Single-cell and spatial transcriptome analyses revealed cell heterogeneity and immune environment alternations in metastatic axillary lymph nodes in breast cancer

BACKGROUND

Tumor heterogeneity plays essential roles in developing cancer therapies, including therapies for breast cancer (BC). In addition, it is also very important to understand the relationships between tumor microenvironments and the systematic immune environment.

METHODS

Here, we performed single-cell, VDJ sequencing and spatial transcriptome analyses on tumor and adjacent normal tissue as well as axillar lymph nodes (LNs) and peripheral blood mononuclear cells (PBMCs) from 8 BC patients.

RESULTS

We found that myeloid cells exhibited environment-dependent plasticity, where a group of macrophages with both M1 and M2 signatures possessed high tumor specificity spatially and was associated with worse patient survival. Cytotoxic T cells in tumor sites evolved in a separate path from those in the circulatory system. T cell receptor (TCR) repertoires in metastatic LNs showed significant higher consistency with TCRs in tumor than those in nonmetastatic LNs and PBMCs, suggesting the existence of common neo-antigens across metastatic LNs and primary tumor cites. In addition, the immune environment in metastatic LNs had transformed into a tumor-like status, where pro-inflammatory macrophages and exhausted T cells were upregulated, accompanied by a decrease in B cells and neutrophils. Finally, cell interactions showed that cancer-associated fibroblasts (CAFs) contributed most to shaping the immune-suppressive microenvironment, while CD8⁺ cells were the most signal-responsive cells.

CONCLUSIONS

This study revealed the cell structures of both micro- and macroenvironments, revealed how different cells diverged in related contexts as well as their prognostic capacities, and displayed a landscape of cell interactions with spatial information.

All-People-Test-Based Methods for COVID-19 Infectious Disease Dynamics Simulation Model: Towards Citywide COVID Testing

The conversion rate between asymptomatic infections and reported/unreported symptomatic infections is a very sensitive parameter for model variables that spread COVID-19. This is important information for follow-up use in screening, prediction, prognostics, contact tracing, and drug development for the COVID-19 pandemic. The model described here suggests that there may not be enough researchers to solve all of these problems thoroughly and effectively, and it requires careful selection of what we are doing and rapid sharing of results and models and optimizing modeling simulations with value to reduce the impact of COVID-19. Exploring simulation modeling will help decision makers make the most informed decisions. In order to fight against the "Delta" virus, the establishment of a line of defense through all-people testing (APT) is not only an effective method summarized from past experience but also one of the best means to effectively cut the chain of epidemic transmission. The effect of large-scale testing has been fully verified in the international community. We developed a practical dynamic infectious disease model-SETPG (A + I) RD + APT by considering the effects of the all-people test (APT). The model is useful for studying effects of screening measures and providing a more realistic modelling with all-people-test strategies, which require everybody in a population to be tested for infection. In prior work, a total of 370 epidemic cases were collected. We collected three kinds of known cases: the cumulative number of daily incidences, daily cumulative recovery, and daily cumulative deaths in Hong Kong and the United States between 22 January 2020 and 13 November 2020 were simulated. In two essential strategies of the integrated SETPG (A + I) RD + APT model, comparing the cumulative number of screenings in derivative experiments based on daily detection capability and tracking system application rate, we evaluated the performance of the timespan required for the basic regeneration number (R0) and real-time regeneration number (R0t) to reach 1; the optimal policy of each experiment is available, and the screening effect is evaluated by screening performance indicators. with the binary encoding screening method, the number of screenings for the target population is 8667 in HK and 1,803,400 in the U.S., including 6067 asymptomatic cases in HK and 1,262,380 in the U.S. as well as 2599 cases of mild symptoms in HK and 541,020 in the U.S.; there were also 8.25 days of screening timespan in HK and 9.25 days of screening timespan required in the U.S. and a daily detectability of 625,000 cases in HK and 6,050,000 cases in the U.S. Using precise tracking technology, number of screenings for the target population is 6060 cases in HK and 1,766,420 cases in the U.S., including 4242 asymptomatic cases in HK and 1,236,494 cases in the U.S. as well as 1818 cases of mild symptoms in HK and 529,926 cases in the U.S. Total screening timespan (TS) is 8.25~9.25 days. According to the proposed infectious dynamics model that adapts to the all-people test, all of the epidemic cases were reported for fitting, and the result seemed more reasonable, and epidemic prediction became more accurate. It adapted to densely populated metropolises for APT on prevention.

