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Urbano-Bonilla A, Londoño-Burbano A, Carvalho TP. A new species of rheophilic armored catfish of Rineloricaria (Siluriformes: Loricariidae) from the Vaupés River, Amazonas basin, Colombia. J Fish Biol 2023; 103:1073-1084. [PMID: 37427785 DOI: 10.1111/jfb.15500] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Revised: 07/04/2023] [Accepted: 07/05/2023] [Indexed: 07/11/2023]
Abstract
A new rheophilic species of the genus Rineloricaria is described for the Amazon basin in Colombia. Rineloricaria cachivera n. sp. differs from its congeners by having anterior to the first predorsal plate, an inconspicuous saddle-like mark; the presence of dark, diffuse blotches, present as unified dark colouration along most of the dorsal portion of the head, without bands or spots on the head; a long snout that occupies more than half the head length (HL), between 58.0% and 66.3% HL; a naked portion on the cleithral area from the border of lower lip reaching the origin of pectoral fin; and by having five series of lateral plates in longitudinal rows below the dorsal fin. The new species is morphologically similar to Rineloricaria daraha; however, it can be distinguished by the presence of six branched pectoral fin rays (vs. seven) and the lower lip surface with short thick papillae (vs. long finger papillae). An identification key to the Rineloricaria species of the Amazon River basin in Colombia is provided. The new species is herein categorized as Least Concern, following the IUCN criteria.
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Affiliation(s)
- Alexander Urbano-Bonilla
- Departamento de Biología, Facultad de Ciencias, Laboratorio de Ictiología, Pontificia Universidad Javeriana, Bogotá, Colombia
| | - Alejandro Londoño-Burbano
- Departamento de Vertebrados, Universidade Federal do Rio de Janeiro, Museu Nacional, Setor de Ictiologia Quinta da Boa Vista, Rio de Janeiro, Brazil
| | - Tiago P Carvalho
- Departamento de Biología, Facultad de Ciencias, Laboratorio de Ictiología, Pontificia Universidad Javeriana, Bogotá, Colombia
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2
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Wendt EW, Malabarba LR, Braga MP, Boeger WA, Landis M, Carvalho TP. Phylogeny, species delimitation, and ecological and morphological diversity of Characithecium (Monogenoidea: Dactylogyridae). Parasitology 2022:1-54. [PMID: 35236513 DOI: 10.1017/s0031182022000221] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Abstract
Characithecium (Monogenoidea, Dactylogyridae) is a genus containing nine species that live on the gills of a characid clade containing genera Astyanax, Andromakhe, Psalidodon and Oligosarcus (Characiformes, Characidae) in South and Central America. Earlier studies suggest a tight coevolutionary history between these parasites and their hosts mainly due to the phylogenetic proximity between these genera of fish. Hence, this study explores phylogenetic relationships, species limits and extrinsic factors (geography and ecology) explaining parasite prevalence. To understand the evolutionary history of the genus, we constructed a time-calibrated phylogenetic hypothesis, which includes eight of the nine known species of Characithecium sampled from a broad spectrum of host species. The phylogeny supports the monophyly of Characithecium, with its most recent common ancestor dating from the Miocene. Using generalized mixed-yule coalescent and Bayesian Poisson tree process methods, species delimitation analyses suggested fewer species than the proposed delimitation based on morphology alone, recovering four and six entities, respectively. The results indicate that species of Characithecium have wider geographical and host distribution and higher prevalence on Oligosarcus species compared to Astyanax and Psalidodon. Correlation between parasite prevalence and biotic and abiotic traits, based on generalized linear models, indicates that the frequency of occurrence of different species of Characithecium is associated with distinct factors, such as host genus, high altitudes, rivers and streams, and different ecoregions. Our results suggest that species of Characithecium are highly opportunistic, exploring resources in different manner as our data reveal the ability of these parasites to explore a diverse environment of variable biotic (e.g. hosts) and abiotic features.
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Affiliation(s)
- Emília W Wendt
- Laboratório de Ictiologia, Departamento de Zoologia, Universidade Federal do Rio Grande do Sul - UFRGS, Av. Bento Gonçalves, 9500, Bloco 4, prédio 43435, 91501-970Porto Alegre, RS, Brazil
| | - Luiz R Malabarba
- Laboratório de Ictiologia, Departamento de Zoologia, Universidade Federal do Rio Grande do Sul - UFRGS, Av. Bento Gonçalves, 9500, Bloco 4, prédio 43435, 91501-970Porto Alegre, RS, Brazil
| | - Mariana P Braga
- Department of Biology, Washington University in St. Louis, St. Louis, MO, 63130, USA
| | - Walter A Boeger
- Biological Interactions and Departamento de Zoologia, Centro Politécnico, Setor de Ciências Biológicas, Universidade Federal do Paraná (UFPR), Caixa Postal 19073, CEP 81531-980, Curitiba, Paraná, Brazil
| | - Michael Landis
- Department of Biology, Washington University in St. Louis, St. Louis, MO, 63130, USA
| | - Tiago P Carvalho
- Laboratório de Ictiologia, Departamento de Zoologia, Universidade Federal do Rio Grande do Sul - UFRGS, Av. Bento Gonçalves, 9500, Bloco 4, prédio 43435, 91501-970Porto Alegre, RS, Brazil
- Laboratorio de Ictiología, Unidad de Ecología y Sistemática (UNESIS), Departamento de Biología, Facultad de Ciencias, Pontificia Universidad Javeriana, Carrera 7 N° 43-82, Bogotá D.C., Colombia
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Ito PMM, Carvalho TP, Pavanelli CS, Vanegas-Ríos JA, Malabarba LR. Phylogenetic relationships and description of two new species of Diapoma (Characidae: Stevardiinae) from the La Plata River basin. Neotrop ichthyol 2022. [DOI: 10.1590/1982-0224-2021-0115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Abstract Herein we describe two new species of Diapoma, one from the Negro River, a tributary of the Uruguay River in Brazil and Uruguay, and one from the Iguaçu River, in Brazil and Argentina. The new species from the Negro River basin is distinguished from its congeners by the following combination of characters: a black narrow and conspicuous line restricted to the body horizontal septum, incomplete lateral line, tricuspid teeth in the inner series of the premaxilla, and a lower body depth at vertical through the dorsal-fin origin (29.3–32.8% SL in males and 27.7–33.3% SL in females). The new species from the Iguaçu River basin is distinguished from its congeners by the following combination of characters: a discontinuous lateral line, adipose fin hyaline, longer anal-fin base (26.5–32.4% SL), and a longitudinal black stripe along the median region of caudal-fin rays. Additionally, we updated the molecular phylogeny of the genus, including new sequences from these two new species and Diapoma thauma. An identification key for species of Diapoma is presented, modified from previous study.
