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Chen K, Huang X, Distler U, Tenzer S, Günay-Esiyok Ö, Gupta N. Apically-located P4-ATPase1-Lem1 complex internalizes phosphatidylserine and regulates motility-dependent invasion and egress in Toxoplasma gondii. Comput Struct Biotechnol J 2023; 21:1893-1906. [PMID: 36936814 PMCID: PMC10015115 DOI: 10.1016/j.csbj.2023.02.032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2022] [Revised: 02/17/2023] [Accepted: 02/17/2023] [Indexed: 02/22/2023] Open
Abstract
The membrane asymmetry regulated by P4-ATPases is crucial for the functioning of eukaryotic cells. The underlying spatial translocation or flipping of specific lipids is usually assured by respective P4-ATPases coupled to conforming non-catalytic subunits. Our previous work has identified five P4-ATPases (TgP4-ATPase1-5) and three non-catalytic partner proteins (TgLem1-3) in the intracellular protozoan pathogen, Toxoplasma gondii. However, their flipping activity, physiological relevance and functional coupling remain unknown. Herein, we demonstrate that TgP4-ATPase1 and TgLem1 work together to translocate phosphatidylserine (PtdSer) during the lytic cycle of T. gondii. Both proteins localize in the plasma membrane at the invasive (apical) end of its acutely-infectious tachyzoite stage. The genetic knockout of P4-ATPase1 and conditional depletion of Lem1 in tachyzoites severely disrupt the asexual reproduction and translocation of PtdSer across the plasma membrane. Moreover, the phenotypic analysis of individual mutants revealed a requirement of lipid flipping for the motility, egress and invasion of tachyzoites. Not least, the proximity-dependent biotinylation and reciprocal immunoprecipitation assays demonstrated the physical interaction of P4-ATPase1 and Lem1. Our findings disclose the mechanism and significance of PtdSer flipping during the lytic cycle and identify the P4-ATPase1-Lem1 heterocomplex as a potential drug target in T. gondii.
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Key Words
- BSA, bovine serum albumin
- CDC50, Cell Division Control 50
- COS, crossover sequence
- Cdc50
- DAPI, 4′,6-diamidino-2-phenylindole
- DHFR-TS, dihydrofolate reductase – thymidylate synthase
- HFF, human foreskin fibroblast
- HXGPRT, hypoxanthine-xanthine-guanine phosphoribosyltransferase
- IAA, indole-3-acetic acid
- LEM, Ligand Effector Module
- Lem1
- NBD, nitrobenzoxadiazole
- NBD-lipid
- P4-ATPase1
- PBS, phosphate-buffered saline
- Phosphatidylserine
- Phospholipid flipping
- PtdCho, phosphatidylcholine
- PtdEtn, phosphatidylethanolamine
- PtdSer, phosphatidylserine
- PtdThr, phosphatidylthreonine
- UTR, untranslated region
- cGMP, cyclic Guanosine Monophosphate
- mAID, (mini) auxin-inducible degron
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Affiliation(s)
- Kai Chen
- Department of Molecular Parasitology, Faculty of Life Sciences, Humboldt University, Berlin, Germany
| | - Xiyu Huang
- Department of Molecular Parasitology, Faculty of Life Sciences, Humboldt University, Berlin, Germany
| | - Ute Distler
- Institute of Immunology, University Medical Center of the Johannes-Gutenberg University, Mainz, Germany
| | - Stefan Tenzer
- Institute of Immunology, University Medical Center of the Johannes-Gutenberg University, Mainz, Germany
| | - Özlem Günay-Esiyok
- Department of Molecular Parasitology, Faculty of Life Sciences, Humboldt University, Berlin, Germany
| | - Nishith Gupta
- Department of Molecular Parasitology, Faculty of Life Sciences, Humboldt University, Berlin, Germany
- Intracellular Parasite Education and Research Labs (iPEARL), Department of Biological Sciences, Birla Institute of Technology and Science, Pilani (BITS-P), Hyderabad, India
- Corresponding author at: Department of Molecular Parasitology, Faculty of Life Sciences, Humboldt University, Berlin, Germany.