An ECG data sampling method for home-use IoT ECG monitor system optimization based on brick-up metaheuristic algorithm

With the rise in the popularity of Internet of Things (IoT) in-home health monitoring, the demand of data processing and analysis increases at the server. This is especially true for ECG data which has to be collected and analyzed continuously in real time. The data transmission and storage capacity of a simple home-use IoT system is often limited. In order to provide a responsive and reasonably high-resolution analysis over the data, the ECG recorder sampling rate must be tuned to an acceptable level such as 50Hz (compared to between 100Hz and 500Hz in lab), a huge amount of time series are to be gathered and dealt with. Therefore, a suitable sampling method that helps shorten the ECG data transformation time and uploading time is very important for cost saving.. In this paper, how to down sample the ECG data is investigated; instead of traditional data sampling methods, the use of a novel Brick-up Metaheuristic Optimization Algorithm (BMOA) that automatically optimizes the sampling of ECG data is proposed. By its adaptive design in choosing the most appropriate components, BMOA can build in real-time a best metaheuristic optimization algorithm for each device user assuming no two ECG data series are exactly identical. This dynamic pre-processing approach ensures each time the most optimal part of the ECG data series is harvested for health analysis from the raw data, in different scenarios from different users. In this study various application scenarios using real ECG datasets are simulated. The experimentation is tested with one of the most commonly used ECG classification methods, Long Short-Term Memory Network. The result shows the ECG data sampling by BMOA is indeed adaptive, the classification efficiency is improved, and the data storage requirement is reduced.

Convolutional neural network with group theory and random selection particle swarm optimizer for enhancing cancer image classification

As an epitome of deep learning, convolutional neural network (CNN) has shown its advantages in solving many real-world problems. Successful CNN applications on medical prognosis and diagnosis have been achieved in recent years. Their common goal is to recognize the insights from the subtle details from medical images by building a suitable CNN model with maximum accuracy and minimum error. The CNN performance is extremely sensitive to the parameter tuning for any given network structure. To approach this concern, a novel self-tuning CNN model is proposed with a significant characteristic of having a metaheuristic-based optimizer. The most optimal set of parameters is often found via our proposed method, namely group theory and random selection-based particle swarm optimization (GTRS-PSO). The insights of symmetric essentials of model structure and parameter correlation are extracted, followed by the hierarchical partitioning of parameter space, and four operators on those partitions are designed for moving neighborhoods and formulating the swarm topology accordingly. The parameters are updated by a random selection strategy at each interval of partitions during the search process. Preliminary experiments over two radiology image datasets: breast cancer and lung cancer, are conducted for a comprehensive comparison of GTRS-PSO versus other optimization algorithms. The results show that CNN with GTRS-PSO optimizer can achieve the best performance for cancer image classifications, especially when there are symmetric components inside the data properties and model structures.

Artificial intelligence in the diagnosis of COVID-19: challenges and perspectives

Artificial intelligence (AI) is being used to aid in various aspects of the COVID-19 crisis, including epidemiology, molecular research and drug development, medical diagnosis and treatment, and socioeconomics. The association of AI and COVID-19 can accelerate to rapidly diagnose positive patients. To learn the dynamics of a pandemic with relevance to AI, we search the literature using the different academic databases (PubMed, PubMed Central, Scopus, Google Scholar) and preprint servers (bioRxiv, medRxiv, arXiv). In the present review, we address the clinical applications of machine learning and deep learning, including clinical characteristics, electronic medical records, medical images (CT, X-ray, ultrasound images, etc.) in the COVID-19 diagnosis. The current challenges and future perspectives provided in this review can be used to direct an ideal deployment of AI technology in a pandemic.

Parallel ensemble learning of convolutional neural networks and local binary patterns for face recognition

BACKGROUND AND OBJECTIVE

Face recognition success rate is influenced by illumination, expression, posture change, and other factors, which is due to the low generalization ability of a single convolutional neural network. A new face recognition method based on parallel ensemble learning of convolutional neural networks (CNN) and local binary patterns (LBP) is proposed to solve this problem. It also helps to improve the low pedestrian detection rate caused by occlusion.

