8566, Japan
| | - Seiji Takeda
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, 1-5 Hangi-cho, Shimogamo, Sakyo-ku, Kyoto, 606-8522, Japan
- Biotechnology Research Department, Kyoto Prefectural Agriculture Forestry and Fisheries Technology Center, Kitainayazuma Oji 74, Seika-cho, Soraku-gun, Kyoto, 619-0244, Japan
| | - Masaki J Kobayashi
- Japan International Research Center for Agricultural Sciences, 1-1 Ohwashi, Tsukuba, Ibaraki, 305-8686, Japan
| | - Sachie Kimura
- Department of Applied Biological Science, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, 278-8510, Japan
| | - Ayako Iizuka
- Department of Applied Biological Science, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, 278-8510, Japan
| | - Aya Imai
- Department of Applied Biological Science, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, 278-8510, Japan
| | - Haruka Hishinuma
- Department of Applied Biological Science, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, 278-8510, Japan
| | - Tomoko Kawarazaki
- Department of Applied Biological Science, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, 278-8510, Japan
| | - Kyoichiro Mori
- Department of Applied Biological Science, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, 278-8510, Japan
| | - Yuta Yamamoto
- Department of Applied Biological Science, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, 278-8510, Japan
| | - Yuki Murakami
- Department of Applied Biological Science, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, 278-8510, Japan
| | - Ayuko Nakauchi
- Department of Applied Biological Science, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, 278-8510, Japan
| | - Mitsutomo Abe
- Department of Biological Science, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo, 113-0033, Japan
| | - Kazuyuki Kuchitsu
- Department of Applied Biological Science, Tokyo University of Science, 2641 Yamazaki, Noda, Chiba, 278-8510, Japan
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Hirano T, Konno H, Takeda S, Dolan L, Kato M, Aoyama T, Higaki T, Takigawa-Imamura H, Sato MH. Author Correction: PtdIns(3,5)P 2 mediates root hair shank hardening in Arabidopsis. Nat Plants 2019; 5:447. [PMID: 30932014 DOI: 10.1038/s41477-019-0416-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
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Affiliation(s)
- Tomoko Hirano
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
| | - Hiroki Konno
- Nano Life Science Institute, Kanazawa University, Kanazawa, Japan
| | - Seiji Takeda
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
- Biotechnology Research Department, Kyoto Prefectural Agriculture Forestry and Fisheries Technology Center, Kyoto, Japan
| | - Liam Dolan
- Department of Plant Sciences, University of Oxford, Oxford, UK
| | - Mariko Kato
- Institute for Chemical Research, Kyoto University, Kyoto, Japan
| | - Takashi Aoyama
- Institute for Chemical Research, Kyoto University, Kyoto, Japan
| | - Takumi Higaki
- International Research Organization for Advanced Science and Technology, Kumamoto University Kurokami, Kumamoto, Japan
| | | | - Masa H Sato
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan.
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Tanaka G, Yamane T, Héroux JB, Nakane R, Kanazawa N, Takeda S, Numata H, Nakano D, Hirose A. Recent advances in physical reservoir computing: A review. Neural Netw 2019; 115:100-123. [PMID: 30981085 DOI: 10.1016/j.neunet.2019.03.005] [Citation(s) in RCA: 293] [Impact Index Per Article: 58.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2018] [Revised: 02/24/2019] [Accepted: 03/07/2019] [Indexed: 02/06/2023]
Abstract
Reservoir computing is a computational framework suited for temporal/sequential data processing. It is derived from several recurrent neural network models, including echo state networks and liquid state machines. A reservoir computing system consists of a reservoir for mapping inputs into a high-dimensional space and a readout for pattern analysis from the high-dimensional states in the reservoir. The reservoir is fixed and only the readout is trained with a simple method such as linear regression and classification. Thus, the major advantage of reservoir computing compared to other recurrent neural networks is fast learning, resulting in low training cost. Another advantage is that the reservoir without adaptive updating is amenable to hardware implementation using a variety of physical systems, substrates, and devices. In fact, such physical reservoir computing has attracted increasing attention in diverse fields of research. The purpose of this review is to provide an overview of recent advances in physical reservoir computing by classifying them according to the type of the reservoir. We discuss the current issues and perspectives related to physical reservoir computing, in order to further expand its practical applications and develop next-generation machine learning systems.
