The Eurasian shrew and vole tick Ixodes trianguliceps: geographical distribution, climate preference, and pathogens detected

The Eurasian shrew and vole tick Ixodes trianguliceps Birula lives in the nests and burrows of its small mammalian hosts and is-along with larvae and nymphs of Ixodes ricinus or Ixodes persulcatus-one of the most commonly collected tick species from these hosts in its Eurasian range. Ixodes trianguliceps is a proven vector of Babesia microti. In this study, up-to-date maps depicting the geographical distribution and the climate preference of I. trianguliceps are presented. A dataset was compiled, resulting in 1161 georeferenced locations in Eurasia. This data set covers the entire range of I. trianguliceps for the first time. The distribution area between 8[Formula: see text] W-105[Formula: see text] E and 40-69[Formula: see text] N extends from Northern Spain to Western Siberia. To investigate the climate adaptation of I. trianguliceps, the georeferenced locations were superimposed on a high-resolution map of the Köppen-Geiger climate classification. The Köppen profile for I. trianguliceps, i.e., a frequency distribution of the tick occurrence under different climates, shows two peaks related to the following climates: warm temperate with precipitation all year round (Cfb), and boreal with warm or cold summers and precipitation all year round (Dfb, Dfc). Almost 97% of all known I. trianguliceps locations are related to these climates. Thus, I. trianguliceps prefers climates with warm or cold summers without dry periods. Cold winters do not limit the distribution of this nidicolous tick species, which has been recorded in the European Alps and the Caucasus Mountains up to altitudes of 2400 m. Conversely, I. trianguliceps does not occur in the Mediterranean area with its hot and dry summers.

Unconventional water resources: Global opportunities and challenges

Water is of central importance for reaching the Sustainable Development Goals (SDGs) of the United Nations. With predictions of dire global water scarcity, attention is turning to resources that are considered to be unconventional, and hence called Unconventional Water Resources (UWRs). These are considered as supplementary water resources that need specialized processes to be used as water supply. The literature encompasses a vast number of studies on various UWRs and their usefulness in certain environmental and/or socio-economic contexts. However, a recent, all-encompassing article that brings the collective knowledge on UWRs together is missing. Considering the increasing importance of UWRs in the global push for water security, the current study intends to offer a nuanced understanding of the existing research on UWRs by summarizing the key concepts in the literature. The number of articles published on UWRs have increased significantly over time, particularly in the past ten years. And while most publications were authored from researchers based in the USA or China, other countries such as India, Iran, Australia, and Spain have also featured prominently. Here, twelve general types of UWRs were used to assess their global distribution, showing that climatic conditions are the main driver for the application of certain UWRs. For example, the use of iceberg water obviously necessitates access to icebergs, which are taken largely from arctic regions. Overall, the literature review demonstrated that, even though UWRs provide promising possibilities for overcoming water scarcity, current knowledge is patchy and points towards UWRs being, for the most part, limited in scope and applicability due to geographic, climatic, economic, and political constraints. Future studies focusing on improved documentation and demonstration of the quantitative and socio-economic potential of various UWRs could help in strengthening the case for some, if not all, UWRs as avenues for the sustainable provision of water.

A nationwide survey of the tabanid fauna of Cameroon

Background

Tabanids are a neglected group of haematophagous dipterans despite containing 4434 species, regrouped in > 144 genera. They are mechanical vectors of important pathogens, including viruses, bacteria and protozoa of humans and domesticated and wild animals. As it is > 50 years since the publication of a preliminary nationwide record of the tabanids of Cameroon identified 84 species, updated information is needed. The aim of this study was to provide current data on the species composition, abundance and distribution of tabanids in the five main agro-ecological zones (AEZs) of Cameroon.

Methods

From 2015 to 2017, a systematic entomological study using Nzi, Vavoua, Biconical and Sevi traps (n = 106) was conducted in 604 trapping points over 11,448 trap-days in the five main AEZs of Cameroon.

