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Zhao H, Hou Y, Wang J, Sun L, Gan J, Meng Y, Li Z, Li S, Fan Z, Wang Y, Fei B. The Global Atlas of Bamboo and Rattan ( GABR) Phase II: new resources for sustainable development. Gigascience 2022; 11:6780306. [PMID: 36310246 PMCID: PMC9618405 DOI: 10.1093/gigascience/giac113] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Revised: 10/16/2022] [Accepted: 10/24/2022] [Indexed: 11/04/2022] Open
Abstract
Bamboo, the fast-growing grass plant, and rattan, the spiky climbing palm, are both essential forest resources that have been closely linked with human lives, livelihoods and material culture since ancient times. To promote genetic and genomic research in bamboo and rattan, a comprehensive and coordinated international project, the Genome Atlas of Bamboo and Rattan (GABR), was launched in 2017. GABR achieved great success during Phase I (2017-2022). We will focus on investigating and protecting bamboo and rattan germplasm resources in Phase II ( 2022-2027). Here, we briefly review the achievements of Phase I and introduce the goals of Phase II.
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Affiliation(s)
- Hansheng Zhao
- Correspondence address. Hansheng Zhao, ICBR: International Center for Bamboo and Rattan, Futongdong Rd, WangJing, Chaoyang District, Beijing 100102, China. E-mail:
| | | | - Jian Wang
- Key Laboratory of National Forestry and Grassland Administration/Beijing for Bamboo & Rattan Science and Technology, International Centre for Bamboo and Rattan, Beijing 100102, China
| | - Lei Sun
- Key Laboratory of National Forestry and Grassland Administration/Beijing for Bamboo & Rattan Science and Technology, International Centre for Bamboo and Rattan, Beijing 100102, China
| | - Junwei Gan
- Key Laboratory of National Forestry and Grassland Administration/Beijing for Bamboo & Rattan Science and Technology, International Centre for Bamboo and Rattan, Beijing 100102, China
| | - Yufei Meng
- Key Laboratory of National Forestry and Grassland Administration/Beijing for Bamboo & Rattan Science and Technology, International Centre for Bamboo and Rattan, Beijing 100102, China
| | - Zhiqiang Li
- Key Laboratory of National Forestry and Grassland Administration/Beijing for Bamboo & Rattan Science and Technology, International Centre for Bamboo and Rattan, Beijing 100102, China
| | - Shanying Li
- Key Laboratory of National Forestry and Grassland Administration/Beijing for Bamboo & Rattan Science and Technology, International Centre for Bamboo and Rattan, Beijing 100102, China
| | - Zeyu Fan
- Key Laboratory of National Forestry and Grassland Administration/Beijing for Bamboo & Rattan Science and Technology, International Centre for Bamboo and Rattan, Beijing 100102, China
| | - Yu Wang
- Key Laboratory of National Forestry and Grassland Administration/Beijing for Bamboo & Rattan Science and Technology, International Centre for Bamboo and Rattan, Beijing 100102, China
| | - Benhua Fei
- Key Laboratory of National Forestry and Grassland Administration/Beijing for Bamboo & Rattan Science and Technology, International Centre for Bamboo and Rattan, Beijing 100102, China
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Nudmamud-Thanoi S, Veerasakul S, Thanoi S. Pharmacogenetics of drug dependence: Polymorphisms of genes involved in GABA neurotransmission. Neurosci Lett 2020; 726:134463. [PMID: 31472163 DOI: 10.1016/j.neulet.2019.134463] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Revised: 08/18/2019] [Accepted: 08/26/2019] [Indexed: 10/26/2022]
Abstract
GABA plays a critical role in brain reward pathways via projecting signals from the ventral tegmental area to the nucleus accumbens. Activation of the reward circuitry by abused drugs induces abnormalities of GABA neurotransmission. Recent studies have indicated the involvement of GABAergic genes in the mechanism of drug dependence and its consequences. The aim of this paper is to provide a brief review of association studies of GABA-related genes with drug dependence. Single nucleotide polymorphisms (SNPs) in genes involved in GABA neurotransmission such as GABA receptor genes (GABR, GABBR), and glutamic acid decarboxylase genes (GAD) are the focus of this review as potential risk factors for drug dependence and its consequence psychosis.
