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Hussain A, Mian SA, Ahmed E, Jang J. Orchestrating the impact of antisites and vacancy defects on the elastic and optoelectronic properties of boron arsenide. J Mol Model 2023; 29:393. [PMID: 38041727 DOI: 10.1007/s00894-023-05791-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2023] [Accepted: 11/20/2023] [Indexed: 12/03/2023]
Abstract
CONTEXT Cubic boron arsenide (c-BAs), a semiconducting material with ultra-high thermal conductivity and carrier mobilities, has been studied using first-principles calculation. This study examined the elastic and optoelectronic properties of c-BAs. The challenge of subphase boron (B) formation in bulk form owing to the volatile nature of arsenic (As) makes it mandatory to calculate its optoelectronic properties, by producing vacancies and antisite defects with BAs (As atom on a B site) and AsB (B atom on an As site). The mechanical properties including bulk (B), shear (G) moduli, and Poison's ratio of all the systems were studied. It was found that mechanical instability of the structure is observed for the overall vacancy creation, arsenic substitution, and mutual antisite defects. Further, pristine c-BAs showed an indirect bandgap of 1.48 eV. Defect formation reduces the bandgap and shifts the absorption peaks, which improves the overall optoelectronic properties of the host material. In addition, B vacancy formation shows the maximum optical absorption and reflectivity and low energy loss, suggesting its potential applications for optoelectronic devices. The obtained anticipated data from this study is for the optoelectronic and elastic properties of c-BAs, for the device applications in photonics and electronics. METHOD In this paper, the elastic and optoelectronic properties of the pristine and defected c-BAs were systematically investigated using the Spanish Initiative for Electronic Simulations with Thousands of Atoms (SIESTA). The SIESTA program uses pseudopotentials in the norm-conserving nonlocal forms and pseudo-atomic orbital (PAO) basis set with a double-zeta potential (DZP) which are fundamental for calculating the Hamiltonian and overlap matrices in O(N) operations.
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Affiliation(s)
- Akbar Hussain
- Department of Physics, University of Peshawar, Peshawar, Pakistan
| | | | - Ejaz Ahmed
- Department of Physics, Abdul Wali Khan University Mardan, Mardan, Pakistan
| | - Joonkyung Jang
- Department of Nano Energy Engineering, Pusan National University, Busan, Republic of Korea.
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Mian SA, Hussain A, Basit A, Rahman G, Ahmed E, Jang J. Molecular modeling and simulation of transition metal-doped molybdenum disulfide biomarkers in exhaled gases for early detection of lung cancer. J Mol Model 2023; 29:225. [PMID: 37402994 DOI: 10.1007/s00894-023-05638-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Accepted: 06/27/2023] [Indexed: 07/06/2023]
Abstract
BACKGROUND The presence of volatile organic compounds (VOCs) in the exhaled breath of lung cancer patients is the only available source for detecting the disease at its initial stage. Exhaled breath analysis depends purely on the performance of the biosensors. The interaction between VOCs and pristine MoS2 is repulsive in nature. Therefore, modifying MoS2 via surficial adsorption of the transition metal nickel is of prime importance. The surficial interaction of six VOCs with Ni-doped MoS2 led to substantial variations in the structural and optoelectronic properties compared to those of the pristine monolayer. The remarkable improvement in the conductivity, thermostability, good sensing response, and recovery time of the sensor exposed to six VOCs revealed that a Ni-doped MoS2 exhibits impressive properties for the detection of exhaled gases. Different temperatures have a significant impact on the recovery time. Humidity has no effect on the detection of exhaled gases upon exposure to VOCs. The obtained results may encourage the use of exhaled breath sensors by experimentalists and oncologists to enable potential advancements in lung cancer detection. METHODS The surface adsorption of transition metal and its interaction with volatile organic compounds on a MoS2 surface was studied by using Spanish Initiative for Electronic Simulations with Thousands of Atoms (SIESTA). The pseudopotentials used in the SIESTA calculations are norm-conserving in their fully nonlocal forms. The atomic orbitals with finite support were used as a basis set, allowing unlimited multiple-zeta and angular momenta, polarization, and off-site orbitals. These basis sets are the key for calculating the Hamiltonian and overlap matrices in O(N) operations. The present hybrid density functional theory (DFT) is a combination of PW92 and RPBE methods. Additionally, the DFT+U approach was employed to accurately ascertain the coulombic repulsion in the transition elements.