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Affiliation(s)
| | - Tiago P. Carvalho
- Universidade Federal do Rio Grande do Sul(UFRGS), Brazil; Pontificia Universidad Javeriana, Colombia
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Donin LM, Ferrer J, Carvalho TP. Uncertainties and risks in delimiting species of Cambeva (Siluriformes: Trichomycteridae) with single-locus methods and geographically restricted data. Neotrop ichthyol 2022. [DOI: 10.1590/1982-0224-2022-0019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Abstract Cambeva contains species with complex taxonomy or poorly delimitated in terms of morphology and geopraphic distribution. We conducted an extensive review of Cambeva populations from coastal drainages of Southern to Southeastern Brazil to evaluate species geographic limits with an integrative analysis including morphological and molecular data (COI). We test if two single-locus methods, Bayesian Poisson Tree Processes (bPTP) and Generalized Mixed Yule Coalescent (GMYC), are efficient to delimit species boundaries in Cambeva by the comparison with the diagnosable morphological units. Using GMYC, we also evaluated the combination of tree and molecular clock priors to reconstruct the input phylogeny and assessed how well the implemented model fitted our empirical data. Eleven species were identified using a morphological diagnosability criterion: Cambeva balios, C. barbosae, C. botuvera, C. cubataonis, C. davisi, C. guaraquessaba, C. iheringi, C. tupinamba, and C. zonata and two treated as undescribed species. In contrast with previous knowledge, many of them have wider distribution and high intraspecific variation. Species delimitation based on single-locus demonstrated incongruences between the methods and strongly differed from the morphological delimitation. These disagreements and the violation of the GMYC model suggest that a single-locus data is insufficient to delimit Cambeva species and the failure may be attributable to events of mitochondrial introgression and incomplete lineage sorting.
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Chuctaya J, Encalada AC, Barragán KS, Torres ML, Rojas KE, Ochoa-Herrera V, Carvalho TP. New Ecuadorian records of the eyeless banjo catfish Micromyzon akamai (Siluriformes: Aspredinidae) expand the species range and reveal intraspecific morphological variation. J Fish Biol 2021; 98:1186-1191. [PMID: 33244758 DOI: 10.1111/jfb.14630] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Revised: 11/04/2020] [Accepted: 11/22/2020] [Indexed: 06/11/2023]
Abstract
Two specimens of Micromyzon akamai, an eyeless and miniaturized species previously known only from the deep channels of the eastern Amazon basin in Brazil, are reported from the Curaray River, a tributary of the Napo River in Ecuador. The new specimens are the first records of Micromyzon in the headwaters of the Amazon River and the first records of M. akamai outside Brazil. External morphological characters and a phylogenetic analysis of cytochrome c oxidase I (coI) gene support the identification of the new specimens as M. akamai. Nevertheless, the new specimens also indicate that some features previously hypothesized to be apomorphic for M. akamai are intraspecifically variable.
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Affiliation(s)
- Junior Chuctaya
- Departamento de Zoologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
- Departamento de Ictiología, Museo de Historia Natural, Universidad Nacional Mayor de San Marcos, Lima, Peru
| | - Andrea C Encalada
- Instituto BIOSFERA, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito, Diego de Robles y Vía Interoceánica, Quito, Ecuador
| | - Karla S Barragán
- Instituto BIOSFERA, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito, Diego de Robles y Vía Interoceánica, Quito, Ecuador
| | - Maria L Torres
- Instituto BIOSFERA, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito, Diego de Robles y Vía Interoceánica, Quito, Ecuador
- Laboratorio de Biotecnología Vegetal, Universidad San Francisco de Quito, Diego de Robles y Vía Interoceánica, Quito, Ecuador
| | - Karla E Rojas
- Laboratorio de Biotecnología Vegetal, Universidad San Francisco de Quito, Diego de Robles y Vía Interoceánica, Quito, Ecuador
| | - Valeria Ochoa-Herrera
- Instituto BIOSFERA, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito, Diego de Robles y Vía Interoceánica, Quito, Ecuador
- Colegio de Ciencias e Ingenierías, Universidad San Francisco de Quito, Diego de Robles y Vía Interoceánica, Quito, Ecuador
| | - Tiago P Carvalho
- Laboratorio de Ictiología, Unidad de Ecología y Sistemática (UNESIS), Departamento de Biología, Facultad de Ciencias, Pontificia Universidad Javeriana, Bogotá, Colombia
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Pio NL, Carvalho TP. Evidence on the paleodrainage connectivity during Pleistocene: Phylogeography of a hypoptopomatine endemic to southeastern Brazilian coastal drainages. Neotrop ichthyol 2021. [DOI: 10.1590/1982-0224-2020-0128] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Abstract The coastal basins of southeastern Brazil are influenced by climatic changes that caused sea-level oscillations during the Pleistocene. These marine transgressions and regressions can generate isolation and connection among coastal rivers. In this region, freshwater fishes are excellent models for phylogeographic studies because their distributions may have been affected by geographical and ecological changes resulting from these processes. Therefore, the main objective of this study was to evaluate the effects of Pleistocene sea-level changes on the genetic structure of the loricariid Hisonotus leucofrenatus throughout its area of occurrence. Two genes were sequenced: Cytochrome Oxidase subunit 1 (mitochondrial gene) and rpS7 ribosomal protein gene intron 1 (nuclear gene) from specimens representing 14 river drainages. The genetic data corroborate a divide for freshwater fish by the Serra do Tabuleiro mountain in Santa Catarina State. This divide determines two main genetic groups in H. leucofrenatus: one group to the south and one to the north of this mountain range. The genetic structure observed coincide with the limits of estimated paleodrainage systems for the region, supporting that marine transgressions and regressions during the Pleistocene influenced the biogeographical history of H. leucofrenatus.