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Affiliation(s)
- Sutisa Nudmamud-Thanoi
- Department of Anatomy, Faculty of Medical Science, Naresuan University, Phitsanulok, 65000, Thailand; Centre of Excellence in Medical Biotechnology, Faculty of Medical Science, Naresuan University, Phitsanulok, 65000, Thailand.
| | - Siriluk Veerasakul
- Centre of Excellence in Medical Biotechnology, Faculty of Medical Science, Naresuan University, Phitsanulok, 65000, Thailand; Department of Occupational Health and Safety, School of Public Health, Walailak University, Nakhon Si Thammarat, 80160, Thailand
| | - Samur Thanoi
- Department of Anatomy, Faculty of Medical Science, Naresuan University, Phitsanulok, 65000, Thailand; Centre of Excellence in Medical Biotechnology, Faculty of Medical Science, Naresuan University, Phitsanulok, 65000, Thailand
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Zhao H, Zhao S, Fei B, Liu H, Yang H, Dai H, Wang D, Jin W, Tang F, Gao Q, Xun H, Wang Y, Qi L, Yue X, Lin S, Gu L, Li L, Zhu T, Wei Q, Su Z, Wan TBWA, Ofori DA, Muthike GM, Mengesha YM, de Castro E Silva RM, Beraldo AL, Gao Z, Liu X, Jiang Z. Announcing the Genome Atlas of Bamboo and Rattan ( GABR) project: promoting research in evolution and in economically and ecologically beneficial plants. Gigascience 2018. [PMID: 28637269 PMCID: PMC5570132 DOI: 10.1093/gigascience/gix046] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Bamboo and rattan are widely grown for manufacturing, horticulture, and agroforestry. Bamboo and rattan production might help reduce poverty, boost economic growth, mitigate climate change, and protect the natural environment. Despite progress in research, sufficient molecular and genomic resources to study these species are lacking. We launched the Genome Atlas of Bamboo and Rattan (GABR) project, a comprehensive, coordinated international effort to accelerate understanding of bamboo and rattan genetics through genome analysis. GABR includes 2 core subprojects: Bamboo-T1K (Transcriptomes of 1000 Bamboos) and Rattan-G5 (Genomes of 5 Rattans), and several other subprojects. Here we describe the organization, directions, and status of GABR.
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Affiliation(s)
- Hansheng Zhao
- State Forestry Administration Key Open Laboratory on the Science and Technology of Bamboo and Rattan, International Center for Bamboo and Rattan, Futongdong Rd, WangJing, Chaoyang District 100102, Beijing, China
| | - Shancen Zhao
- BGI-Shenzhen, Main Building Beishan Industrial Zone, Yantian District, Shenzhen 518083, Guangdong, China
| | | | - Benhua Fei
- State Forestry Administration Key Open Laboratory on the Science and Technology of Bamboo and Rattan, International Center for Bamboo and Rattan, Futongdong Rd, WangJing, Chaoyang District 100102, Beijing, China
| | - Huan Liu
- BGI-Shenzhen, Main Building Beishan Industrial Zone, Yantian District, Shenzhen 518083, Guangdong, China
| | - Huanming Yang
- BGI-Shenzhen, Main Building Beishan Industrial Zone, Yantian District, Shenzhen 518083, Guangdong, China
| | - Honghai Dai
- State Forestry Administration Key Open Laboratory on the Science and Technology of Bamboo and Rattan, International Center for Bamboo and Rattan, Futongdong Rd, WangJing, Chaoyang District 100102, Beijing, China
| | - Dan Wang
- State Forestry Administration Key Open Laboratory on the Science and Technology of Bamboo and Rattan, International Center for Bamboo and Rattan, Futongdong Rd, WangJing, Chaoyang District 100102, Beijing, China
| | - Wei Jin
- International Network for Bamboo and Rattan, Futongdong Rd, Wangjing, Chaoyang District 100102, Beijing, China
| | - Feng Tang
- State Forestry Administration Key Open Laboratory on the Science and Technology of Bamboo and Rattan, International Center for Bamboo and Rattan, Futongdong Rd, WangJing, Chaoyang District 100102, Beijing, China
