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Im W, Park SY, Goo S, Yook S, Lee HL, Yang G, Youn HJ. Incorporation of CNF with Different Charge Property into PVP Hydrogel and Its Characteristics. Nanomaterials (Basel) 2021; 11:426. [PMID: 33567602 PMCID: PMC7915088 DOI: 10.3390/nano11020426] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/08/2021] [Revised: 01/31/2021] [Accepted: 02/05/2021] [Indexed: 01/16/2023]
Abstract
Cellulose nanofibril (CNF)-added polyvinylpyrrolidone (PVP) hydrogels were prepared using different types of CNFs and their properties were investigated. CNFs with different morphology and surface charge properties were prepared through quaternization and carboxymethylation pretreatments. The quaternized CNF exhibited the narrow and uniform width, and higher viscoelastic property compared to untreated and carboxymethylated CNF. When CNF was incorporated to PVP hydrogel, gel contents of all hydrogels were similar, irrespective of CNF addition quantity or CNF type. However, the absorptivity of the hydrogels in a swelling medium increased by adding CNF. In particular, the quaternized CNF-added PVP hydrogel exhibited the highest swelling ability. Unlike that of hydrogels with untreated and carboxymethylated CNFs, the storage modulus of PVP hydrogels after swelling significantly increased with an increase in the content of the quaternized CNF. These indicate that a PVP hydrogel with a high absorptivity and storage modulus can be prepared by incorporating the proper type of CNF.
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Affiliation(s)
- Wanhee Im
- Research Institute of Agriculture and Life Sciences, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul 08826, Korea; (W.I.); (H.L.L.)
- R&D Institute, Moorim P&P Co., 3-36 Ubonggangyang-ro, Onsan-eup, Ulju-gun, Ulsan 45011, Korea
| | - Shin Young Park
- Department of Forest Sciences, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul 08826, Korea;
| | - Sooim Goo
- Department of Agriculture, Forestry and Bioresources, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul 08826, Korea; (S.G.); (S.Y.)
| | - Simyub Yook
- Department of Agriculture, Forestry and Bioresources, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul 08826, Korea; (S.G.); (S.Y.)
| | - Hak Lae Lee
- Research Institute of Agriculture and Life Sciences, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul 08826, Korea; (W.I.); (H.L.L.)
- Department of Agriculture, Forestry and Bioresources, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul 08826, Korea; (S.G.); (S.Y.)
- State Key Laboratory of Biobased Material and Green Papermaking (Shandong Academy of Sciences), Qilu University of Technology, 3501 Daxue Rd, Changqing District, Jinan 250353, China;
| | - Guihua Yang
- State Key Laboratory of Biobased Material and Green Papermaking (Shandong Academy of Sciences), Qilu University of Technology, 3501 Daxue Rd, Changqing District, Jinan 250353, China;
| | - Hye Jung Youn
- Research Institute of Agriculture and Life Sciences, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul 08826, Korea; (W.I.); (H.L.L.)
- Department of Agriculture, Forestry and Bioresources, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul 08826, Korea; (S.G.); (S.Y.)
- State Key Laboratory of Biobased Material and Green Papermaking (Shandong Academy of Sciences), Qilu University of Technology, 3501 Daxue Rd, Changqing District, Jinan 250353, China;
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Rajabi-Abhari A, Shen Z, Oh K, Im W, Kwon S, Lee S, Lee HL. Development and Application of Nanosized Polymer-Stabilized Cobinders and Their Effect on the Viscoelastic Properties and Foaming Tendencies of Coating Colors. ACS Omega 2020; 5:9291-9300. [PMID: 32363279 PMCID: PMC7191588 DOI: 10.1021/acsomega.0c00154] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/13/2020] [Accepted: 04/01/2020] [Indexed: 06/11/2023]
Abstract
Polymer latexes have long been used as coating binders by various branches of industry due to their capacity to adhere coating components and increase the strength of the dried final coatings. In addition, these latexes have been known to affect the rheology of coating dispersions. Currently, emulsion polymerization is the most widely used method of producing polymer latexes. While the stability of these latexes is primarily provided by electrostatic repulsion between surfactants, this property also causes foaming problems during coating processes. In this research, these problems were addressed by preparing polymer-stabilized (PS) latexes that contained different concentrations of acrylic acid. Steric protection of the latexes was provided by a protective shell consisting of starch and poly(vinyl alcohol) (PVA). The viscosity, particle size, ζ-potential, and viscoelastic behavior of the prepared latexes were investigated as a function of pH, and their surface tension and foaming tendencies were evaluated. The latexes were applied as coating cobinders in calcium carbonate and clay coating dispersions, and the viscoelastic properties, surface tensions, and foaming tendencies of these mixtures were studied. The presence of acrylic acid monomers was found to be an important factor affecting the viscosity, particle size, and ζ-potential of the PS latexes prepared in this work, which were further found to generate less foam than comparable emulsion-polymerized latexes. Finally, coating color viscoelastic properties were modified via the partial substitution of styrene-butadiene (S/B) latexes with PS latexes.
