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Bhattarai K, Rajaganapathy S, Das T, Kim Y, Chen Y, Dai Q, Li X, Jiang X, Zong N. Using artificial intelligence to learn optimal regimen plan for Alzheimer's disease. J Am Med Inform Assoc 2023; 30:1645-1656. [PMID: 37463858 PMCID: PMC10531148 DOI: 10.1093/jamia/ocad135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2023] [Revised: 06/21/2023] [Accepted: 07/12/2023] [Indexed: 07/20/2023] Open
Abstract
BACKGROUND Alzheimer's disease (AD) is a progressive neurological disorder with no specific curative medications. Sophisticated clinical skills are crucial to optimize treatment regimens given the multiple coexisting comorbidities in the patient population. OBJECTIVE Here, we propose a study to leverage reinforcement learning (RL) to learn the clinicians' decisions for AD patients based on the longitude data from electronic health records. METHODS In this study, we selected 1736 patients from the Alzheimer's Disease Neuroimaging Initiative (ADNI) database. We focused on the two most frequent concomitant diseases-depression, and hypertension, thus creating 5 data cohorts (ie, Whole Data, AD, AD-Hypertension, AD-Depression, and AD-Depression-Hypertension). We modeled the treatment learning into an RL problem by defining states, actions, and rewards. We built a regression model and decision tree to generate multiple states, used six combinations of medications (ie, cholinesterase inhibitors, memantine, memantine-cholinesterase inhibitors, hypertension drugs, supplements, or no drugs) as actions, and Mini-Mental State Exam (MMSE) scores as rewards. RESULTS Given the proper dataset, the RL model can generate an optimal policy (regimen plan) that outperforms the clinician's treatment regimen. Optimal policies (ie, policy iteration and Q-learning) had lower rewards than the clinician's policy (mean -3.03 and -2.93 vs. -2.93, respectively) for smaller datasets but had higher rewards for larger datasets (mean -4.68 and -2.82 vs. -4.57, respectively). CONCLUSIONS Our results highlight the potential of using RL to generate the optimal treatment based on the patients' longitude records. Our work can lead the path towards developing RL-based decision support systems that could help manage AD with comorbidities.
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Affiliation(s)
| | | | - Trisha Das
- University of Illinois Urbana-Champaign, Champaign, Illinois, USA
| | - Yejin Kim
- University of Texas Health Science Center, Houston, Texas, USA
| | | | | | | | | | | | - Xiaoqian Jiang
- University of Texas Health Science Center, Houston, Texas, USA
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Das T, Bhattarai K, Rajaganapathy S, Wang L, Cerhan JR, Zong N. Leveraging multi-source to resolve inconsistency across pharmacogenomic datasets in drug sensitivity prediction. medRxiv 2023:2023.05.25.23290546. [PMID: 37333219 PMCID: PMC10274988 DOI: 10.1101/2023.05.25.23290546] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/20/2023]
Abstract
Pharmacogenomics datasets have been generated for various purposes, such as investigating different biomarkers. However, when studying the same cell line with the same drugs, differences in drug responses exist between studies. These variations arise from factors such as inter-tumoral heterogeneity, experimental standardization, and the complexity of cell subtypes. Consequently, drug response prediction suffers from limited generalizability. To address these challenges, we propose a computational model based on Federated Learning (FL) for drug response prediction. By leveraging three pharmacogenomics datasets (CCLE, GDSC2, and gCSI), we evaluate the performance of our model across diverse cell line-based databases. Our results demonstrate superior predictive performance compared to baseline methods and traditional FL approaches through various experimental tests. This study underscores the potential of employing FL to leverage multiple data sources, enabling the development of generalized models that account for inconsistencies among pharmacogenomics datasets. By addressing the limitations of low generalizability, our approach contributes to advancing drug response prediction in precision oncology.
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Affiliation(s)
- Trisha Das
- University of Illinois Urbana-Champaign, Champaign, Illinois, United States
| | | | - Sivaraman Rajaganapathy
- Department of Artificial Intelligence and Informatics Research, Mayo Clinic, Rochester, MN, USA
| | - Liewei Wang
- Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic, Rochester, MN
| | - James R. Cerhan
- Department of Quantitative Health Sciences, Mayo Clinic, Rochester, MN, USA
| | - Nansu Zong
- Department of Artificial Intelligence and Informatics Research, Mayo Clinic, Rochester, MN, USA
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Bhattarai K, Das T, Kim Y, Chen Y, Dai Q, Li X, Jiang X, Zong N. Using Artificial Intelligence to Learn Optimal Regimen Plan for Alzheimer's Disease. medRxiv 2023:2023.01.26.23285064. [PMID: 36747733 PMCID: PMC9901063 DOI: 10.1101/2023.01.26.23285064] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
Background Alzheimer's Disease (AD) is a progressive neurological disorder with no specific curative medications. While only a few medications are approved by FDA (i.e., donepezil, galantamine, rivastigmine, and memantine) to relieve symptoms (e.g., cognitive decline), sophisticated clinical skills are crucial to optimize the appropriate regimens given the multiple coexisting comorbidities in this patient population. Objective Here, we propose a study to leverage reinforcement learning (RL) to learn the clinicians' decisions for AD patients based on the longitude records from Electronic Health Records (EHR). Methods In this study, we withdraw 1,736 patients fulfilling our criteria, from the Alzheimer's Disease Neuroimaging Initiative(ADNI) database. We focused on the two most frequent concomitant diseases, depression, and hypertension, thus resulting in five main cohorts, 1) whole data, 2) AD-only, 3) AD-hypertension, 4) AD-depression, and 5) AD-hypertension-depression. We modeled the treatment learning into an RL problem by defining the three factors (i.e., states, action, and reward) in RL in multiple strategies, where a regression model and a decision tree are developed to generate states, six main medications extracted (i.e., no drugs, cholinesterase inhibitors, memantine, hypertension drugs, a combination of cholinesterase inhibitors and memantine, and supplements or other drugs) are for action, and Mini-Mental State Exam (MMSE) scores are for reward. Results Given the proper dataset, the RL model can generate an optimal policy (regimen plan) that outperforms the clinician's treatment regimen. With the smallest data samples, the optimal-policy (i.e., policy iteration and Q-learning) gained a lesser reward than the clinician's policy (mean -2.68 and -2.76 vs . -2.66, respectively), but it gained more reward once the data size increased (mean -3.56 and -2.48 vs . -3.57, respectively). Conclusions Our results highlight the potential of using RL to generate the optimal treatment based on the patients' longitude records. Our work can lead the path toward the development of RL-based decision support systems which could facilitate the daily practice to manage Alzheimer's disease with comorbidities.