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Affiliation(s)
| | - Tiago P. Carvalho
- Universidade Federal do Rio Grande do Sul, Brazil; Pontificia Universidad Javeriana, Colombia
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Delapieve MLS, Carvalho TP, Reis RE. Species delimitation in a range-restricted group of cascudinhos (Loricariidae: Epactionotus) supports morphological and genetic differentiation across coastal rivers of southern Brazil. J Fish Biol 2020; 97:1748-1769. [PMID: 32914431 DOI: 10.1111/jfb.14538] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2020] [Revised: 09/04/2020] [Accepted: 09/09/2020] [Indexed: 06/11/2023]
Abstract
Epactionotus species are known for inhabiting the rocky-bottom stretches of fast-flowing rivers in a limited geographic area along the Atlantic coast of southern Brazil. These species are endemic to single coastal river drainages (two neighbouring drainages for Epactionotus bilineatus) isolated from each other by the coastal lacustrine environments or the Atlantic Ocean. E. bilineatus is from the Maquiné and Três Forquilhas River basins, both tributaries of the Tramandaí River system, whereas E. itaimbezinho is endemic to the Mampituba River drainage and Epactionotus gracilis to the Araranguá River drainage. Recent fieldwork in the Atlantic coastal drainages of southern Brazil revealed new populations in the Urussanga, Tubarão, d'Una and Biguaçu River drainages. Iterative species delimitation using molecular data (cytochrome c oxidase subunit I) and morphology (morphometrics and meristics) was applied to evaluate species recognition of isolated populations. With regard to new data, the genus was re-diagnosed, the status of Epactionotus species/populations was re-evaluated, formerly described species were supported and population structure was recognized. As for the newly discovered populations, both morphological and molecular data strongly support the population from the Biguaçu River drainage, in Santa Catarina State, as a new species. Molecular data revealed strong per-basin population structure, which may be related to species habitat specificity and low or no dispersal among drainages.
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Affiliation(s)
- Maria Laura S Delapieve
- Laboratory of Vertebrate Systematics, Pontifícia Universidade Católica do Rio Grande do Sul, PUCRS, Porto Alegre, Brazil
| | - Tiago P Carvalho
- Laboratorio de Ictiología, Unidad de Ecología y Sistemática (UNESIS), Departamento de Biología, Facultad de Ciencias, Pontificia Universidad Javeriana, Bogotá, Colombia
| | - Roberto E Reis
- Laboratory of Vertebrate Systematics, Pontifícia Universidade Católica do Rio Grande do Sul, PUCRS, Porto Alegre, Brazil
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Carvalho TP, Reis RE. A New Miniature Species of Acanthobunocephalus (Silurifomes: Aspredinidae) from the Lower Purus River Basin, Amazon Basin, Brazil. COPEIA 2020. [DOI: 10.1643/ci-19-309] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Affiliation(s)
- Tiago P. Carvalho
- Laboratorio de Ictiología, Unidad de Ecología y Sistemática (UNESIS), Departamento de Biología, Facultad de Ciencias, Pontificia Universidad Javeriana, Carrera 7 No. 43-82, Bogotá D.C., Colombia; . Send reprint requests
| | - Roberto E. Reis
- Pontifícia Universidade Católica do Rio Grande do Sul, PUCRS, Av. Ipiranga, 6681, 90619-900 Porto Alegre, RS, Brazil;
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Donin LM, Ferrer J, Carvalho TP. Taxonomical study of Trichomycterus (Siluriformes: Trichomycteridae) from the Ribeira de Iguape River basin reveals a new species recorded in the early 20th century. J Fish Biol 2020; 96:886-904. [PMID: 32039475 DOI: 10.1111/jfb.14278] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2019] [Revised: 01/31/2020] [Accepted: 02/07/2020] [Indexed: 06/10/2023]
Abstract
A new species of Trichomycterus endemic to the Ribeira de Iguape River basin, southeastern Brazil, was studied based on morphological and molecular evidence. This species had an outer layer of coloration composed of scattered, round, black or dark-brown spots smaller or equivalent in size to the circumference of the eye; eight pectoral-fin rays; 28-29 opercular odontodes; 54-56 interopercular odontodes; and supraorbital line of the laterosensory system not interrupted, with pores s2 absent. Two other species of Trichomycterus from the Ribeira de Iguape River basin are recorded, and their taxonomic status is discussed: Trichomycterus alternatus and Trichomycterus jacupiranga were not differentiated using molecular analysis but may be consistently distinguished based on morphology. The phylogenetic relationships of the co-occurring species, T. alternatus and Cambeva zonata, were inferred using mitochondrial data, reinforcing the taxonomic status of these recently revised species that have a complex taxonomy. In addition, a new combination for Trichomycterus taroba with its inclusion in the genus Cambeva is recommended.