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Affiliation(s)
| | - Akbar Hussain
- Department of Physics, University of Peshawar, Peshawar, Pakistan
| | - Abdul Basit
- Department of Physics, University of Peshawar, Peshawar, Pakistan
| | - Gul Rahman
- Institute of Chemical Sciences, University of Peshawar, Peshawar, Pakistan
| | - Ejaz Ahmed
- Department of Physics, Abdul Wali Khan University, Mardan, Pakistan
| | - Joonkyung Jang
- Department of Nano Energy Engineering, Pusan National University, Busan, Republic of Korea.
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Hussain A, Rauf A, Ahmed E, Khan MS, Mian SA, Jang J. Modulating Optoelectronic and Elastic Properties of Anatase TiO2 for Photoelectrochemical Water Splitting. Molecules 2023; 28:molecules28073252. [PMID: 37050015 PMCID: PMC10096401 DOI: 10.3390/molecules28073252] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Revised: 04/03/2023] [Accepted: 04/03/2023] [Indexed: 04/09/2023] Open
Abstract
Titanium dioxide (TiO2) has been investigated for solar-energy-driven photoelectrical water splitting due to its suitable band gap, abundance, cost savings, environmental friendliness, and chemical stability. However, its poor conductivity, weak light absorption, and large indirect bandgap (3.2 eV) has limited its application in water splitting. In this study, we precisely targeted these limitations using first-principle techniques. TiO2 only absorbs near-ultraviolet radiation; therefore, the substitution (2.1%) of Ag, Fe, and Co in TiO2 significantly altered its physical properties and shifted the bandgap from the ultraviolet to the visible region. Cobalt (Co) substitution in TiO2 resulted in high absorption and photoconductivity and a low bandgap energy suitable for the reduction in water without the need for external energy. The calculated elastic properties of Co-doped TiO2 indicate the ductile nature of the material with a strong average bond strength. Co-doped TiO2 exhibited fewer microcracks with a mechanically stable composition.
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Affiliation(s)
- Akbar Hussain
- Department of Physics, University of Peshawar, Peshawar 25120, Pakistan
| | - Abdur Rauf
- Department of Physics, University of Peshawar, Peshawar 25120, Pakistan
| | - Ejaz Ahmed
- Department of Physics, Abdul Wali Khan University, Mardan 23200, Pakistan
| | - Muhammad Saleem Khan
- Department of Chemical Engineering, NFC Institute of Engineering & Technology, Multan 60000, Pakistan
| | | | - Joonkyung Jang
- Department of Nano Energy Engineering, Pusan National University, Busan 46241, Republic of Korea
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Mian SA, Khan SU, Hussain A, Rauf A, Ahmed E, Jang J. Molecular Modelling of Optical Biosensor Phosphorene-Thioguanine for Optimal Drug Delivery in Leukemia Treatment. Cancers (Basel) 2022; 14:cancers14030545. [PMID: 35158813 PMCID: PMC8833433 DOI: 10.3390/cancers14030545] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2021] [Revised: 01/14/2022] [Accepted: 01/19/2022] [Indexed: 02/04/2023] Open
Abstract
Simple Summary Nanocarriers have been used to solve the problems associated with conventional antitumor drug delivery systems, including no specificity, severe side effects, burst release and damaging the normal cells. It improves the bioavailability and therapeutic efficiency of antitumor drugs, while providing preferential accumulation at the target site. Various 2D nanomaterials such as graphene, MoS2, and WSe2 have been used as nanocarrier. The recent discovery of phosphorene has introduced new possibilities in designing a sensible drug delivery system, due to low cytotoxicity, biocompatibility, high surface to volume ratio, which can increase its drug loading capacity. The biodegradation of phosphorene inside the human body produces non-toxic intermediates, like phosphate. Phosphate is necessary for the formation of bone and teeth. Phosphate is also used by the cell for energy, cell membranes, and DNA (deoxyribonucleic acid). Therefore, phosphorene nanocarrier is not harmful, especially for the treatment of cancer in vivo applications. Abstract Thioguanine is an anti-cancer drug used for the treatment of leukemia. However, thioguanine has weak aqueous solubility and low biocompatibility, which limits its performance