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Affiliation(s)
- Kritib Bhattarai
- Department of Computer Science, Luther College Decorah, IA, United States
| | - Trisha Das
- Department of Computer Science, University of Illinois Urbana-Champaign Champaign, Champaign, IL, United States
| | - Yejin Kim
- School of Biomedical Informatics, University of Texas Health Science Center, Houston, TX, United States
| | | | - Qiying Dai
- Mayo Clinic Rochester, MN, United States
| | | | - Xiaoqian Jiang
- School of Biomedical Informatics, University of Texas Health Science Center, Houston, TX, United States
| | - Nansu Zong
- School of Biomedical Informatics, University of Texas Health Science Center, Houston, TX, United States
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Tahir B, Reilly J, Tay J, Clinch H, Boindala N, Hughes J, Riley S, Roxby P, Tozer-Loft S, Aung T, Qureshi M, Das T, Hatton M. 146P Impact of heart, lung and oesophageal doses on overall survival (OS) of small cell lung cancer (SCLC) patients following radical chemo-radiotherapy (RT). Ann Oncol 2022. [DOI: 10.1016/j.annonc.2022.02.177] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022] Open
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Mokhtar N, Lee C, Hatton M, Mok W, Das T, Fisher P, Bates E, Mathew T. P05.04 Retrospective Study on the Correlation of Central Tumour and Central Structures and the Effect on Survival for Patients Receiving Lung SABR. J Thorac Oncol 2021. [DOI: 10.1016/j.jtho.2021.08.276] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Elzi DJ, Bauta W, Lai SC, Das T, Mogare S, Rebel VI. Abstract 1223: Simultaneous knockdown of CD320 and LRP2 receptors is selectively toxic to cancer cells but not normal cells. Cancer Res 2021. [DOI: 10.1158/1538-7445.am2021-1223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Abstract
Designing effective therapies with selective toxicity in cancer cells is a priority of cancer research. Porphyrins are known to selectively accumulate in cancerous tissue, a feature that has been exploited in cancer diagnostics and therapeutics. The porphyrin TCPP is used in the CyPath® Lung test for diagnosis of lung cancer. During efforts to elucidate the mechanism by which TCPP selectively accumulates in cancer cells, we discovered that simultaneous knockdown of two LDLR-family receptors, CD320 and LRP2, was selectively cytotoxic to cancer cells and not to normal cells. CD320 is a receptor that internalizes the complex of cobalamin (Vitamin B12)/transcobalamin II. LRP2 is a receptor strongly expressed in the kidney which also internalizes the cobalamin/transcobalamin II complex, in addition to more than 50 other ligands. Cobalamin is the catalytic cofactor for the enzymes methionine synthase and methylmalonyl CoA mutase, which play direct and indirect roles in folate metabolism, nucleotide biosynthesis, DNA methylation, and metabolism of fatty acids and amino acids, which suggests that cobalamin deprivation might be particularly deleterious to metabolically active cancer cells. We designed siRNAs to effectively silence CD320 and LRP2 protein expression and transfected these siRNAs into normal and cancer cell lines using commercial transfection reagents. Effective gene knockdown (up to 90%) was confirmed by western blotting. Simultaneous siRNA knockdown of CD320 and LRP2 in normal fibroblasts did not affect their cell proliferation, as measured by the Cell Titer-GLO assay. However, knockdown of CD320 and LRP2 in cancer cell lines derived from diverse tissues (lung, breast, prostate, brain, and skin cancers) inhibited cell proliferation or killed the cells by up to 80%. Interestingly, in some cell lines, when either CD320 or LRP2 were silenced individually, a concurrent increase in protein expression of the other receptor was observed, suggesting that CD320 and LRP2 compensate for each other's function; hence, silencing both receptors is required for optimal cell killing. Ongoing studies will test the hypothesis that cobalamin deficiency is a mechanism for the selective cytotoxicity observed in cancer cells. Further studies include in vivo animal studies to study the effects on CD320 and LRP2 knockdown on human tumor xenograft models. In summary, we have found that inhibiting CD320 and LRP2 expression strongly and selectively inhibits cancer cell growth, leading to a promising therapeutic strategy for diverse cancers.
Citation Format: David J. Elzi, William Bauta, Shao-Chiang Lai, Trisha Das, Shweta Mogare, Vivienne I. Rebel. Simultaneous knockdown of CD320 and LRP2 receptors is selectively toxic to cancer cells but not normal cells [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2021; 2021 Apr 10-15 and May 17-21. Philadelphia (PA): AACR; Cancer Res 2021;81(13_Suppl):Abstract nr 1223.
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Affiliation(s)
| | | | | | - Trisha Das
- bioAffinity Technologies, San Antonio, TX
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Affiliation(s)
- Tanushree Ghosh
- Discipline of Polymer Science and Chemical Technology, Department of Applied Chemistry Delhi Technological University Delhi India
| | - Trisha Das
- Discipline of Polymer Science and Chemical Technology, Department of Applied Chemistry Delhi Technological University Delhi India
| | - Roli Purwar
- Discipline of Polymer Science and Chemical Technology, Department of Applied Chemistry Delhi Technological University Delhi India
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DUTTA P, Das T. POS-516 ASSESSMENT OF QUALITY OF LIFE IN HEMODIALYSIS PATIENTS USING WHOQOL-BREF QUESTIONNAIRE. Kidney Int Rep 2021. [DOI: 10.1016/j.ekir.2021.03.544] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022] Open
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Elzi DJ, Bauta WE, Sanchez JR, Das T, Mogare S, Zannes Fatland P, Iza M, Pertsemlidis A, Rebel VI. Identification of a novel mechanism for meso-tetra (4-carboxyphenyl) porphyrin (TCPP) uptake in cancer cells. FASEB J 2021; 35:e21427. [PMID: 33629776 DOI: 10.1096/fj.202000197r] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2020] [Revised: 01/13/2021] [Accepted: 01/22/2021] [Indexed: 01/23/2023]
Abstract
Porphyrins are used for cancer diagnostic and therapeutic applications, but the mechanism of how porphyrins accumulate in cancer cells remains elusive. Knowledge of how porphyrins enter cancer cells can aid the development of more accurate cancer diagnostics and therapeutics. To gain insight into porphyrin uptake mechanisms in cancer cells, we developed a flow cytometry assay to quantify cellular uptake of meso-tetra (4-carboxyphenyl) porphyrin (TCPP), a porphyrin that is currently being developed for cancer diagnostics. We found that TCPP enters cancer cells through clathrin-mediated endocytosis. The LDL receptor, previously implicated in the cellular uptake of other porphyrins, only contributes modestly to uptake. We report that TCPP instead binds strongly ( K D = 42 nM ) to CD320, the cellular receptor for cobalamin/transcobalamin II (Cbl/TCN2). Additionally, TCPP competes with Cbl/TCN2 for CD320 binding, suggesting that CD320 is a novel receptor for TCPP. Knockdown of CD320 inhibits TCPP uptake by up to 40% in multiple cancer cell lines, including lung, breast, and prostate cell lines, which supports our hypothesis that CD320 both binds to and transports TCPP into cancer cells. Our findings provide some novel insights into why porphyrins concentrate in cancer cells. Additionally, our study describes a novel function for the CD320 receptor which has been reported to transport only Cbl/TCN2 complexes.
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Affiliation(s)
- David J Elzi
- BioAffinity Technologies, Inc., San Antonio, TX, USA
| | | | | | - Trisha Das
- BioAffinity Technologies, Inc., San Antonio, TX, USA
| | - Shweta Mogare
- BioAffinity Technologies, Inc., San Antonio, TX, USA
| | | | - Moises Iza
- BioAffinity Technologies, Inc., San Antonio, TX, USA
| | - Alexander Pertsemlidis
- Department of Pediatrics, The University of Texas Health Science Center, San Antonio, TX, USA.,Department of Cell Systems & Anatomy, The University of Texas Health Science Center at San Antonio, San Antonio, TX, USA.,Greehey Children's Cancer Research Institute, The University of Texas Health Science Center at San Antonio, San Antonio, TX, USA.,Mays Cancer Center, UT Health San Antonio MD Anderson, San Antonio, TX, USA
| | - Vivienne I Rebel
- BioAffinity Technologies, Inc., San Antonio, TX, USA.,Department of Cell Systems & Anatomy, The University of Texas Health Science Center at San Antonio, San Antonio, TX, USA
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Jalal M, Dutta A, Das T, Islam M. First detection of plasmid-mediated colistin-resistance gene (mcr-1, mcr-2 and mcr-3) in Escherichia coli isolated from breeder poultry of Bangladesh. Int J Infect Dis 2020. [DOI: 10.1016/j.ijid.2020.09.082] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
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Rana E, Islam M, Das T, Dutta A, Ahad A, Biswas P, Barua H. Methicillin-resistant coagulase positive Staphylococcus aureus and Staphylococcus pseudintermedius circulating in dogs in Bangladesh. Int J Infect Dis 2020. [DOI: 10.1016/j.ijid.2020.09.124] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
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Jadon R, Benson R, Das T, Barnett G. PD-0051: The impact of neuroradiology collaboration in head and neck cancer radiotherapy peer review. Radiother Oncol 2020. [DOI: 10.1016/s0167-8140(21)00077-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Pal A, Das T, Ghosh S, Nandi M. Supercapacitor behaviour of manganese dioxide decorated mesoporous silica synthesized by a rapid sol-gel inverse micelle method. Dalton Trans 2020; 49:12716-12730. [PMID: 32959828 DOI: 10.1039/d0dt01237h] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
A new type of mesoporous silica (MS) with high surface area and large pore volume has been synthesised by employing a rapid sol-gel based inverse micelle method and electrochemically active metal center, manganese, has been incorporated into it. The MnO2 decorated silica composites are obtained through the wet impregnation technique using KMnO4 followed by their reduction under neutral conditions. The structure and surface area of the samples have been characterised by powder X-ray diffraction (XRD), BET surface area and pore size analysis, transmission and scanning electron microscopy (TEM and FE-SEM), FT-IR spectroscopy and X-ray photoelectron spectroscopy (XPS). Electrochemical techniques, i.e. cyclic voltammetry (CV), galvanostatic charge-discharge (GCD) and electrochemical impedance spectroscopy (EIS), have been used to evaluate the electrochemical properties of the composites. The resultant composite MS/MnO2-3 with a significantly high surface area (453 m2 g-1) is found to exhibit a superior specific capacitance of 1158.50 F g-1 at a scan rate of 5 mV s-1 which is very close to the theoretical value and retains 87.8% of its capacitance up to 1000 cycles at 1 A g-1 current density. The outstanding electrochemical performance of the composite can be attributed to the high surface area and uniform pore size distribution of the novel silica host which simultaneously increases the electrochemically active centres, promotes electrolyte penetration and enhances electron transport. The simplicity of the synthesis process developed here is interesting for wide-scale production of MnO2-based electro-active materials.