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Affiliation(s)
- Gouhei Tanaka
- Institute for Innovation in International Engineering Education, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan; Department of Electrical Engineering and Information Systems, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan.
| | | | | | - Ryosho Nakane
- Institute for Innovation in International Engineering Education, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan; Department of Electrical Engineering and Information Systems, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan
| | | | | | | | | | - Akira Hirose
- Institute for Innovation in International Engineering Education, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan; Department of Electrical Engineering and Information Systems, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8656, Japan
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Tamaoka T, Yoshida H, Takeda S. Oxidation and hydrogenation of Pd: suppression of oxidation by prolonged H 2exposure. RSC Adv 2019; 9:9113-9116. [PMID: 35517653 PMCID: PMC9062043 DOI: 10.1039/c9ra00436j] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2019] [Accepted: 03/11/2019] [Indexed: 01/01/2023] Open
Abstract
We investigate the phase transition of a Pd surface in both oxidizing and reducing environments by environmental transmission electron microscopy (ETEM). ETEM allows us to study sequential exposure of Pd to O2 and H2 in the same TEM conditions. First, under ETEM observation, oxidation occurs at step edges but it can also occur at terraces. Second, as the most important result, we observed a novel process where previous exposure to H2 suppresses new oxidation of the Pd surface. Third, we show by electron energy loss spectroscopy (EELS) that this process, suppression of oxidation by previous exposure to H2, is not due to the formation of bulk β-phase Pd hydride. We also demonstrate that this process is not present in Pt. Finally, we discuss the hypothesis to explain this phenomenon: formation of surface–Pd–hydride suppresses the new oxidation. This observation, suppression of oxidation by H2 exposure, may eventually lead to new breakthroughs. Oxidation of the Pd surface exhibits dependence on the history of pre-exposure to H2.![]()
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Affiliation(s)
- Takehiro Tamaoka
- The Institute of Scientific and Industrial Research
- Osaka University
- Ibaraki
- Japan
- Department of Materials and Manufacturing Science
| | - Hideto Yoshida
- The Institute of Scientific and Industrial Research
- Osaka University
- Ibaraki
- Japan
| | - Seiji Takeda
- The Institute of Scientific and Industrial Research
- Osaka University
- Ibaraki
- Japan
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Guiguet A, Hamatani A, Amano T, Takeda S, Lopez-Vaamonde C, Giron D, Ohshima I. Inside the horn of plenty: Leaf-mining micromoth manipulates its host plant to obtain unending food provisioning. PLoS One 2018; 13:e0209485. [PMID: 30576396 PMCID: PMC6303051 DOI: 10.1371/journal.pone.0209485] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2018] [Accepted: 12/06/2018] [Indexed: 02/06/2023] Open
Abstract
Leaves represent the main resource for herbivorous insects and their performances are mainly a function of leaf nutritional quality. Two feeding strategies are known to optimize the exploitation of leaf resources: leaf-miners that selectively feed on tissues of high nutritional quality and gall-inducers that induce the development of a new tissue showing an enhanced nutritional value. Some leaf-miners are known to also manipulate their nutritional environment, but do not affect plant development. Cases of callus proliferation in leaf-mines have been reported, however, the direct role of the insect in the formation of additional plant cells and the nutritional function of this tissue have never been established. Using an experimental approach, we show that leaf-mining larvae of micromoth, Borboryctis euryae (Lepidoptera: Gracillariidae), that grow on Eurya japonica (Pentaphylacaceae), actively induce callus proliferation within their leaf-mine at the fourth instar. We experimentally demonstrated that, at this developmental stage, the larva feeds exclusively on this newly formed tissue and feeding of the tissue is essential for completing larval stage. Phenological census revealed considerable expansion and variation of fourth instar duration caused by the continuous production of callus. We propose here the "cornucopia" hypothesis which states that the newly produced callus induced by the leaf-mining larvae provides virtually unending nourishment, which in turn allows flexible larval development time. This represents the first example of a leaf-miner manipulating plant development to its benefit, like a gall-inducer. We propose to name this life style "mine-galler".