METHODS

First, the LBP operator is employed to extract features of the face texture. After that, 10 convolutional neural networks with 5 different network structures are adopted to further extract features for training, to improve the network parameters and get classification result by using the Softmax function after the layer is fully connected. Finally, the method of parallel ensemble learning is used to generate the final result of face recognition using majority voting.

RESULTS

By this method, the recognition rates in the ORL and Yale-B face datasets increase to 100% and 97.51%, respectively. In the experiments, the proposed approach is illustrated not only enhances its tolerance to illumination, expression, and posture but also improves the accuracy of face recognition and the poor generalization performance of the model, which is normally caused by the learning algorithm being trapped in a local minimum. Moreover, the proposed method is combined with a pedestrian detection model as a hybrid model for improving the detection rate, which shows in the result that the detection rate is improved by 11.2%.

CONCLUSION

In summary, the proposed approach greatly outperforms other competitive methods.

White learning methodology: A case study of cancer-related disease factors analysis in real-time PACS environment

BACKGROUND AND OBJECTIVE

Bayesian network is a probabilistic model of which the prediction accuracy may not be one of the highest in the machine learning family. Deep learning (DL) on the other hand possess of higher predictive power than many other models. How reliable the result is, how it is deduced, how interpretable the prediction by DL mean to users, remain obscure. DL functions like a black box. As a result, many medical practitioners are reductant to use deep learning as the only tool for critical machine learning application, such as aiding tool for cancer diagnosis.

METHODS

In this paper, a framework of white learning is being proposed which takes advantages of both black box learning and white box learning. Usually, black box learning will give a high standard of accuracy and white box learning will provide an explainable direct acyclic graph. According to our design, there are 3 stages of White Learning, loosely coupled WL, semi coupled WL and tightly coupled WL based on degree of fusion of the white box learning and black box learning. In our design, a case of loosely coupled WL is tested on breast cancer dataset. This approach uses deep learning and an incremental version of Naïve Bayes network. White learning is largely defied as a systemic fusion of machine learning models which result in an explainable Bayes network which could find out the hidden relations between features and class and deep learning which would give a higher accuracy of prediction than other algorithms. We designed a series of experiments for this loosely coupled WL model.

RESULTS

The simulation results show that using WL compared to standard black-box deep learning, the levels of accuracy and kappa statistics could be enhanced up to 50%. The performance of WL seems more stable too in extreme conditions such as noise and high dimensional data. The relations by Bayesian network of WL are more concise and stronger in affinity too.

CONCLUSION

The experiments results deliver positive signals that WL is possible to output both high classification accuracy and explainable relations graph between features and class.

CNN-based 3D object classification using Hough space of LiDAR point clouds

With the wide application of Light Detection and Ranging (LiDAR) in the collection of high-precision environmental point cloud information, three-dimensional (3D) object classification from point clouds has become an important research topic. However, the characteristics of LiDAR point clouds, such as unstructured distribution, disordered arrangement, and large amounts of data, typically result in high computational complexity and make it very difficult to classify 3D objects. Thus, this paper proposes a Convolutional Neural Network (CNN)-based 3D object classification method using the Hough space of LiDAR point clouds to overcome these problems. First, object point clouds are transformed into Hough space using a Hough transform algorithm, and then the Hough space is rasterized into a series of uniformly sized grids. The accumulator count in each grid is then computed and input to a CNN model to classify 3D objects. In addition, a semi-automatic 3D object labeling tool is developed to build a LiDAR point clouds object labeling library for four types of objects (wall, bush, pedestrian, and tree). After initializing the CNN model, we apply a dataset from the above object labeling library to train the neural network model offline through a large number of iterations. Experimental results demonstrate that the proposed method achieves object classification accuracy of up to 93.3% on average.