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Affiliation(s)
- Ananya Pal
- Integrated Science Education and Research Centre, Siksha Bhavana, Visva-Bharati, Santiniketan 731 235, India.
| | - Trisha Das
- Integrated Science Education and Research Centre, Siksha Bhavana, Visva-Bharati, Santiniketan 731 235, India.
| | - Susanta Ghosh
- Integrated Science Education and Research Centre, Siksha Bhavana, Visva-Bharati, Santiniketan 731 235, India.
| | - Mahasweta Nandi
- Integrated Science Education and Research Centre, Siksha Bhavana, Visva-Bharati, Santiniketan 731 235, India.
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Saha S, Roy A, Ray A, Das T, Nandi M, Ghosh B, Das S. Effect of particle morphology on the electrochemical performance of hydrothermally synthesized NiMn2O4. Electrochim Acta 2020. [DOI: 10.1016/j.electacta.2020.136515] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2022]
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Miryahyaei S, Das T, Othman M, Batstone D, Eshtiaghi N. Anaerobic co-digestion of sewage sludge with cellulose, protein, and lipids: Role of rheology and digestibility. Sci Total Environ 2020; 731:139214. [PMID: 32417486 DOI: 10.1016/j.scitotenv.2020.139214] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2020] [Revised: 04/24/2020] [Accepted: 05/02/2020] [Indexed: 06/11/2023]
Abstract
Rheology is known to have an impact on the performance of digesters, but the effect of additional substrates (co-digestion) is poorly understood. The main objective of this study was to investigate the effects of the addition of cellulose, protein and lipids to substrates on the rheological behaviour and biogas production of the mixture of primary sludge (PS) and waste-activated sludge (WAS) in a batch system. A mixture of PS and WAS to form the main substrate was anaerobically co-digested with different types of organic matter (cellulose, protein and lipids) as co-substrates at different co-substrate to main substrate ratios of 2-8 (wt%) under mesophilic conditions and below ammonia inhibition levels. Yield stress (τy) and the flow consistency index (k) of the combined feed in the case of cellulose and protein were significantly dependent on the amount of co-substrate added, while there was an insignificant impact on these properties when lipids were added. Cellulose significantly increased τy and k in the feed, which resulted in poor fluidity and the improper homogenisation of the digester content, and consequently decreased the biogas yield. In contrast, the biogas yield was improved through the addition of 2% to 6% protein despite an increase in τy and k of the feed, but the methane yield decreased at 7% and 8% levels of protein concentration. This observation indicates that the threshold for τy and k of the digester media depends on the organic nature and digestibility of the substrate. There was no significant impact on the flow properties of the initial mixture when lipids were added, and their addition increased the biogas yield. A first-order kinetic reaction model was used for predicting the yield of methane from these digesters. The rate constant values revealed an increasing trend, with the highest for protein then lipids then cellulose.
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Affiliation(s)
- S Miryahyaei
- Chemical and Environmental Engineering, School of Engineering, RMIT University, 3001 Melbourne, Australia
| | - T Das
- Chemical and Environmental Engineering, School of Engineering, RMIT University, 3001 Melbourne, Australia
| | - M Othman
- Chemical and Environmental Engineering, School of Engineering, RMIT University, 3001 Melbourne, Australia
| | - D Batstone
- Advanced Water Management Centre, The University of Queensland, Brisbane, Australia
| | - N Eshtiaghi
- Chemical and Environmental Engineering, School of Engineering, RMIT University, 3001 Melbourne, Australia.
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Das T, Singha D, Nandi M. The big effect of a small change: formation of CuO nanoparticles instead of covalently bound Cu(ii) over functionalized mesoporous silica and its impact on catalytic efficiency. Dalton Trans 2020; 49:10138-10155. [PMID: 32662469 DOI: 10.1039/d0dt01922d] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
Two different heterogeneous catalysts, one with Cu(ii) covalently bonded to functionalized mesoporous silica (FMS-Cu(II)) and another with CuO nanoparticles immobilized over the same silica (FMS-CuO-np), have been synthesized by a common route but with a minor alteration in the sequence of addition of reagents. It is interesting to find that by merely changing the order of the addition of reagents Cu(ii) can be incorporated into the framework in two different forms. In one case Cu(ii) binds to the N and O donor centers present in the functionalized material whereas in the other case CuO nanoparticles are generated in situ. The materials have been thoroughly characterized by powder X-ray diffraction, nitrogen adsorption/desorption, transmission electron microscopy, thermal analysis, FT-IR spectroscopy, solid state MAS-NMR spectroscopy and atomic absorption spectrophotometric studies. The synthesized products have been examined for their catalytic efficiencies in the oxidation of olefins, as a model case. Styrene, α-methyl styrene, cyclohexene, trans-stilbene and cyclooctene have been used as substrates in the presence of tert-butyl hydroperoxide as the oxidant in acetonitrile medium under mild conditions. The products of the catalytic reactions have been identified and estimated by gas chromatography and gas chromatography-mass spectrometry. The rate of conversion of the substrates for both the catalysts is high and the selectivity is also good. But from comparative studies, it is found that FMS-CuO-np which contains CuO nanoparticles shows better efficiency than FMS-Cu(II). The catalysts have been recycled for five catalytic cycles without showing much decrease in their catalytic activity.
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Affiliation(s)
- Trisha Das
- Integrated Science Education and Research Centre, Siksha Bhavana, Visva-Bharati University, Santiniketan 731 235, India.
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Sivaprasad S, Raman R, Conroy D, Mohan, Wittenberg R, Rajalakshmi R, Majeed A, Krishnakumar S, Prevost T, Parameswaran S, Turowski P, Maheswari U, Khobragade R, Netuveli G, Sadanandan R, Greenwood J, Ramasamy K, Rao M, Bergeles C, Das T. The ORNATE India Project: United Kingdom-India Research Collaboration to tackle visual impairment due to diabetic retinopathy. Eye (Lond) 2020; 34:1279-1286. [PMID: 32398841 DOI: 10.1038/s41433-020-0854-8] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2020] [Revised: 03/15/2020] [Accepted: 03/17/2020] [Indexed: 01/02/2023] Open
Abstract
INTRODUCTION The ORNATE India project is funded by the UK Research and Innovation (UKRI) through the Global Challenges Research Fund. The aim is to build research capacity and capability in India and the UK to tackle global burden of diabetes-related visual impairment. As there are over 77 million people with diabetes in India, it is challenging to screen every person with diabetes annually for sight-threatening diabetic retinopathy (DR). Therefore, alternate safe approaches need to be developed so that those at-risk of visual impairment due to DR is identified promptly and treated. METHODS The project team utilised diverse global health strategies and research methods to co-design work packages to build research capacity and capability to ensure effective, affordable and efficient DR services are made available for the population. The strategies and methods employed included health system strengthening; implementation science; establishing care pathways; co-designing collaborative studies on affordable technologies, developing quality standards and guidelines to decrease variations in care; economic analysis; risk modelling and stratification. Five integrated work packages have been developed to deal with all aspects of DR care. These included implementation of a DR screening programme in the public health system in a district in Kerala, evaluating regional prevalence of diabetes and DR and assessing ideal tests for holistic screening for diabetes and its complications in 20 areas in India, utilising artificial intelligence on retinal images to facilitate DR screening, exploring biomarker and biosensor research to detect people at risk of diabetes complications, estimating cost of blindness in India and risk modelling to develop risk-based screening models for diabetes and its complications. A large collaborative network will be formed to propagate research, promote shared learning and bilateral exchanges between high- and middle-income countries to tackle diabetes-related blindness.
