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Le-Khac UN, Bolton M, Boxall NJ, Wallace SMN, George Y. Living review framework for better policy design and management of hazardous waste in Australia. Sci Total Environ 2024; 924:171556. [PMID: 38458450 DOI: 10.1016/j.scitotenv.2024.171556] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2023] [Revised: 02/25/2024] [Accepted: 03/04/2024] [Indexed: 03/10/2024]
Abstract
The significant increase in hazardous waste generation in Australia has led to the discussion over the incorporation of artificial intelligence into the hazardous waste management system. Recent studies explored the potential applications of artificial intelligence in various processes of managing waste. However, no study has examined the use of text mining in the hazardous waste management sector for the purpose of informing policymakers. This study developed a living review framework which applied supervised text classification and text mining techniques to extract knowledge using the domain literature data between 2022 and 2023. The framework employed statistical classification models trained using iterative training and the best model XGBoost achieved an F1 score of 0.87. Using a small set of 126 manually labelled global articles, XGBoost automatically predicted the labels of 678 Australian articles with high confidence. Then, keyword extraction and unsupervised topic modelling with Latent Dirichlet Allocation (LDA) were performed. Results indicated that there were 2 main research themes in Australian literature: (1) the key waste streams and (2) the resource recovery and recycling of waste. The implication of this framework would benefit the policymakers, researchers, and hazardous waste management organisations by serving as a real time guideline of the current key waste streams and research themes in the literature which allow robust knowledge to be applied to waste management and highlight where the gap in research remains.
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Affiliation(s)
- Uyen N Le-Khac
- Data Science and AI Department, Faculty of Information Technology, Monash University, Australia.
| | - Mitzi Bolton
- Monash Sustainable Development Institute, Monash University, Australia
| | - Naomi J Boxall
- Environment, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Australia
| | - Stephanie M N Wallace
- Centre for Anthropogenic Pollution Impact and Management (CAPIM), School of BioSciences, University of Melbourne, Australia
| | - Yasmeen George
- Data Science and AI Department, Faculty of Information Technology, Monash University, Australia
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George Y, Antony BJ, Ishikawa H, Wollstein G, Schuman JS, Garnavi R. Attention-Guided 3D-CNN Framework for Glaucoma Detection and Structural-Functional Association Using Volumetric Images. IEEE J Biomed Health Inform 2020; 24:3421-3430. [PMID: 32750930 DOI: 10.1109/jbhi.2020.3001019] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
The direct analysis of 3D Optical Coherence Tomography (OCT) volumes enables deep learning models (DL) to learn spatial structural information and discover new bio-markers that are relevant to glaucoma. Downsampling 3D input volumes is the state-of-art solution to accommodate for the limited number of training volumes as well as the available computing resources. However, this limits the network's ability to learn from small retinal structures in OCT volumes. In this paper, our goal is to improve the performance by providing guidance to DL model during training in order to learn from finer ocular structures in 3D OCT volumes. Therefore, we propose an end-to-end attention guided 3D DL model for glaucoma detection and estimating visual function from retinal structures. The model consists of three pathways with the same network architecture but different inputs. One input is the original 3D-OCT cube and the other two are computed during training guided by the 3D gradient class activation heatmaps. Each pathway outputs the class-label and the whole model is trained concurrently to minimize the sum of losses from three pathways. The final output is obtained by fusing the predictions of the three pathways. Also, to explore the robustness and generalizability of the proposed model, we apply the model on a classification task for glaucoma detection as well as a regression task to estimate visual field index (VFI) (a value between 0 and 100). A 5-fold cross-validation with a total of 3782 and 10,370 OCT scans is used to train and evaluate the classification and regression models, respectively. The glaucoma detection model achieved an area under the curve (AUC) of 93.8% compared with 86.8% for a baseline model without the attention-guided component. The model also outperformed six different feature based machine learning approaches that use scanner computed measurements for training. Further, we also assessed the contribution of different retinal layers that are relevant to glaucoma. The VFI estimation model achieved a Pearson correlation and median absolute error of 0.75 and 3.6%, respectively, for a test set of size 3100 cubes.
