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Kadalayil L, Alam MZ, White CH, Ghantous A, Walton E, Gruzieva O, Merid SK, Kumar A, Roy RP, Solomon O, Huen K, Eskenazi B, Rzehak P, Grote V, Langhendries JP, Verduci E, Ferre N, Gruszfeld D, Gao L, Guan W, Zeng X, Schisterman EF, Dou JF, Bakulski KM, Feinberg JI, Soomro MH, Pesce G, Baiz N, Isaevska E, Plusquin M, Vafeiadi M, Roumeliotaki T, Langie SAS, Standaert A, Allard C, Perron P, Bouchard L, van Meel ER, Felix JF, Jaddoe VWV, Yousefi PD, Ramlau-Hansen CH, Relton CL, Tobi EW, Starling AP, Yang IV, Llambrich M, Santorelli G, Lepeule J, Salas LA, Bustamante M, Ewart SL, Zhang H, Karmaus W, Röder S, Zenclussen AC, Jin J, Nystad W, Page CM, Magnus M, Jima DD, Hoyo C, Maguire RL, Kvist T, Czamara D, Räikkönen K, Gong T, Ullemar V, Rifas-Shiman SL, Oken E, Almqvist C, Karlsson R, Lahti J, Murphy SK, Håberg SE, London S, Herberth G, Arshad H, Sunyer J, Grazuleviciene R, Dabelea D, Steegers-Theunissen RPM, Nohr EA, Sørensen TIA, Duijts L, Hivert MF, Nelen V, Popovic M, Kogevinas M, Nawrot TS, Herceg Z, Annesi-Maesano I, Fallin MD, Yeung E, Breton CV, Koletzko B, Holland N, Wiemels JL, Melén E, Sharp GC, Silver MJ, Rezwan FI, Holloway JW. Analysis of DNA methylation at birth and in childhood reveals changes associated with season of birth and latitude. Clin Epigenetics 2023;15:148. [PMID: 37697338 PMCID: PMC10496224 DOI: 10.1186/s13148-023-01542-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Accepted: 07/27/2023] [Indexed: 09/13/2023] Open

Abstract

BACKGROUND

Seasonal variations in environmental exposures at birth or during gestation are associated with numerous adult traits and health outcomes later in life. Whether DNA methylation (DNAm) plays a role in the molecular mechanisms underlying the associations between birth season and lifelong phenotypes remains unclear.

METHODS

We carried out epigenome-wide meta-analyses within the Pregnancy And Childhood Epigenetic Consortium to identify associations of DNAm with birth season, both at differentially methylated probes (DMPs) and regions (DMRs). Associations were examined at two time points: at birth (21 cohorts, N = 9358) and in children aged 1-11 years (12 cohorts, N = 3610). We conducted meta-analyses to assess the impact of latitude on birth season-specific associations at both time points.

RESULTS

We identified associations between birth season and DNAm (False Discovery Rate-adjusted p values < 0.05) at two CpGs at birth (winter-born) and four in the childhood (summer-born) analyses when compared to children born in autumn. Furthermore, we identified twenty-six differentially methylated regions (DMR) at birth (winter-born: 8, spring-born: 15, summer-born: 3) and thirty-two in childhood (winter-born: 12, spring and summer: 10 each) meta-analyses with few overlapping DMRs between the birth seasons or the two time points. The DMRs were associated with genes of known functions in tumorigenesis, psychiatric/neurological disorders, inflammation, or immunity, amongst others. Latitude-stratified meta-analyses [higher (≥ 50°N), lower (< 50°N, northern hemisphere only)] revealed differences in associations between birth season and DNAm by birth latitude. DMR analysis implicated genes with previously reported links to schizophrenia (LAX1), skin disorders (PSORS1C, LTB4R), and airway inflammation including asthma (LTB4R), present only at birth in the higher latitudes (≥ 50°N).

CONCLUSIONS

In this large epigenome-wide meta-analysis study, we provide evidence for (i) associations between DNAm and season of birth that are unique for the seasons of the year (temporal effect) and (ii) latitude-dependent variations in the seasonal associations (spatial effect). DNAm could play a role in the molecular mechanisms underlying the effect of birth season on adult health outcomes.