Mining Massive E-Health Data Streams for IoMT Enabled Healthcare Systems

With the increasing popularity of the Internet-of-Medical-Things (IoMT) and smart devices, huge volumes of data streams have been generated. This study aims to address the concept drift, which is a major challenge in the processing of voluminous data streams. Concept drift refers to overtime change in data distribution. It may occur in the medical domain, for example the medical sensors measuring for general healthcare or rehabilitation, which may switch their roles for ICU emergency operations when required. Detecting concept drifts becomes trickier when the class distributions in data are skewed, which is often true for medical sensors e-health data. Reactive Drift Detection Method (RDDM) is an efficient method for detecting long concepts. However, RDDM has a high error rate, and it does not handle class imbalance. We propose an Enhanced Reactive Drift Detection Method (ERDDM), which systematically generates strategies to handle concept drift with class imbalance in data streams. We conducted experiments to compare ERDDM with three contemporary techniques in terms of prediction error, drift detection delay, latency, and ability to handle data imbalance. The experimentation was done in Massive Online Analysis (MOA) on 48 synthetic datasets customized to possess the capabilities of data streams. ERDDM can handle abrupt and gradual drifts and performs better than all benchmarks in almost all experiments.

Quantifying breast milk intake by term and preterm infants for input into paediatric physiologically based pharmacokinetic models

Despite the many benefits of breast milk, mothers taking medication are often uncertain about the risks of drug exposure to their infants and decide not to breastfeed. Physiologically based pharmacokinetic models can contribute to drug‐in‐milk safety assessments by predicting the infant exposure and subsequently, risk for toxic effects that would result from continuous breastfeeding. This review aimed to quantify breast milk intake feeding parameters in term and preterm infants using literature data for input into paediatric physiologically based pharmacokinetic models designed for drug‐in‐milk risk assessment. Ovid MEDLINE and Embase were searched up to July 2, 2019. Key study reference lists and grey literature were reviewed. Title, abstract and full text were screened in nonduplicate. Daily weight‐normalized human milk intake (WHMI) and feeding frequency by age were extracted. The review process retrieved 52 studies. A nonlinear regression equation was constructed to describe the WHMI of exclusively breastfed term infants from birth to 1 year of age. In all cases, preterm infants fed with similar feeding parameters to term infants on a weight‐normalized basis. Maximum WHMI was 152.6 ml/kg/day at 19.7 days, and weighted mean feeding frequency was 7.7 feeds/day. Existing methods for approximating breast milk intake were refined by using a comprehensive set of literature data to describe WHMI and feeding frequency. Milk feeding parameters were quantified for preterm infants, a vulnerable population at risk for high drug exposure and toxic effects. A high‐risk period of exposure at 2–4 weeks of age was identified and can inform future drug‐in‐milk risk assessments.

Artificial intelligence in cancer diagnosis and prognosis: Opportunities and challenges

Cancer is an aggressive disease with a low median survival rate. Ironically, the treatment process is long and very costly due to its high recurrence and mortality rates. Accurate early diagnosis and prognosis prediction of cancer are essential to enhance the patient's survival rate. Developments in statistics and computer engineering over the years have encouraged many scientists to apply computational methods such as multivariate statistical analysis to analyze the prognosis of the disease, and the accuracy of such analyses is significantly higher than that of empirical predictions. Furthermore, as artificial intelligence (AI), especially machine learning and deep learning, has found popular applications in clinical cancer research in recent years, cancer prediction performance has reached new heights. This article reviews the literature on the application of AI to cancer diagnosis and prognosis, and summarizes its advantages. We explore how AI assists cancer diagnosis and prognosis, specifically with regard to its unprecedented accuracy, which is even higher than that of general statistical applications in oncology. We also demonstrate ways in which these methods are advancing the field. Finally, opportunities and challenges in the clinical implementation of AI are discussed. Hence, this article provides a new perspective on how AI technology can help improve cancer diagnosis and prognosis, and continue improving human health in the future.

A Novel Sensor Data Pre-Processing Methodology for the Internet of Things Using Anomaly Detection and Transfer-By-Subspace-Similarity Transformation

The Internet of Things (IoT) and sensors are becoming increasingly popular, especially in monitoring large and ambient environments. Applications that embrace IoT and sensors often require mining the data feeds that are collected at frequent intervals for intelligence. Despite the fact that such sensor data are massive, most of the data contents are identical and repetitive; for example, human traffic in a park at night. Most of the traditional classification algorithms were originally formulated decades ago, and they were not designed to handle such sensor data effectively. Hence, the performance of the learned model is often poor because of the small granularity in classification and the sporadic patterns in the data. To improve the quality of data mining from the IoT data, a new pre-processing methodology based on subspace similarity detection is proposed. Our method can be well integrated with traditional data mining algorithms and anomaly detection methods. The pre-processing method is flexible for handling similar kinds of sensor data that are sporadic in nature that exist in many ambient sensing applications. The proposed methodology is evaluated by extensive experiment with a collection of classical data mining models. An improvement over the precision rate is shown by using the proposed method.