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Affiliation(s)
- Laura M Donin
- Departamento de Zoologia, Universidade Federal do Rio Grande do Sul, Programa de Pós-Graduação em Biologia Animal, Porto Alegre, Brazil
- Museu de Zoologia da Universidade de São Paulo, São Paulo, Brazil
| | - Juliano Ferrer
- Departamento de Zoologia, Universidade Federal do Rio Grande do Sul, Programa de Pós-Graduação em Biologia Animal, Porto Alegre, Brazil
| | - Tiago P Carvalho
- Departamento de Zoologia, Universidade Federal do Rio Grande do Sul, Programa de Pós-Graduação em Biologia Animal, Porto Alegre, Brazil
- Laboratorio de Ictiología, Unidad de Ecología y Sistemática (UNESIS), Departamento de Biología, Facultad de Ciencias, Pontificia Universidad Javeriana, Carrera, Bogotá DC, Colombia
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Craig JM, Carvalho TP, Chakrabarty P, Derouen V, Ortega H, Petry P, Reis RE, Tagliacollo VA, Albert JS. Using community phylogenetics to assess phylogenetic structure in the Fitzcarrald region of Western Amazonia. Neotrop ichthyol 2020. [DOI: 10.1590/1982-0224-2020-0004] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
ABSTRACT Here we explore the use of community phylogenetics as a tool to document patterns of biodiversity in the Fitzcarrald region, a remote area in Southwestern Amazonia. For these analyses, we subdivide the region into basin-wide assemblages encompassing the headwaters of four Amazonian tributaries (Urubamba, Yuruá, Purús and Las Piedras basins), and habitat types: river channels, terra firme (non-floodplain) streams, and floodplain lakes. We present a robust, well-documented collection of fishes from the region including 272 species collected from 132 field sites over 63 field days and four years, comprising the most extensive collection of fishes from this region to date. We conduct a preliminary community phylogenetic analysis based on this collection and recover results largely statistically indistinguishable from the random expectation, with only a few instances of phylogenetic structure. Based on these results, and of those published in other recent biogeographic studies, we conclude that the Fitzcarrald fish species pool accumulated over a period of several million years, plausibly as a result of dispersal from the larger species pool of Greater Amazonia.
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Affiliation(s)
| | | | | | | | | | | | - Roberto E. Reis
- Pontifícia Universidade Católica do Rio Grande do Sul, Brazil
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Leão MDV, Carvalho TP, Reis RE, Wosiacki WB. A new species of Pseudobunocephalus Friel, 2008 (Siluriformes: Aspredinidae) from the lower Tocantins and Mearim river drainages, North and Northeast of Brazil. Zootaxa 2019; 4586:zootaxa.4586.1.5. [PMID: 31716144 DOI: 10.11646/zootaxa.4586.1.5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2019] [Indexed: 11/04/2022]
Abstract
Pseudobunocephalus timbira, new species, is described from streams of the lower Tocantins and the Mearim river drainages, in North and Northeast of Brazil. Pseudobunocephalus timbira can be distinguished from all congeners by having the second hypobranchial and the third basibranchial cartilaginous (vs. ossified). Additionally, it can be dintinguished from P. lundbergi by the following putative apomorphic features within Pseudobunocephalus: posterolateral process of premaxilla present (vs. absent); bony knobs in dorsal lamina of Weberian apparatus absent (vs. present); distal end of posterior margin of 5th parapophysis not enlarged (vs. enlarged); number of ribs three (vs. four or five) and infraorbital sensory canal entering neurocranium via frontal (vs. via sphenotic). It is distinguished from P. bifidus and P. iheringii by having a gracile body not surpassing 34 mm SL (vs. robust body, reaching up to 59 mm SL, respectively); by having the posterior margin of cranial fontanel concave (vs. posterior margin somewhat straight with parieto-supraoccipital extending anteriorly); by having a conspicuous knobby ornamentation on dorsal surface of skull (vs. skull knobs slightly pronounced); by having Weberian ventral blade of hemal canal opened (vs. closed) and by the absence of serrations on the proximal portion of the anterior margin of pectoral-fin spine (vs. serrations covering entire anterior margin of the pectoral spine). Additionally, it can be distinguished from P. amazonicus, P. rugosus and P. quadriradiatus, by having the posterolateral mental barbel with at least one fleshy lobe located proximally along the posterior margin (vs. posterolateral mental barbel simple, not having fleshy lobes). It also differs from P. amazonicus and P. rugosus by having five branchiostegal rays (vs. four). It also can be distinguished from P. amazonicus by having the contact of hyomandibula cartilage with neurocranium limited to the sphenotic (vs. extending to both sphenotic and pterotic); by having the ventral blade of Weberian apparatus open (vs. closed) and by anterior exit of hemal canal in abdominal vertebra (vs. in complex vertebra); from P. rugosus by coloration of proximal portion of caudal fin similar to rest of caudal fin (vs. clear patch) and from P. quadriradiatus by the total number of pectoral fin-rays six (vs. five). Variable characteristics within Pseudobunocephalus species are summarized and comments on the phylogenetic relationships and the disjunct distribution of the new species are made. [Species zoobank url: urn:lsid:zoobank.org:act:392F95E0-86E1-4386-8779-C4F71098DBCC].
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Affiliation(s)
- Manuela Dopazo V Leão
- Museu Paraense Emílio Goeldi, Coordenação de Zoologia, Departamento de Ictiologia, Av. Magalhães Barata 376, 66040-170, Belém, PA, Brazil..