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Affiliation(s)

Latha Kadalayil Clinical and Experimental Sciences, Faculty of Medicine, University of Southampton, Southampton, UK Human Development and Health, Faculty of Medicine, University of Southampton, Southampton General Hospital, Southampton, UK
Md Zahangir Alam Human Development and Health, Faculty of Medicine, University of Southampton, Southampton General Hospital, Southampton, UK Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka, Bangladesh
Cory Haley White Merck Exploratory Science Center in Cambridge MA, Merck Research Laboratories, Cambridge, MA, 02141, USA
Akram Ghantous Epigenomics and Mechanisms Branch, International Agency for Research on Cancer, Lyon, France
Esther Walton Department of Psychology, University of Bath, Bath, UK
Olena Gruzieva Institute of Environmental Medicine, Karolinska Institutet, Stockholm, Sweden Centre for Occupational and Environmental Medicine, Region Stockholm, Sweden
Simon Kebede Merid Centre for Occupational and Environmental Medicine, Region Stockholm, Sweden
Ashish Kumar Department of Clinical Science and Education, Södersjukhuset, Karolinska Institutet, Stockholm, Sweden
Ritu P Roy Helen Diller Family Comprehensive Cancer Center University of California, San Francisco, CA, 94143, USA Computational Biology and Informatics Core, University of California, San Francisco, CA, 94143, USA
Olivia Solomon Children's Environmental Health Laboratory, University of California, Berkeley, CA, USA
Karen Huen Children's Environmental Health Laboratory, University of California, Berkeley, CA, USA
Brenda Eskenazi Children's Environmental Health Laboratory, University of California, Berkeley, CA, USA
Peter Rzehak Division of Metabolic and Nutritional Medicine, Dr. von Hauner Children's Hospital, Ludwig-Maximilians Universität München (LMU), Munich, Germany
Veit Grote Division of Metabolic and Nutritional Medicine, Dr. von Hauner Children's Hospital, Ludwig-Maximilians Universität München (LMU), Munich, Germany
Jean-Paul Langhendries CHC, St Vincent, Liège-Rocourt, Belgium
Elvira Verduci Department of Pediatrics, Vittore Buzzi Children Hospital, University of Milan, Milan, Italy
Natalia Ferre Pediatric Nutrition and Human Development Research Unit, Universitat Rovira i Virgili, IISPV, Reus, Spain
Darek Gruszfeld Neonatal Department, Children's Memorial Health Institute, Warsaw, Poland
Lu Gao Department of Preventive Medicine, University of Southern California, Los Angeles, CA, USA
Weihua Guan Division of Biostatistics, School of Public Health, University of Minnesota, A460 Mayo Building, MMC 303, 420 Delaware St. SE, Minneapolis, MN, 55455, USA
Xuehuo Zeng Glotech, Inc., Rockville, MD, USA
Enrique F Schisterman Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, 423 Guardian Drive, Philadelphia, PA, 19104, USA
John F Dou Department of Epidemiology, School of Public Health, University of Michigan, Ann Arbor, USA
Kelly M Bakulski Department of Epidemiology, School of Public Health, University of Michigan, Ann Arbor, USA
Jason I Feinberg Wendy Klag Center for Autism and Developmental Disabilities Johns Hopkins University, Baltimore, MD, USA Department of Mental Health, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, USA
Munawar Hussain Soomro Sorbonne Université and INSERM, Epidemiology of Allergic and Respiratory Diseases Department, Pierre Louis Institute of Epidemiology and Public Health (IPLESP UMRS 1136), Saint-Antoine Medical School, Paris Cedex 12, France Department of Community Medicine and Public Health, SMBB Medical University, Larkana, Pakistan
Giancarlo Pesce Sorbonne Université and INSERM, Epidemiology of Allergic and Respiratory Diseases Department, Pierre Louis Institute of Epidemiology and Public Health (IPLESP UMRS 1136), Saint-Antoine Medical School, Paris Cedex 12, France
Nour Baiz Institut Desbrest de Santé Publique (IDESP), INSERM and Montpellier University, Montpellier, France
Elena Isaevska Cancer Epidemiology Unit, Department of Medical Sciences, University of Turin, CPO Piemonte, Italy