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Vo KC, Ruga L, Psathaki OE, Franzkoch R, Distler U, Tenzer S, Hensel M, Hegemann P, Gupta N. Plasticity and therapeutic potential of cAMP and cGMP-specific phosphodiesterases in Toxoplasma gondii. Comput Struct Biotechnol J 2022; 20:5775-5789. [PMID: 36382189 PMCID: PMC9619220 DOI: 10.1016/j.csbj.2022.09.022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Revised: 09/13/2022] [Accepted: 09/14/2022] [Indexed: 11/03/2022] Open
Abstract
Toxoplasma gondii is a common zoonotic protozoan pathogen adapted to intracellular parasitism in many host cells of diverse organisms. Our previous work has identified 18 cyclic nucleotide phosphodiesterase (PDE) proteins encoded by the parasite genome, of which 11 are expressed during the lytic cycle of its acutely-infectious tachyzoite stage in human cells. Here, we show that ten of these enzymes are promiscuous dual-specific phosphodiesterases, hydrolyzing cAMP and cGMP. TgPDE1 and TgPDE9, with a Km of 18 μM and 31 μM, respectively, are primed to hydrolyze cGMP, whereas TgPDE2 is highly specific to cAMP (Km, 14 μM). Immuno-electron microscopy revealed various subcellular distributions of TgPDE1, 2, and 9, including in the inner membrane complex, apical pole, plasma membrane, cytosol, dense granule, and rhoptry, indicating spatial control of signaling within tachyzoites. Notably, despite shared apical location and dual-catalysis, TgPDE8 and TgPDE9 are fully dispensable for the lytic cycle and show no functional redundancy. In contrast, TgPDE1 and TgPDE2 are individually required for optimal growth, and their collective loss is lethal to the parasite. In vitro phenotyping of these mutants revealed the roles of TgPDE1 and TgPDE2 in proliferation, gliding motility, invasion and egress of tachyzoites. Moreover, our enzyme inhibition assays in conjunction with chemogenetic phenotyping underpin TgPDE1 as a target of commonly-used PDE inhibitors, BIPPO and zaprinast. Finally, we identified a retinue of TgPDE1 and TgPDE2-interacting kinases and phosphatases, possibly regulating the enzymatic activity. In conclusion, our datasets on the catalytic function, physiological relevance, subcellular localization and drug inhibition of key phosphodiesterases highlight the previously-unanticipated plasticity and therapeutic potential of cyclic nucleotide signaling in T. gondii.
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Key Words
- 3′IT, 3′-insertional tagging
- Apicomplexa
- COS, crossover sequence
- CRISPR, clustered regularly interspaced short palindromic repeats
- DHFR-TS, dihydrofolate reductase – thymidylate synthase
- HFF, human foreskin fibroblast
- HXGPRT, hypoxanthine-xanthine-guanine phosphoribosyl transferase
- IMC, inner membrane complex
- Lytic cycle
- MoI, multiplicity of infection
- PDE, phosphodiesterase
- PKA, protein kinase A
- PKG, protein kinase G
- PM, plasma membrane
- Phosphodiesterase
- S. C., selection cassette
- TEM, transmission electron microscopy
- Tachyzoite
- cAMP & cGMP signaling
- sgRNA, single guide RNA
- smHA, spaghetti monster-HA
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Affiliation(s)
- Kim Chi Vo
- Department of Molecular Parasitology, Institute of Biology, Faculty of Life Sciences, Humboldt University, Berlin, Germany
| | - Liberta Ruga
- Department of Molecular Parasitology, Institute of Biology, Faculty of Life Sciences, Humboldt University, Berlin, Germany
| | - Olympia Ekaterini Psathaki
- University of Osnabrück, Center of Cellular Nanoanalytics (CellNanOs), Integrated Bioimaging Faciltiy (iBiOs), Germany
| | - Rico Franzkoch
- University of Osnabrück, Center of Cellular Nanoanalytics (CellNanOs), Integrated Bioimaging Faciltiy (iBiOs), Germany
| | - Ute Distler
- Institute of Immunology, University Medical Center of the Johannes-Gutenberg University Mainz, Mainz, Germany
| | - Stefan Tenzer
- Institute of Immunology, University Medical Center of the Johannes-Gutenberg University Mainz, Mainz, Germany
| | - Michael Hensel
- University of Osnabrück, Center of Cellular Nanoanalytics (CellNanOs), Integrated Bioimaging Faciltiy (iBiOs), Germany
| | - Peter Hegemann
- Department of Molecular Parasitology, Institute of Biology, Faculty of Life Sciences, Humboldt University, Berlin, Germany
| | - Nishith Gupta
- Department of Molecular Parasitology, Institute of Biology, Faculty of Life Sciences, Humboldt University, Berlin, Germany
- Department of Biological Sciences, Birla Institute of Technology and Science, Pilani (BITS-P), Hyderabad, India
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Cai K, Wang F, Lu JQ, Shen AN, Zhao SM, Zang WD, Gui YH, Zhao JY. Nicotinamide Mononucleotide Alleviates Cardiomyopathy Phenotypes Caused by Short-Chain Enoyl-Coa Hydratase 1 Deficiency. JACC Basic Transl Sci 2022; 7:348-362. [PMID: 35540099 PMCID: PMC9079797 DOI: 10.1016/j.jacbts.2021.12.007] [Citation(s) in RCA: 26] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/04/2021] [Revised: 12/21/2021] [Accepted: 12/21/2021] [Indexed: 02/08/2023]
Abstract
ECHS1 hydrates medium- and short-chain enoyl CoAs and catalyzes the oxidation of fatty acids and branched-chain amino acids. The mechanism driving ECHS1 deficiency–associated cardiomyopathy was investigated using conventional biochemistry and molecular biology methods, including immunoprecipitation and polymerase chain reaction. Echs1 heterogeneous knockout mice displayed cardiac dysfunction as evaluated by echocardiography. ECHS1 deficiency causes cardiomyopathy by enhancing p300-mediated H3K9ac. ECHS1 deficiency–induced cardiomyopathy can be prevented using an intervention approach targeting H3K9ac.