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Affiliation(s)
- Araz Rajabi-Abhari
- Program
in Environmental Materials Science, Department of Forest Sciences,
College of Agriculture and Life Sciences, Seoul National University, 08826 Seoul, Republic
of Korea
| | - Zhenghui Shen
- Program
in Environmental Materials Science, Department of Forest Sciences,
College of Agriculture and Life Sciences, Seoul National University, 08826 Seoul, Republic
of Korea
| | - Kyudeok Oh
- Program
in Environmental Materials Science, Department of Forest Sciences,
College of Agriculture and Life Sciences, Seoul National University, 08826 Seoul, Republic
of Korea
- Research
Institute of Agriculture and Life Science, College of Agriculture
and Life Sciences, Seoul National University, 08826 Seoul, Republic of Korea
| | - Wanhee Im
- Program
in Environmental Materials Science, Department of Forest Sciences,
College of Agriculture and Life Sciences, Seoul National University, 08826 Seoul, Republic
of Korea
| | - Soojin Kwon
- Program
in Environmental Materials Science, Department of Forest Sciences,
College of Agriculture and Life Sciences, Seoul National University, 08826 Seoul, Republic
of Korea
| | - Sooyoung Lee
- Songkang
Industrial Co. Ltd., Samseong-myeong, Eumseong-gun 027651, Chungbuk-do, Republic of Korea
| | - Hak Lae Lee
- Program
in Environmental Materials Science, Department of Forest Sciences,
College of Agriculture and Life Sciences, Seoul National University, 08826 Seoul, Republic
of Korea
- Research
Institute of Agriculture and Life Science, College of Agriculture
and Life Sciences, Seoul National University, 08826 Seoul, Republic of Korea
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Park SY, Yook S, Goo S, Im W, Youn HJ. Preparation of Transparent and Thick CNF/Epoxy Composites by Controlling the Properties of Cellulose Nanofibrils. Nanomaterials (Basel) 2020; 10:nano10040625. [PMID: 32231002 PMCID: PMC7221880 DOI: 10.3390/nano10040625] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/13/2020] [Revised: 03/26/2020] [Accepted: 03/26/2020] [Indexed: 12/19/2022]
Abstract
Cellulose nanofibrils (CNFs) have been used as reinforcing elements in optically transparent composites by combination with polymer matrices. In this study, strong, optically transparent, and thick CNF/epoxy composites were prepared by immersing two or four layers of CNF sheets in epoxy resin. The morphology of the CNF, the preparation conditions of the CNF sheet, and the grammage and layer numbers of the CNF sheets were controlled. The solvent-exchanged CNF sheets resulted in the production of a composite with high transparency and low haze. The CNF with smaller width and less aggregated fibrils, which are achieved by carboxymethylation, and a high number of grinding passes are beneficial in the production of optically transparent CNF/epoxy composites. Both the grammage and number of stacked layers of sheets in a composite affected the optical and mechanical properties of the composite. A composite with a thickness of 450-800 μm was prepared by stacking two or four layers of CNF sheets in epoxy resin. As the number of stacked sheets increased, light transmittance was reduced and the haze increased. The CNF/epoxy composites with two layers of low grammage (20 g/m2) sheets exhibited high light transmittance (>90%) and low haze (<5%). In addition, the composites with the low grammage sheet had higher tensile strength and elastic modulus compared with neat epoxy and those with high grammage sheets.
