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Pankratov D, Hidalgo Martinez S, Karman C, Gerzhik A, Gomila G, Trashin S, Boschker HTS, Geelhoed JS, Mayer D, De Wael K, J R Meysman F. The organo-metal-like nature of long-range conduction in cable bacteria. Bioelectrochemistry 2024; 157:108675. [PMID: 38422765 DOI: 10.1016/j.bioelechem.2024.108675] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Revised: 02/22/2024] [Accepted: 02/24/2024] [Indexed: 03/02/2024]
Abstract
Cable bacteria are filamentous, multicellular microorganisms that display an exceptional form of biological electron transport across centimeter-scale distances. Currents are guided through a network of nickel-containing protein fibers within the cell envelope. Still, the mechanism of long-range conduction remains unresolved. Here, we characterize the conductance of the fiber network under dry and wet, physiologically relevant, conditions. Our data reveal that the fiber conductivity is high (median value: 27 S cm-1; range: 2 to 564 S cm-1), does not show any redox signature, has a low thermal activation energy (Ea = 69 ± 23 meV), and is not affected by humidity or the presence of ions. These features set the nickel-based conduction mechanism in cable bacteria apart from other known forms of biological electron transport. As such, conduction resembles that of an organic semi-metal with a high charge carrier density. Our observation that biochemistry can synthesize an organo-metal-like structure opens the way for novel bio-based electronic technologies.
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Affiliation(s)
- Dmitrii Pankratov
- Geobiology Group, Microbial Systems Technology Excellence Centre, Department of Biology, University of Antwerp, Universiteitsplein 1, B-2610 Wilrijk, Belgium; A-Sense Lab, Department of Bioscience Engineering, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerpen, Belgium
| | - Silvia Hidalgo Martinez
- Geobiology Group, Microbial Systems Technology Excellence Centre, Department of Biology, University of Antwerp, Universiteitsplein 1, B-2610 Wilrijk, Belgium
| | - Cheryl Karman
- Geobiology Group, Microbial Systems Technology Excellence Centre, Department of Biology, University of Antwerp, Universiteitsplein 1, B-2610 Wilrijk, Belgium; A-Sense Lab, Department of Bioscience Engineering, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerpen, Belgium
| | - Anastasia Gerzhik
- Institute of Biological Information Processing, Bioelectronics (IBI-3), Forschungszentrum Jülich, 52428 Jülich, Germany
| | - Gabriel Gomila
- Nanoscale Bioelectric Characterization Group, Institute for Bioengineering of Catalunya (IBEC), The Barcelona Institute of Science and Technology, Baldiri i Reixac 15-21, 08028 Barcelona, Spain; Department of Electronics and Biomedical Engineering, Universitat de Barcelona, Martí i Franqués 1, 08028 Barcelona, Spain
| | - Stanislav Trashin
- A-Sense Lab, Department of Bioscience Engineering, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerpen, Belgium
| | - Henricus T S Boschker
- Geobiology Group, Microbial Systems Technology Excellence Centre, Department of Biology, University of Antwerp, Universiteitsplein 1, B-2610 Wilrijk, Belgium; Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629HZ Delft, the Netherlands
| | - Jeanine S Geelhoed
- Geobiology Group, Microbial Systems Technology Excellence Centre, Department of Biology, University of Antwerp, Universiteitsplein 1, B-2610 Wilrijk, Belgium
| | - Dirk Mayer
- Institute of Biological Information Processing, Bioelectronics (IBI-3), Forschungszentrum Jülich, 52428 Jülich, Germany
| | - Karolien De Wael
- A-Sense Lab, Department of Bioscience Engineering, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerpen, Belgium
| | - Filip J R Meysman
- Geobiology Group, Microbial Systems Technology Excellence Centre, Department of Biology, University of Antwerp, Universiteitsplein 1, B-2610 Wilrijk, Belgium; Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629HZ Delft, the Netherlands.
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Shanmugam ST, Campos R, Trashin S, Daems E, Carneiro D, Fraga A, Ribeiro R, De Wael K. Singlet oxygen-based photoelectrochemical detection of miRNAs in prostate cancer patients' plasma: A novel diagnostic tool for liquid biopsy. Bioelectrochemistry 2024; 158:108698. [PMID: 38640856 DOI: 10.1016/j.bioelechem.2024.108698] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Revised: 03/08/2024] [Accepted: 03/27/2024] [Indexed: 04/21/2024]
Abstract
Dysregulation of miRNA expression occurs in many cancers, making miRNAs useful in cancer diagnosis and therapeutic guidance. In a clinical context using methods such as polymerase chain reaction (PCR), the limited amount of miRNAs in circulation often limits their quantification. Here, we present a PCR-free and sensitive singlet oxygen (1O2)-based strategy for the detection and quantification of miRNAs in untreated human plasma from patients diagnosed with prostate cancer. A target miRNA is specifically captured by functionalised magnetic beads and a detection oligonucleotide probe in a sandwich-like format. The formed complex is concentrated at the sensor surface via magnetic beads, providing an interface for the photoinduced redox signal amplification. The detection oligonucleotide probe bears a molecular photosensitiser, which produces 1O2 upon illumination, oxidising a redox reporter and creating a redox cycling loop, allowing quantification of pM level miRNA in diluted human plasma within minutes after hybridisation and without target amplification.
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Affiliation(s)
- Saranya Thiruvottriyur Shanmugam
- A-Sense Lab, Department of Bioscience Engineering, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp, Belgium; NANOlab Center of Excellence, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp, Belgium
| | - Rui Campos
- A-Sense Lab, Department of Bioscience Engineering, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp, Belgium; NANOlab Center of Excellence, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp, Belgium
| | - Stanislav Trashin
- A-Sense Lab, Department of Bioscience Engineering, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp, Belgium; NANOlab Center of Excellence, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp, Belgium
| | - Elise Daems
- A-Sense Lab, Department of Bioscience Engineering, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp, Belgium; NANOlab Center of Excellence, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp, Belgium
| | - Diogo Carneiro
- i3S, Tumour & Microenvironment Interactions Group, Instituto de Investigação e Inovação em Saúde, University of Porto, Rua Alfredo Allen 208, 4200-135 Porto, Portugal; Department of Urology, Centro Hospitalar Universitário do Porto, Largo Prof. Abel Salazar, 4099-001 Porto, Portugal
| | - Avelino Fraga
- i3S, Tumour & Microenvironment Interactions Group, Instituto de Investigação e Inovação em Saúde, University of Porto, Rua Alfredo Allen 208, 4200-135 Porto, Portugal; Department of Urology, Centro Hospitalar Universitário do Porto, Largo Prof. Abel Salazar, 4099-001 Porto, Portugal
| | - Ricardo Ribeiro
- i3S, Tumour & Microenvironment Interactions Group, Instituto de Investigação e Inovação em Saúde, University of Porto, Rua Alfredo Allen 208, 4200-135 Porto, Portugal; Department of Pathology, Centro Hospitalar Universitário do Porto, Largo Prof. Abel Salazar, 4099-001 Porto, Portugal
| | - Karolien De Wael
- A-Sense Lab, Department of Bioscience Engineering, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp, Belgium; NANOlab Center of Excellence, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp, Belgium.