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George Y, Aldeen M, Garnavi R. Automatic Scale Severity Assessment Method in Psoriasis Skin Images Using Local Descriptors. IEEE J Biomed Health Inform 2019; 24:577-585. [PMID: 30990451 DOI: 10.1109/jbhi.2019.2910883] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Psoriasis is a chronic skin condition. Its clinical assessment involves four measures: erythema, scales, induration, and area. In this paper, we introduce a scale severity scoring framework for two-dimensional psoriasis skin images. Specifically, we leverage the bag-of-visual words (BoVWs) model for lesion feature extraction using superpixels as key points. BoVWs model is based on building a vocabulary with specific number of words (i.e., codebook size) by using a clustering algorithm with some local features extracted from a constructed set of key points. This is followed by three-class machine learning classifiers for scale scoring using support vector machine (SVM) and random forest. Besides, we examine eight different local color and texture descriptors, namely color histogram, local binary patterns, edge histogram descriptor, color layout descriptor, scalable color descriptor, color and edge directivity descriptor (CEDD), fuzzy color and texture histogram, and brightness and texture directionality histogram. Further, the selection of codebook and superpixel sizes are studied intensively. A psoriasis image set, consisting of 96 images, is used in this study. The conducted experiments show that color descriptors have the highest performance measures for scale severity scoring. This is followed by the combined color and texture descriptors, whereas texture-based descriptors come last. Moreover, K-means algorithm shows better results in vocabulary building than Gaussian mixed model, in terms of accuracy and computations time. Finally, the proposed method yields a scale severity scoring accuracy of 80.81% using the following setup: a superpixel of size [Formula: see text], a combined color and texture descriptor (i.e., CEDD), a constructed codebook of size 128 using K-means, and SVM for scale scoring.
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Abstract
Psoriasis is a chronic skin disease which can be life-threatening. Accurate severity scoring helps dermatologists to decide on the treatment. In this paper, we present a semi-supervised computer-aided system for automatic erythema severity scoring in psoriasis images. Firstly, the unsupervised stage includes a novel image representation method. We construct a dictionary, which is then used in the sparse representation for local feature extraction. To acquire the final image representation vector, an aggregation method is exploited over the local features. Secondly, the supervised phase is where various multi-class machine learning (ML) classifiers are trained for erythema severity scoring. Finally, we compare the proposed system with two popular unsupervised feature extractor methods, namely: bag of visual words model (BoVWs) and AlexNet pretrained model. Root mean square error (RMSE) and F1 score are used as performance measures for the learned dictionaries and the trained ML models, respectively. A psoriasis image set consisting of 676 images, is used in this study. Experimental results demonstrate that the use of the proposed procedure can provide a setup where erythema scoring is accurate and consistent. Also, it is revealed that dictionaries with large number of atoms and small patch sizes yield the best representative erythema severity features. Further, random forest (RF) outperforms other classifiers with F1 score 0.71, followed by support vector machine (SVM) and boosting with 0.66 and 0.64 scores, respectively. Furthermore, the conducted comparative studies confirm the effectiveness of the proposed approach with improvement of 9% and 12% over BoVWs and AlexNet based features, respectively.
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Affiliation(s)
- Yasmeen George
- Department of Electric and Electronic Engineering, University of Melbourne, VIC, Australia.
| | - Mohammad Aldeen
- Department of Electric and Electronic Engineering, University of Melbourne, VIC, Australia.
| | - Rahil Garnavi
- IBM Research - Australia, Department of Electrical and Electronic Engineering, University of Melbourne, VIC, Australia.