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Affiliation(s)
- Shin Young Park
- Department of Forest Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul 08826, Korea; (S.Y.P.); (S.Y.); (S.G.)
| | - Simyub Yook
- Department of Forest Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul 08826, Korea; (S.Y.P.); (S.Y.); (S.G.)
| | - Sooim Goo
- Department of Forest Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul 08826, Korea; (S.Y.P.); (S.Y.); (S.G.)
| | - Wanhee Im
- Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul 08826, Korea;
| | - Hye Jung Youn
- Department of Forest Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul 08826, Korea; (S.Y.P.); (S.Y.); (S.G.)
- Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul 08826, Korea;
- Correspondence: ; Tel.: +82-2-880-4787
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Affiliation(s)
- Kyudeok Oh
- Department of Forest Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul 08826, Korea
- Research Institute of Agriculture and Life Sciences, Seoul 08826, Korea
| | - Araz Rajabi Abhari
- Department of Forest Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul 08826, Korea
| | - Wanhee Im
- Department of Forest Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul 08826, Korea
| | - Hak Lae Lee
- Department of Forest Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul 08826, Korea
- Research Institute of Agriculture and Life Sciences, Seoul 08826, Korea
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Im W, Oh K, Rajabi Abhari A, Youn HJ, Lee HL. Recycling of isopropanol for cost-effective, environmentally friendly production of carboxymethylated cellulose nanofibrils. Carbohydr Polym 2018; 208:365-371. [PMID: 30658812 DOI: 10.1016/j.carbpol.2018.12.093] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2018] [Revised: 12/28/2018] [Accepted: 12/29/2018] [Indexed: 11/26/2022]
Abstract
An approach to recycling isopropanol used in the carboxymethylation of pulp fiber was investigated as a cost-effective and environmentally friendly method of producing cellulose nanofibrils (CNF). Carboxymethylation of pulp fiber was carried out using isopropanol (IPA) as the sole solvent. IPA was recovered after carboxymethylation reaction and recycled in the next carboxymethylation reaction. Simple recycling of IPA decreased the reaction efficiency of carboxymethylation due to the increase of water content in the IPA. To dehydrate the recovered IPA, a 4 Å molecular sieve was used as a drying material. It was shown that dehydration restored carboxymethylation efficiency to the same level as when fresh IPA was used. The characteristics of the carboxymethylated CNFs produced using the recycled IPA were evaluated, including fibrillation tendency, average width, and width distribution, and it was shown that the use of recycled IPA after dehydration treatment did not cause any changes in carboxymethylated CNF properties. Recycling IPA after simple dehydration using a molecular sieve is thus a cost-effective and environmentally friendly method of producing carboxymethylated CNF.
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Affiliation(s)
- Wanhee Im
- Department of Forest Sciences, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 08826, South Korea.
| | - Kyudeok Oh
- Department of Forest Sciences, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 08826, South Korea.
| | - Araz Rajabi Abhari
- Department of Forest Sciences, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 08826, South Korea.
| | - Hye Jung Youn
- Department of Forest Sciences, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 08826, South Korea.
| | - Hak Lae Lee
- Department of Forest Sciences, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul, 08826, South Korea.
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Chung J, Yoo D, Im W, Choi J, Yi S, Youn H, Hwang I, Seong J, Yoon Y. Electroacupuncture at the Zusanli And Baihui Acupoints Ameliorates Type-2 Diabetes-Induced Reductions in Proliferating Cells and Differentiated Neuroblasts in the Hippocampal Dentate Gyrus With Increasing Brain-Derived Neurotrophic Factor Levels. J Acupunct Meridian Stud 2018. [DOI: 10.1016/j.jams.2018.10.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
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Affiliation(s)
- Kyudeok Oh
- Department
of Forest Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Korea
- Research Institute of Agriculture and Life Sciences, Seoul 151-921, Korea
| | - Jee-Hong Lee
- Department
of Forest Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Korea
| | - Wanhee Im
- Department
of Forest Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Korea
| | - Araz Rajabi Abhari
- Department
of Forest Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Korea
| | - Hak Lae Lee
- Department
of Forest Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Korea
- Research Institute of Agriculture and Life Sciences, Seoul 151-921, Korea
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Kim SC, Chung JY, Im W, Kim M, Kim M. Calpain cleaved-55kDa N-terminal huntingtin delocalizes from neurons to astrocytes after ischemic injury. Cell Mol Biol (Noisy-le-grand) 2011; 57 Suppl:OL1534-OL1542. [PMID: 21791172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2011] [Accepted: 06/30/2011] [Indexed: 05/31/2023]
Abstract
The huntingtin (htt) mutation causes a polyglutamine expansion in the N-terminal region of protein. Mutant N-htt proteolytic fragments aggregate and cause cell death in Huntington's disease (HD). The normal huntingtin also can be cleaved by calpain and produce N-terminal htt fragments following ischemic injury, but the fate of cleaved fragment in dead neurons in the brain are unclear. To determine the localization of huntingtin following proteolysis, we examined htt expression after transient ischemic injury. Huntingtin immunoreactivity in mixed cultures of neuronal and astrocytes-derived clonal cells showed alteration of immunoreactivity from neurons into astrocytes. In the brain, both focal and global ischemia induced reactive astrocytes that were co-immunoreactive for huntingtin with elevated GFAP expression. The immunoreactive huntingtin was 55kDa calpain-cleaved N-terminal fragment, which appeared initially in the process, and extended into the cytoplasm of astrocytes. The results showed, after ischemic injury, huntingtin accumulated in astrocytes indicating that astrocytes may play a role in uptake of cleaved N-htt fragments.