Results

A total of 25,280 tabanids belonging to 25 species were collected, including eight species not previously documented in Cameroon, namely Tabanus latipes (1 female), Tabanus ricardae (1 female), Tabanus fasciatus (32 females and 6 males), Haematopota pluvialis (18 females), Haematopota decora (19 females and 3 males), Haematopota nigripennis (18 females), Chrysops distinctipennis (47 females and 5 males) and Ancala fasciata (34 females and 7 males). The distribution maps of the newly identified tabanids differed between AEZs, with most tabanids collected from the Guinean savanna. The highest apparent density of tabanids was recorded in the Sudan Savanna region, and the mean apparent densities of species with sites was statistically significantly different (Student t-test: 2.519, df = 24, P = 0.019). The highest species diversity was found in the rainforest.

Conclusions

This study increased the list of tabanids recorded in Cameroon from 84 species in the preliminary record to 92 species, with most of the newly identified species occurring in the Guinea Savanna AEZ. The high diversity and abundance of tabanids in the livestock/wildlife interface areas of the rain forests and Sudan Savanna AEZs, respectively, suggest risk of mechanical transmission of pathogens. Investigations of the microbiota of tabanids in the different AEZs to define their role as disease vectors are proposed.

Graphical abstract

Supplementary Information

The online version contains supplementary material available at 10.1186/s13071-021-04894-0.

Near-infrared hyperspectral imaging for detection and visualization of offal adulteration in ground pork

Hyperspectral imaging (HSI) technique was investigated to explore a feasible protocol for detecting the potential offal (lung) adulteration in ground pork. Tested samples (176 adulterated and 2 controls) were first prepared with adulterant of ground lung in range of 0%-100% (w/w) at 10% intervals. After hyperspectral images were acquired and calibrated in reflectance mode (400-1000 nm), full spectra were extracted from identified regions of interests (ROIs) and then transformed into absorbance and Kubelka-Munck spectral units, respectively. Partial least squares regression (PLSR) models based on full spectra showed that raw reflectance spectra with no preprocessings performed best with coefficient of determination (R_p²) of 0.98, root mean square error (RMSEP) of 4.25%, and ratio performance deviation (RPD) of 7.53 in prediction set. To reduce the high dimensionality of spectra, data was further explored using principal component loadings, two-dimensional correlation spectroscopy (2D-COS), and regression coefficients (RC), respectively. The optimal performance of established simplified PLSR model were acquired using eleven featured wavelengths selected by PC loadings with R_p² of 0.98, RMSEP of 4.47% and RPD of 7.16. Finally, the limit of detection (LOD) was calculated to be a satisfactory 7.58%, and readily discernible visualization procedure using preferred simplified PLSR model yielded satisfactory spatial distribution of adulteration situation. Control samples with known distribution were also visualized to successfully prove the validity. Consequently, this research offers an alternative assay for visually and rapidly detecting offal of lung adulteration in ground pork.

Non-destructive analysis of germination percentage, germination energy and simple vigour index on wheat seeds during storage by Vis/NIR and SWIR hyperspectral imaging

Two hyperspectral imaging (HSI) systems, visible/near infrared (Vis/NIR, 304-1082 nm) and short wave infrared (SWIR, 930-2548 nm), were used for the first time to comprehensively predict the changes in quality of wheat seeds based on three vigour parameters: germination percentage (GP, reflecting the number of germinated seedling), germination energy (GE, reflecting the speed and uniformity of seedling emergence), and simple vigour index (SVI, reflecting germination percentage and seedling weight). Each sample contained a small number of wheat seeds, which were obtained by high temperature and humidity-accelerated aging (0, 2, and 3 days) to simulate storage. The spectra of these samples were collected using HSI systems. After collection, each seed sample underwent a standard germination test to determine their GP, GE, and SVI. Then, several pretreatment methods and the partial least-squares regression algorithm (PLS-R) were used to establish quantitative models. The models for the Vis/NIR region obtained excellent performance, and most effective wavelengths (EWs) were selected in the Vis/NIR region by the successive projections algorithm (SPA) and regression coefficients (RC). Subsequently, PLS-R-RC models using selected wavebands (sixteen wavebands for GP, 14 wavebands for GE, and 16 wavebands for SVI) exhibited similar performance to the PLS-R models based on the full wavebands. The best R² results obtained in the simplified models' prediction sets were 0.921, 0.907, and 0.886, with RMSE values of 4.113%, 5.137%, and 0.024, for GP, GE, and SVI, respectively. Distribution maps of GP, GE, and SVI were produced by applying these simplified PLS models. By interpreting the EWs and building prediction models, soluble protein and sugar content were demonstrated to have a relationship with spectral information. In summary, the present results lay a foundation towards the development of a significantly simpler, more comprehensive, and non-destructive hyperspectral-based sorting system for determining the vigour of wheat seeds.

