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Huang P, Hameed R, Abbas M, Balooch S, Alharthi B, Du Y, Abbas A, Younas A, Du D. Integrated omic techniques and their genomic features for invasive weeds. Funct Integr Genomics 2023; 23:44. [PMID: 36680630 DOI: 10.1007/s10142-023-00971-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Revised: 01/01/2023] [Accepted: 01/11/2023] [Indexed: 01/22/2023]
Abstract
Many emerging invasive weeds display rapid adaptation against different stressful environments compared to their natives. Rapid adaptation and dispersal habits helped invasive populations have strong diversity within the population compared to their natives. Advances in molecular marker techniques may lead to an in-depth understanding of the genetic diversity of invasive weeds. The use of molecular techniques is rapidly growing, and their implications in invasive weed studies are considered powerful tools for genome purposes. Here, we review different approach used multi-omics by invasive weed studies to understand the functional structural and genomic changes in these species under different environmental fluctuations, particularly, to check the accessibility of advance-sequencing techniques used by researchers in genome sequence projects. In this review-based study, we also examine the importance and efficiency of different molecular techniques in identifying and characterizing different genes, associated markers, proteins, metabolites, and key metabolic pathways in invasive and native weeds. Use of these techniques could help weed scientists to further reduce the knowledge gaps in understanding invasive weeds traits. Although these techniques can provide robust insights about the molecular functioning, employing a single omics platform can rarely elucidate the gene-level regulation and the associated real-time expression of weedy traits due to the complex and overlapping nature of biological interactions. We conclude that different multi-omic techniques will provide long-term benefits in launching new genome projects to enhance the understanding of invasive weeds' invasion process.
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Affiliation(s)
- Ping Huang
- Institute of Environment and Ecology, School of Environment and Safety Engineering, Jiangsu University, Zhenjiang, 212013, People's Republic of China
| | - Rashida Hameed
- Institute of Environment and Ecology, School of Environment and Safety Engineering, Jiangsu University, Zhenjiang, 212013, People's Republic of China
| | - Manzer Abbas
- School of Agriculture, Forestry and Food Engineering, Yibin University, Yibin, 644000, Sichuan Province, People's Republic of China
| | - Sidra Balooch
- Institute of Botany, Bahauddin Zakariya University, Multan, Punjab, Pakistan
| | - Badr Alharthi
- Department of Biology, University College of Al Khurmah, Taif University, PO. Box 11099, Taif, 21944, Saudi Arabia
| | - Yizhou Du
- Faculty of Engineering, School of Computer Science, University of Sydney, Sydney, New South Wales, Australia
| | - Adeel Abbas
- Institute of Environment and Ecology, School of Environment and Safety Engineering, Jiangsu University, Zhenjiang, 212013, People's Republic of China.
| | - Afifa Younas
- Department of Botany, Lahore College for Women University, Lahore, Pakistan
| | - Daolin Du
- Institute of Environment and Ecology, School of Environment and Safety Engineering, Jiangsu University, Zhenjiang, 212013, People's Republic of China.
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Huang P, He L, Abbas A, Hussain S, Hussain S, Du D, Hafeez MB, Balooch S, Zahra N, Ren X, Rafiq M, Saqib M. Seed Priming with Sorghum Water Extract Improves the Performance of Camelina ( Camelina sativa (L.) Crantz.) under Salt Stress. Plants (Basel) 2021; 10:749. [PMID: 33921328 PMCID: PMC8069245 DOI: 10.3390/plants10040749] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/18/2021] [Revised: 02/13/2021] [Accepted: 02/20/2021] [Indexed: 12/02/2022]
Abstract
Seed priming with sorghum water extract (SWE) enhances crop tolerance to salinity stress; however, the application of SWE under salinity for camelina crop has not been documented so far. This study evaluated the potential role of seed priming with SWE in improving salt stress tolerance in camelina. Primed (with 5% SWE and distilled water-hydropriming) and nonprimed seeds were sown under control (no salt) and salt stress (10 dS m-1) conditions. Salinity reduced camelina's emergence and growth, while seed priming with SWE improved growth under control and stress conditions. Under salt stress, seed priming with SWE enhanced emergence percentage (96.98%), increased root length (82%), shoot length (32%), root dry weight (75%), shoot dry weight (33%), α-amylase activity (66.43%), chlorophyll content (60-92%), antioxidant enzymes activity (38-171%) and shoot K+ ion (60%) compared with nontreated plants. Similarly, under stress conditions, hydrogen peroxide, malondialdehyde (MDA) content, and shoot Na+ ion were reduced by 60, 31, and 40% by seed priming with SWE, respectively, over the nonprimed seeds. Therefore, seed priming with SWE may be used to enhance the tolerance against salt stress in camelina.
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Affiliation(s)
- Ping Huang
- Institute of Environment and Ecology, School of Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, China; (P.H.); (L.H.)
| | - Lili He
- Institute of Environment and Ecology, School of Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, China; (P.H.); (L.H.)
| | - Adeel Abbas
- Institute of Environment and Ecology, School of Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, China; (P.H.); (L.H.)
| | - Sadam Hussain
- College of Agronomy, Northwest A&F University, Yangling 712100, China or (S.H.); or (M.B.H.); or (X.R.)
| | - Saddam Hussain
- Department of Agronomy, University of Agriculture, Faisalabad 38040, Pakistan;
| | - Daolin Du
- Institute of Environment and Ecology, School of Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, China; (P.H.); (L.H.)
| | - Muhammad Bilal Hafeez
- College of Agronomy, Northwest A&F University, Yangling 712100, China or (S.H.); or (M.B.H.); or (X.R.)
- Department of Agronomy, University of Agriculture, Faisalabad 38040, Pakistan;
| | - Sidra Balooch
- Department of Botany, Ghazi University D.G, Khan 32200, Pakistan; or
| | - Noreen Zahra
- Department of Botany, University of Agriculture, Faisalabad 38040, Pakistan; or
| | - Xiaolong Ren
- College of Agronomy, Northwest A&F University, Yangling 712100, China or (S.H.); or (M.B.H.); or (X.R.)
| | - Muhammad Rafiq
- Agronomic Research Institute, Ayub Agricultural Research Institute, Faisalabad 38040, Pakistan or (M.R.); or (M.S.)
| | - Muhammad Saqib
- Agronomic Research Institute, Ayub Agricultural Research Institute, Faisalabad 38040, Pakistan or (M.R.); or (M.S.)
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