Development of interventions for an intelligent and individualized mobile health care system to promote healthy diet and physical activity: using an intervention mapping framework

Background

The mortality of coronary heart disease can be largely reduced by modifying unhealthy lifestyles. However, the long-term effectiveness of interventions for modifying unhealthy diet and physical inactivity of patients with coronary heart disease remain unsatisfactory worldwide. This study aims to systematically design a set of theory-based and evidence-based, individualized, and intelligent interventions for promoting the adoption and maintenance of a healthy diet and physical activity level in patients with coronary heart disease.

Methods

The interventions will be delivered by a mobile health care system called Individualized, Intelligent and Integrated Cardiovascular Application for Risk Elimination. Three steps of the intervention mapping framework were used to systematically develop the interventions. Step 1: needs assessment, which was carried out by a literature review, in-depth interviews and focus group discussions. Step 2: development of objective matrix for diet and physical activity changes, based on the intersection of objectives and determinants from the Contemplation-Action-Maintenance behavior change model. Step 3: formulation of evidence-based methods and strategies, and practical applications, through a systematic review of existing literature, research team discussions, and consultation with multidisciplinary expert panels.

Results

Three needs relevant to content of the intervention, one need relevant to presentation modes of the intervention, and four needs relevant to functional features of the application were identified. The objective matrix includes three performance objectives, and 24 proximal performance objectives. The evidence-based and theory-based interventions include 31 strategies, 61 evidence-based methods, and 393 practical applications.

Conclusions

This article describes the development of theory-based and evidence-based interventions of the mobile health care system for promoting the adoption and maintenance of a healthy diet and physical activity level in a structured format. The results will provide a theoretical and methodological basis to explore the application of intervention mapping in developing effective behavioral mobile health interventions for patients with coronary heart disease.

Trial registration

Chinese Clinical Trial Registry: ChiCTR-INR-16010242. Registered 24 December 2016. http://www.chictr.org.cn/index.aspx

Enhanced ground segmentation method for Lidar point clouds in human-centric autonomous robot systems

Ground segmentation is an important step for any autonomous and remote-controlled systems. After separating ground and nonground parts, many works such as object tracking and 3D reconstruction can be performed. In this paper, we propose an efficient method for segmenting the ground data of point clouds acquired from multi-channel Lidar sensors. The goal of this study is to completely separate ground points and nonground points in real time. The proposed method segments ground data efficiently and accurately in various environments such as flat terrain, undulating/rugged terrain, and mountainous terrain. First, the point cloud in each obtained frame is divided into small groups. We then focus on the vertical and horizontal directions separately, before processing both directions concurrently. Experiments were conducted, and the results showed the effectiveness of the proposed ground segment method. For flat and sloping terrains, the accuracy is over than 90%. Besides, the quality of the proposed method is also over than 80% for bumpy terrains. On the other hand, the speed is 145 frames per second. Therefore, in both simple and complex terrains, we gained good results and real-time performance.

Classifying 3D objects in LiDAR point clouds with a back-propagation neural network

Due to object recognition accuracy limitations, unmanned ground vehicles (UGVs) must perceive their environments for local path planning and object avoidance. To gather high-precision information about the UGV’s surroundings, Light Detection and Ranging (LiDAR) is frequently used to collect large-scale point clouds. However, the complex spatial features of these clouds, such as being unstructured, diffuse, and disordered, make it difficult to segment and recognize individual objects. This paper therefore develops an object feature extraction and classification system that uses LiDAR point clouds to classify 3D objects in urban environments. After eliminating the ground points via a height threshold method, this describes the 3D objects in terms of their geometrical features, namely their volume, density, and eigenvalues. A back-propagation neural network (BPNN) model is trained (over the course of many iterations) to use these extracted features to classify objects into five types. During the training period, the parameters in each layer of the BPNN model are continually changed and modified via back-propagation using a non-linear sigmoid function. In the system, the object segmentation process supports obstacle detection for autonomous driving, and the object recognition method provides an environment perception function for terrain modeling. Our experimental results indicate that the object recognition accuracy achieve 91.5% in outdoor environment.