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Affiliation(s)
- S Sivaprasad
- NIHR Biomedical Research Centre, Moorfields Eye Hospital NHS Foundation Trust, London, UK.
| | - R Raman
- Vision Research Foundation, Sankara Nethralaya, Chennai, India
| | - D Conroy
- UCL Institute of Ophthalmology, London, UK
| | - Mohan
- Madras Diabetes Research Foundation, Chennai, India
| | | | | | - A Majeed
- Imperial College London, London, UK
| | - S Krishnakumar
- Vision Research Foundation, Sankara Nethralaya, Chennai, India
| | | | - S Parameswaran
- Vision Research Foundation, Sankara Nethralaya, Chennai, India
| | - P Turowski
- UCL Institute of Ophthalmology, London, UK
| | | | | | | | | | | | - K Ramasamy
- Aravind Medical Research Foundation, Madurai, India
| | - M Rao
- Imperial College London, London, UK
| | | | - T Das
- Hyderabad Eye Research Foundation, L V Prasad Eye Institute, Hyderabad, India
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Islam M, Sarker K, Das T, Reaz R, Bayzid MS. STELAR: a statistically consistent coalescent-based species tree estimation method by maximizing triplet consistency. BMC Genomics 2020; 21:136. [PMID: 32039704 PMCID: PMC7011378 DOI: 10.1186/s12864-020-6519-y] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2019] [Accepted: 01/20/2020] [Indexed: 12/14/2022] Open
Abstract
Background Species tree estimation is frequently based on phylogenomic approaches that use multiple genes from throughout the genome. However, estimating a species tree from a collection of gene trees can be complicated due to the presence of gene tree incongruence resulting from incomplete lineage sorting (ILS), which is modelled by the multi-species coalescent process. Maximum likelihood and Bayesian MCMC methods can potentially result in accurate trees, but they do not scale well to large datasets. Results We present STELAR (Species Tree Estimation by maximizing tripLet AgReement), a new fast and highly accurate statistically consistent coalescent-based method for estimating species trees from a collection of gene trees. We formalized the constrained triplet consensus (CTC) problem and showed that the solution to the CTC problem is a statistically consistent estimate of the species tree under the multi-species coalescent (MSC) model. STELAR is an efficient dynamic programming based solution to the CTC problem which is highly accurate and scalable. We evaluated the accuracy of STELAR in comparison with SuperTriplets, which is an alternate fast and highly accurate triplet-based supertree method, and with MP-EST and ASTRAL – two of the most popular and accurate coalescent-based methods. Experimental results suggest that STELAR matches the accuracy of ASTRAL and improves on MP-EST and SuperTriplets. Conclusions Theoretical and empirical results (on both simulated and real biological datasets) suggest that STELAR is a valuable technique for species tree estimation from gene tree distributions.
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Affiliation(s)
- Mazharul Islam
- Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka, 1205, Bangladesh
| | - Kowshika Sarker
- Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka, 1205, Bangladesh
| | - Trisha Das
- Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka, 1205, Bangladesh
| | - Rezwana Reaz
- Department of Computer Science, The University of Texas at Austin, Texas, 78712, USA
| | - Md Shamsuzzoha Bayzid
- Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka, 1205, Bangladesh.
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Ghosh S, Das T. Cognitive Dysfunction in Elderly Diabetics: A Preliminary Study. J Assoc Physicians India 2020; 68:104. [PMID: 31979962] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Affiliation(s)
- S Ghosh
- KPC medical college and hospital,jadavpur
| | - T Das
- KPC medical college and hospital,jadavpur
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Ryan A, Bates E, Danson S, Das T, Fisher P, Hatton M, Lee C, Young R, Taylor F, Marshall R. Outcomes of patients in South Yorkshire with advanced non-small-cell lung cancer treated with second-line atezolizumab following induction with chemotherapy. Lung Cancer 2020. [DOI: 10.1016/s0169-5002(20)30153-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Das T, Singha D, Pal A, Nandi M. Mesoporous silica based recyclable probe for colorimetric detection and separation of ppb level Hg 2+ from aqueous medium. Sci Rep 2019; 9:19378. [PMID: 31852977 PMCID: PMC6920407 DOI: 10.1038/s41598-019-55910-4] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2019] [Accepted: 11/04/2019] [Indexed: 02/01/2023] Open
Abstract
Functional mesoporous silica probes, MCM-TFM and SBA-TFM, have been synthesized with varying pore sizes and having S-donor sites judiciously selected to bind soft metal centers. The soft S-donor centers are contributed by the thiol functional groups that are introduced into the silica matrices by functionalization with tris(4-formylphenyl)amine followed by 2-aminothiophenol. The materials rapidly and selectively detect Hg2+ colorimetrically and the change in color profile can be perceived through bare eyes. The probes can decontaminate the pollutant heavy metal from aqueous medium at ppb level and the materials are recyclable and reusable for several separation cycles.
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Affiliation(s)
- Trisha Das
- Integrated Science Education and Research Centre, Siksha Bhavana, Visva-Bharati, Santiniketan, 731235, India
| | - Debdas Singha
- Integrated Science Education and Research Centre, Siksha Bhavana, Visva-Bharati, Santiniketan, 731235, India
| | - Ananya Pal
- Integrated Science Education and Research Centre, Siksha Bhavana, Visva-Bharati, Santiniketan, 731235, India
| | - Mahasweta Nandi
- Integrated Science Education and Research Centre, Siksha Bhavana, Visva-Bharati, Santiniketan, 731235, India.
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John JK, Das T, Sethi M, Kattoor J, Tomar N, Saikumar G. Epidemiological study of porcine teschovirus infection in pigs at Bareilly, Uttar Pradesh, India. BIOL RHYTHM RES 2019. [DOI: 10.1080/09291016.2019.1627645] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- J. K. John
- Swine Disease Laboratory, Division of Pathology, ICAR- Indian Veterinary Research Institute, Bareilly, India
| | - T. Das
- Swine Disease Laboratory, Division of Pathology, ICAR- Indian Veterinary Research Institute, Bareilly, India
| | - M. Sethi
- Swine Disease Laboratory, Division of Pathology, ICAR- Indian Veterinary Research Institute, Bareilly, India
| | - J.J. Kattoor
- Swine Disease Laboratory, Division of Pathology, ICAR- Indian Veterinary Research Institute, Bareilly, India
| | - N. Tomar
- Swine Disease Laboratory, Division of Pathology, ICAR- Indian Veterinary Research Institute, Bareilly, India
| | - G. Saikumar
- Swine Disease Laboratory, Division of Pathology, ICAR- Indian Veterinary Research Institute, Bareilly, India
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Dutta A, Sengupta D, Paul S, Chakraborty S, Mukherjee S, Das T. A new insight into tumour immune-evasion: Crosstalk between cancer stem cells and T regulatory cells. Ann Oncol 2019. [DOI: 10.1093/annonc/mdz438.020] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Kumari S, Saikumar G, Desingu PA, Das T, Singh R. Immunohistochemical detection of naturally occurring porcine Sapelovirus infection in Indian pigs. J Immunoassay Immunochem 2019; 40:676-684. [PMID: 31603022 DOI: 10.1080/15321819.2019.1675695] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
We investigated immunohistochemical detection of porcine Sapelovirus (PSV) in naturally infected pigs of different ages. Forty-nine fecal samples, intestinal contents and other tissue samples from dead pigs were screened in previous study using reverse transcription polymerase chain reaction (RT-PCR) for PSV infection. Eight animals were positive for PSV based on RT-PCR examination. Gross lesions were recorded mainly in the large and small intestines. Microscopic examination of intestines showed severe enteritis. Tissue sections of all organs from PSV positive animals were immunostained using hyperimmune serum raised in rats against PSV that had been grown in a BHK-21 cell line. Staining of PSV was found only in the large and small intestines.