Short-chain enoyl-CoA hydratase 1 (ECHS1) deficiency plays a role in cardiomyopathy. Whether ECHS1 deficiency causes or is only associated with cardiomyopathy remains unclear. By using Echs1 heterogeneous knockout (Echs1+/-) mice, we found that ECHS1 deficiency caused cardiac dysfunction, as evidenced by diffuse myocardial fibrosis and upregulated fibrosis-related genes. Mechanistically, ECHS1 interacts with the p300 nuclear localization sequence, preventing its nuclear translocation in fibroblasts. ECHS1 deficiency promotes p300 nuclear translocation, leading to increased H3K9 acetylation, a known risk factor for cardiomyopathy. Nicotinamide mononucleotide–mediated acetylation targeting suppressed ECHS1 deficiency–induced cardiomyopathy phenotypes in Echs1+/- mice. Thus, enhancing p300-mediated H3K9ac is a potential interventional approach for preventing ECHS1 deficiency–induced cardiomyopathy.
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Key Words
- ANP, atrial natriuretic peptide
- BCAA, branched-chain amino acid
- BNP, brain natriuretic peptide
- DCM, dilated cardiomyopathy
- ECHS1, short-chain enoyl-CoA hydratase 1
- FA, fatty acid
- HCM, hypertrophic cardiomyopathy
- HFF, human foreskin fibroblast
- IVSd, interventricular septum in end-diastole
- IVSs, interventricular septum in end-systole
- LVEF, left ventricular ejection fraction
- LVFS, left ventricular fractional shortening
- LVIDd, left ventricular internal dimension in end-diastole
- LVIDs, left ventricular internal dimension in end-systole
- LVPWd, left ventricular posterior wall in end-diastole
- LVPWs, left ventricular posterior wall in end-systole
- NMN, nicotinamide mononucleotide
- acetylation of H3K9
- cardiomyopathy
- enoyl-CoA hydratase 1
- nicotinamide mononucleotide
- p300
- α-SMA, smooth muscle actin-α
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Affiliation(s)
- Ke Cai
- NHC Key Laboratory of Neonatal Diseases, Cardiovascular Center, Children's Hospital of Fudan University, State Key Laboratory of Genetic Engineering, and School of Life Sciences, Fudan University, Shanghai, China
| | - Feng Wang
- NHC Key Laboratory of Neonatal Diseases, Cardiovascular Center, Children's Hospital of Fudan University, State Key Laboratory of Genetic Engineering, and School of Life Sciences, Fudan University, Shanghai, China
| | - Jia-Quan Lu
- NHC Key Laboratory of Neonatal Diseases, Cardiovascular Center, Children's Hospital of Fudan University, State Key Laboratory of Genetic Engineering, and School of Life Sciences, Fudan University, Shanghai, China
| | - An-Na Shen
- NHC Key Laboratory of Neonatal Diseases, Cardiovascular Center, Children's Hospital of Fudan University, State Key Laboratory of Genetic Engineering, and School of Life Sciences, Fudan University, Shanghai, China
| | - Shi-Min Zhao
- NHC Key Laboratory of Neonatal Diseases, Cardiovascular Center, Children's Hospital of Fudan University, State Key Laboratory of Genetic Engineering, and School of Life Sciences, Fudan University, Shanghai, China.,Key Laboratory of Reproduction Regulation of NPFPC, Fudan University, Shanghai, China
| | - Wei-Dong Zang
- School of Basic Medical Sciences, Zhengzhou University, Zhengzhou, China
| | - Yong-Hao Gui
- NHC Key Laboratory of Neonatal Diseases, Cardiovascular Center, Children's Hospital of Fudan University, State Key Laboratory of Genetic Engineering, and School of Life Sciences, Fudan University, Shanghai, China
| | - Jian-Yuan Zhao
- NHC Key Laboratory of Neonatal Diseases, Cardiovascular Center, Children's Hospital of Fudan University, State Key Laboratory of Genetic Engineering, and School of Life Sciences, Fudan University, Shanghai, China.,School of Basic Medical Sciences, Zhengzhou University, Zhengzhou, China