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Khan SU, Trashin S, Beltran V, Korostei YS, Pelmus M, Gorun SM, Dubinina TV, Verbruggen SW, De Wael K. Photoelectrochemical Behavior of Phthalocyanine-Sensitized TiO 2 in the Presence of Electron-Shuttling Mediators. Anal Chem 2022; 94:12723-12731. [PMID: 36094164 DOI: 10.1021/acs.analchem.2c02210] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Dye-sensitized TiO2 has found many applications for dye-sensitized solar cells (DSSC), solar-to-chemical energy conversion, water/air purification systems, and (electro)chemical sensors. We report an electrochemical system for testing dye-sensitized materials that can be utilized in photoelectrochemical (PEC) sensors and energy conversion. Unlike related systems, the reported system does not require a direct electron transfer from semiconductors to electrodes. Rather, it relies on electron shuttling by redox mediators. A range of model photocatalytic materials were prepared using three different TiO2 materials (P25, P90, and PC500) and three sterically hindered phthalocyanines (Pcs) with electron-rich tert-butyl substituents (t-Bu4PcZn, t-Bu4PcAlCl, and t-Bu4PcH2). The materials were compared with previously developed TiO2 modified by electron-deficient, also sterically hindered fluorinated phthalocyanine F64PcZn, a singlet oxygen (1O2) producer, as well as its metal-free derivative, F64PcH2. The PEC activity depended on the redox mediator, as well as the type of TiO2 and Pc. By comparing the responses of one-electron shuttles, such as K4Fe(CN)4, and 1O2-reactive electron shuttles, such as phenol, it is possible to reveal the action mechanism of the supported photosensitizers, while the overall activity can be assessed using hydroquinone. t-Bu4PcAlCl showed significantly lower blank responses and higher specific responses toward chlorophenols compared to t-Bu4PcZn due to the electron-withdrawing effect of the Al3+ metal center. The combination of reactivity insights and the need for only microgram amounts of sensing materials renders the reported system advantageous for practical applications.
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Affiliation(s)
- Shahid Ullah Khan
- A-Sense Lab, Department of Bioscience Engineering, University of Antwerp, Antwerp 2020, Belgium.,NANOlab Center of Excellence, University of Antwerp, Antwerp 2020, Belgium.,DuEL Research Group, Department of Bioscience Engineering, University of Antwerp, Antwerp 2020, Belgium
| | - Stanislav Trashin
- A-Sense Lab, Department of Bioscience Engineering, University of Antwerp, Antwerp 2020, Belgium.,NANOlab Center of Excellence, University of Antwerp, Antwerp 2020, Belgium
| | - Victoria Beltran
- A-Sense Lab, Department of Bioscience Engineering, University of Antwerp, Antwerp 2020, Belgium.,NANOlab Center of Excellence, University of Antwerp, Antwerp 2020, Belgium
| | - Yuliya S Korostei
- Institiute of Physiologically Active Compounds, Russian Academy of Science, Chernogolovka, Moscow Region 14243, Russian Federation
| | - Marius Pelmus
- Department of Chemistry and Biochemistry and the Center for Functional Materials, Seton Hall University, South Orange, New Jersey 07079, United States
| | - Sergiu M Gorun
- Department of Chemistry and Biochemistry and the Center for Functional Materials, Seton Hall University, South Orange, New Jersey 07079, United States
| | - Tatiana V Dubinina
- Institiute of Physiologically Active Compounds, Russian Academy of Science, Chernogolovka, Moscow Region 14243, Russian Federation.,Department of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russian Federation
| | - Sammy W Verbruggen
- NANOlab Center of Excellence, University of Antwerp, Antwerp 2020, Belgium.,DuEL Research Group, Department of Bioscience Engineering, University of Antwerp, Antwerp 2020, Belgium
| | - Karolien De Wael
- A-Sense Lab, Department of Bioscience Engineering, University of Antwerp, Antwerp 2020, Belgium.,NANOlab Center of Excellence, University of Antwerp, Antwerp 2020, Belgium
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Shanmugam ST, Trashin S, De Wael K. Singlet oxygen-based photoelectrochemical detection of DNA. Biosens Bioelectron 2022; 195:113652. [PMID: 34583105 DOI: 10.1016/j.bios.2021.113652] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Revised: 09/02/2021] [Accepted: 09/16/2021] [Indexed: 01/02/2023]
Abstract
The current work, designed for the photoelectrochemical detection of DNA, evaluates light-responsive DNA probes carrying molecular photosensitizers generating singlet oxygen (1O2). We take advantage of their chromophore's ability to produce 1O2 upon photoexcitation and subsequent photocurrent response. Type I, fluorescent and type II photosensitizers were studied using diode lasers at 406 nm blue, 532 nm green and 659 nm red lasers in the presensce and absence of a redox reporter, hydroquinone (HQ). Only type II photosensitizers (producing 1O2) resulted in a noticeable photocurrent in 1-4 nA range upon illumination, in particular, dissolved DNA probes labeled with chlorin e6 and erythrosine were found to give a well-detectable photocurrent response in the presence of HQ. Whereas, Type I photosensitizers and fluorescent chromophores generate negligible photocurrents (<0.15 nA). The analytical performance of the sensing system was evaluated using a magnetic beads-based DNA assay on disposable electrode platforms, with a focus to enhance the sensitivity and robustness of the technique in detecting complementary DNA targets. Amplified photocurrent responses in the range of 70-100 nA were obtained and detection limits of 17 pM and 10 pM were achieved using magnetic beads-captured chlorin e6 and erythrosine labeled DNA probes respectively. The presented novel photoelectrochemical detection can further be optimized and employed in applications for which enzymatic amplification such as polymerase chain reaction (PCR) is not applicable owing to their limitations and as an effective alternative to colorimetric detection when rapid detection of specific nucleic acid targets is required.
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Affiliation(s)
- Saranya Thiruvottriyur Shanmugam
- A-Sense Lab, Department of Bioengineering, University of Antwerp, Groenenborgerlaan 171, 2020, Antwerp, Belgium; NANOlab Center of Excellence, University of Antwerp, Groenenborgerlaan 171, 2020, Antwerp, Belgium
| | - Stanislav Trashin
- A-Sense Lab, Department of Bioengineering, University of Antwerp, Groenenborgerlaan 171, 2020, Antwerp, Belgium; NANOlab Center of Excellence, University of Antwerp, Groenenborgerlaan 171, 2020, Antwerp, Belgium
| | - Karolien De Wael
- A-Sense Lab, Department of Bioengineering, University of Antwerp, Groenenborgerlaan 171, 2020, Antwerp, Belgium; NANOlab Center of Excellence, University of Antwerp, Groenenborgerlaan 171, 2020, Antwerp, Belgium.