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Affiliation(s)
- Swati Kumari
- Division of Pathology, Indian Council of Agricultural Research-Indian Veterinary Research Institute, Bareilly, India
| | - G Saikumar
- Division of Pathology, Indian Council of Agricultural Research-Indian Veterinary Research Institute, Bareilly, India
| | - P A Desingu
- Division of Pathology, Indian Council of Agricultural Research-Indian Veterinary Research Institute, Bareilly, India
| | - T Das
- Division of Pathology, Indian Council of Agricultural Research-Indian Veterinary Research Institute, Bareilly, India
| | - Rahul Singh
- Division of Pathology, Indian Council of Agricultural Research-Indian Veterinary Research Institute, Bareilly, India
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Miryahyaei S, Olinga K, Abdul Muthalib FA, Das T, Ab Aziz MS, Othman M, Baudez JC, Batstone D, Eshtiaghi N. Impact of rheological properties of substrate on anaerobic digestion and digestate dewaterability: New insights through rheological and physico-chemical interaction. Water Res 2019; 150:56-67. [PMID: 30508714 DOI: 10.1016/j.watres.2018.11.049] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2018] [Revised: 11/17/2018] [Accepted: 11/17/2018] [Indexed: 06/09/2023]
Abstract
Mesophilic batch anaerobic digesters fed by different substrates were set up to identify the role of substrate rheology in anaerobic digestion performance while operating below the toxic level. Five substrates of different rheological behaviour but at the same amount of organic matters were prepared by addition of different amount of an inert material (0, 0.03, 0.07, 0.11, and 0.20 g) per g of waste activated sludge (WAS). To gain a comprehensive insight, the interactive relationship between substrate rheology, physico-chemical properties and biogas production as well as digestate dewaterability was investigated. The results proved that better access of microorganisms to organic matters improved the digester performance and led to 19.29% and 12.5% increase in biogas yield and VS removal efficiency, respectively. Moreover, the statistical analysis showed that consistency index and loss modulus of sludge could be employed as promising indications for biogas yield while yield stress could predict dewaterability of digestate as far as the other physico-chemical properties remained unchanged. During digestion measurement of consistency index and loss modulus of digestate could be performed as a reliable tool to monitor biogas production.
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Affiliation(s)
- S Miryahyaei
- Chemical and Environmental Engineering, School of Engineering, RMIT University, Melbourne, Australia
| | - K Olinga
- Chemical and Environmental Engineering, School of Engineering, RMIT University, Melbourne, Australia
| | - F A Abdul Muthalib
- Chemical and Environmental Engineering, School of Engineering, RMIT University, Melbourne, Australia
| | - T Das
- Chemical and Environmental Engineering, School of Engineering, RMIT University, Melbourne, Australia
| | - M S Ab Aziz
- Chemical and Environmental Engineering, School of Engineering, RMIT University, Melbourne, Australia
| | - M Othman
- Chemical and Environmental Engineering, School of Engineering, RMIT University, Melbourne, Australia
| | - J C Baudez
- Luxembourg Institute of Science and Technology, Environmental Research and Innovation Department, Belvaux, Luxembourg
| | - D Batstone
- Advanced Water Management Centre, The University of Queensland, Brisbane, Australia
| | - N Eshtiaghi
- Chemical and Environmental Engineering, School of Engineering, RMIT University, Melbourne, Australia.
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Sonwani R, Giri B, Das T, Singh R, Rai B. Biodegradation of fluorene by neoteric LDPE immobilized Pseudomonas pseudoalcaligenes NRSS3 in a packed bed bioreactor and analysis of external mass transfer correlation. Process Biochem 2019. [DOI: 10.1016/j.procbio.2018.11.015] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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27
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Singha D, Das T, Satyanarayana L, Roy P, Nandi M. Rhodamine functionalized mesoporous silica as a chemosensor for the efficient sensing of Al3+, Cr3+ and Fe3+ ions and their removal from aqueous media. NEW J CHEM 2019. [DOI: 10.1039/c9nj03010g] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Rhodamine incorporated mesoporous silica acts as a selective chemosensor for Al3+, Cr3+ and Fe3+ ions and it is used for their separation from an aqueous medium.
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Affiliation(s)
- Debdas Singha
- Integrated Science Education and Research Centre
- Siksha Bhavana
- Visva-Bharati University
- India
| | - Trisha Das
- Integrated Science Education and Research Centre
- Siksha Bhavana
- Visva-Bharati University
- India
| | - Lanka Satyanarayana
- Analytical Chemistry Department
- CSIR-Indian Institute of Chemical Technology
- Hyderabad 500007
- India
| | - Partha Roy
- Department of Chemistry
- Jadavpur University
- Kolkata-700 032
- India
| | - Mahasweta Nandi
- Integrated Science Education and Research Centre
- Siksha Bhavana
- Visva-Bharati University
- India
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Elmushraf R, Clinch H, Salawu A, Fisher P, Young R, Lee C, Danson S, Bates E, Hatton M, Low L, Das T, Taylor F. The North Trent experience of the use of first line pembrolizumab in stage IIIB/IV non-small cell lung cancer. Lung Cancer 2019. [DOI: 10.1016/s0169-5002(19)30145-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Das T, Bartschat K, Bray I, Fursa D, Zatsarinny O, Ballance C, Chung HK, Ralchenko Y. Recommended electron-impact excitation and ionization cross sections for Be I. At Data Nucl Data Tables 2019; 127-128:10.1016/j.adt.2018.11.001. [PMID: 32116394 PMCID: PMC7047829 DOI: 10.1016/j.adt.2018.11.001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Analytic fits to the recommended electron-impact excitation and ionization cross sections for Be I are presented. The lowest 19 terms of configurations 2snl (n ≤ 4) and 2p 2 terms below the first ionization limit are considered. The fits are based on the accurate calculations with the convergent close coupling (CCC) method as well as the B-spline R-matrix (BSR) approach. The fitted cross sections provide rate coefficients that are believed to approximate the original data within 10% with very few exceptions. The oscillator strengths for the dipole-allowed transitions between all the considered states are calculated with the relativistic multi-configuration Dirac-Hartree-Fock (MCDHF) approach and compared with the CCC and BSR results. This comparison shows a very good agreement except for a handful of cases with likely strong cancellations.
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Affiliation(s)
- T. Das
- International Atomic Energy Agency, A-1400 Vienna,
Austria
| | - K. Bartschat
- Department of Physics and Astronomy, Drake University, Des
Moines, IA 50311, USA
| | - I. Bray
- Curtin Institute for Computation and Department of Physics,
Astronomy and Medical Radiation Science,Curtin University, GPO Box U1987, Perth, WA
6845, Australia
| | - D.V. Fursa
- Curtin Institute for Computation and Department of Physics,
Astronomy and Medical Radiation Science,Curtin University, GPO Box U1987, Perth, WA
6845, Australia
| | - O. Zatsarinny
- Department of Physics and Astronomy, Drake University, Des
Moines, IA 50311, USA
| | - C. Ballance
- School of Mathematics and Physics, Queen’s
University Belfast, Belfast BT7 1NN, Northern Ireland, United Kingdom
| | - H.-K. Chung
- International Atomic Energy Agency, A-1400 Vienna,
Austria
| | - Yu. Ralchenko
- National Institute of Standards and Technology,
Gaithersburg, MD 20899, USA
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30
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Das T, Chatterjee R, Majee A, Uyama H, Morgan D, Nandi M. In situ synthesis of CuO nanoparticles over functionalized mesoporous silica and their application in catalytic syntheses of symmetrical diselenides. Dalton Trans 2019; 48:17874-17886. [DOI: 10.1039/c9dt03418h] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
A versatile and novel mesoporous silica supported CuO nanoparticle catalyst (nCuO-FMS) and its application in the syntheses of symmetrical diselenides.