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Giora J, Carvalho TP. Anatomy and homology of the accessory electric organs of the toothless knifefishes (Rhamphichthyoidea: Gymnotiformes). J Fish Biol 2018; 93:1059-1068. [PMID: 30246387 DOI: 10.1111/jfb.13808] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2018] [Accepted: 09/11/2018] [Indexed: 06/08/2023]
Abstract
We describe the anatomy and histology of the accessory electric organs of several knifefish taxa. Accessory electric organs are observed among Rhamphichthyoidea in the opercular, mental and humeral regions. Within this group, some species of Brachyhypopomus possess an accessory electric organ in the opercular region. Rhamphichthyinae and Steatogenys possess accessory electric organs in the mental region of the body that differs in many aspects, such as general electrocyte shape and its number of caudal ridges. Steatogenys, Hypopygus and Rhamphichthys possess an accessory electric organ in the humeral region that differs in position, electrocyte configuration and shape. Electrocytes of both humeral and mental accessory electric organs in Steatogenys share a number of common features (e.g., electrocyte shape and innervation pattern), which distinguishes them from the electric organs of related groups. Rhamphichthys has an accessory electric organ in the humeral (specifically subpectoral) region, which has not previously been reported in the literature and differs in arrangement and electrocyte shape from those previously described electric organs of other taxa. Homology of these accessory electric organs is discussed in the context of hypothesized relationships among rhamphichthyoid taxa, indicating that accessory electric organs originated multiple times with apparently no subsequent losses.
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Affiliation(s)
- Júlia Giora
- Laboratório de Ictiologia, Departamento de Zoologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
| | - Tiago P Carvalho
- Laboratório de Ictiologia, Departamento de Zoologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
- Department of Ichthyology, The Academy of Natural Sciences of Philadelphia, Drexel University, Philadelphia, Pennsylvania
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Carvalho TP, Arce H M, Reis RE, Sabaj MH. Molecular phylogeny of Banjo catfishes (Ostaryophisi: Siluriformes: Aspredinidae): A continental radiation in South American freshwaters. Mol Phylogenet Evol 2018; 127:459-467. [PMID: 29723648 DOI: 10.1016/j.ympev.2018.04.039] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2017] [Revised: 04/27/2018] [Accepted: 04/27/2018] [Indexed: 10/17/2022]
Abstract
The family Aspredinidae is a moderately diverse and broadly distributed group of freshwater fishes endemic to South America. Commonly known as Banjo Catfishes, Aspredinidae currently includes 44 valid species divided among 13 genera. The first species-comprehensive hypothesis on phylogenetic relationships among aspredinids is presented. The phylogeny is based on DNA sequence data for five gene fragments (mitochondrial 16S and COI; nuclear RAG1, MYH6 and SH3PX3) from 114 individuals representing 31 species in 12 aspredinid genera. Analyses of molecular data support the monophyly of most genera (Bunocephalus excepted) and several higher-level relationships previously proposed by morphological studies. Based on the molecular phylogeny, a new suprageneric classification for Aspredinidae is proposed with the new monotypic subfamily Pseudobunocephalinae as the sister taxon to all other aspredinids.
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Affiliation(s)
- Tiago P Carvalho
- Laboratório de Ictiologia, Departamento de Zoologia, Universidade Federal do Rio Grande do Sul. Av. Bento Gonçalves, 9500, 91501-970 Porto Alegre, RS, Brazil; Department of Ichthyology, The Academy of Natural Sciences of Philadelphia, Drexel University, 1900 Benjamin Franklin Parkway, 19103-1195 Philadelphia, PA, USA.
| | - Mariangeles Arce H
- Department of Ichthyology, The Academy of Natural Sciences of Philadelphia, Drexel University, 1900 Benjamin Franklin Parkway, 19103-1195 Philadelphia, PA, USA.
| | - Roberto E Reis
- PUCRS, Laboratório de Sistemática de Vertebrados, Av. Ipiranga, 6681, 90619-900 Porto Alegre, RS, Brazil.
| | - Mark H Sabaj
- Department of Ichthyology, The Academy of Natural Sciences of Philadelphia, Drexel University, 1900 Benjamin Franklin Parkway, 19103-1195 Philadelphia, PA, USA.