Native trees of Mexico: diversity, distribution, uses and conservation

Background

Mexico is one of the most floristically rich countries in the world. Despite significant contributions made on the understanding of its unique flora, the knowledge on its diversity, geographic distribution and human uses, is still largely fragmented. Unfortunately, deforestation is heavily impacting this country and native tree species are under threat. The loss of trees has a direct impact on vital ecosystem services, affecting the natural capital of Mexico and people’s livelihoods. Given the importance of trees in Mexico for many aspects of human well-being, it is critical to have a more complete understanding of their diversity, distribution, traditional uses and conservation status. We aimed to produce the most comprehensive database and catalogue on native trees of Mexico by filling those gaps, to support their in situ and ex situ conservation, promote their sustainable use, and inform reforestation and livelihoods programmes.

Methods

A database with all the tree species reported for Mexico was prepared by compiling information from herbaria and reviewing the available floras. Species names were reconciled and various specialised sources were used to extract additional species information, i.e. endemic status, threat status, availability in seed collections, reports on plant uses and conservation actions currently in place. With this information, a comprehensive catalogue of native trees from Mexico was redacted. Available georeferenced records were used to map each species distribution and perform spatial analyses to identify gaps of information and priority areas for their conservation and exploration.

Results

Mexico has at least 2,885 native tree species, belonging to 612 genera and 128 families. Fabaceae is the most represented family and Quercus the most represented genus. Approximately 44% of tree species are endemic to the country. The southern part of the country showed the highest values of species richness. Six hundred and seventy-four species have at least one documented human use. In terms of conservation assessment, ca. 33% of species have been assessed by either the IUCN Red List (919) or the National protection catalogue “NORMA Oficial Mexicana NOM-059” (29) or both (45). Additionally, 98 species have been included in the CITES listing for protection. In terms of existing conservation efforts, 19% of species have ex situ protection in seed banks, while protected areas overlap with all the identified peaks of species richness, except for those in the states of Veracruz and Chiapas. This work constitutes a key milestone for the knowledge, management, and conservation of the Mexican native trees. The two areas with high density of tree species identified in Veracruz and Chiapas represent two priority areas for tree conservation in Mexico, where integrated in situ and ex situ conservation efforts should be focused.

Varietal dataset of nutritionally important Lablab purpureus (L.) Sweet from Eastern Uttar Pradesh, India

Legumes are one of the important crops for food and nutritional security. According to the International Treaty on Plant Genetic Resources for Food and Agriculture, the collection and documentation of promising germplasms are essential for creating the global database and also for facilitating the global exchange for crop improvement and further exploitation. Presented here are varietal dataset of an agriculturally important legume, Lablab purpureus (L.) Sweet, collected from eastern Uttar Pradesh of North India. Extensive field surveys were conducted for studying the occurrence and distribution of L. purpureus in six districts of eastern Uttar Pradesh (Ballia, Ghazipur, Jaunpur, Mirzapur, Sonebhadra and Varanasi) and germplasms of promising varieties were collected, and cultivated for further characterization. Dataset provides the morphological traits such as variation in stem colour, leaf size, flower colour, pod colour, pod size, seed size, seed weight etc. of fourteen different varieties of L. purpureus grown in the field gene bank maintained by authors at Rajgarh block of Mirzapur district, eastern Uttar Pradesh, India. Additionally, national and global distribution maps of L. purpureus was prepared using ArcGIS platform.