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Affiliation(s)
- Trisha Das
- Integrated Science Education and Research Centre
- Siksha Bhavana
- Visva-Bharati University
- Santiniketan 731 235
- India
| | - Rana Chatterjee
- Department of Chemistry
- Siksha Bhavana
- Visva-Bharati University
- Santiniketan 731235
- India
| | - Adinath Majee
- Department of Chemistry
- Siksha Bhavana
- Visva-Bharati University
- Santiniketan 731235
- India
| | - Hiroshi Uyama
- Department of Applied Chemistry
- Graduate School of Engineering
- Osaka University
- Osaka
- Japan
| | - David Morgan
- Cardiff Catalysis Institute
- School of Chemistry
- Cardiff University
- Cardiff CF10 3AT
- UK
| | - Mahasweta Nandi
- Integrated Science Education and Research Centre
- Siksha Bhavana
- Visva-Bharati University
- Santiniketan 731 235
- India
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Robinson S, Tahir B, Absalom K, Tripathi D, Fisher P, Das T, Lee C, Bates E, Hatton M. P1.17-05 Accelerated Radiotherapy for Non-Small Cell Lung Cancer: A 12 Year Retrospective Review of Two Dose Fractionation Schedules. J Thorac Oncol 2018. [DOI: 10.1016/j.jtho.2018.08.1038] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Das T, Alabi I, Colley M, Yan F, Griffith W, Bach S, Weintraub ST, Renthal R. Major venom proteins of the fire ant Solenopsis invicta: insights into possible pheromone-binding function from mass spectrometric analysis. Insect Mol Biol 2018; 27:505-511. [PMID: 29656567 PMCID: PMC6188847 DOI: 10.1111/imb.12388] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Proteins in the venom of the fire ant Solenopsis invicta have been suggested to function in pheromone binding. Venom from queens and workers contains different isoforms of these proteins, consistent with the differing pheromones they secrete, but questions remain about the venom protein composition and glandular source. We found that the queen venom contains a previously uncharacterized pheromone-binding protein paralogue known as Sol i 2X1. Using imaging mass spectrometry, we located the main venom proteins in the poison sac, implying that pheromones might have to compete with venom alkaloids for binding. Using the known structure of the worker venom protein Sol i 2w, we generated three-dimensional homology models of the worker venom protein Sol i 4.02, and of the two main venom proteins in queens and female alates, Sol i 2q and Sol i 2X1. Surprisingly, the models show that the proteins have relatively small internal hydrophobic binding pockets that are blocked by about 10 amino acids of the C-terminal region. For these proteins to function as carriers of hydrophobic ligands, a conformational change would be required to displace the C-terminal region, somewhat like the mechanism known to occur in the silk moth pheromone-binding protein.
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Affiliation(s)
- T Das
- Department of Biology, University of Texas at San Antonio, San Antonio, TX, USA
| | - I Alabi
- Department of Biology, University of Texas at San Antonio, San Antonio, TX, USA
| | - M Colley
- Department of Chemistry, University of Texas at San Antonio, San Antonio, TX, USA
| | - F Yan
- Department of Chemistry, University of Texas at San Antonio, San Antonio, TX, USA
| | - W Griffith
- Department of Chemistry, University of Texas at San Antonio, San Antonio, TX, USA
| | - S Bach
- Department of Chemistry, University of Texas at San Antonio, San Antonio, TX, USA
| | - S T Weintraub
- Department of Biochemistry and Structural Biology, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA
| | - R Renthal
- Department of Biology, University of Texas at San Antonio, San Antonio, TX, USA
- Department of Biochemistry and Structural Biology, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA
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Das T, Uyama H, Nandi M. Pd-bound functionalized mesoporous silica as active catalyst for Suzuki coupling reaction: Effect of OAcˉ, PPh3 and Clˉ ligands on catalytic activity. J SOLID STATE CHEM 2018. [DOI: 10.1016/j.jssc.2018.01.027] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Hatton M, Robinson S, Bradshaw J, Riley S, Das T, Lee C, Fisher P, Bates E, Tozer-Loft S, Tahir B. 111O Impact of cardiac doses on survival of non-small cell lung cancer (NSCLC) patients following radical accelerated radiotherapy. J Thorac Oncol 2018. [DOI: 10.1016/s1556-0864(18)30385-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Sanganalmath P, Lester JE, Bradshaw AG, Das T, Esler C, Roy AEF, Toy E, Lester JF, Button M, Wilson P, Comins C, Atherton P, Pickles R, Foweraker K, Walker GA, Keni M, Hatton MQ. Continuous Hyperfractionated Accelerated Radiotherapy (CHART) for Non-small Cell Lung Cancer (NSCLC): 7 Years' Experience From Nine UK Centres. Clin Oncol (R Coll Radiol) 2018; 30:144-150. [PMID: 29336865 DOI: 10.1016/j.clon.2017.12.019] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2017] [Revised: 08/27/2017] [Accepted: 11/06/2017] [Indexed: 01/15/2023]
Abstract
AIM Continuous hyperfractionated accelerated radiotherapy (CHART) remains an option to treat non-small cell lung cancer (NSCLC; NICE, 2011). We have previously published treatment outcomes from 1998-2003 across five UK centres. Here we update the UK CHART experience, reporting outcomes and toxicities for patients treated between 2003 and 2009. MATERIALS AND METHODS UK CHART centres were invited to participate in a retrospective data analysis of NSCLC patients treated with CHART from 2003 to 2009. Nine (of 14) centres were able to submit their data into a standard database. The Kaplan-Meier method estimated survival and the Log-rank test analysed the significance. RESULTS In total, 849 patients had CHART treatment, with a median age of 71 years (range 31-91), 534 (63%) were men, 55% had undergone positron emission tomography-computed tomography (PET-CT) and 26% had prior chemotherapy; 839 (99%) patients received all the prescribed treatment. The median overall survival was 22 months with 2 and 3 year survival of 47% and 32%, respectively. Statistically significant differences in survival were noted for stage IA versus IB (33.2 months versus 25 months; P = 0.032) and IIIA versus IIIB (20 months versus 16 months; P = 0.018). Response at 3 months and outcomes were significantly linked; complete response showing survival of 34 months against 19 months, 15 months and 8 months for partial response, stable and progressive disease, respectively (P < 0.001). Age, gender, performance status, prior chemotherapy and PET-CT did not affect the survival outcomes. Treatment was well tolerated with <5% reporting ≥grade 3 toxicity. CONCLUSION In routine practice, CHART results for NSCLC remain encouraging and we have been able to show an improvement in survival compared with the original trial cohort. We have confirmed that CHART remains deliverable with low toxicity rates and we are taking a dose-escalated CHART regimen forward in a randomised phase II study of sequential chemoradiotherapy against other accelerated dose-escalated schedules.
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Affiliation(s)
| | | | - A G Bradshaw
- Weston Park Hospital, Sheffield, UK; Newcastle on Tyne Hospitals NHS Trust, Freeman Hospital, Newcastle, UK
| | - T Das
- Weston Park Hospital, Sheffield, UK
| | - C Esler
- University Hospitals of Leicester NHS Trust, Leicester, UK
| | - A E F Roy
- Plymouth Hospitals NHS Trust, Plymouth, UK
| | - E Toy
- Royal Devon and Exeter NHS Foundation Trust, Exeter, UK
| | | | - M Button
- Velindre Cancer Centre, Cardiff, UK
| | - P Wilson
- University Hospitals Bristol NHS Trust, Bristol, UK
| | - C Comins
- University Hospitals Bristol NHS Trust, Bristol, UK
| | - P Atherton
- Newcastle on Tyne Hospitals NHS Trust, Freeman Hospital, Newcastle, UK
| | - R Pickles
- Newcastle on Tyne Hospitals NHS Trust, Freeman Hospital, Newcastle, UK
| | - K Foweraker
- Nottingham University Hospitals NHS Trust, City Hospital, Nottingham, UK
| | - G A Walker
- Derby Hospitals NHS Trust, Royal Derby Hospital, UK
| | - M Keni
- Derby Hospitals NHS Trust, Royal Derby Hospital, UK
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Kumar D, Das T, Giri BS, Verma B. Characterization and compositional analysis of highly acidic karanja oil and its potential feedstock for enzymatic synthesis of biodiesel. NEW J CHEM 2018. [DOI: 10.1039/c8nj03084g] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In the present study, we focused on the synthesis of biodiesel fromPseudomonas cepacia, crude karanja oil by the process of enzymatic transesterification using bio-support materials, such as lipase immobilized on polyvinyl alcohol/AlgNa.
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Affiliation(s)
- D. Kumar
- Department of Chemical Engineering & Technology
- IIT (BHU)
- Varanasi-221005
- India
| | - T. Das
- Department of Chemical Engineering & Technology
- IIT (BHU)
- Varanasi-221005
- India
| | - B. S. Giri
- Department of Chemical Engineering & Technology
- IIT (BHU)
- Varanasi-221005
- India
| | - B. Verma
- Department of Chemical Engineering & Technology
- IIT (BHU)
- Varanasi-221005
- India
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Garikipati S, Prakash A, Alhilali M, Burnett A, Lee C, Young R, Danson S, Bates E, Fisher P, Hatton M, Das T. Management and outcomes of patients with small cell lung cancer in North Trent. Lung Cancer 2018. [DOI: 10.1016/s0169-5002(18)30194-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Robinson S, Absalom K, Das T, Lee C, Fisher P, Bates E, Hatton M. Post-operative radiotherapy (PORT) for incompletely resected non-small cell lung cancer (NSCLC): single centre audit of outcomes. Lung Cancer 2018. [DOI: 10.1016/s0169-5002(18)30180-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Low L, Salawu A, Bates E, Young R, Danson S, Fisher P, Hatton M, Lee C, Das T, Taylor F. The North Trent experience of administering pembrolizumab to previously treated patients with advanced non-small cell lung cancer. Lung Cancer 2018. [DOI: 10.1016/s0169-5002(18)30110-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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40
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Das T, Uyama H, Nandi M. Pronounced effect of pore dimension of silica support on Pd-catalyzed Suzuki coupling reaction under ambient conditions. NEW J CHEM 2018. [DOI: 10.1039/c8nj00254a] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The pore size of the mesoporous silica support affects the reactivity of heterogeneous palladium catalysts in the Suzuki reaction under ambient conditions, which is leveled at higher temperature.