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Affiliation(s)
- S C Kim
- Department of Neurology, Biomedical Research Institute, Seoul National University Hospital, and Neuroscience Research Institute of SNUMRC, Seoul, Korea
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Im W, Chung JY, Kim SH, Kim M. Efficacy of autologous serum in human adipose-derived stem cells; cell markers, growth factors and differentiation. Cell Mol Biol (Noisy-le-grand) 2011; 57 Suppl:OL1470-OL1475. [PMID: 21396339] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2010] [Accepted: 03/07/2011] [Indexed: 05/30/2023]
Abstract
Human adipose-derived stem cells (hASCs) are a feasible source of stem cells for use in clinical applications. hASCs are typically cultured in medium containing fetal bovine serum (FBS); however, use of FBS is not recommended due to issues of clinical safety with regard to infections or immune response. Replacement of FBS with autologous human serum (autoHS) can eliminate these problems; however, their maintainability as potent ASCs in autoHS needs to be confirmed. Thus, we conducted an investigation of characterizations and functions of hASCs grown in medium containing autoHS compared to FBS. Cell counting and the WST-8 assay were used in assessment of the proliferation rate. In hASC cultured with culture medium plus autoHS or FBS, cell phenotypes were characterized by flow cytometry (CD13, CD29, CD31, CD34, and CD44) and expression of BDNF, HGF, IGF, LIF, NGF, and VEGF was determined by RT—PCR. Adipogenic differentiation was confirmed by oil red O stain. hASC showed greater expansion in AutoHS than in FBS. Cell surface markers of hASCs grown in autoHS (autoHS-hASCs) were similar to markers of those grown in FBS (FBS-hASCs). AutoHS-hASCs also expressed multiple growth factors as well as FBS-hASCs. In addition, autoHS was effective in growth of hASCs as well as FBS and autoHS-hASCs retained their ability for adipogenic differentiation. In summary, autoHS-hASCs have multiple growth factor expressions with the same cell surface markers as FBS—hASCs in vitro. Our results suggest that autoHS can provide sufficient ex vivo expansion of hASCs.
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Affiliation(s)
- W Im
- Department of Neurology, Clinical Research Institute, Seoul National University Hospital, 28 Yongon-dong, Seoul, South Korea
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Brooks B, Brooks C, MacKerell A, Nilsson L, Petrella R, Roux B, Won Y, Archontis G, Bartels C, Boresch S, Caflisch A, Caves L, Cui Q, Dinner A, Feig M, Fischer S, Gao J, Hodoscek M, Im W, Kuczera K, Lazaridis T, Ma J, Ovchinnikov V, Paci E, Pastor R, Post C, Pu J, Schaefer M, Tidor B, Venable RM, Woodcock HL, Wu X, Yang W, York D, Karplus M. CHARMM: the biomolecular simulation program. J Comput Chem 2009; 30:1545-614. [PMID: 19444816 PMCID: PMC2810661 DOI: 10.1002/jcc.21287] [Citation(s) in RCA: 5887] [Impact Index Per Article: 392.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
CHARMM (Chemistry at HARvard Molecular Mechanics) is a highly versatile and widely used molecular simulation program. It has been developed over the last three decades with a primary focus on molecules of biological interest, including proteins, peptides, lipids, nucleic acids, carbohydrates, and small molecule ligands, as they occur in solution, crystals, and membrane environments. For the study of such systems, the program provides a large suite of computational tools that include numerous conformational and path sampling methods, free energy estimators, molecular minimization, dynamics, and analysis techniques, and model-building capabilities. The CHARMM program is applicable to problems involving a much broader class of many-particle systems. Calculations with CHARMM can be performed using a number of different energy functions and models, from mixed quantum mechanical-molecular mechanical force fields, to all-atom classical potential energy functions with explicit solvent and various boundary conditions, to implicit solvent and membrane models. The program has been ported to numerous platforms in both serial and parallel architectures. This article provides an overview of the program as it exists today with an emphasis on developments since the publication of the original CHARMM article in 1983.