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Trashin S, Morales-Yánez F, Thiruvottriyur Shanmugam S, Paredis L, Carrión EN, Sariego I, Muyldermans S, Polman K, Gorun SM, De Wael K. Nanobody-Based Immunosensor Detection Enhanced by Photocatalytic-Electrochemical Redox Cycling. Anal Chem 2021; 93:13606-13614. [PMID: 34585567 DOI: 10.1021/acs.analchem.1c02876] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Detection of antigenic biomarkers present in trace amounts is of crucial importance for medical diagnosis. A parasitic disease, human toxocariasis, lacks an adequate diagnostic method despite its worldwide occurrence. The currently used serology tests may stay positive even years after a possibly unnoticed infection, whereas the direct detection of a re-infection or a still active infection remains a diagnostic challenge due to the low concentration of circulating parasitic antigens. We report a time-efficient sandwich immunosensor using small recombinant single-domain antibodies (nanobodies) derived from camelid heavy-chain antibodies specific to Toxocara canis antigens. An enhanced sensitivity to pg/mL levels is achieved by using a redox cycle consisting of a photocatalytic oxidation and electrochemical reduction steps. The photocatalytic oxidation is achieved by a photosensitizer generating singlet oxygen (1O2) that, in turn, readily reacts with p-nitrophenol enzymatically produced under alkaline conditions. The photooxidation produces benzoquinone that is electrochemically reduced to hydroquinone, generating an amperometric response. The light-driven process could be easily separated from the background, thus making amperometric detection more reliable. The proposed method for detection of the toxocariasis antigen marker shows superior performances compared to other detection schemes with the same nanobodies and outperforms by at least two orders of magnitude the assays based on regular antibodies, thus suggesting new opportunities for electrochemical immunoassays of challenging low levels of antigens.
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Affiliation(s)
| | - Francisco Morales-Yánez
- Department of Biomedical Sciences, Institute of Tropical Medicine, 2000 Antwerp, Belgium.,Laboratory of Cellular and Molecular Immunology, Vrije Universiteit Brussel, 1050 Brussels, Belgium
| | | | - Linda Paredis
- Department of Biomedical Sciences, Institute of Tropical Medicine, 2000 Antwerp, Belgium
| | - Erik N Carrión
- Department of Chemistry and Biochemistry and the Center for Functional Materials, Seton Hall University, South Orange, New Jersey 07079, United States
| | - Idalia Sariego
- Department of Parasitology, Institute of Tropical Medicine Pedro Kouri, 17100 Havana, Cuba
| | - Serge Muyldermans
- Laboratory of Cellular and Molecular Immunology, Vrije Universiteit Brussel, 1050 Brussels, Belgium
| | - Katja Polman
- Department of Biomedical Sciences, Institute of Tropical Medicine, 2000 Antwerp, Belgium
| | - Sergiu M Gorun
- Department of Chemistry and Biochemistry and the Center for Functional Materials, Seton Hall University, South Orange, New Jersey 07079, United States
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Thiruvottriyur Shanmugam S, Trashin S, De Wael K. Gold-sputtered microelectrodes with built-in gold reference and counter electrodes for electrochemical DNA detection. Analyst 2021; 145:7646-7653. [PMID: 32966365 DOI: 10.1039/d0an01387k] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Gold-sputtered microelectrodes with built-in gold reference and counter electrodes represent a promising platform for the development of disposable DNA sensors. Pretreating gold electrode surfaces and immobilization of DNA thereon is commonly employed in biosensing applications. However, with no scientific or practical guidelines to prepare a DNA sensor using these miniature gold-sputtered microelectrodes, cleaning and immobilization steps need to be systematically optimized and updated. In this work, we present efficient cleaning and modification of miniaturized gold-sputtered microelectrodes with thiolated DNA probes for DNA detection. Additional discussions on subtleties and nuances involved at each stage of pretreating and modifying gold-sputtered microelectrodes are included to present a robust, well-founded protocol. It was evident that the insights on cleaning polycrystalline gold disk electrodes with a benchmark electrode surface for DNA sensors, cannot be transferred to clean these miniature gold-sputtered microelectrodes. Therefore, a comparison between five different cleaning protocols was made to find the optimal one for gold-sputtered microelectrodes. Additionally, two principally different immobilization techniques for gold-sputtered microelectrode modification with thiolated ssDNA were compared i.e., immobilization through passive chemisorption and potential perturbation were compared in terms of thiol-specific attachment and thiol-unspecific adsorption through nitrogenous bases. The hybridization performance of these prepared electrodes was characterized by their sensitive complementary DNA capturing ability, detected by a standard alkaline phosphatase assay. Immobilization through passive chemisorption proved to be efficient in capturing the complementary target DNA with a detection limit of 0.14 nM and sensitivity of 9.38 A M-1 cm2. In general, this work presents a comprehensive understanding of cleaning, modification and performance of gold-sputtered microelectrodes with built-in gold reference and counter electrodes for both fundamental investigations and practical DNA sensing applications.
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Moiseeva EO, Trashin S, Korostei YS, Ullah Khan S, Kosov AD, De Wael K, Dubinina TV, Tomilova LG. Electrochemical and spectroelectrochemical studies of tert-butyl-substituted aluminum phthalocyanine. Polyhedron 2021. [DOI: 10.1016/j.poly.2021.115136] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Blidar A, Trashin S, Carrión EN, Gorun SM, Cristea C, De Wael K. Enhanced Photoelectrochemical Detection of an Analyte Triggered by Its Concentration by a Singlet Oxygen-Generating Fluoro Photosensitizer. ACS Sens 2020; 5:3501-3509. [PMID: 33118815 DOI: 10.1021/acssensors.0c01609] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
The use of a photocatalyst (photosensitizer) which produces singlet oxygen instead of enzymes for oxidizing analytes creates opportunities for designing cost-efficient and sensitive photoelectrochemical sensors. We report that perfluoroisopropyl-substituted zinc phthalocyanine (F64PcZn) interacts specifically with a complex phenolic compound, the antibiotic rifampicin (RIF), but not with hydroquinone or another complex phenolic compound, the antibiotic doxycycline. The specificity is imparted by the selective preconcentration of RIF in the photocatalytic layer, as revealed by electrochemical and optical measurements, complemented by molecular modeling that confirms the important role of a hydrophobic cavity formed by the iso-perfluoropropyl groups of the photocatalyst. The preconcentration effect favorably enhances the RIF photoelectrochemical detection limit as well as sensitivity to nanomolar (ppb) concentrations, LOD = 7 nM (6 ppb) and 2.8 A·M-1·cm-2, respectively. The selectivity to RIF, retained in the photosensitizer layer, is further enhanced by the selective removal of all unretained phenols via simple washing of the electrodes with pure buffer. The utility of the sensor for analyzing municipal wastewater was demonstrated. This first demonstration of enhanced selectivity and sensitivity due to intrinsic interactions of a molecular photocatalyst (photosensitizer) with an analyte, without use of a biorecognition element, may allow the design of related, robust, simple, and viable sensors.