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George Y, Aldeen M, Garnavi R. Automatic psoriasis lesion segmentation in two-dimensional skin images using multiscale superpixel clustering. J Med Imaging (Bellingham) 2017; 4:044004. [PMID: 29152533 DOI: 10.1117/1.jmi.4.4.044004] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2017] [Accepted: 10/20/2017] [Indexed: 11/14/2022] Open
Abstract
Psoriasis is a chronic skin disease that is assessed visually by dermatologists. The Psoriasis Area and Severity Index (PASI) is the current gold standard used to measure lesion severity by evaluating four parameters, namely, area, erythema, scaliness, and thickness. In this context, psoriasis skin lesion segmentation is required as the basis for PASI scoring. An automatic lesion segmentation method by leveraging multiscale superpixels and [Formula: see text]-means clustering is outlined. Specifically, we apply a superpixel segmentation strategy on CIE-[Formula: see text] color space using different scales. Also, we suppress the superpixels that belong to nonskin areas. Once similar regions on different scales are obtained, the [Formula: see text]-means algorithm is used to cluster each superpixel scale separately into normal and lesion skin areas. Features from both [Formula: see text] and [Formula: see text] color bands are used in the clustering process. Furthermore, majority voting is performed to fuse the segmentation results from different scales to obtain the final output. The proposed method is extensively evaluated on a set of 457 psoriasis digital images, acquired from the Royal Melbourne Hospital, Melbourne, Australia. Experimental results have shown evidence that the method is very effective and efficient, even when applied to images containing hairy skin and diverse lesion size, shape, and severity. It has also been ascertained that CIE-[Formula: see text] outperforms other color spaces for psoriasis lesion analysis and segmentation. In addition, we use three evaluation metrics, namely, Dice coefficient, Jaccard index, and pixel accuracy where scores of 0.783%, 0.698%, and 86.99% have been achieved by the proposed method for the three metrics, respectively. Finally, compared with existing methods that employ either skin decomposition and support vector machine classifier or Euclidean distance in the hue-chrome plane, our multiscale superpixel-based method achieves markedly better performance with at least 20% accuracy enhancement.
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Affiliation(s)
- Yasmeen George
- University of Melbourne, Department of Electrical and Electronic Engineering, Victoria, Australia
| | - Mohammad Aldeen
- University of Melbourne, Department of Electrical and Electronic Engineering, Victoria, Australia
| | - Rahil Garnavi
- University of Melbourne, Department of Electrical and Electronic Engineering, Victoria, Australia.,IBM Research, Melbourne, Victoria, Australia
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Abstract
In this paper, we present a detailed comparison study of skin segmentation methods for psoriasis images. Different techniques are modified and then applied to a set of psoriasis images acquired from the Royal Melbourne Hospital, Melbourne, Australia, with aim of finding the best technique suited for application to psoriasis images. We investigate the effect of different colour transformations on skin detection performance. In this respect, explicit skin thresholding is evaluated with three different decision boundaries (CbCr, HS and rgHSV). Histogram-based Bayesian classifier is applied to extract skin probability maps (SPMs) for different colour channels. This is then followed by using different approaches to find a binary skin map (SM) image from the SPMs. The approaches used include binary decision tree (DT) and Otsu's thresholding. Finally, a set of morphological operations are implemented to refine the resulted SM image. The paper provides detailed analysis and comparison of the performance of the Bayesian classifier in five different colour spaces (YCbCr, HSV, RGB, XYZ and CIELab). The results show that histogram-based Bayesian classifier is more effective than explicit thresholding, when applied to psoriasis images. It is also found that decision boundary CbCr outperforms HS and rgHSV. Another finding is that the SPMs of Cb, Cr, H and B-CIELab colour bands yield the best SMs for psoriasis images. In this study, we used a set of 100 psoriasis images for training and testing the presented methods. True Positive (TP) and True Negative (TN) are used as statistical evaluation measures.
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Hedger A, George Y, Stimson N, Heesom T. Need for orthodontic truth. Br Dent J 2005; 199:754-5. [PMID: 16395337 DOI: 10.1038/sj.bdj.4813076] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Shoenfeld Y, Sherer Y, George Y, Harats D. beta 2-glycoprotein I in human and murine atherosclerosis. Isr Med Assoc J 2001; 3:85-7. [PMID: 11344830] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/20/2023]
Affiliation(s)
- Y Shoenfeld
- Department of Medicine B, Center of Autoimmune Diseases, Sheba Medical Center, Tel-Hashomer, Israel.
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Butler LO, George Y. The effect of both homologous and heterologous DNA on integration efficiencies in pneumococcal transformation. Mol Gen Genet 1981; 184:140-6. [PMID: 6950192 DOI: 10.1007/bf00271210] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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George Y, Butler LO. Suppressor mutations causing partial reversion in the amiA region of Pneumococcus. Mol Gen Genet 1979; 174:317-25. [PMID: 39221 DOI: 10.1007/bf00267805] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Mutants of an aminopterin-resistant strain of pneumococcus possessing four different suppressor genes have been isolated after mutagenesis with 5-BUdR. The suppressed strains exhibit a partial revertant phenotype since the parental aminopterin resistance remained unchanged but the associated sensitivity to an excess concentration of the branched chain amino acids L-isoleucine, L-valine and L-leucine was diminished almost to the level of the wild-type strain C13. The suppressor mutations had therefore dissociated the two properties associated with a mutation in the amiA cistron, namely aminopterin resistance and isoleucine sensitivity. The suppressor genes reduced the sensitivity to isoleucine of a number of amiA mutants, but had no effect on the level of resistance to a number of unrelated genes conferring resistance to other antibacterial substances. The suppressor mutations themselves did not confer resistance to aminopterin. Mapping of the suppressor mutations by recombination analysis and by clonal analysis showed them to be intragenic lying in the region near to the amiA-r19, amiA-r23, amiA-r17 loci.
