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Sellamuthu G, Naseer A, Hradecký J, Chakraborty A, Synek J, Modlinger R, Roy A. Gene expression plasticity facilitates different host feeding in Ips sexdentatus (Coleoptera: Curculionidae: Scolytinae). Insect Biochem Mol Biol 2024; 165:104061. [PMID: 38151136 DOI: 10.1016/j.ibmb.2023.104061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Revised: 11/30/2023] [Accepted: 12/15/2023] [Indexed: 12/29/2023]
Abstract
Host shift is ecologically advantageous and a crucial driver for herbivore insect speciation. Insects on the non-native host obtain enemy-free space and confront reduced competition, but they must adapt to survive. Such signatures of adaptations can often be detected at the gene expression level. It is astonishing how bark beetles cope with distinct chemical environments while feeding on various conifers. Hence, we aim to disentangle the six-toothed bark beetle (Ips sexdentatus) response against two different conifer defences upon host shift (Scots pine to Norway spruce). We conducted bioassay and metabolomic analysis followed by RNA-seq experiments to comprehend the beetle's ability to surpass two different terpene-based conifer defence systems. Beetle growth rate and fecundity were increased when reared exclusively on spruce logs (alternative host) compared to pine logs (native host). Comparative gene expression analysis identified differentially expressed genes (DEGs) related to digestion, detoxification, transporter activity, growth, signalling, and stress response in the spruce-feeding beetle gut. Transporter genes were highly abundant during spruce feeding, suggesting they could play a role in pumping a wide variety of endogenous and xenobiotic compounds or allelochemicals out. Trehalose transporter (TRET) is also up-regulated in the spruce-fed beetle gut to maintain homeostasis and stress tolerance. RT-qPCR and enzymatic assays further corroborated some of our findings. Taken together, the transcriptional plasticity of key physiological genes plays a crucial role after the host shift and provides vital clues for the adaptive potential of bark beetles on different conifer hosts.
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Affiliation(s)
- Gothandapani Sellamuthu
- Czech University of Life Sciences Prague, Forest Molecular Entomology Lab, Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic; Czech University of Life Sciences Prague, Excellent Team for Mitigation (ETM), Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic
| | - Aisha Naseer
- Czech University of Life Sciences Prague, Forest Molecular Entomology Lab, Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic; Czech University of Life Sciences Prague, Excellent Team for Mitigation (ETM), Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic
| | - Jaromír Hradecký
- Czech University of Life Sciences Prague, Excellent Team for Mitigation (ETM), Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic
| | - Amrita Chakraborty
- Czech University of Life Sciences Prague, Forest Molecular Entomology Lab, Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic; Czech University of Life Sciences Prague, Forest Microbiome Team, Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic
| | - Jiří Synek
- Czech University of Life Sciences Prague, Excellent Team for Mitigation (ETM), Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic
| | - Roman Modlinger
- Czech University of Life Sciences Prague, Excellent Team for Mitigation (ETM), Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic
| | - Amit Roy
- Czech University of Life Sciences Prague, Forest Molecular Entomology Lab, Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic; Czech University of Life Sciences Prague, Excellent Team for Mitigation (ETM), Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic; Czech University of Life Sciences Prague, Forest Microbiome Team, Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic.
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Tariq A, Jabeen Z, Farrakh S, Noreen K, Arshad W, Ahmed H, Haider W. Exploring the genetic potential of Pakistani soybean cultivars through RNA-seq based transcriptome analysis. Mol Biol Rep 2022; 49:2889-2897. [PMID: 35088376 DOI: 10.1007/s11033-021-07104-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Accepted: 12/17/2021] [Indexed: 12/13/2022]
Abstract
BACKGROUND Soybean is largely grown and considered among the top oilseed crops. Three Pakistani cultivars, NARC-II (N), Swat-84 (S), and Rawal-I (R) were employed for RNA-Seq based transcriptome analysis to explore their genetic potential and performance in our local environment. METHODS AND RESULTS We grew the plants in glass house at same conditions and sampled leaves for RNA-Seq analysis in triplicate for each variety. We retrieved 2225 differentially expressed genes (DEGs) between S vs R, 2591 DEGs between S vs N, and 1221 DEGs between R vs N cultvars. These genes consist of transcription factors representing Basic Helix-loop Helix, myeloblastosis, ethylene response factors, and WRKY amino acid motif (WRKY) type major families that were up-regulated. KEGG pathway analysis revealed that MAPK, plant hormone signal transduction, and Phenylpropanoid biosynthesis pathways were the most dominant pathways involved in plant defense and growth. Comparative analysis showed that Swat-84 (S) cultivar had better gene expression among these varieties having higher number of DEGs, where mostly genes related to important phenotypic traits were up regulated. CONCLUSIONS This is a pilot study to investigate and functionally characterise the DEG involved in the stress response in the cultivars studied.
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Affiliation(s)
- Arslan Tariq
- Department of Biosciences, COMSATS University Islamabad, Islamabad, Pakistan
| | - Zahra Jabeen
- Department of Biosciences, COMSATS University Islamabad, Islamabad, Pakistan
| | - Sumaira Farrakh
- Department of Biosciences, COMSATS University Islamabad, Islamabad, Pakistan
| | - Kiran Noreen
- Department of Biosciences, COMSATS University Islamabad, Islamabad, Pakistan
| | - Waleed Arshad
- Department of Biosciences, COMSATS University Islamabad, Islamabad, Pakistan
| | - Haroon Ahmed
- Department of Biosciences, COMSATS University Islamabad, Islamabad, Pakistan
| | - Waseem Haider
- Department of Biosciences, COMSATS University Islamabad, Islamabad, Pakistan.
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