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Affiliation(s)
- Adrian Blidar
- Department of Analytical Chemistry, “Iuliu Hatieganu” University of Medicine and Pharmacy, 4 Pasteur Street, 400349 Cluj-Napoca, Romania
| | | | - Erik N. Carrión
- Department of Chemistry and Biochemistry and the Center for Functional Materials, Seton Hall University, South Orange, New Jersey 07079, United States
| | - Sergiu M. Gorun
- Department of Chemistry and Biochemistry and the Center for Functional Materials, Seton Hall University, South Orange, New Jersey 07079, United States
| | - Cecilia Cristea
- Department of Analytical Chemistry, “Iuliu Hatieganu” University of Medicine and Pharmacy, 4 Pasteur Street, 400349 Cluj-Napoca, Romania
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Bottari F, Daems E, de Vries AM, Van Wielendaele P, Trashin S, Blust R, Sobott F, Madder A, Martins JC, De Wael K. Do Aptamers Always Bind? The Need for a Multifaceted Analytical Approach When Demonstrating Binding Affinity between Aptamer and Low Molecular Weight Compounds. J Am Chem Soc 2020; 142:19622-19630. [DOI: 10.1021/jacs.0c08691] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Fabio Bottari
- AXES Research Group, Department of Bioscience Engineering, University of Antwerp, Antwerp, 2020, Belgium
| | - Elise Daems
- AXES Research Group, Department of Bioscience Engineering, University of Antwerp, Antwerp, 2020, Belgium
- BAMS Research Group, Department of Chemistry, University of Antwerp, Antwerp, 2020, Belgium
| | - Anne-Mare de Vries
- NMR and Structure Analysis Research Group, Department of Organic and Macromolecular Chemistry, Ghent University, Ghent, 9000, Belgium
- Organic and Biomimetic Chemistry Research Group, Department of Organic and Macromolecular Chemistry, Ghent University, Ghent, 9000, Belgium
| | - Pieter Van Wielendaele
- Laboratory of Medical Biochemistry, Department of Pharmaceutical Sciences, University of Antwerp, Antwerp, 2610, Belgium
| | - Stanislav Trashin
- AXES Research Group, Department of Bioscience Engineering, University of Antwerp, Antwerp, 2020, Belgium
| | - Ronny Blust
- Sphere Research Group, Department of Biology, University of Antwerp, Antwerp, 2020, Belgium
| | - Frank Sobott
- BAMS Research Group, Department of Chemistry, University of Antwerp, Antwerp, 2020, Belgium
- Astbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, University of Leeds, Leeds LS2 9JT, United Kingdom
| | - Annemieke Madder
- Organic and Biomimetic Chemistry Research Group, Department of Organic and Macromolecular Chemistry, Ghent University, Ghent, 9000, Belgium
| | - José C. Martins
- NMR and Structure Analysis Research Group, Department of Organic and Macromolecular Chemistry, Ghent University, Ghent, 9000, Belgium
| | - Karolien De Wael
- AXES Research Group, Department of Bioscience Engineering, University of Antwerp, Antwerp, 2020, Belgium
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Morales-Yánez F, Trashin S, Sariego I, Roucher C, Paredis L, Chico M, De Wael K, Muyldermans S, Cooper P, Polman K. Electrochemical detection of Toxocara canis excretory-secretory antigens in children from rural communities in Esmeraldas Province, Ecuador: association between active infection and high eosinophilia. Parasit Vectors 2020; 13:245. [PMID: 32398157 PMCID: PMC7216625 DOI: 10.1186/s13071-020-04113-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2020] [Accepted: 04/29/2020] [Indexed: 01/08/2023] Open
Abstract
Background The diagnosis of active Toxocara canis infections in humans is challenging. Larval stages of T. canis do not replicate in human tissues and disease may result from infection with a single T. canis larva. Recently, we developed a nanobody-based electrochemical magnetosensor assay with superior sensitivity to detect T. canis excretory-secretory (TES) antigens. Here, we evaluate the performance of the assay in children from an Ecuadorian birth cohort that followed children to five years of age. Methods Samples were selected based on the presence of peripheral blood eosinophilia and relative eosinophil counts. The samples were analyzed by the nanobody-based electrochemical magnetosensor assay, which utilizes a bivalent biotinylated nanobody as capturing agent on the surface of streptavidin pre-coated paramagnetic beads. Detection was performed by a different nanobody chemically labelled with horseradish peroxidase. Results Of 87 samples tested, 33 (38%) scored positive for TES antigen recognition by the electrochemical magnetosensor assay. The average concentration of TES antigen in serum was 2.1 ng/ml (SD = 1.1). The positive result in the electrochemical assay was associated with eosinophilia > 19% (P = 0.001). Parasitological data were available for 57 samples. There was no significant association between positivity by the electrochemical assay and the presence of other soil-transmitted helminth infections. Conclusions Our nanobody-based electrochemical assay provides highly sensitive quantification of TES antigens in serum and has potential as a valuable tool for the diagnosis of active human toxocariasis.![]()
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Affiliation(s)
- Francisco Morales-Yánez
- Laboratory of Cellular and Molecular Immunology, Vrije Universiteit Brussel, Brussels, Belgium. .,Department of Biomedical Sciences, Unit of Medical Helminthology, Institute of Tropical Medicine, Antwerp, Belgium.
| | - Stanislav Trashin
- AXES Research Group, Department of Chemistry, University of Antwerp, Antwerp, Belgium
| | - Idalia Sariego
- Institute of Tropical Medicine "Pedro Kourí", Havana, Cuba
| | - Clémentine Roucher
- Department of Biomedical Sciences, Unit of Medical Helminthology, Institute of Tropical Medicine, Antwerp, Belgium
| | - Linda Paredis
- Department of Biomedical Sciences, Unit of Medical Helminthology, Institute of Tropical Medicine, Antwerp, Belgium
| | - Martha Chico
- Fundación Ecuatoriana Para Investigación en Salud, Quito, Ecuador
| | - Karolien De Wael
- AXES Research Group, Department of Chemistry, University of Antwerp, Antwerp, Belgium
| | - Serge Muyldermans
- Laboratory of Cellular and Molecular Immunology, Vrije Universiteit Brussel, Brussels, Belgium
| | - Philip Cooper
- Fundación Ecuatoriana Para Investigación en Salud, Quito, Ecuador.,Facultad de Ciencias Médicas, de la Salud y la Vida, Universidad Internacional del Ecuador, Quito, Ecuador.,Institute of Infection and Immunity, St George's University of London, London, UK
| | - Katja Polman
- Department of Biomedical Sciences, Unit of Medical Helminthology, Institute of Tropical Medicine, Antwerp, Belgium.,Department of Health Sciences, Section Infectious Diseases, VU University Amsterdam, Amsterdam, The Netherlands
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Rahemi V, Trashin S, Hafideddine Z, Van Doorslaer S, Meynen V, Gorton L, De Wael K. Amperometric Flow-Injection Analysis of Phenols Induced by Reactive Oxygen Species Generated under Daylight Irradiation of Titania Impregnated with Horseradish Peroxidase. Anal Chem 2020; 92:3643-3649. [PMID: 31985211 DOI: 10.1021/acs.analchem.9b04617] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Titanium dioxide (TiO2) is a unique material for biosensing applications due to its capability of hosting enzymes. For the first time, we show that TiO2 can accumulate reactive oxygen species (ROS) under daylight irradiation and can support the catalytic cycle of horseradish peroxidase (HRP) without the need of H2O2 to be present in the solution. Phenolic compounds, such as hydroquinone (HQ) and 4-aminophenol (4-AP), were detected amperometrically in flow-injection analysis (FIA) mode via the use of an electrode modified with TiO2 impregnated with HRP. In contrast to the conventional detection scheme, no H2O2 was added to the analyte solution. Basically, the inherited ability of TiO2 to generate reactive oxygen species is used as a strategy to avoid adding H2O2 in the solution during the detection of phenolic compounds. Electron paramagnetic resonance (EPR) spectroscopy indicates the presence of ROS on titania which, in interaction with HRP, initiate the electrocatalysis toward phenolic compounds. The amperometric response to 4-AP was linear in the concentration range between 0.05 and 2 μM. The sensitivity was 0.51 A M-1 cm-2, and the limit of detection (LOD) 26 nM. The proposed sensor design opens new opportunities for the detection of phenolic traces by HRP-based electrochemical biosensors, yet in a more straightforward and sensitive way following green chemistry principles of avoiding the use of reactive and harmful chemical, such as H2O2.