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Affiliation(s)
- B.R. Brooks
- Laboratory of Computational Biology, National Heart, Lung, and
Blood Institute, National Institutes of Health, Bethesda, MD 20892
| | - C.L. Brooks
- Departments of Chemistry & Biophysics, University of
Michigan, Ann Arbor, MI 48109
| | - A.D. MacKerell
- Department of Pharmaceutical Sciences, School of Pharmacy,
University of Maryland, Baltimore, MD, 21201
| | - L. Nilsson
- Karolinska Institutet, Department of Biosciences and Nutrition,
SE-141 57, Huddinge, Sweden
| | - R.J. Petrella
- Department of Chemistry and Chemical Biology, Harvard University,
Cambridge, MA 02138
- Department of Medicine, Harvard Medical School, Boston, MA
02115
| | - B. Roux
- Department of Biochemistry and Molecular Biology, University of
Chicago, Gordon Center for Integrative Science, Chicago, IL 60637
| | - Y. Won
- Department of Chemistry, Hanyang University, Seoul
133–792 Korea
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - M. Karplus
- Department of Chemistry and Chemical Biology, Harvard University,
Cambridge, MA 02138
- Laboratoire de Chimie Biophysique, ISIS, Université de
Strasbourg, 67000 Strasbourg France
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Nina M, Im W, Roux B. Optimized atomic radii for protein continuum electrostatics solvation forces. Biophys Chem 2007; 78:89-96. [PMID: 17030305 DOI: 10.1016/s0301-4622(98)00236-1] [Citation(s) in RCA: 82] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/1998] [Revised: 12/02/1998] [Accepted: 12/03/1998] [Indexed: 10/18/2022]
Abstract
Recently, we presented a Green's function approach for the calculation of analytic continuum electrostatic solvation forces based on numerical solutions of the finite-difference Poisson-Botzmann (FDPB) equation [Im et al., Comp. Phys. Comm. 111 (1998) 59]. In this treatment the analytic forces were explicitly defined as the first derivative of the FDPB continuum electrostatic free energy with respect to the coordinates of the solute atoms. A smooth intermediate region for the solute-solvent dielectric boundary needed to be introduced to avoid abrupt discontinuous variations in the solvation free energy and forces as a function of the atomic positions. In the present paper we extend the set of optimized radii, which was previously parametrized from molecular dynamics free energy simulations of the 20 standard amino acids with explicit solvent molecules [Nina et al., J. Phys. Chem. 101 (1997) 5239], to yield accurate solvation free energy by taking the influence of the smoothed dielectric region into account.
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Affiliation(s)
- M Nina
- Department of Physics, Université de Montréal, C.P. 6128, succ. Centre-Ville, Montréal, QC, Canada H3C 3J7
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Affiliation(s)
- B Roux
- Department of Biochemistry, Weill Medical College of Cornell University, 1300 York Avenue, New York, New York 10021, USA.
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Abstract
A computational algorithm based on Grand Canonical Monte Carlo (GCMC) and Brownian Dynamics (BD) is described to simulate the movement of ions in membrane channels. The proposed algorithm, GCMC/BD, allows the simulation of ion channels with a realistic implementation of boundary conditions of concentration and transmembrane potential. The method is consistent with a statistical mechanical formulation of the equilibrium properties of ion channels (; Biophys. J. 77:139-153). The GCMC/BD algorithm is illustrated with simulations of simple test systems and of the OmpF porin of Escherichia coli. The approach provides a framework for simulating ion permeation in the context of detailed microscopic models.
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Affiliation(s)
- W Im
- Groupe de Recherche en Transport Membranaire (GRTM), Départements de Physique et de Chimie, Université de Montréal, Montreal, Quebec H3C 3J7, Canada
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