Multi-stage optimization of a deep model: A case study on ground motion modeling

In this study, a multi-stage optimization procedure is proposed to develop deep neural network models which results in a powerful deep learning pipeline called intelligent deep learning (iDeepLe). The proposed pipeline is then evaluated by a challenging real-world problem, the modeling of the spectral acceleration experienced by a particle during earthquakes. This approach has three main stages to optimize the deep model topology, the hyper-parameters, and its performance, respectively. This pipeline optimizes the deep model via adaptive learning rate optimization algorithms for both accuracy and complexity in multiple stages, while simultaneously solving the unknown parameters of the regression model. Among the seven adaptive learning rate optimization algorithms, Nadam optimization algorithm has shown the best performance results in the current study. The proposed approach is shown to be a suitable tool to generate solid models for this complex real-world system. The results also show that the parallel pipeline of iDeepLe has the capacity to handle big data problems as well.

AmPEP: Sequence-based prediction of antimicrobial peptides using distribution patterns of amino acid properties and random forest

Antimicrobial peptides (AMPs) are promising candidates in the fight against multidrug-resistant pathogens owing to AMPs’ broad range of activities and low toxicity. Nonetheless, identification of AMPs through wet-lab experiments is still expensive and time consuming. Here, we propose an accurate computational method for AMP prediction by the random forest algorithm. The prediction model is based on the distribution patterns of amino acid properties along the sequence. Using our collection of large and diverse sets of AMP and non-AMP data (3268 and 166791 sequences, respectively), we evaluated 19 random forest classifiers with different positive:negative data ratios by 10-fold cross-validation. Our optimal model, AmPEP with the 1:3 data ratio, showed high accuracy (96%), Matthew’s correlation coefficient (MCC) of 0.9, area under the receiver operating characteristic curve (AUC-ROC) of 0.99, and the Kappa statistic of 0.9. Descriptor analysis of AMP/non-AMP distributions by means of Pearson correlation coefficients revealed that reduced feature sets (from a full-featured set of 105 to a minimal-feature set of 23) can result in comparable performance in all respects except for some reductions in precision. Furthermore, AmPEP outperformed existing methods in terms of accuracy, MCC, and AUC-ROC when tested on benchmark datasets.

Gaussian Guided Self-Adaptive Wolf Search Algorithm Based on Information Entropy Theory

Nowadays, swarm intelligence algorithms are becoming increasingly popular for solving many optimization problems. The Wolf Search Algorithm (WSA) is a contemporary semi-swarm intelligence algorithm designed to solve complex optimization problems and demonstrated its capability especially for large-scale problems. However, it still inherits a common weakness for other swarm intelligence algorithms: that its performance is heavily dependent on the chosen values of the control parameters. In 2016, we published the Self-Adaptive Wolf Search Algorithm (SAWSA), which offers a simple solution to the adaption problem. As a very simple schema, the original SAWSA adaption is based on random guesses, which is unstable and naive. In this paper, based on the SAWSA, we investigate the WSA search behaviour more deeply. A new parameter-guided updater, the Gaussian-guided parameter control mechanism based on information entropy theory, is proposed as an enhancement of the SAWSA. The heuristic updating function is improved. Simulation experiments for the new method denoted as the Gaussian-Guided Self-Adaptive Wolf Search Algorithm (GSAWSA) validate the increased performance of the improved version of WSA in comparison to its standard version and other prevalent swarm algorithms.

Epileptic Seizures Prediction Using Machine Learning Methods

Epileptic seizures occur due to disorder in brain functionality which can affect patient's health. Prediction of epileptic seizures before the beginning of the onset is quite useful for preventing the seizure by medication. Machine learning techniques and computational methods are used for predicting epileptic seizures from Electroencephalograms (EEG) signals. However, preprocessing of EEG signals for noise removal and features extraction are two major issues that have an adverse effect on both anticipation time and true positive prediction rate. Therefore, we propose a model that provides reliable methods of both preprocessing and feature extraction. Our model predicts epileptic seizures' sufficient time before the onset of seizure starts and provides a better true positive rate. We have applied empirical mode decomposition (EMD) for preprocessing and have extracted time and frequency domain features for training a prediction model. The proposed model detects the start of the preictal state, which is the state that starts few minutes before the onset of the seizure, with a higher true positive rate compared to traditional methods, 92.23%, and maximum anticipation time of 33 minutes and average prediction time of 23.6 minutes on scalp EEG CHB-MIT dataset of 22 subjects.