Michelle Plusquin Center for Environmental Sciences, University of Hasselt, 3590, Diepenbeek, Belgium
Marina Vafeiadi Department of Social Medicine, School of Medicine, University of Crete, Heraklion, Greece
Theano Roumeliotaki Department of Social Medicine, School of Medicine, University of Crete, Heraklion, Greece
Sabine A S Langie Unit Health, Flemish Institute for Technological Research (VITO), Mol, Belgium Faculty of Sciences, Hasselt University, Diepenbeek, Belgium Department of Pharmacology and Toxicology, School for Nutrition and Translational Research in Metabolism (NUTRIM), Maastricht University, Limburg, The Netherlands
Arnout Standaert Unit Health, Flemish Institute for Technological Research (VITO), Mol, Belgium
Catherine Allard Centre de Recherche du Centre Hospitalier de l'Universite de Sherbrooke, Sherbrooke, Canada
Patrice Perron Department of Medicine, Universite de Sherbrooke, Sherbrooke, Canada
Luigi Bouchard Department of Biochemistry and Functional Genomics, Universite de Sherbrooke, Sherbrooke, Canada Clinical Department of Laboratory Medicine, Centre intégré universitaire de santé et de services sociaux (CIUSSS) du Saguenay-Lac-Saint-Jean - Hôpital de Chicoutimi, Chicoutimi, Canada
Evelien R van Meel The Generation R Study Group, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands Division of Respiratory Medicine and Allergology, Department of Pediatrics, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands
Janine F Felix The Generation R Study Group, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands Department of Pediatrics, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands
Vincent W V Jaddoe The Generation R Study Group, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands Department of Pediatrics, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands
Paul D Yousefi Medical Research Council Integrative Epidemiology Unit, University of Bristol, Bristol, UK Population Health Science, Bristol Medical School, University of Bristol, Bristol, UK
Cecilia H Ramlau-Hansen Department of Public Health, Aarhus University, Aarhus, Denmark
Caroline L Relton Medical Research Council Integrative Epidemiology Unit, University of Bristol, Bristol, UK Population Health Science, Bristol Medical School, University of Bristol, Bristol, UK
Elmar W Tobi Periconceptional Epidemiology, Department of Obstetrics and Gynecology, Erasmus MC, University Medical Center, PO Box 2040, 3000 CA, Rotterdam, The Netherlands
Anne P Starling Life Course Epidemiology of Adiposity and Diabetes (LEAD) Center, University of Colorado Anschutz Medical Campus, Aurora, CO, USA Department of Epidemiology, Colorado School of Public Health, University of Colorado Anschutz Medical Campus, Aurora, CO, USA Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
Ivana V Yang Department of Epidemiology, Colorado School of Public Health, University of Colorado Anschutz Medical Campus, Aurora, CO, USA Division of Biomedical Informatics and Personalized Medicine, Department of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA Center for Genes, Environment and Health, National Jewish Health, Denver, CO, USA
Maria Llambrich Institute for Global Health (ISGlobal), Barcelona, Spain Universitat Pompeu Fabra (UPF), Barcelona, Spain CIBER Epidemiología y Salud Pública (CIBERESP), Madrid, Spain
Gillian Santorelli Bradford Institute for Health Research, Bradford, UK
Johanna Lepeule Institute for Advanced Biosciences, University Grenoble-Alpes, INSERM, CNRS, Grenoble, France
Lucas A Salas Institute for Global Health (ISGlobal), Barcelona, Spain Department of Epidemiology, Geisel School of Medicine, Dartmouth College, Lebanon, NH, USA Center for Molecular Epidemiology, Geisel School of Medicine, Dartmouth College, Lebanon, NH, USA Children's Environmental Health and Disease Prevention Research Center at Dartmouth, Lebanon, NH, USA
Mariona Bustamante Institute for Global Health (ISGlobal), Barcelona, Spain Universitat Pompeu Fabra (UPF), Barcelona, Spain CIBER Epidemiología y Salud Pública (CIBERESP), Madrid, Spain