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Affiliation(s)
- Antoine Guiguet
- Institut de Recherche sur la Biologie de l’Insecte, UMR 7261, CNRS/Université de Tours, UFR Sciences et Techniques, Tours, France
- Department of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
| | - Akihisa Hamatani
- Department of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
| | - Taisuke Amano
- Department of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
| | - Seiji Takeda
- Cell and Genome Biology, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
- Biotechnology Research Department, Kyoto Prefectural Agriculture Forestry and Fisheries Technology Center, Seika, Soraku–gun, Kyoto, Japan
| | - Carlos Lopez-Vaamonde
- Institut de Recherche sur la Biologie de l’Insecte, UMR 7261, CNRS/Université de Tours, UFR Sciences et Techniques, Tours, France
- INRA, UR0633 Zoologie Forestière, Orléans, France
| | - David Giron
- Institut de Recherche sur la Biologie de l’Insecte, UMR 7261, CNRS/Université de Tours, UFR Sciences et Techniques, Tours, France
| | - Issei Ohshima
- Department of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
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Takeda S, Ochiai K, Kagaya Y, Egusa W, Morimoto H, Sakazono S, Osaka M, Nabemoto M, Suzuki G, Watanabe M, Suwabe K. Abscisic acid-mediated developmental flexibility of stigmatic papillae in response to ambient humidity in Arabidopsis thaliana. Genes Genet Syst 2018; 93:209-220. [PMID: 30473573 DOI: 10.1266/ggs.18-00025] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
Abstract
Stigmatic papillae develop at the apex of the gynoecium and play an important role as a site of pollination. The papillae in Brassicaceae are of the dry and unicellular type, and more than 15,000 genes are expressed in the papillae; however, the molecular and physiological mechanisms of their development remain unknown. We found that the papillae in Arabidopsis thaliana change their length in response to altered ambient humidity: papillae of flowers incubated under high humidity elongated more than those under normal humidity conditions. Genetic analysis and transcriptome data suggest that an abscisic acid-mediated abiotic stress response mechanism regulates papilla length. Our data suggest a flexible regulation of papilla elongation at the post-anthesis stage, in response to abiotic stress, as an adaptation to environmental conditions.