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Affiliation(s)
- Vanoushe Rahemi
- AXES Research Group, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp, Belgium
| | - Stanislav Trashin
- AXES Research Group, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp, Belgium
| | - Zainab Hafideddine
- BIMEF Laboratory, University of Antwerp, Universiteitsplein 1, B-2610 Wilrijk, Belgium.,PPES Research Group, University of Antwerp, Universiteitsplein 1, B-2610 Wilrijk, Belgium
| | - Sabine Van Doorslaer
- BIMEF Laboratory, University of Antwerp, Universiteitsplein 1, B-2610 Wilrijk, Belgium
| | - Vera Meynen
- Laboratory of Adsorption and Catalysis (LADCA), University of Antwerp, Universiteitsplein 1, B-2610 Wilrijk, Belgium
| | - Lo Gorton
- Department of Analytical Chemistry/Biochemistry and Structural Biology, Lund University, PO Box 124, SE-22100 Lund, Sweden
| | - Karolien De Wael
- AXES Research Group, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerp, Belgium.,Nanolab Center of Excellence, University of Antwerp, 2610 Wilrijk, Belgium
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12
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Meysman FJR, Cornelissen R, Trashin S, Bonné R, Martinez SH, van der Veen J, Blom CJ, Karman C, Hou JL, Eachambadi RT, Geelhoed JS, Wael KD, Beaumont HJE, Cleuren B, Valcke R, van der Zant HSJ, Boschker HTS, Manca JV. A highly conductive fibre network enables centimetre-scale electron transport in multicellular cable bacteria. Nat Commun 2019; 10:4120. [PMID: 31511526 PMCID: PMC6739318 DOI: 10.1038/s41467-019-12115-7] [Citation(s) in RCA: 57] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Accepted: 08/19/2019] [Indexed: 11/25/2022] Open
Abstract
Biological electron transport is classically thought to occur over nanometre distances, yet recent studies suggest that electrical currents can run along centimetre-long cable bacteria. The phenomenon remains elusive, however, as currents have not been directly measured, nor have the conductive structures been identified. Here we demonstrate that cable bacteria conduct electrons over centimetre distances via highly conductive fibres embedded in the cell envelope. Direct electrode measurements reveal nanoampere currents in intact filaments up to 10.1 mm long (>2000 adjacent cells). A network of parallel periplasmic fibres displays a high conductivity (up to 79 S cm−1), explaining currents measured through intact filaments. Conductance rapidly declines upon exposure to air, but remains stable under vacuum, demonstrating that charge transfer is electronic rather than ionic. Our finding of a biological structure that efficiently guides electrical currents over long distances greatly expands the paradigm of biological charge transport and could enable new bio-electronic applications. Cable bacteria’ form long multicellular filaments that can transfer electrical currents over centimetre-long distances. Here, Meysman et al. show that the electrical currents run along highly conductive fibres embedded in the cell envelope, and charge transfer is electronic rather than ionic.
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Affiliation(s)
- Filip J R Meysman
- Department of Biology, University of Antwerp, Universiteitsplein 1, B-2610, Wilrijk, Belgium. .,Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629HZ, Delft, The Netherlands.
| | - Rob Cornelissen
- X-LAB, Hasselt University, Agoralaan D, B-3590, Diepenbeek, Belgium
| | - Stanislav Trashin
- AXES Research group, Department of Chemistry, University of Antwerp, Groenenborgerlaan 171, B-2020, Antwerpen, Belgium
| | - Robin Bonné
- X-LAB, Hasselt University, Agoralaan D, B-3590, Diepenbeek, Belgium
| | - Silvia Hidalgo Martinez
- Department of Biology, University of Antwerp, Universiteitsplein 1, B-2610, Wilrijk, Belgium
| | - Jasper van der Veen
- Department of Quantum Nanoscience, Kavli Institute of Nanoscience, Technical University Delft, Lorentzweg 1, 2628 CJ, Delft, The Netherlands
| | - Carsten J Blom
- Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, van der Maasweg 9, 2629 HZ, Delft, The Netherlands
| | - Cheryl Karman
- Department of Biology, University of Antwerp, Universiteitsplein 1, B-2610, Wilrijk, Belgium.,AXES Research group, Department of Chemistry, University of Antwerp, Groenenborgerlaan 171, B-2020, Antwerpen, Belgium
| | - Ji-Ling Hou
- X-LAB, Hasselt University, Agoralaan D, B-3590, Diepenbeek, Belgium
| | | | - Jeanine S Geelhoed
- Department of Biology, University of Antwerp, Universiteitsplein 1, B-2610, Wilrijk, Belgium
| | - Karolien De Wael
- AXES Research group, Department of Chemistry, University of Antwerp, Groenenborgerlaan 171, B-2020, Antwerpen, Belgium
| | - Hubertus J E Beaumont
- Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, van der Maasweg 9, 2629 HZ, Delft, The Netherlands
| | - Bart Cleuren
- Theoretical Physics, Hasselt University, Agoralaan D, B-3590, Diepenbeek, Belgium
| | - Roland Valcke
- Molecular and Physical Plant Physiology, Hasselt University, Agoralaan D, B-3590, Diepenbeek, Belgium
| | - Herre S J van der Zant
- Department of Quantum Nanoscience, Kavli Institute of Nanoscience, Technical University Delft, Lorentzweg 1, 2628 CJ, Delft, The Netherlands
| | - Henricus T S Boschker
- Department of Biology, University of Antwerp, Universiteitsplein 1, B-2610, Wilrijk, Belgium.,Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629HZ, Delft, The Netherlands
| | - Jean V Manca
- X-LAB, Hasselt University, Agoralaan D, B-3590, Diepenbeek, Belgium
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13
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Morales-Yánez F, Trashin S, Hermy M, Sariego I, Polman K, Muyldermans S, De Wael K. Fast One-Step Ultrasensitive Detection of Toxocara canis Antigens by a Nanobody-Based Electrochemical Magnetosensor. Anal Chem 2019; 91:11582-11588. [PMID: 31429269 DOI: 10.1021/acs.analchem.9b01687] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Human toxocariasis (HT) is a cosmopolitan zoonotic disease caused by the migration of the larval stage of the roundworm Toxocara canis. Current HT diagnostic methods do not discriminate between active and past infections. Here, we present a method to quantify Toxocara excretory/secretory antigen, aiming to identify active cases of HT. High specificity is achieved by employing nanobodies (Nbs), single domain antigen binding fragments from camelid heavy chain-only antibodies. High sensitivity is obtained by the design of an electrochemical magnetosensor with an amperometric read-out. Reliable detection of TES antigen at 10 and 30 pg/mL level was demonstrated in phosphate buffered saline and serum, respectively. Moreover, the assay showed no cross-reactivity with other nematode antigens. To our knowledge, this is the most sensitive method to quantify the TES antigen so far. It also has great potential to develop point of care diagnostic systems in other conditions where high sensitivity and specificity are required.