in the treatment of cancer. In the present work, these inadequacies were targeted using density functional theory-based simulations. Three stable configurations were obtained for the adsorption of thioguanine molecules on the phosphorene surface, with adsorption energies in the range of −76.99 to −38.69 kJ/mol, indicating physisorption of the drug on the phosphorene surface. The calculated bandgap energies of the individual and combined geometries of phosphorene and thioguanine were 0.97 eV, 2.81 eV and 0.91 eV, respectively. Owing to the physisorption of the drug molecule on the phosphorene surface, the bandgap energy of the material had a direct impact on optical conductivity, which was significantly altered. All parameters that determine the potential ability for drug delivery were calculated, such as the dipole moment, chemical hardness, chemical softness, chemical potential, and electrophilicity index. The higher dipole moment (1.74 D) of the phosphorene–thioguanine complex reflects its higher biodegradability, with no adverse physiological effects.
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Affiliation(s)
- Shabeer Ahmad Mian
- Department of Physics, University of Peshawar, Peshawar 25120, Pakistan; (S.U.K.); (A.H.); (A.R.)
- Correspondence: (S.A.M.); (J.J.)
| | - Shafqat Ullah Khan
- Department of Physics, University of Peshawar, Peshawar 25120, Pakistan; (S.U.K.); (A.H.); (A.R.)
| | - Akbar Hussain
- Department of Physics, University of Peshawar, Peshawar 25120, Pakistan; (S.U.K.); (A.H.); (A.R.)
| | - Abdur Rauf
- Department of Physics, University of Peshawar, Peshawar 25120, Pakistan; (S.U.K.); (A.H.); (A.R.)
| | - Ejaz Ahmed
- Department of Physics, Abdul Wali Khan University Mardan, Mardan 23200, Pakistan;
| | - Joonkyung Jang
- Department of Nano Energy Engineering, Pusan National University, Pusan 46241, Korea
- Correspondence: (S.A.M.); (J.J.)
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Ilyas M, Mian SA, Rauf A, Ahmed E, Rahman G, Sannyal A, Jang J. Stimulated reversal of the strong adhesion of catechol onto a silica surface. B KOREAN CHEM SOC 2021. [DOI: 10.1002/bkcs.12454] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Muhammad Ilyas
- Department of Physics University of Peshawar Peshawar Pakistan
| | | | - Abdur Rauf
- Department of Physics Islamia College University Peshawar Pakistan
| | - Ejaz Ahmed
- Department of Physics Abdul Wali Khan University Mardan Pakistan
| | - Gul Rahman
- Institute of Chemical Sciences University of Peshawar Peshawar Pakistan
| | - Arindam Sannyal
- Department of Nanoenergy Engineering Pusan National University Busan South Korea
| | - Joonkyung Jang
- Department of Nanoenergy Engineering Pusan National University Busan South Korea
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Rauf A, Adil M, Mian SA, Rahman G, Ahmed E, Mohy Ud Din Z, Qun W. Tuning the optoelectronic properties of hematite with rhodium doping for photoelectrochemical water splitting using density functional theory approach. Sci Rep 2021; 11:41. [PMID: 33420147 PMCID: PMC7794378 DOI: 10.1038/s41598-020-78824-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Accepted: 11/19/2020] [Indexed: 11/23/2022] Open
Abstract
Hematite (Fe2O3) is one of the best candidates for photoelectrochemical water splitting due to its abundance and suitable bandgap. However, its efficiency is mostly impeded due to the intrinsically low conductivity and poor light absorption. In this study, we targeted this intrinsic behavior to investigate the thermodynamic stability, photoconductivity and optical properties of rhodium doped hematite using density functional theory. The calculated formation energy of pristine and rhodium doped hematite was − 4.47 eV and − 5.34 eV respectively, suggesting that the doped material is thermodynamically more stable. The DFT results established that the bandgap of doped hematite narrowed down to the lower edge (1.61 eV) in the visible region which enhanced the optical absorption and photoconductivity of the material. Moreover, doped hematite has the ability to absorb a broad spectrum (250–800) nm. The enhanced optical absorption boosted the photocurrent and incident photon to current efficiency. The calculated results also showed that the incorporation of rhodium in hematite induced a redshift in optical properties.