Susan L Ewart Department of Large Animal Clinical Sciences, College of Veterinary Medicine, Michigan State University, East Lansing, MI, USA
Hongmei Zhang Division of Epidemiology, Biostatistics, and Environmental Health, School of Public Health, University of Memphis, Memphis, USA
Wilfried Karmaus Division of Epidemiology, Biostatistics, and Environmental Health, School of Public Health, University of Memphis, Memphis, USA
Stefan Röder Department of Environmental Immunology, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany
Ana Claudia Zenclussen Department of Environmental Immunology, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany
Jianping Jin 2530 Meridian Pkwy, Suite 200, Durham, NC 27713, USA
Wenche Nystad Department of Chronic Diseases and Ageing, Norwegian Institute of Public Health, Oslo, Norway
Christian M Page Centre for Fertility and Health, Norwegian Institute of Public Health, Oslo, Norway Section for Statistics and Data Science, Department of Mathematics, Faculty of Mathematics and Natural Sciences, University of Oslo, Oslo, Norway
Maria Magnus Centre for Fertility and Health, Norwegian Institute of Public Health, Oslo, Norway
Dereje D Jima Center for Human Health and the Environment, North Carolina State University, Raleigh, NC, USA Bioinformatics Research Center, North Carolina State University, Raleigh, NC, USA
Cathrine Hoyo Center for Human Health and the Environment, North Carolina State University, Raleigh, NC, USA Department of Biological Sciences, North Carolina State University, Raleigh, NC, USA
Rachel L Maguire Department of Biological Sciences, North Carolina State University, Raleigh, NC, USA Department of Obstetrics and Gynaecology, Duke University Medical Center, Durham, NC, USA
Tuomas Kvist Department of Psychology and Logopedics, University of Helsinki, Helsinki, Finland
Darina Czamara Department of Translational Research in Psychiatry, Max-Planck-Institute of Psychiatry, 80804, Munich, Germany
Katri Räikkönen Department of Psychology and Logopedics, University of Helsinki, Helsinki, Finland
Tong Gong Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden
Vilhelmina Ullemar Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden
Sheryl L Rifas-Shiman Department of Population Medicine, Harvard Medical School, Harvard Pilgrim Health Care Institute, Boston, USA
Emily Oken Department of Population Medicine, Harvard Medical School, Harvard Pilgrim Health Care Institute, Boston, USA
Catarina Almqvist Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden Pediatric Allergy and Pulmonology Unit at Astrid Lindgren Children's Hospital, Karolinska University Hospital, Stockholm, Sweden
Robert Karlsson Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden
Jari Lahti Department of Psychology and Logopedics, University of Helsinki, Helsinki, Finland
Susan K Murphy Department of Obstetrics and Gynaecology, Duke University Medical Center, Durham, NC, USA
Siri E Håberg Centre for Fertility and Health, Norwegian Institute of Public Health, Oslo, Norway
Stephanie London Department of Health and Human Services, National Institute of Environmental Health Sciences, National Institutes of Health, RTP, NC, 27709, USA
Gunda Herberth Department of Environmental Immunology, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany
Hasan Arshad Clinical and Experimental Sciences, Faculty of Medicine, University of Southampton, Southampton, UK David Hide Asthma and Allergy Research Centre, Isle of Wight, UK NIHR Southampton Biomedical Research Centre, Southampton General Hospital, Southampton, UK
Jordi Sunyer Institute for Global Health (ISGlobal), Barcelona, Spain Universitat Pompeu Fabra (UPF), Barcelona, Spain CIBER Epidemiología y Salud Pública (CIBERESP), Madrid, Spain
Regina Grazuleviciene Department of Environmental Science, Vytautas Magnus University, 44248, Kaunas, Lithuania