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Affiliation(s)
- Francisco Morales-Yánez
- Laboratory of Cellular and Molecular Immunology , Vrije Universiteit Brussel , Brussels , Belgium.,Department of Biomedical Sciences , Institute of Tropical Medicine , Antwerp , Belgium
| | - Stanislav Trashin
- AXES Research Group, Department of Chemistry , University of Antwerp , Antwerp , Belgium
| | - Marie Hermy
- Department of Biomedical Sciences , Institute of Tropical Medicine , Antwerp , Belgium
| | - Idalia Sariego
- Department of Parasitology , Institute of Tropical Medicine Pedro Kourí , Havana , Cuba
| | - Katja Polman
- Department of Biomedical Sciences , Institute of Tropical Medicine , Antwerp , Belgium
| | - Serge Muyldermans
- Laboratory of Cellular and Molecular Immunology , Vrije Universiteit Brussel , Brussels , Belgium
| | - Karolien De Wael
- AXES Research Group, Department of Chemistry , University of Antwerp , Antwerp , Belgium
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14
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Neven L, Shanmugam ST, Rahemi V, Trashin S, Sleegers N, Carrión EN, Gorun SM, De Wael K. Optimized Photoelectrochemical Detection of Essential Drugs Bearing Phenolic Groups. Anal Chem 2019; 91:9962-9969. [DOI: 10.1021/acs.analchem.9b01706] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
- Liselotte Neven
- AXES Research
Group, Department of Chemistry, University of Antwerp, 2610 Antwerp, Belgium
| | | | - Vanoushe Rahemi
- AXES Research
Group, Department of Chemistry, University of Antwerp, 2610 Antwerp, Belgium
| | - Stanislav Trashin
- AXES Research
Group, Department of Chemistry, University of Antwerp, 2610 Antwerp, Belgium
| | - Nick Sleegers
- AXES Research
Group, Department of Chemistry, University of Antwerp, 2610 Antwerp, Belgium
| | - Erik N. Carrión
- Department of Chemistry and Biochemistry and the Center for Functional Materials, Seton Hall University, South Orange, New Jersey 07079, United States
| | - Sergiu M. Gorun
- Department of Chemistry and Biochemistry and the Center for Functional Materials, Seton Hall University, South Orange, New Jersey 07079, United States
| | - Karolien De Wael
- AXES Research
Group, Department of Chemistry, University of Antwerp, 2610 Antwerp, Belgium
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15
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Abstract
Enzyme-based electrochemical biosensors are an inspiration for the development of (bio)analytical techniques. However, the instability and reproducibility of the reactivity of enzymes, combined with the need for chemical reagents for sensing remain challenges for the construction of useful devices. Here we present a sensing strategy inspired by the advantages of enzymes and photoelectrochemical sensing, namely the integration of aerobic photocatalysis and electrochemical analysis. The photosensitizer, a bioinspired perfluorinated Zn phthalocyanine, generates singlet-oxygen from air under visible light illumination and oxidizes analytes, yielding electrochemically-detectable products while resisting the oxidizing species it produces. Compared with enzymatic detection methods, the proposed strategy uses air instead of internally added reactive reagents, features intrinsic baseline correction via on/off light switching and shows C-F bonds-type enhanced stability. It also affords selectivity imparted by the catalytic process and nano-level detection, such as 20 nM amoxicillin in μl sample volumes. Application of enzyme-based sensors is usually affected by costs, enzyme stability and immobilization and use of additional chemicals. Here, the authors show a cost-effective and robust photoelectrochemical detection system that can mimic enzymatic sensors using only air and light.
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16
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Cuypers B, Vermeylen S, Hammerschmid D, Trashin S, Rahemi V, Konijnenberg A, De Schutter A, Cheng CHC, Giordano D, Verde C, De Wael K, Sobott F, Dewilde S, Van Doorslaer S. Antarctic fish versus human cytoglobins - The same but yet so different. J Inorg Biochem 2017; 173:66-78. [PMID: 28501743 DOI: 10.1016/j.jinorgbio.2017.04.025] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2016] [Revised: 03/23/2017] [Accepted: 04/26/2017] [Indexed: 10/19/2022]
Abstract
The cytoglobins of the Antarctic fish Chaenocephalus aceratus and Dissostichus mawsoni have many features in common with human cytoglobin. These cytoglobins are heme proteins in which the ferric and ferrous forms have a characteristic hexacoordination of the heme iron, i.e. axial ligation of two endogenous histidine residues, as confirmed by electron paramagnetic resonance, resonance Raman and optical absorption spectroscopy. The combined spectroscopic analysis revealed only small variations in the heme-pocket structure, in line with the small variations observed for the redox potential. Nevertheless, some striking differences were also discovered. Resonance Raman spectroscopy showed that the stabilization of an exogenous heme ligand, such as CO, occurs differently in human cytoglobin in comparison with Antarctic fish cytoglobins. Furthermore, while it has been extensively reported that human cytoglobin is essentially monomeric and can form an intramolecular disulfide bridge that can influence the ligand binding kinetics, 3D modeling of the Antarctic fish cytoglobins indicates that the cysteine residues are too far apart to form such an intramolecular bridge. Moreover, gel filtration and mass spectrometry reveal the occurrence of non-covalent multimers (up to pentamers) in the Antarctic fish cytoglobins that are formed at low concentrations. Stabilization of these oligomers by disulfide-bridge formation is possible, but not essential. If intermolecular disulfide bridges are formed, they influence the heme-pocket structure, as is shown by EPR measurements.