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Affiliation(s)
- Abdur Rauf
- Department of Physics, University of Peshawar, Peshawar, 25120, Pakistan.,Department of Physics, Islamia College University, Peshawar, 25120, Pakistan
| | - Muhammad Adil
- Department of Physics, Islamia College University, Peshawar, 25120, Pakistan
| | - Shabeer Ahmad Mian
- Department of Physics, University of Peshawar, Peshawar, 25120, Pakistan.
| | - Gul Rahman
- Institute of Chemical Sciences, University of Peshawar, Peshawar, 25120, Pakistan
| | - Ejaz Ahmed
- Department of Physics, Abdul Wali Khan University, Mardan, Pakistan
| | - Zia Mohy Ud Din
- Department of Mechatronic and Biomedical Engineering, Air University Islamabad, Islamabad, Pakistan
| | - Wei Qun
- Department of Biomedical Engineering, School of Medicine, Keimyung University, Daegu, Republic of Korea.
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Rouault-Pierre K, Mian SA, Goulard M, Abarrategi A, Di Tulio A, Smith AE, Mohamedali A, Best S, Nloga AM, Kulasekararaj AG, Ades L, Chomienne C, Fenaux P, Dosquet C, Mufti GJ, Bonnet D. Preclinical modeling of myelodysplastic syndromes. Leukemia 2017; 31:2702-2708. [PMID: 28663577 PMCID: PMC5729336 DOI: 10.1038/leu.2017.172] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2017] [Revised: 04/25/2017] [Accepted: 05/23/2017] [Indexed: 12/12/2022]
Abstract
Myelodysplastic syndromes (MDS) represent a heterogeneous group of hematological clonal disorders. Here, we have tested the bone marrow (BM) cells from 38 MDS patients covering all risk groups in two immunodeficient mouse models: NSG and NSG-S. Our data show comparable level of engraftment in both models. The level of engraftment was patient specific with no correlation to any specific MDS risk group. Furthermore, the co-injection of mesenchymal stromal cells (MSCs) did not improve the level of engraftment. Finally, we have developed an in vitro two-dimensional co-culture system as an alternative tool to in vivo. Using our in vitro system, we have been able to co-culture CD34+ cells from MDS patient BM on auto- and/or allogeneic MSCs over 4 weeks with a fold expansion of up to 600 times. More importantly, these expanded cells conserved their MDS clonal architecture as well as genomic integrity.