| | - Qiang Gao
- BGI-Shenzhen, Main Building Beishan Industrial Zone, Yantian District, Shenzhen 518083, Guangdong, China
| | - Hang Xun
- State Forestry Administration Key Open Laboratory on the Science and Technology of Bamboo and Rattan, International Center for Bamboo and Rattan, Futongdong Rd, WangJing, Chaoyang District 100102, Beijing, China
| | - Yuwei Wang
- State Forestry Administration Key Open Laboratory on the Science and Technology of Bamboo and Rattan, International Center for Bamboo and Rattan, Futongdong Rd, WangJing, Chaoyang District 100102, Beijing, China
| | - Lianghua Qi
- State Forestry Administration Key Open Laboratory on the Science and Technology of Bamboo and Rattan, International Center for Bamboo and Rattan, Futongdong Rd, WangJing, Chaoyang District 100102, Beijing, China.,Hainan Sanya National Positioning and Monitoring Station for Ecosystem of Bamboo and Rattan Associated Forest, Xincheng Rd, Tianya District, Sanya 572000, Hainan, China.,Research Institute of Tropical Forest Plants, International Center for Bamboo and Rattan, Xincheng Rd, Tianya District, Sanya 572000, Hainan, China
| | - Xianghua Yue
- State Forestry Administration Key Open Laboratory on the Science and Technology of Bamboo and Rattan, International Center for Bamboo and Rattan, Futongdong Rd, WangJing, Chaoyang District 100102, Beijing, China.,Anhui Taiping Experimental Station, International Center for Bamboo and Rattan, Cuiwei Rd, Huangshan District, Huangshan 245716, Anhui, China
| | - Shuyan Lin
- Nanjing Forestry University, Bamboo Research Institute, Longpan Rd, Xuanwu District, Nanjing 210037, Jiangsu, China
| | - Lianfeng Gu
- Basic Forestry and Proteomics Research Center, Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Shangxiadian Rd, Cangshan District, Fuzhou 350002, Fujian, China
| | - Lubin Li
- Research Institute of Forestry, Chinese Academy of Forestry, Xiangshan Rd, Haidian District 100091, Beijing, China
| | - Tiansheng Zhu
- School of Computer Science, Fudan University, Handan Rd, Yangpu District 200433, Shanghai, China
| | - Qiang Wei
- Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Longpan Rd, Xuanwu District, Nanjing 210037, Jiangsu, China.,Bamboo Research Institute, Nanjing Forestry University, Longpan Rd, Xuanwu District, Nanjing 210037, Jiangsu, China
| | - Zhen Su
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China; Agricultural University, Yuanmingyuan W Rd, Haidian District 100193, Beijing, China
| | - Tarmeze Bin Wanoup Ariffin Wan
- Forest Products Division, Forest Research Institute Malaysia, Jalan Frim, Kepong, Kuala Lumpur 52109, Selangor, Malaysia
| | - Daniel A Ofori
- Forestry Research Institute of Ghana, KNUST, Kumasi PO Box UP 63, Ashanti, Ghana
| | - George Mbeva Muthike
- Kenya Forestry Research Institute, Muguga off Nairobi-Nakuru Highway, 20412-00200, Nairobi, Kenya
| | - Yigardu Mulatu Mengesha
- Ethiopian Environment and Forest Research Institute, Gurd Shola, 24536-1000, Addis Ababa, Ethiopia
| | | | - Antonio Ludovico Beraldo
- School of Agricultural Engineering, University of Campinas, Av. Cândido Rondon, 501 - Cidade Universitária, Campinas - SP, 13083-875, São Paulo, Brazil
| | - Zhimin Gao
- State Forestry Administration Key Open Laboratory on the Science and Technology of Bamboo and Rattan, International Center for Bamboo and Rattan, Futongdong Rd, WangJing, Chaoyang District 100102, Beijing, China
| | - Xin Liu
- BGI-Shenzhen, Main Building Beishan Industrial Zone, Yantian District, Shenzhen 518083, Guangdong, China
| | - Zehui Jiang
- State Forestry Administration Key Open Laboratory on the Science and Technology of Bamboo and Rattan, International Center for Bamboo and Rattan, Futongdong Rd, WangJing, Chaoyang District 100102, Beijing, China
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