Distribution and diversity patterns of herpetofauna in the Pantabangan-Carranglan Watershed, Nueva Ecija, Caraballo Mountain Range, Philippines

The recent extensive survey conducted in the Pantabangan-Carranglan Watershed, located in the Caraballo Mountain Range during the rainy season (October to November) resulted in the recording of fifty-nine (59) species of amphibians and reptiles (17 frogs, 14 skinks, 3 agamids, 6 gekkonid lizards, 2 varanids and 17 snakes). Out of 59 species, 42 species were Philippine endemics and 25 species are recorded only from the Luzon faunal region. Habitat analysis and mapping showed seven habitat types including lowland dipterocarp forest, grassland, lower montane forest, upper montane forest, pine forest, agricultural areas and riparian habitats. GIS-based distribution mapping showed that the number of individuals and species are high in forest and associated riparian habitats at mid-elevation (1,000-1,250 m a.s.l.). The distribution pattern in the area is influenced by similarity in microclimatic conditions, availability of resources and niches which species can utilise. Species diversity is centred in mid- to high elevation forest and riparian habitats and in less disturbed areas. Snake diversity is adversely affected by increased disturbance, making them good indicators of the health of an area. The abundance-based Jaccard's Similarity Index showed that connected habitats and elevation gradients have higher species similarity.

Diversity and Distribution of the Genus Friesea (Collembola: Neanuridae) in Romania with Description of Three New Species

Cristina Fiera and Wanda Maria Weiner (2016) The Romanian Neanuridae is still not well known. In this study we review the Friesea species present in Romania and describe three new species, namely Friesea posada sp. nov., F. mirceai sp. nov. and F. stampa sp. nov. Friesea posada sp. nov. is unique among six other species sharing some morphological characters (6 + 6 eyes, the presence of furca and three anal spines), but the new species has one clavate tenent hair on the tibiotarsi and a reduced mucro which is sometimes absent. The other two species, F. mirceai sp. nov. and F. stampa sp. nov., belong to the group of species characterized by the presence of 5 + 5 eyes, 3 + 3 chaetae on dens and 3 anal spines on Abd. VI. In F. stampa sp. nov. the chaetotaxy of abdominal tergum IV differs, and in F. mirceai sp. nov. the mucro is present and chaeta A1 on tibiotarsus is capitated and longer than the inner edge of claw. Four species are recorded for the first time in Romania: F. emucronata Stach, 1922, F. cf. tolosana Cassagnau, 1958, F. atypica Cassagnau, 1958 and F. aeolica Dallai, 1973. A total of thirteen species of Friesea is reported from Romania and the distribution maps are given for all.

A Geographic Information Systems (GIS)-based analysis of modern South African rodent distributions, habitat use, and environmental tolerances

Goals of this study were to: (1) develop distributional maps of modern rodent genera throughout the countries of South Africa, Lesotho, and Swaziland by georeferencing museum specimens; (2) assess habitat preferences for genera by cross-referencing locality position with South African vegetation; and (3) identify mean annual precipitation and temperature range where the genera are located. Conterminous South Africa including the countries of Lesotho and Swaziland Digital databases of rodent museum specimens housed in the Ditsong National Museum of Natural History, South Africa (DM), and the Division of Mammals, National Museum of Natural History, Smithsonian Institution, United States (NMNH), were acquired and then sorted into a subset of specimens with associated coordinate data. The coordinate data were then used to develop distributional maps for the rodent genera present within the study area. Percent habitat occupation and descriptive statistics for six climatic variables were then determined for each genus by cross-referencing locality positions with vegetation and climatic maps. This report presents a series of maps illustrating the distribution of 35 rodent genera based on 19,471 geo-referenced specimens obtained from two major collections. Inferred habitat use by taxon is provided for both locality and specimen percent occurrence at three hierarchical habitat levels: biome, bioregion, and vegetation unit. Descriptive statistics for six climatic variables are also provided for each genus based on locality and specimen percent incidence. As rodent faunas are commonly used in paleoenvironmental reconstructions, an accurate assessment of rodent environmental tolerance ranges is necessary before confidence can be placed in an actualistic model. While the data presented here represent only a subset of the modern geographic distributions for many of the taxa examined, a wide range of environmental regimes are observed, suggesting that more research is necessary in order to accurately reconstruct an environmental signature when these taxa are found in the fossil record.