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Sadek L, George Y. Mesio-distal inclination of posterior teeth in relation to various planes. Egypt Dent J 1979; 25:201-7. [PMID: 299151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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George Y, Sadek L. A contribution to the topography of the mylohyoid ridge and its relation to the apices of posterior teeth. Egypt Dent J 1979; 25:127-35. [PMID: 297558] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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George Y, Sadek L. The effect of honey on the epithelial attachment with reference to its cariogenicity (experimental investigation). Egypt Dent J 1978; 24:339-45. [PMID: 295724] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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Rozeik F, Sadek L, George Y. An investigation on the effect of Langerhans islets on dental caries and oral flora in the rat. Egypt Dent J 1978; 24:153-9. [PMID: 389606] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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Attia M, Soliman MM, George Y. Effect of thyroid hormones on the oral mucosa and submucosa. Egypt Dent J 1978; 24:139-51. [PMID: 92400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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George Y, Sadek L, Rozeik F. The effect of honey on the epithelial attachment. J Mo Dent Assoc 1978; 58:15-9, 44. [PMID: 277706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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Hassan MA, George Y, Rozeik F. A contribution to the formation of the transparent zone in dentine. Egypt Dent J 1977; 23:29-34. [PMID: 275040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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Tusques J, George Y, Roch M. [Typical synapses between neurons and oligodendroglial cells in the human cerebral cortex]. C R Acad Hebd Seances Acad Sci D 1976; 283:1747-9. [PMID: 828548] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
The significance of these synapses is considered as part of a dynamic pattern of relations between neurons and neuroglia: transmission of a rapid message leading to an adjustment of the oligodendroglial cells to the functional changes of the neurons of which they are satellites.
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Tusques J, George Y, Roch M. [Ultrastructural variations of synapses in the normal human cerebral cortex]. Bull Assoc Anat (Nancy) 1976; 60:231-41. [PMID: 1016748] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
The numerous synapses in the normal human brain cortex display various aspects. The authors have also observed some electronic type synapses which are more numerous around the pericaryons. The cortical synapses are classed according to their synaptic vesicle richness : synapses with very few vesicles, synapses very rich in vesicles and synapses with a middling vesicular density. With the help of observations on these aspects and on variations of the synaptic cleft and that of the postsynaptic density, the authors advance an hypothesis on synaptic plasticity, the synaptic structures going from a simple intercellular contact (probably non functional) to a completly formed synapse and vice versa.
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George Y, Soliman MM. A standard diet for the nutrition of the laboratory rats and mice. Egypt Dent J 1975; 21:1-6. [PMID: 1073319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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Soliaman MM, Atia MA, George Y. Histochemical investigation about the influence of the thyroid on the major salivary glands in rats. Egypt Dent J 1975; 21:13-24. [PMID: 1073681] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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Tusques J, Couderc M, George Y. [Microglia and pericytes of the human cerebral cortex]. Bull Assoc Anat (Nancy) 1975; 59:535-44. [PMID: 1203561] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Biopsies of normal human cerebral cortex were fixed by aldehydes and their ultrastructure was studied. Two main types of vessels are observed, capillaries and metarterioles, and around them two types of pericytes are described: a microgliocyte-like pericyte which is either surrounded by a nervous basal membrane, or laying outside this membrane; endothelial-like pericytes which are frequently observed inside the metarterioles perivascular space and contain many lysosomes. Endothelial-like pericytes have probably a metabolic function and microgliocyte-like pericytes are more involved in a role of mechanic regulation of the microcirculation. This hypothesis is supported by the observation of a microgliocyte interposed between two endothelial processes and protuding into the vascular lumen.
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