Dana Dabelea Life Course Epidemiology of Adiposity and Diabetes (LEAD) Center, University of Colorado Anschutz Medical Campus, Aurora, CO, USA Department of Epidemiology, Colorado School of Public Health, University of Colorado Anschutz Medical Campus, Aurora, CO, USA Department of Pediatrics, School of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA
Régine P M Steegers-Theunissen Periconceptional Epidemiology, Department of Obstetrics and Gynecology, Erasmus MC, University Medical Center, PO Box 2040, 3000 CA, Rotterdam, The Netherlands
Ellen A Nohr Department of Clinical Research, Odense Universitetshospital, Odense, Denmark
Thorkild I A Sørensen Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark Department Public Health, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
Liesbeth Duijts The Generation R Study Group, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands Division of Respiratory Medicine and Allergology, Department of Pediatrics, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands Division of Neonatology, Department of Pediatrics, Erasmus MC, University Medical Center Rotterdam, Rotterdam, The Netherlands
Marie-France Hivert Department of Population Medicine, Harvard Medical School, Harvard Pilgrim Health Care Institute, Boston, USA Diabetes Unit, Massachusetts General Hospital, Boston, MA, USA
Vera Nelen Provincial Institute for Hygiene, Antwerp, Belgium
Maja Popovic Cancer Epidemiology Unit, Department of Medical Sciences, University of Turin, CPO Piemonte, Italy
Manolis Kogevinas Institute for Global Health (ISGlobal), Barcelona, Spain
Tim S Nawrot Center for Environmental Sciences, University of Hasselt, 3590, Diepenbeek, Belgium Department of Public Health and Primary Care, Leuven University, Louvain, Belgium
Zdenko Herceg Epigenomics and Mechanisms Branch, International Agency for Research on Cancer, Lyon, France
Isabella Annesi-Maesano Institut Desbrest de Santé Publique (IDESP), INSERM and Montpellier University, Montpellier, France
M Daniele Fallin Wendy Klag Center for Autism and Developmental Disabilities Johns Hopkins University, Baltimore, MD, USA Department of Mental Health, Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, USA
Edwina Yeung Epidemiology Branch, Division of Population Health Research, Division of Intramural Research, Eunice Kennedy Shriver National Institute of Child Health and Human Development, 6710B Rockledge Dr, MSC 7004, Bethesda, MD, USA
Carrie V Breton Department of Preventive Medicine, University of Southern California, Los Angeles, CA, USA
Berthold Koletzko Division of Metabolic and Nutritional Medicine, Dr. von Hauner Children's Hospital, Ludwig-Maximilians Universität München (LMU), Munich, Germany
Nina Holland Children's Environmental Health Laboratory, CERCH, Berkeley Public Health, University of California, 2121 Berkeley Way #5216, Berkeley, CA, 94720, USA
Joseph L Wiemels Center for Genetic Epidemiology, University of Southern California, Los Angeles, CA, 90033, USA Norris Comprehensive Cancer Center, University of Southern California, Los Angeles, CA, 90033, USA
Erik Melén Department of Clinical Science and Education, Södersjukhuset, Karolinska Institutet, Stockholm, Sweden Sachs' Children and Youth Hospital, Södersjukhuset, Stockholm, Sweden
Gemma C Sharp Medical Research Council Integrative Epidemiology Unit, University of Bristol, Bristol, UK School of Psychology, University of Exeter, Exeter, UK
Matt J Silver Medical Research Council Unit, The Gambia at the London School of Hygiene and Tropical Medicine, Fajara, The Gambia Medical Research Council Unit, The Gambia at the London School of Hygiene and Tropical Medicine, London, UK
Faisal I Rezwan Human Development and Health, Faculty of Medicine, University of Southampton, Southampton General Hospital, Southampton, UK Department of Computer Science, Aberystwyth University, Aberystwyth, Ceredigion, UK
John W Holloway Human Development and Health, Faculty of Medicine, University of Southampton, Southampton General Hospital, Southampton, UK. NIHR Southampton Biomedical Research Centre, Southampton General Hospital, Southampton, UK.

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