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Affiliation(s)
- Bert Cuypers
- BIMEF Laboratory, Department of Physics, University of Antwerp, Belgium
| | - Stijn Vermeylen
- PPES Laboratory, Department of Biomedical Sciences, University of Antwerp, Belgium
| | - Dietmar Hammerschmid
- PPES Laboratory, Department of Biomedical Sciences, University of Antwerp, Belgium; BAMS Laboratory, Department of Chemistry, University of Antwerp, Belgium
| | - Stanislav Trashin
- AXES Laboratory, Department of Chemistry, University of Antwerp, Belgium
| | - Vanoushe Rahemi
- AXES Laboratory, Department of Chemistry, University of Antwerp, Belgium
| | | | - Amy De Schutter
- BIMEF Laboratory, Department of Physics, University of Antwerp, Belgium
| | | | - Daniela Giordano
- Institute of Biosciences and BioResources, CNR, Naples, Italy; Stazione Zoologica Anton Dohrn, Naples, Italy
| | - Cinzia Verde
- Institute of Biosciences and BioResources, CNR, Naples, Italy; Department of Biology, University Roma 3, Rome, Italy; Stazione Zoologica Anton Dohrn, Naples, Italy
| | - Karolien De Wael
- AXES Laboratory, Department of Chemistry, University of Antwerp, Belgium
| | - Frank Sobott
- BAMS Laboratory, Department of Chemistry, University of Antwerp, Belgium
| | - Sylvia Dewilde
- PPES Laboratory, Department of Biomedical Sciences, University of Antwerp, Belgium
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17
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Lybaert J, Trashin S, Maes BUW, De Wael K, Abbaspour Tehrani K. Cooperative Electrocatalytic and Chemoselective Alcohol Oxidation by Shvo's Catalyst. Adv Synth Catal 2017. [DOI: 10.1002/adsc.201600783] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Jeroen Lybaert
- Organic Synthesis, Department of Chemistry; University of Antwerp; Groenenborgerlaan 171 2020 Antwerp Belgium
- AXES, Department of Chemistry; University of Antwerp; Groenenborgerlaan 171 2020 Antwerp Belgium
| | - Stanislav Trashin
- AXES, Department of Chemistry; University of Antwerp; Groenenborgerlaan 171 2020 Antwerp Belgium
| | - Bert U. W. Maes
- Organic Synthesis, Department of Chemistry; University of Antwerp; Groenenborgerlaan 171 2020 Antwerp Belgium
| | - Karolien De Wael
- AXES, Department of Chemistry; University of Antwerp; Groenenborgerlaan 171 2020 Antwerp Belgium
| | - Kourosch Abbaspour Tehrani
- Organic Synthesis, Department of Chemistry; University of Antwerp; Groenenborgerlaan 171 2020 Antwerp Belgium
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18
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Trashin S, de Jong M, Luyckx E, Dewilde S, De Wael K. Electrochemical Evidence for Neuroglobin Activity on NO at Physiological Concentrations. J Biol Chem 2016; 291:18959-66. [PMID: 27402851 DOI: 10.1074/jbc.m116.730176] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2016] [Indexed: 11/06/2022] Open
Abstract
The true function of neuroglobin (Ngb) and, particularly, human Ngb (NGB) has been under debate since its discovery 15 years ago. It has been expected to play a role in oxygen binding/supply, but a variety of other functions have been put forward, including NO dioxygenase activity. However, in vitro studies that could unravel these potential roles have been hampered by the lack of an Ngb-specific reductase. In this work, we used electrochemical measurements to investigate the role of an intermittent internal disulfide bridge in determining NO oxidation kinetics at physiological NO concentrations. The use of a polarized electrode to efficiently interconvert the ferric (Fe(3+)) and ferrous (Fe(2+)) forms of an immobilized NGB showed that the disulfide bridge both defines the kinetics of NO dioxygenase activity and regulates appearance of the free ferrous deoxy-NGB, which is the redox active form of the protein in contrast to oxy-NGB. Our studies further identified a role for the distal histidine, interacting with the hexacoordinated iron atom of the heme, in oxidation kinetics. These findings may be relevant in vivo, for example, in blocking apoptosis by reduction of ferric cytochrome c, and gentle tuning of NO concentration in the tissues.
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Affiliation(s)
| | | | - Evi Luyckx
- Biomedical Sciences, University of Antwerp, 2010 Antwerp, Belgium
| | - Sylvia Dewilde
- Biomedical Sciences, University of Antwerp, 2010 Antwerp, Belgium
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19
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Affiliation(s)
- Stanislav Trashin
- AXES Research Group, Department of Chemistry; University of Antwerp; Groenenborgerlaan 171 2010 Antwerpen Belgium
| | - Mats de Jong
- AXES Research Group, Department of Chemistry; University of Antwerp; Groenenborgerlaan 171 2010 Antwerpen Belgium
| | - Vera Meynen
- Laboratory of Adsorption and Catalysis (LADCA); Department of Chemistry; University of Antwerp; Universiteitsplein 1 2610 Wilrijk Belgium
| | - Sylvia Dewilde
- PPES Research Group, Department of Biomedical Sciences; University of Antwerp; Universiteitsplein 1 2610 Wilrijk Belgium
| | - Karolien De Wael
- AXES Research Group, Department of Chemistry; University of Antwerp; Groenenborgerlaan 171 2010 Antwerpen Belgium
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20
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De Henau S, Tilleman L, Vangheel M, Luyckx E, Trashin S, Pauwels M, Germani F, Vlaeminck C, Vanfleteren JR, Bert W, Pesce A, Nardini M, Bolognesi M, De Wael K, Moens L, Dewilde S, Braeckman BP. A redox signalling globin is essential for reproduction in Caenorhabditis elegans. Nat Commun 2015; 6:8782. [PMID: 26621324 PMCID: PMC4686822 DOI: 10.1038/ncomms9782] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2015] [Accepted: 10/02/2015] [Indexed: 12/17/2022] Open
Abstract
Moderate levels of reactive oxygen species (ROS) are now recognized as redox signalling molecules. However, thus far, only mitochondria and NADPH oxidases have been identified as cellular sources of ROS in signalling. Here we identify a globin (GLB-12) that produces superoxide, a type of ROS, which serves as an essential signal for reproduction in C. elegans. We find that GLB-12 has an important role in the regulation of multiple aspects in germline development, including germ cell apoptosis. We further describe how GLB-12 displays specific molecular, biochemical and structural properties that allow this globin to act as a superoxide generator. In addition, both an intra- and extracellular superoxide dismutase act as key partners of GLB-12 to create a transmembrane redox signal. Our results show that a globin can function as a driving factor in redox signalling, and how this signal is regulated at the subcellular level by multiple control layers.