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Chuctaya JA, Donin LM, Vieira CS, Faustino-Fuster D, Carvalho TP. First record of Phallotorynus victoriae Oliveros, 1983 (Cyprinodontiformes, Poeciliidae) for Uruguay river basin and Rio Grande do Sul, southern Brazil. CheckList 2018. [DOI: 10.15560/14.1.159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022] Open
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Carvalho TP, Reis RE, Sabaj MH. Description of a New Blind and Rare Species ofXyliphius(Siluriformes: Aspredinidae) from the Amazon Basin Using High-Resolution Computed Tomography. COPEIA 2017. [DOI: 10.1643/ci-16-456] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Carvalho CES, Sobrinho-Junior EPC, Brito LM, Nicolau LAD, Carvalho TP, Moura AKS, Rodrigues KAF, Carneiro SMP, Arcanjo DDR, Citó AMGL, Carvalho FAA. Anti-Leishmania activity of essential oil of Myracrodruon urundeuva (Engl.) Fr. All.: Composition, cytotoxity and possible mechanisms of action. Exp Parasitol 2017; 175:59-67. [PMID: 28189487 DOI: 10.1016/j.exppara.2017.02.012] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2016] [Revised: 01/23/2017] [Accepted: 02/07/2017] [Indexed: 11/28/2022]
Abstract
Myracrodruon urundeuva (Engl.) Fr. All., commonly known as "aroeira-do-sertão", is a medicinal plant from Anacardiaceae family. In this study, the chemical composition of M. urundeuva essential oil (MuEO) was evaluated by gas chromatography-mass spectrometry (GC-MS), as well as its anti-Leishmania potential, cytotoxicity, and macrophage activation capability as possible antiprotozoal mechanism of action were assessed. Fourteen compounds were identified, which constituted 94.87% of total oil composition. The most abundant components were monoterpenes (80.35%), with β-myrcene (42.46%), α-myrcene (37.23%), and caryophyllene (4.28%) as the major constituents. The MuEO inhibited the growth of promastigotes (IC50 205 ± 13.4 μg mL-1), axenic amastigotes (IC50 104.5 ± 11.82 μg mL-1) and decreased percentage of macrophage infection and number of amastigotes per macrophage (IC50 of 44.5 ± 4.37 μg⋅mL-1), suggesting significant anti-Leishmania activity. The cytotoxicity of MuEO was assessed by MTT test in Balb/c murine macrophages and by human erythrocytes lysis assay and low cytotoxicity for these cells was observed. The CC50 value against macrophages were 550 ± 29.21 μg mL-1, while cytotoxicity for erythrocytes was around 20% at the highest concentration assessed, with HC50 > 800 μg mL-1. While MuEO-induced anti-Leishmania activity is not mediated by increases in both lysosomal activity and nitric oxide production in macrophages, the results suggest the antiamastigote activity is associated with an immunomodulatory activity of macrophages due to an increase of phagocytic capability induced by MuEO. Thus, MuEO presented significant activity against Leishmania amazonensis, probably modulating the activation of macrophages, with low cytotoxicity to murine macrophages and human erythrocytes.
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Affiliation(s)
- C E S Carvalho
- Medicinal Plants Research Center, Federal University of Piauí, 64049-550, Teresina, PI, Brazil.
| | - E P C Sobrinho-Junior
- Medicinal Plants Research Center, Federal University of Piauí, 64049-550, Teresina, PI, Brazil
| | - L M Brito
- Medicinal Plants Research Center, Federal University of Piauí, 64049-550, Teresina, PI, Brazil
| | - L A D Nicolau
- Medicinal Plants Research Center, Federal University of Piauí, 64049-550, Teresina, PI, Brazil
| | - T P Carvalho
- Medicinal Plants Research Center, Federal University of Piauí, 64049-550, Teresina, PI, Brazil
| | - A K S Moura
- Department of Chemistry, Federal University of Piauí, 64049-550, Teresina, PI, Brazil
| | - K A F Rodrigues
- Medicinal Plants Research Center, Federal University of Piauí, 64049-550, Teresina, PI, Brazil
| | - S M P Carneiro
- Medicinal Plants Research Center, Federal University of Piauí, 64049-550, Teresina, PI, Brazil
| | - D D R Arcanjo
- Medicinal Plants Research Center, Federal University of Piauí, 64049-550, Teresina, PI, Brazil
| | - A M G L Citó
- Department of Chemistry, Federal University of Piauí, 64049-550, Teresina, PI, Brazil
| | - F A A Carvalho
- Medicinal Plants Research Center, Federal University of Piauí, 64049-550, Teresina, PI, Brazil
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Carvalho TP, Reis RE, Friel JP. A new species of Hoplomyzon (Siluriformes: Aspredinidae) from Maracaibo Basin, Venezuela: osteological description using high-resolution computed microtomography of a miniature species. Neotrop ichthyol 2017. [DOI: 10.1590/1982-0224-20160143] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
ABSTRACT A new miniature species of banjo catfish of the genus Hoplomyzon is described from the Lake Maracaibo Basin in Venezuela. The new species is distinguished from all its congeners by the straight anterior margin of the mesethmoid (vs. a medial notch); a smooth and straight ventral surface of the premaxilla (vs. presence of bony knobs on the ventral surface of premaxilla); absence of teeth on dentary (vs. teeth present on dentary); configuration of ventral vertebral processes anterior to anal fin, which are composed of single processes anterior to anal-fin pterygiophore (vs. paired process); presence of several filamentous barbel-like structures on the ventral surface of head of adults (vs. small papillous structures in the ventral surface of head of adults); and 8 anal-fin rays (vs. 6 or 7). An extensive osteological description is made of the holotype using high-resolution x-ray computed microtomography (HRXCT).
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Affiliation(s)
- Tiago P. Carvalho
- Universidade Federal do Rio Grande do Sul, Brazil; Drexel University, USA
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Carvalho TP, Lundberg JG, Baskin JN, Friel JP, Reis RE. A new species of the blind and miniature genusMicromyzonFriel and Lundberg, 1996 (Silurifomes: Aspredinidae) from the Orinoco River: describing catfish diversity using high-resolution computed tomography. Proceedings of the Academy of Natural Sciences of Philadelphia 2016. [DOI: 10.1635/053.165.0104] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Carvalho TP, Cardoso AR, Friel JP, Reis RE. Two new species of the banjo catfish Bunocephalus Kner (Siluriformes: Aspredinidae) from the upper and middle rio São Francisco basins, Brazil. Neotrop ichthyol 2015. [DOI: 10.1590/1982-0224-20140152] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Two new species of banjo catfish of the genus Bunocephalus are described from the upper and middle rio São Francisco basins of Brazil. Bunocephalus hartti is distinguished from all its congeners by the absence of serrations along the anterior margin of pectoral-fin spine in adults (vs. presence of serrations along the anterior margin of the spine). Bunocephalus minerim can be diagnosed from all congeners,except B. larai, by the absence of an epiphyseal bar between the paired frontals (vs. presence of the epiphyseal bar at least in adults). Bunocephalus minerim is distinguished from B. larai and other congeners, except B. chamaizelus , by having nine principal caudal-fin rays (vs. 10 principal caudal-fin rays).