Training Classifiers with Shadow Features for Sensor-Based Human Activity Recognition

In this paper, a novel training/testing process for building/using a classification model based on human activity recognition (HAR) is proposed. Traditionally, HAR has been accomplished by a classifier that learns the activities of a person by training with skeletal data obtained from a motion sensor, such as Microsoft Kinect. These skeletal data are the spatial coordinates (x, y, z) of different parts of the human body. The numeric information forms time series, temporal records of movement sequences that can be used for training a classifier. In addition to the spatial features that describe current positions in the skeletal data, new features called ‘shadow features’ are used to improve the supervised learning efficacy of the classifier. Shadow features are inferred from the dynamics of body movements, and thereby modelling the underlying momentum of the performed activities. They provide extra dimensions of information for characterising activities in the classification process, and thereby significantly improve the classification accuracy. Two cases of HAR are tested using a classification model trained with shadow features: one is by using wearable sensor and the other is by a Kinect-based remote sensor. Our experiments can demonstrate the advantages of the new method, which will have an impact on human activity detection research.

Robust High-dimensional Bioinformatics Data Streams Mining by ODR-ioVFDT

Outlier detection in bioinformatics data streaming mining has received significant attention by research communities in recent years. The problems of how to distinguish noise from an exception and deciding whether to discard it or to devise an extra decision path for accommodating it are causing dilemma. In this paper, we propose a novel algorithm called ODR with incrementally Optimized Very Fast Decision Tree (ODR-ioVFDT) for taking care of outliers in the progress of continuous data learning. By using an adaptive interquartile-range based identification method, a tolerance threshold is set. It is then used to judge if a data of exceptional value should be included for training or otherwise. This is different from the traditional outlier detection/removal approaches which are two separate steps in processing through the data. The proposed algorithm is tested using datasets of five bioinformatics scenarios and comparing the performance of our model and other ones without ODR. The results show that ODR-ioVFDT has better performance in classification accuracy, kappa statistics, and time consumption. The ODR-ioVFDT applied onto bioinformatics streaming data processing for detecting and quantifying the information of life phenomena, states, characters, variables and components of the organism can help to diagnose and treat disease more effectively.

Adaptive swarm cluster-based dynamic multi-objective synthetic minority oversampling technique algorithm for tackling binary imbalanced datasets in biomedical data classification

Background

An imbalanced dataset is defined as a training dataset that has imbalanced proportions of data in both interesting and uninteresting classes. Often in biomedical applications, samples from the stimulating class are rare in a population, such as medical anomalies, positive clinical tests, and particular diseases. Although the target samples in the primitive dataset are small in number, the induction of a classification model over such training data leads to poor prediction performance due to insufficient training from the minority class.

Results

In this paper, we use a novel class-balancing method named adaptive swarm cluster-based dynamic multi-objective synthetic minority oversampling technique (ASCB_DmSMOTE) to solve this imbalanced dataset problem, which is common in biomedical applications. The proposed method combines under-sampling and over-sampling into a swarm optimisation algorithm. It adaptively selects suitable parameters for the rebalancing algorithm to find the best solution. Compared with the other versions of the SMOTE algorithm, significant improvements, which include higher accuracy and credibility, are observed with ASCB_DmSMOTE.

Conclusions

Our proposed method tactfully combines two rebalancing techniques together. It reasonably re-allocates the majority class in the details and dynamically optimises the two parameters of SMOTE to synthesise a reasonable scale of minority class for each clustered sub-imbalanced dataset. The proposed methods ultimately overcome other conventional methods and attains higher credibility with even greater accuracy of the classification model.

WITHDRAWN: Improving classification of protein binders for virtual drug screening by novel swarm-based feature selection techniques

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WITHDRAWN: Sentiment prediction by text mining medical documents using optimized swarm search-based feature selection

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WITHDRAWN: Clinical pathways inference from decision rules by hybrid stream mining and fuzzy unordered rule induction strategy

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WITHDRAWN: Benchmarking swarm intelligence clustering algorithms with case study of medical data

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WITHDRAWN: Adaptive Swarm Balancing Algorithms for rare-event prediction in imbalanced healthcare data

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