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Affiliation(s)
- Seiji Takeda
- Laboratory of Cell and Genome Biology, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University.,Laboratory of Cell and Genome Biology, Biotechnology Research Department, Kyoto Prefectural Agriculture Forestry and Fisheries Technology Center
| | - Kohki Ochiai
- Laboratory of Cell and Genome Biology, Graduate School of Life and Environmental Sciences, Kyoto Prefectural University
| | - Yasuaki Kagaya
- Laboratory of Plant Functional Genomics, Life Science Research Center, Mie University.,Laboratory of Plant Functional Genomics, Graduate School of Regional Innovation Studies, Mie University
| | - Wataru Egusa
- Laboratory of Molecular Genetics and Breeding, Graduate School of Bioresources, Mie University
| | - Hiroaki Morimoto
- Laboratory of Molecular Genetics and Breeding, Graduate School of Bioresources, Mie University
| | - Satomi Sakazono
- Laboratory of Plant Molecular Breeding, Graduate School of Life Sciences, Tohoku University
| | - Masaaki Osaka
- Laboratory of Plant Molecular Breeding, Graduate School of Life Sciences, Tohoku University
| | - Moe Nabemoto
- Laboratory of Plant Molecular Breeding, Graduate School of Life Sciences, Tohoku University
| | - Go Suzuki
- Laboratory of Plant Molecular Genetics, Division of Natural Science, Osaka Kyoiku University
| | - Masao Watanabe
- Laboratory of Plant Molecular Breeding, Graduate School of Life Sciences, Tohoku University
| | - Keita Suwabe
- Laboratory of Molecular Genetics and Breeding, Graduate School of Bioresources, Mie University
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Hirano T, Konno H, Takeda S, Dolan L, Kato M, Aoyama T, Higaki T, Takigawa-Imamura H, Sato MH. PtdIns(3,5)P 2 mediates root hair shank hardening in Arabidopsis. Nat Plants 2018; 4:888-897. [PMID: 30390081 DOI: 10.1038/s41477-018-0277-8] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2018] [Accepted: 09/07/2018] [Indexed: 05/27/2023]
Abstract
Root hairs elongate by tip growth and simultaneously harden the shank by constructing the inner secondary cell wall layer. While much is known about the process of tip growth1, almost nothing is known about the mechanism by which root hairs harden the shank. Here we show that phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), the enzymatic product of FORMATION OF APLOID AND BINUCLEATE CELLS 1 (FAB1), is involved in the hardening of the shank in root hairs in Arabidopsis. FAB1 and PtdIns(3,5)P2 localize to the plasma membrane along the shank of growing root hairs. By contrast, phosphatidylinositol 4-phosphate 5-kinase 3 (PIP5K3) and PtdIns(4,5)P2 localize to the apex of the root hair where they are required for tip growth. Reduction of FAB1 function results in the formation of wavy root hairs while those of the wild type are straight. The localization of FAB1 in the plasma membrane of the root hair shank requires the activity of Rho-related GTPases from plants 10 (ROP10) and localization of ROP10 requires FAB1 activity. Computational modelling of root hair morphogenesis successfully reproduces the wavy root hair phenotype. Taken together, these data demonstrate that root hair shank hardening requires PtdIns(3,5)P2/ROP10 signalling.
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Affiliation(s)
- Tomoko Hirano
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
| | - Hiroki Konno
- Nano Life Science Institute, Kanazawa University, Kanazawa, Japan
| | - Seiji Takeda
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan
- Biotechnology Research Department, Kyoto Prefectural Agriculture Forestry and Fisheries Technology Center, Kyoto, Japan
| | - Liam Dolan
- Department of Plant Sciences, University of Oxford, Oxford, UK
| | - Mariko Kato
- Institute for Chemical Research, Kyoto University, Kyoto, Japan
| | - Takashi Aoyama
- Institute for Chemical Research, Kyoto University, Kyoto, Japan
| | - Takumi Higaki
- International Research Organization for Advanced Science and Technology, Kumamoto University Kurokami, Kumamoto, Japan
| | | | - Masa H Sato
- Graduate School of Life and Environmental Sciences, Kyoto Prefectural University, Kyoto, Japan.