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Affiliation(s)
- Trisha Das
- Integrated Science Education and Research Centre
- Siksha Bhavana
- Visva-Bharati University
- Santiniketan 731 235
- India
| | - Hiroshi Uyama
- Department of Applied Chemistry
- Graduate School of Engineering
- Osaka University
- Suita
- Japan
| | - Mahasweta Nandi
- Integrated Science Education and Research Centre
- Siksha Bhavana
- Visva-Bharati University
- Santiniketan 731 235
- India
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Robinson S, Absalom K, Lankathilake A, Das T, Lee C, Fisher P, Bates E, Hatton M. Radical radiotherapy for non-small cell lung cancer (NSCLC): real world outcomes for two accelerated fractionation schedules. Lung Cancer 2018. [DOI: 10.1016/s0169-5002(18)30189-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Bhattacharjee A, Das T, Uyama H, Roy P, Nandi M. Cu- and Ni-Grafted Functionalized Mesoporous Silica as Active Catalyst for Olefin Oxidation. ChemistrySelect 2017. [DOI: 10.1002/slct.201702183] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
| | - Trisha Das
- Integrated Science Education and Research Centre; Siksha Bhavana; Visva-Bharati University; Santiniketan- 731235 India
| | - Hiroshi Uyama
- Department of Applied Chemistry; Graduate School of Engineering; Osaka University; 2-1 Yamadaoka, Suita Osaka 565-0871 Japan
| | - Partha Roy
- Department of Chemistry; Jadavpur University, Jadavpur; Kolkata- 700 032 India
| | - Mahasweta Nandi
- Integrated Science Education and Research Centre; Siksha Bhavana; Visva-Bharati University; Santiniketan- 731235 India
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Bhardwwaj P, Batra S, Dhopte S, Das T. Fibroid Degeneration - Myriad Presentation and Laparoscopic Management. J Minim Invasive Gynecol 2017. [DOI: 10.1016/j.jmig.2017.08.566] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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44
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Li M, Das T, Deng W, Wang Q, Li Y, Zhao L, Ma X, Wang Y, Yu H, Li X, Meng Y, Palaniyappan L, Li T. Clinical utility of a short resting-state MRI scan in differentiating bipolar from unipolar depression. Acta Psychiatr Scand 2017; 136:288-299. [PMID: 28504840 DOI: 10.1111/acps.12752] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 04/18/2017] [Indexed: 02/05/2023]
Abstract
OBJECTIVE Depression in bipolar disorder (BipD) requires a therapeutic approach that is from treating unipolar major depressive disorder (UniD), but to date, no reliable methods could separate these two disorders. The aim of this study was to establish the clinical validity and utility of a non-invasive functional MRI-based method to classify BipD from UniD. METHOD The degree of connectivity (degree centrality or DC) of every small unit (voxel) with every other unit of the brain was estimated in 22 patients with BipD and 22 age, gender, and depressive severity-matched patients with UniD and 22 healthy controls. Pattern classification analysis was carried out using a support-vector machine (SVM) approach. RESULTS Degree centrality pattern from 8-min resting fMRI discriminated BipD from UniD with an accuracy of 86% and diagnostic odds ratio of 9.6. DC was reduced in the left insula and increased in bilateral precuneus in BipD when compared to UniD. In this sample with a high degree of uncertainty (50% prior probability), positive predictive value of the DC test was 79%. CONCLUSION Degree centrality maps are potential candidate measures to separate bipolar depression from unipolar depression. Test performance reported here requires further pragmatic evaluation in regular clinical practice.
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Affiliation(s)
- M Li
- Mental Health Center, West China Hospital of Sichuan University, Chengdu, China.,State Key Laboratory of Biotherapy, Psychiatric Laboratory, West China Hospital, Sichuan University, Chengdu, Sichuan, China.,West China Brain Research Center, West China Hospital of Sichuan University, Chengdu, China
| | - T Das
- Robarts Research Institute & The Brain and Mind Institute, University of Western Ontario, London, ON, Canada.,Department of Psychiatry, University of Western Ontario, London, ON, Canada.,Lawson Health Research Institute, London, ON, Canada
| | - W Deng
- Mental Health Center, West China Hospital of Sichuan University, Chengdu, China.,State Key Laboratory of Biotherapy, Psychiatric Laboratory, West China Hospital, Sichuan University, Chengdu, Sichuan, China.,West China Brain Research Center, West China Hospital of Sichuan University, Chengdu, China
| | - Q Wang
- Mental Health Center, West China Hospital of Sichuan University, Chengdu, China.,State Key Laboratory of Biotherapy, Psychiatric Laboratory, West China Hospital, Sichuan University, Chengdu, Sichuan, China.,West China Brain Research Center, West China Hospital of Sichuan University, Chengdu, China
| | - Y Li
- Mental Health Center, West China Hospital of Sichuan University, Chengdu, China.,State Key Laboratory of Biotherapy, Psychiatric Laboratory, West China Hospital, Sichuan University, Chengdu, Sichuan, China.,West China Brain Research Center, West China Hospital of Sichuan University, Chengdu, China
| | - L Zhao
- Mental Health Center, West China Hospital of Sichuan University, Chengdu, China.,State Key Laboratory of Biotherapy, Psychiatric Laboratory, West China Hospital, Sichuan University, Chengdu, Sichuan, China.,West China Brain Research Center, West China Hospital of Sichuan University, Chengdu, China
| | - X Ma
- Mental Health Center, West China Hospital of Sichuan University, Chengdu, China.,State Key Laboratory of Biotherapy, Psychiatric Laboratory, West China Hospital, Sichuan University, Chengdu, Sichuan, China.,West China Brain Research Center, West China Hospital of Sichuan University, Chengdu, China
| | - Y Wang
- Mental Health Center, West China Hospital of Sichuan University, Chengdu, China.,State Key Laboratory of Biotherapy, Psychiatric Laboratory, West China Hospital, Sichuan University, Chengdu, Sichuan, China.,West China Brain Research Center, West China Hospital of Sichuan University, Chengdu, China
| | - H Yu
- Mental Health Center, West China Hospital of Sichuan University, Chengdu, China.,State Key Laboratory of Biotherapy, Psychiatric Laboratory, West China Hospital, Sichuan University, Chengdu, Sichuan, China.,West China Brain Research Center, West China Hospital of Sichuan University, Chengdu, China
| | - X Li
- Mental Health Center, West China Hospital of Sichuan University, Chengdu, China.,State Key Laboratory of Biotherapy, Psychiatric Laboratory, West China Hospital, Sichuan University, Chengdu, Sichuan, China.,West China Brain Research Center, West China Hospital of Sichuan University, Chengdu, China
| | - Y Meng
- Mental Health Center, West China Hospital of Sichuan University, Chengdu, China.,State Key Laboratory of Biotherapy, Psychiatric Laboratory, West China Hospital, Sichuan University, Chengdu, Sichuan, China.,West China Brain Research Center, West China Hospital of Sichuan University, Chengdu, China
| | - L Palaniyappan
- Robarts Research Institute & The Brain and Mind Institute, University of Western Ontario, London, ON, Canada.,Department of Psychiatry, University of Western Ontario, London, ON, Canada.,Lawson Health Research Institute, London, ON, Canada
| | - T Li
- Mental Health Center, West China Hospital of Sichuan University, Chengdu, China.,State Key Laboratory of Biotherapy, Psychiatric Laboratory, West China Hospital, Sichuan University, Chengdu, Sichuan, China.,West China Brain Research Center, West China Hospital of Sichuan University, Chengdu, China
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Goyal P, Padhi TR, Das T, Pradhan L, Sutar S, Butola S, Behera UC, Jain L, Jalali S. Outcome of universal newborn eye screening with wide-field digital retinal image acquisition system: a pilot study. Eye (Lond) 2017; 32:67-73. [PMID: 28737759 DOI: 10.1038/eye.2017.129] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2017] [Accepted: 04/27/2017] [Indexed: 12/25/2022] Open
Abstract
PurposeTo evaluate the outcome of universal newborn eye screening with wide-field digital retinal imaging (WFDRI) system.MethodsIn this pilot study, we examined 1152 apparently healthy newborn infants in the obstetrics and gynecology ward of a civil hospital in Eastern India over 1.5 years. The examination included external eye examination, red reflex test and fundus imaging by WFDRI (RetCam II, Clarity medical system, Pleasanton, CA, USA) by a trained optometrist. The pathologies detected, net monetary gain and skilled manpower saved were documented. The results were compared with three similar studies thus far published in the literature.ResultsOcular abnormality of any kind was seen in 172 (14.93%) babies. Retinal hemorrhage in 153 babies (88.9% of all abnormal findings) was the most common abnormality; it was bilateral in 118 (77.12%) babies and 4 babies had foveal hemorrhage. Other abnormalities included vitreous hemorrhage (n=1), congenital glaucoma (n=2), uveal coloboma (n=2), retinopathy mimicking retinopathy of prematurity (n=2), and cystic fovea (n=3). The retinal hemorrhages resolved spontaneously in all eyes. One baby with congenital glaucoma received surgery and the other was treated medically. The benefits included savings in skilled manpower, a net monetary gain of INR 4.195 million (US$ 62,612) and skilled manpower saving by 319.4 h.ConclusionsThe universal neonatal eye screening using WFDRI detected pathologies that needed immediate care or regular follow up; saved skilled manpower with a net monetary gain. But compared to a red reflex test the benefits were marginal in terms of detecting treatment warranting ocular pathologies.