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Affiliation(s)
- Sasha De Henau
- Department of Biology, Ghent University, Ghent B-9000, Belgium
| | - Lesley Tilleman
- Department of Biomedical Sciences, University of Antwerp, Antwerp B-2000, Belgium
| | | | - Evi Luyckx
- Department of Biomedical Sciences, University of Antwerp, Antwerp B-2000, Belgium
| | - Stanislav Trashin
- Department of Chemistry, University of Antwerp, Antwerp B-2000, Belgium
| | - Martje Pauwels
- Department of Chemistry, University of Antwerp, Antwerp B-2000, Belgium
| | - Francesca Germani
- Department of Biomedical Sciences, University of Antwerp, Antwerp B-2000, Belgium
| | | | | | - Wim Bert
- Department of Biology, Ghent University, Ghent B-9000, Belgium
| | - Alessandra Pesce
- Department of Physics, University of Genova, Genova I-16146, Italy
| | - Marco Nardini
- Department of Biosciences, University of Milano, Milano I-20133, Italy
| | - Martino Bolognesi
- Department of Biosciences, University of Milano, Milano I-20133, Italy
- CNR-IBF and CIMAINA, University of Milano, Milano I-20133, Italy
| | - Karolien De Wael
- Department of Chemistry, University of Antwerp, Antwerp B-2000, Belgium
| | - Luc Moens
- Department of Biomedical Sciences, University of Antwerp, Antwerp B-2000, Belgium
| | - Sylvia Dewilde
- Department of Biomedical Sciences, University of Antwerp, Antwerp B-2000, Belgium
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21
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Borhani HA, Berghmans H, Trashin S, De Wael K, Fago A, Moens L, Habibi-Rezaei M, Dewilde S. Kinetic properties and heme pocket structure of two domains of the polymeric hemoglobin of Artemia in comparison with the native molecule. Biochim Biophys Acta 2015; 1854:1307-16. [PMID: 26004089 DOI: 10.1016/j.bbapap.2015.05.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2015] [Revised: 04/30/2015] [Accepted: 05/14/2015] [Indexed: 10/23/2022]
Abstract
In this project, we studied some physicochemical properties of two different globin domains of the polymeric hemoglobin of the brine shrimp Artemia salina and compared them with those of the native molecule. Two domains (AsHbC1D1 and AsHbC1D5) were cloned and expressed in BL21(DE3)pLysS strain of Escherichia coli. The recombinant proteins as well as the native hemoglobin (AfHb) were purified from bacteria and frozen Artemia, respectively by standard chromatographic methods and assessed by SDS-PAGE. The heme environment of these proteins was studied by optical spectroscopy and ligand-binding kinetics (e.g. CO association and O2 binding affinity) were measured for the two recombinant proteins and the native hemoglobin. This indicates that the CO association rate for AsHbC1D1 is higher than that of AsHbC1D5 and AfHb, while the calculated P50 value for AsHbC1D1 is lower than that of AsHbC1D5 and AfHb. The geminate and bimolecular rebinding parameters indicate a significant difference between both domains. Moreover, EPR results showed that the heme pocket in AfHb is in a more closed conformation than the heme pocket in myoglobin. Finally, the reduction potential of -0.13V versus the standard hydrogen electrode was determined for AfHb by direct electrochemical measurements. It is about 0.06V higher than the potential of the single domain AsHbC1D5. This work shows that each domain in the hemoglobin of Artemia has different characteristics of ligand binding.
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Affiliation(s)
- Heshmat Akbari Borhani
- School of Biology, College of Science, University of Tehran, Tehran, Iran; Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium.
| | - Herald Berghmans
- Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium.
| | | | - Karolien De Wael
- Department of Chemistry, University of Antwerp, Antwerp, Belgium.
| | - Angela Fago
- Department of Bioscience, Zoophysiology, Aarhus University, Aarhus, Denmark.
| | - Luc Moens
- Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium.
| | - Mehran Habibi-Rezaei
- School of Biology, College of Science, University of Tehran, Tehran, Iran; Nano-Biomedicine Center of Excellence, Nanoscience and Nanotechnology, Research Center, University of Tehran, Tehran, Iran.
| | - Sylvia Dewilde
- Department of Biomedical Sciences, University of Antwerp, Antwerp, Belgium.
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22
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23
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Anaf W, Trashin S, Schalm O, van Dorp D, Janssens K, De Wael K. Electrochemical Photodegradation Study of Semiconductor Pigments: Influence of Environmental Parameters. Anal Chem 2014; 86:9742-8. [DOI: 10.1021/ac502303z] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Willemien Anaf
- AXES,
Department of Chemistry, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerpen, Belgium
| | - Stanislav Trashin
- AXES,
Department of Chemistry, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerpen, Belgium
| | - Olivier Schalm
- Conservation
Studies, University of Antwerp, Blindestraat 9, 2000 Antwerpen, Belgium
| | | | - Koen Janssens
- AXES,
Department of Chemistry, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerpen, Belgium
| | - Karolien De Wael
- AXES,
Department of Chemistry, University of Antwerp, Groenenborgerlaan 171, 2020 Antwerpen, Belgium
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24
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Dubinina T, Dyumaeva D, Trashin S, Sedova M, Karpo A, Krasovskii V, Tomilova L. Synthesis and Study of Physicochemical Properties of New Substituted Tetrathieno[2,3-b]porphyrazines. MACROHETEROCYCLES 2012. [DOI: 10.6060/mhc2012.120678d] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Verweij MM, Hagendorens MM, Trashin S, Cucu T, De Meulenaer B, Devreese B, Bridts CH, De Clerck LS, Ebo DG. Age-dependent sensitization to the 7S-vicilin-like protein Cor a 11 from hazelnut (Corylus avellana) in a birch-endemic region. J Investig Allergol Clin Immunol 2012; 22:245-251. [PMID: 22812192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/01/2023] Open
Abstract
BACKGROUND Hazelnut (Corylus avellana) allergy exhibits age and geographically distinct sensitization patterns that have not yet been fully resolved. OBJECTIVE To study sensitization to Cor a 11 in different age groups of hazelnut-allergic patients and infants with atopic dermatitis (AD) sensitized to hazelnut in a birch-endemic region. METHODS Sera from 80 hazelnut-allergic patients, 33 infants under 1 year of age with AD (24 sensitized and 9 not sensitized to hazelnut), 32 healthy control individuals, and 29 birch pollen-allergic but hazelnut-tolerant individuals were tested for immunoglobulin (Ig) E reactivity to Cor a 11 by ImmunoCAP. IgE reactivity to Cor a 1.01, Cor a 1.04, Cor a 8, and Cor a 9 was studied by ISAC microarray. RESULTS Forty patients (22 preschool children, 10 schoolchildren, and 8 adults) with systemic reactions on consumption of hazelnut were sensitized to Cor a 11 (respective rates of 36%, 40%, and 12.5%). Forty patients (6 preschool children, 10 schoolchildren, and 24 adults) reported oral allergy syndrome but only 2 of them (of preschool age) were sensitized to Cor a 11. Two (8%) of the AD infants sensitized to hazelnut showed IgE reactivity to Cor a 11. This reactivity was not observed in any of the AD infants without sensitization to hazelnut, in any of the birch-pollen allergic patients without hazelnut allergy, or in any of the healthy control individuals. CONCLUSION Sensitization to Cor a 11 in a birch-endemic region is predominantly found in children with severe hazelnut allergy, a finding that is consistent with observations concerning sensitization to Cor a 9.
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Affiliation(s)
- M M Verweij
- Faculty of Medicine, Department of Immunology-Allergology-Rheumatology, University of Antwerp, Antwerp, Belgium
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