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Ikemoto Y, Kuroda K, Ochiai A, Yamashita S, Ikuma S, Nojiri S, Itakura A, Takeda S. Prevalence and risk factors of zygotic splitting after 937 848 single embryo transfer cycles. Hum Reprod 2018; 33:1984-1991. [DOI: 10.1093/humrep/dey294] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2018] [Accepted: 09/16/2018] [Indexed: 11/14/2022] Open
Affiliation(s)
- Y Ikemoto
- Department of Obstetrics and Gynecology, Juntendo University Faculty of Medicine, Hongo 2-1-1, Bunkyoku, Tokyo, Japan
| | - K Kuroda
- Department of Obstetrics and Gynecology, Juntendo University Faculty of Medicine, Hongo 2-1-1, Bunkyoku, Tokyo, Japan
- Center for Reproductive Medicine and Implantation Research, Sugiyama Clinic Shinjuku, Nishi-shinjuku 1-19-6, Shinjuku-ku, Tokyo, Japan
| | - A Ochiai
- Department of Obstetrics and Gynecology, Juntendo University Faculty of Medicine, Hongo 2-1-1, Bunkyoku, Tokyo, Japan
| | - S Yamashita
- Department of Obstetrics and Gynecology, Juntendo University Faculty of Medicine, Hongo 2-1-1, Bunkyoku, Tokyo, Japan
- Department of Obstetrics and Gynecology, Oita University, Faculty of Medicine, Idaigaoka 1-1, Hasama-machi, Yufu-shi, Oita, Japan
| | - S Ikuma
- Department of Obstetrics and Gynecology, Juntendo University Faculty of Medicine, Hongo 2-1-1, Bunkyoku, Tokyo, Japan
| | - S Nojiri
- Medical Technology Innovation Center, Juntendo University, Hongo 2-1-1, Bunkyoku, Tokyo, Japan
- Clinical Research and Trial Center, Juntendo University Hospital, Hongo 2-1-1, Bunkyoku, Tokyo, Japan
| | - A Itakura
- Department of Obstetrics and Gynecology, Juntendo University Faculty of Medicine, Hongo 2-1-1, Bunkyoku, Tokyo, Japan
| | - S Takeda
- Department of Obstetrics and Gynecology, Juntendo University Faculty of Medicine, Hongo 2-1-1, Bunkyoku, Tokyo, Japan
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Takai S, Sawaguchi T, Takeda S. Dose Estimation in Recycling of Decontamination Soil Resulting From The Fukushima NPS Accident For Road Embankments. Health Phys 2018; 115:439-447. [PMID: 30148809 DOI: 10.1097/hp.0000000000000904] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Since the Fukushima nuclear power station accident, large quantities of radiocesium-contaminated soil generated from decontamination activities have been stored in Fukushima prefecture. To complete the final disposal of decontamination soil, reducing the disposal volume through recycling can prove effective. The Ministry of the Environment of Japan has developed a policy of handling low-activity decontamination soil as recycled materials under the management of public authority. The recycling is limited to civil engineering structures in public projects, such as road embankments and coastal levees. However, there has been no practical review or safety assessment of decontamination soil recycling. In this study, to contribute to guideline development for decontamination soil recycling by the Ministry of the Environment, dose estimation was considered as a way of ensuring that the use of recycled decontamination soil for road embankments was safe. First, based on Japanese construction standards, additional doses to workers and the public in construction and service (e.g., use of a road embankment) scenarios were evaluated. From the result, the radioactive cesium concentration level of recycled materials that would result in all additional doses meeting the radiation criterion of 1 mSv y was derived to be 6,000 Bq kg. Then, construction conditions were reviewed to reduce additional doses to the public in a service scenario. To confine doses to the public to below 10 μSv y based on the derived radioactivity level, an additional layer of soil slope protection of 40 cm or more was needed. Finally, additional doses expected in a disaster scenario were confirmed to be below 1 mSv y based on the derived radioactivity level, an additional layer of soil slope protection of 40 cm or more was needed. Finally, additional doses expected in a disaster scenario were confirmed to be below 1 mSv y based on the derived radioactivity level.
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Affiliation(s)
- Shizuka Takai
- 1Nuclear Safety Research Center, Japan Atomic Energy Agency, 2-4 Shirakata, Tokai-mura, Naka-gun, Ibaraki 319-1195, Japan
| | | | - Seiji Takeda
- Nuclear Safety Research Center, Japan Atomic Energy Agency, 2-4 Shirakata, Tokai-mura, Naka-gun, Ibaraki 319-1195, Japan
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50
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Nakayama T, Kuru S, Komaki H, Takeda S. DMD CLINICAL THERAPIES I. Neuromuscul Disord 2018. [DOI: 10.1016/j.nmd.2018.06.149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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