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Affiliation(s)
| | | | | | - Roberto E. Reis
- Pontifícia Universidade Católica do Rio Grande do Sul, Brazil
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Carvalho TP, Flores JA, Espino J, Trevejo G, Ortega H, Jerep FC, Reis RE, Albert JS. Fishes from the Las Piedras River, Madre de Dios basin, Peruvian Amazon. cl 2012. [DOI: 10.15560/8.5.973] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022] Open
Abstract
We report results of an ichthyological survey on the Las Piedras basin, a tributary of the Madre de Dios River located in the southwestern portion of the Amazon Basin in southeastern Peru. Collections were made at low water (June, 2011) from 180 - 270 m elevation, within the Fitzcarrald Arch. This is the last of four expeditions to the region with the goal of comparing the ichthyofaunas across the headwaters of the largest tributary basins in the western Amazon: Juruá, Ucayali, Purús and Madre de Dios rivers. Twenty-one sites along the Las Piedras River and its tributaries were sampled and a total of 144 species belonging to 32 families and seven orders were captured and identified. The most diverse families were Characidae (34 spp.), Loricariidae (23 spp.), and Pimelodidae (19 spp.).
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Carvalho TP, Ramos CS, Albert JS. A New Species of Gymnorhamphichthys (Gymnotiformes: Rhamphichthyidae) from the Paraná–Paraguay Basin. COPEIA 2011. [DOI: 10.1643/ci-10-154] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Carvalho TP, Espino J, Máxime E, Quispe R, Rengifo B, Ortega H, Albert JS. Fishes from the Lower Urubamba river near Sepahua, Amazon Basin, Peru. cl 2011. [DOI: 10.15560/7.4.413] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022] Open
Abstract
We report results of an ichthyological survey of the Lower Urubamba river, a tributary of the Ucayali river located in the southwestern portion of the Amazon Basin in southeastern Peru. Collections were made at low water (July, 2009) from 280 - 310 m elevation, near the town of Sepahua within the Fitzcarrald Arch, an upland associated with Pliocene (c. 4 Ma) uplift of the Peruvian Andes. This is the second of four planned expeditions to the region with the goal of comparing ichthyofaunas across the headwaters of the largest tributary basins in the western Amazon (Juruá, Ucayali, Purús and Madre de Dios). Twenty-one sites were sampled using seine nets, hook lines, cast nets and dip nets. A total of 98 species in 22 families and eight orders were captured and identified. The most diverse families are Characidae (40 spp.) and Loricariidae (20 spp.), and 12 families are represented by a single species. These data suggest that the fish fauna of the Lower Urubamba river near Sepahua is distinct from, and less diverse than, adjacent areas of lowland Amazonia.
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Carvalho TP, Buonomano DV. A novel learning rule for long-term plasticity of short-term synaptic plasticity enhances temporal processing. Front Integr Neurosci 2011; 5:20. [PMID: 21660100 PMCID: PMC3105243 DOI: 10.3389/fnint.2011.00020] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2011] [Accepted: 05/04/2011] [Indexed: 11/13/2022] Open
Abstract
It is well established that short-term synaptic plasticity (STP) of neocortical synapses is itself plastic - e.g., the induction of LTP and LTD tend to shift STP towards short-term depression and facilitation, respectively. What has not been addressed theoretically or experimentally is whether STP is "learned"; that is, is STP regulated by specific learning rules that are in place to optimize the computations performed at synapses, or, are changes in STP essentially an epiphenomenon of long-term plasticity? Here we propose that STP is governed by specific learning rules that operate independently and in parallel of the associative learning rules governing baseline synaptic strength. We describe a learning rule for STP and, using simulations, demonstrate that it significantly enhances the discrimination of spatiotemporal stimuli. Additionally we generate a set of experimental predictions aimed at testing our hypothesis.
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Carvalho TP, Albert JS. Redescription and phylogenetic position of the enigmatic Neotropical electric fish Iracema caiana Triques (Gymnotiformes: Rhamphichthyidae) using x-ray computed tomography. Neotrop ichthyol 2011. [DOI: 10.1590/s1679-62252011000300001] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We redescribe Iracema caiana, a monotypic genus of the gymnotiform electric fish family Rhamphichthyidae. Iracema is known only from the type series (holotype and three paratypes) collected from the rio Jauaperi, affluent to the rio Negro in the Amazon basin, and was never collected again. Previous morphological studies were limited to features of external morphology. To study the osteology of Iracema we examined two specimens of different sizes using high-resolution x-ray computed tomography, a non-invasive and non-destructive technique to visualize internal anatomical structures. We describe and illustrate the osteology of Iracema caiana, and present data on morphometrics and external morphology. Contrary to previous hypotheses we propose that Iracema is the sister group to Rhamphichthys based on four synapomorphies: intermuscular bones present in the adductor mandibulae, reticulated texture of opercles, fully ossified Baudelot's ligaments, and elongate scales above the lateral line in the posterior portion of the body.
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Abstract
We report results of an ichthyological survey of the upper Rio Yuruá in southeastern Peru. Collections were made at low water (July-August, 2008) near the headwaters of the Brazilian Rio Juruá. This is the first of four expeditions to the Fitzcarrald Arch — an upland associated with the Miocene-Pliocene rise of the Peruvian Andes — with the goal of comparing the ichthyofauna across the headwaters of the largest tributary basins in the western Amazon (Ucayali, Juruá, Purús and Madeira). We recorded a total of 117 species in 28 families and 10 orders, with all species accompanied by tissue samples preserved in 100% ethanol for subsequent DNA analysis, and high-resolution digital images of voucher specimens with live color to facilitate accurate identification. From interviews with local fishers and comparisons with other ichthyological surveys of the region we estimate the actual diversity of fishes in the upper Juruá to exceed 200 species.