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Affiliation(s)
- K Rouault-Pierre
- Haematopoietic Stem Cell Laboratory, The Francis Crick Institute, London, UK
| | - S A Mian
- Haematopoietic Stem Cell Laboratory, The Francis Crick Institute, London, UK
- King’s College London School of Medicine, Department of Haematological Medicine, London, UK
| | - M Goulard
- INSERM, UMRS1131–University Paris Diderot, Saint Louis Hospital, Paris, France
| | - A Abarrategi
- Haematopoietic Stem Cell Laboratory, The Francis Crick Institute, London, UK
| | - A Di Tulio
- Haematopoietic Stem Cell Laboratory, The Francis Crick Institute, London, UK
| | - A E Smith
- King’s College London School of Medicine, Department of Haematological Medicine, London, UK
- King’s College Hospital, Department of Haematology, London, UK
| | - A Mohamedali
- King’s College London School of Medicine, Department of Haematological Medicine, London, UK
| | - S Best
- King’s College London School of Medicine, Department of Haematological Medicine, London, UK
| | - A-M Nloga
- Senior Haematology Department, Saint Louis Hospital, APHP, Paris, France
| | | | - L Ades
- Senior Haematology Department, Saint Louis Hospital, APHP, Paris, France
| | - C Chomienne
- INSERM, UMRS1131–University Paris Diderot, Saint Louis Hospital, Paris, France
- Cell Biology Department, Saint Louis Hospital, APHP, Paris, France
| | - P Fenaux
- INSERM, UMRS1131–University Paris Diderot, Saint Louis Hospital, Paris, France
- Senior Haematology Department, Saint Louis Hospital, APHP, Paris, France
| | - C Dosquet
- INSERM, UMRS1131–University Paris Diderot, Saint Louis Hospital, Paris, France
- Cell Biology Department, Saint Louis Hospital, APHP, Paris, France
| | - G J Mufti
- King’s College London School of Medicine, Department of Haematological Medicine, London, UK
- King’s College Hospital, Department of Haematology, London, UK
| | - D Bonnet
- Haematopoietic Stem Cell Laboratory, The Francis Crick Institute, London, UK
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Ajmal M, Ali T, Adil Khan M, Ahmad S, Ahmad Mian S, Waheed A, Ali S. Structural and optical properties of La 2 O 3 :Ho 3+ and La(OH) 3 :Ho 3+ crystalline particles. ACTA ACUST UNITED AC 2017. [DOI: 10.1016/j.matpr.2017.04.093] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Mian SA, Khan Y, Ahmad U, Khan MA, Rahman G, Ali S. Investigating the adsorption mechanism of glycine in comparison with catechol on cristobalite surface using density functional theory for bio-adhesive materials. RSC Adv 2016. [DOI: 10.1039/c6ra20683b] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Amino acid proteins exist in Mussel's adhesive (mefp's) of which glycine has a significant amount. A density functional theory simulation study was performed in a belief that all the proteins in mefp's are responsible for the versatile adhesion.
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Affiliation(s)
- Shabeer Ahmad Mian
- Department of Physics
- University of Peshawar
- 25120 Peshawar
- Pakistan
- Department of Physics
| | - Younas Khan
- Department of Physics
- University of Peshawar
- 25120 Peshawar
- Pakistan
| | - Uzair Ahmad
- Department of Physics
- Islamia College Peshawar
- 25120 Peshawar
- Pakistan
| | | | - Gul Rahman
- Institute of Chemical Sciences
- University of Peshawar
- 25120 Peshawar
- Pakistan
| | - Shahid Ali
- Department of Physics
- University of Peshawar
- 25120 Peshawar
- Pakistan
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Mian SA, Yang LM, Saha LC, Ahmed E, Ajmal M, Ganz E. A fundamental understanding of catechol and water adsorption on a hydrophilic silica surface: exploring the underwater adhesion mechanism of mussels on an atomic scale. Langmuir 2014; 30:6906-14. [PMID: 24835420 DOI: 10.1021/la500800f] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Mussels have a remarkable ability to bond to solid surfaces under water. From a microscopic perspective, the first step of this process is the adsorption of dopa molecules to the solid surface. In fact, it is the catechol part of the dopa molecule that is interacting with the surface. These molecules are able to make reversible bonds to a wide range of materials, even underwater. Previous experimental and theoretical efforts have produced only a limited understanding of the mechanism and quantitative details of the competitive adsorption of catechol and water on hydrophilic silica surfaces. In this work, we uncover the nature of this competitive absorption by atomic scale modeling of water and catechol adsorbed at the geminal (001) silica surface using density functional theory calculations. We find that catechol molecules displace preadsorbed water molecules and bond directly on the silica surface. Using molecular dynamics simulations, we observe this process in detail. We also calculate the interaction force as a function of distance, and observe a maximum of 0.5 nN of attraction. The catechol has a binding energy of 23 kcal/mol onto the silica surface with adsorbed water molecules.
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Affiliation(s)
- Shabeer Ahmad Mian
- Department of Nanomaterials Engineering, Pusan National University , Miryang, 627-706, Republic of Korea
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