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Affiliation(s)
- P Goyal
- Retina and Vitreous services, Shri Mithu Tulsi Chanrai Campus, LV Prasad Eye Institute, Bhubaneswar, India
| | - T R Padhi
- Retina and Vitreous services, Shri Mithu Tulsi Chanrai Campus, LV Prasad Eye Institute, Bhubaneswar, India
| | - T Das
- Smt. Kanuri Santhamma Center for Vitreoretinal Services, Kallam Anji Reddy Campus, LV Prasad Eye Institute, Hyderabad, India
| | - L Pradhan
- Infosys Pediatric Center, Capital Hospital, Bhubaneswar, India
| | - S Sutar
- Retina and Vitreous services, Shri Mithu Tulsi Chanrai Campus, LV Prasad Eye Institute, Bhubaneswar, India
| | - S Butola
- Retina and Vitreous services, Shri Mithu Tulsi Chanrai Campus, LV Prasad Eye Institute, Bhubaneswar, India
| | - U C Behera
- Retina and Vitreous services, Shri Mithu Tulsi Chanrai Campus, LV Prasad Eye Institute, Bhubaneswar, India
| | - L Jain
- Retina and Vitreous services, Shri Mithu Tulsi Chanrai Campus, LV Prasad Eye Institute, Bhubaneswar, India
| | - S Jalali
- Smt. Kanuri Santhamma Center for Vitreoretinal Services, Kallam Anji Reddy Campus, LV Prasad Eye Institute, Hyderabad, India
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Fatema K, Das T, Mannan A, Zaman SM. Frequency, Distribution of Congenital Anomaly and Associated Maternal Risk Factors. Mymensingh Med J 2017; 26:658-666. [PMID: 28919624] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
This study was done to find out the maternal risk factors associated with congenital anomaly. This cross-sectional observational study was carried out in the Department of Obstetrics and Gynaecology, Bangabandhu Sheikh Mujib Medical University (BSMMU) Hospital, Dhaka, Bangladesh from January 2011 to December 2011. During this study period 78 patients had pregnancy with congenital anomaly and delivered in the Department of Obstetrics and Gynaecology. Women with ultrasound report of congenitally abnormal fetus irrespective of gestational age were included. Clinical evaluation of neonates was done by experienced neonatologist. The frequency of congenital anomaly was 3.46%. Most of the women belong to age <35 years (97.43%). Congenital anomalies more commonly were seen in the primiparas (64.10%). Most frequent associated risk factor was the history of abortions (35.89%). Maternal infections during antenatal period were also high (15.58%). There were 58 males (74.35%) and 20 females (25.64%). There was positive history of delivery of congenital abnormal babies in 6 cases (7.6%). Mothers of eight cases (10.25%) had history of drug ingestion during pregnancy. Four cases (5.12%) of mothers had hypothyroidism and 6 cases of mothers (7.69%) had diabetes mellitus respectively.
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Affiliation(s)
- K Fatema
- Dr Kaniz Fatema, Assistant Professor, Department of Obstetrics and Gynecology, Bangabandhu Sheikh Mujib Medical University (BSMMU), Dhaka, Bangladesh
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Das T, Roy A, Uyama H, Roy P, Nandi M. 2-Hydroxy-naphthyl functionalized mesoporous silica for fluorescence sensing and removal of aluminum ions. Dalton Trans 2017; 46:7317-7326. [DOI: 10.1039/c7dt00369b] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
2-Hydroxy-naphthyl functionalized mesoporous silica has been used as a turn-on fluorescent chemosensor for Al3+ and used to remove it with high efficiency.
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Affiliation(s)
- Trisha Das
- Integrated Science Education and Research Centre
- Siksha Bhavana
- Visva-Bharati University
- Santiniketan-731235
- India
| | - Ankita Roy
- Department of Chemistry
- Jadavpur University
- Kolkata-700 032
- India
| | - Hiroshi Uyama
- Department of Applied Chemistry
- Graduate School of Engineering
- Osaka University
- Suita, Osaka
- Japan
| | - Partha Roy
- Department of Chemistry
- Jadavpur University
- Kolkata-700 032
- India
| | - Mahasweta Nandi
- Integrated Science Education and Research Centre
- Siksha Bhavana
- Visva-Bharati University
- Santiniketan-731235
- India
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Kakoudaki M, Marshall R, Danson S, Fisher P, Hatton M, Lee C, Das T, Bates E, Woll P, Taylor F. 67: Outcomes of patients in South Yorkshire who received maintenance pemetrexed treatment for non-squamous, non-small-cell cancer after induction chemotherapy with pemetrexed and cisplatin. Lung Cancer 2017. [DOI: 10.1016/s0169-5002(17)30117-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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John JK, Sethi M, Das T, Hingade SS, Arun A, Tomar N, Saikumar G. Occurrence of Opisthorchis spp. infection in liver of pigs: An abattoir survey. ACTA ACUST UNITED AC 2017. [DOI: 10.5958/0973-970x.2017.00031.1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Abstract
Medication nonadherence is a known problem after renal transplantation and can vary from one setting to another. Since it can lead to negative outcomes, it is important to develop intervention strategies to enhance adherence in a given setting using determinants identified through exploratory studies. We explored nonadherence in renal transplant recipients. A longitudinal survey was done with adult renal transplant recipients at a tertiary care public and two private hospitals of Kolkata. Subjects were followed-up for 1 year. After screening for medication adherence status by the four-item Morisky Medication Adherence Scale, those admitting to potential nonadherence were probed further. A patient was deemed to be nonadherent if failing to take medicines on appointed time (doses missed or delayed by more than 2 h) more than three times in any month during the observation period. A pretested questionnaire was used to explore potential determinants of nonadherence. Data of 153 patients recruited over a 2-year were analyzed. The extent of nonadherence with immunosuppressant regimens was about 31% overall; 44% in the public sector and 19% in the private sector (P < 0.001). Nonadherence with other medication was around 19% in both the sectors. Several potential demographic, socioeconomic and psychosocial determinants of nonadherence were identified on univariate analysis. However, logistic regression analysis singled out only the economic status. This study had updated the issue of nonadherence in renal transplant recipients in the Indian setting. Strategies to improve medication adherence can be planned by relevant stakeholders on the basis of these findings.
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Affiliation(s)
| | - A Taraphder
- Department of Nephrology, Institute of Postgraduate Medical Education and Research, Kolkata, West Bengal, India
| | - A Hazra
- Department of Pharmacology, Institute of Postgraduate Medical Education and Research, Kolkata, West Bengal, India
| | - T Das
- Department of Medicine, Institute of Postgraduate Medical Education and Research, Kolkata, West Bengal, India
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