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Carvalho TP, Buonomano DV. Differential effects of excitatory and inhibitory plasticity on synaptically driven neuronal input-output functions. Neuron 2009; 61:774-85. [PMID: 19285473 DOI: 10.1016/j.neuron.2009.01.013] [Citation(s) in RCA: 81] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2008] [Revised: 09/22/2008] [Accepted: 01/13/2009] [Indexed: 11/25/2022]
Abstract
Ultimately, whether or not a neuron produces a spike determines its contribution to local computations. In response to brief stimuli the probability a neuron will fire can be described by its input-output function, which depends on the net balance and timing of excitatory and inhibitory currents. While excitatory and inhibitory synapses are plastic, most studies examine plasticity of subthreshold events. Thus, the effects of concerted regulation of excitatory and inhibitory synaptic strength on neuronal input-output functions are not well understood. Here, theoretical analyses reveal that excitatory synaptic strength controls the threshold of the neuronal input-output function, while inhibitory plasticity alters the threshold and gain. Experimentally, changes in the balance of excitation and inhibition in CA1 pyramidal neurons also altered their input-output function as predicted by the model. These results support the existence of two functional modes of plasticity that can be used to optimize information processing: threshold and gain plasticity.
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Bührnheim CM, Carvalho TP, Malabarba LR, Weitzman SH. A new genus and species of characid fish from the Amazon basin: the recognition of a relictual lineage of characid fishes (Ostariophysi: Cheirodontinae: Cheirodontini). Neotrop ichthyol 2008. [DOI: 10.1590/s1679-62252008000400016] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Amazonspinther dalmata, a new miniature characid from the streams of rio Purus and rio Madeira, right bank tributaries of the rio Amazonas, is described as a new genus and species of the subfamily Cheirodontinae. The unique characters of the new genus and species are the three remarkable black blotches on the base of the dorsal, anal, and caudal fins, the anteriormost proximal radial of the anal fin with an anteriorly extended lamina entering the abdominal cavity, and the extremely elongate caudal peduncle. The reduced number of ventral procurrent caudal-fin rays (7-9), and the hemal spines of only posterior one, two, or sometimes three caudal vertebrae directly articulating with the ventral procurrent caudal-fin rays further diagnoses the new taxon from remaining genera of the tribe Cheirodontini. The results of a phylogenetic analysis strongly support a close relationship between A. dalmata and Spintherobolus in the tribe Cheirodontini on the basis of fifteen unambiguous synapomorphies. Ten of these characters, previously hypothesized as exclusive synapomorphies for Spintherobolus, were now also identified in Amazonspinther, such as the pattern of exposed neuromasts on the head, the presence of a second pseudotympanum anterior to the first pleural rib, and the nearly discoidal coracoid bone. A discussion about the phylogenetic position of the closely related fossil †Megacheirodon to Spintherobolus and Amazonspinther is also provided. Convergent characters shared between Amazonspinther and the characid Priocharax are discussed in relation to miniaturization. Biogeographical implications of the diversification of Amazonspinther, Spintherobolus, and Megacheirodon lineages are discussed.
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Abstract
Gene expression from both parental alleles is beneficial by masking the effects of deleterious recessive mutations and by reducing the noise in gene expression in diploid organisms. However, a class of genes are expressed preferentially or strictly from a single allele. The selective advantage of avoiding biallelic expression is clear for allelic-excluded antigen receptor and odorant receptor genes, genes undergoing X-chromosome inactivation in females and parental genomic imprinted genes. In contrast, there is no clear biological rationale for the predominant and stochastic monoallelic expression of cytokine genes in the immune system, and the underlying mechanism is elusive and controversial. A clarification of the mechanism of predominant monoallelic expression would be instrumental in better understanding its eventual biological functional. This prompted the development of a quantitative framework that could describe the dynamics of the pattern of allele expression of the IL-10 gene, from which general quantitative insights could be gained. We report that the experimental observations on these patterns of allelic expression cannot be easily reconciled with a simple model of stochastic transcriptional activation, in which the two alleles are, at any time, equally competent for transcription. Instead, these observations call into action a general model of eukaryotic transcriptional regulation according to which the locus competence for transcription is dynamic, involving multiple, cooperative and stochastic modification steps. In this model, the probability that an allele becomes transcriptionally active is a function of the number of chromatin modifications that it accumulated. On the basis of the properties of this model, we argue that predominant monoallelic expression might have had no adaptive role, and may have evolved under indirect selection for low frequency of expressing cells.
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Affiliation(s)
- Tiago Paixão
- Instituto Gulbenkian de Ciência, 2781-901 Oeiras, Portugal.
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Bertaco VA, Carvalho TP. A new characid fish, Hyphessobryconhexastichos (Characiformes: Characidae) from Chapada dos Parecis, Mato Grosso, Brazil. Neotrop ichthyol 2005. [DOI: 10.1590/s1679-62252005000300013] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
A new characid species, Hyphessobrycon hexastichos, is described from the upper rio Tapajós, Mato Grosso, Brazil. The new species is distinguished from all other Hyphessobrycon species by the presence of black zigzag longitudinal lines between longitudinal rows of scales in the lateral of body, maxilla with 3-5 teeth, i,6 pelvic-fin rays, 18-22 branched anal-fin rays, 4 scale rows above and 3 scale rows below of lateral line, lateral line with 9-13 perforated scales, and 33-35 scales in a longitudinal series.
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