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Vo KC, Günay-Esiyok Ö, Liem N, Gupta N. The protozoan parasite Toxoplasma gondii encodes a gamut of phosphodiesterases during its lytic cycle in human cells. Comput Struct Biotechnol J 2020; 18:3861-3876. [PMID: 33335684 PMCID: PMC7720076 DOI: 10.1016/j.csbj.2020.11.024] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2020] [Revised: 11/11/2020] [Accepted: 11/13/2020] [Indexed: 01/21/2023] Open
Abstract
Toxoplasma genome harbors at least 18 phosphodiesterases encoded by distinct genes. Most parasite PDEs lack regulatory modules and are quite divergent from their human orthologs. Acutely-infectious tachyzoite stage of T. gondii expresses 11 PDEs with varied localizations. PDE8 and PDE9 are closely-related dual-substrate specific proteins residing in the apical pole. Homology modeling of PDE8 and PDE9 reveals a conserved 3D topology and substrate pocket. PDE9 is dispensable in tachyzoites, signifying a functional redundancy with PDE8.
Cyclic nucleotide signaling is pivotal to the asexual reproduction of Toxoplasma gondii, however little do we know about the phosphodiesterase enzymes in this widespread obligate intracellular parasite. Here, we identified 18 phosphodiesterases (TgPDE1-18) in the parasite genome, most of which form apicomplexan-specific clades and lack archetypal regulatory motifs often found in mammalian PDEs. Genomic epitope-tagging in the tachyzoite stage showed the expression of 11 phosphodiesterases with diverse subcellular distributions. Notably, TgPDE8 and TgPDE9 are located in the apical plasma membrane to regulate cAMP and cGMP signaling, as suggested by their dual-substrate catalysis and structure modeling. TgPDE9 expression can be ablated with no apparent loss of growth fitness in tachyzoites. Likewise, the redundancy in protein expression, subcellular localization and predicted substrate specificity of several other PDEs indicate significant plasticity and spatial control of cyclic nucleotide signaling during the lytic cycle. Our findings shall enable a rational dissection of signaling in tachyzoites by combinatorial mutagenesis. Moreover, the phylogenetic divergence of selected Toxoplasma PDEs from human counterparts can be exploited to develop parasite-specific inhibitors and therapeutics.
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Key Words
- 3′IT, 3′-insertional tagging
- AC, adenylate cyclase
- Apicomplexa
- Bradyzoite
- COS, crossover sequence
- CRISPR, clustered regularly interspaced short palindromic repeats
- EES, entero-epithelial stages
- FPKM, fragments per kilobase of exon model per million
- GC, guanylate cyclase
- GMQE, Global Model Quality Estimation
- HFF, human foreskin fibroblast
- HXGPRT, hypoxanthine-xanthine-guanine phosphoribosyltransferase
- IMC, inner membrane complex
- Lytic cycle
- MAEBL, merozoite adhesive erythrocytic binding ligand
- MOI, multiplicity of infection
- OCRE, octamer repeat
- PDE, phosphodiesterase
- PKA, protein kinase A
- PKG, protein kinase G
- PM, plasma membrane
- QMEAN, Quality Model Energy Analysis
- Tachyzoite
- cAMP and cGMP signaling
- sgRNA, single guide RNA
- smHA, spaghetti monster-HA
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Affiliation(s)
- Kim Chi Vo
- Department of Molecular Parasitology, Institute of Biology, Faculty of Life Sciences, Humboldt University, Berlin, Germany
| | - Özlem Günay-Esiyok
- Department of Molecular Parasitology, Institute of Biology, Faculty of Life Sciences, Humboldt University, Berlin, Germany
| | - Nicolas Liem
- Experimental Biophysics, Institute of Biology, Faculty of Life Sciences, Humboldt University, Berlin, Germany
| | - Nishith Gupta
- Department of Molecular Parasitology, Institute of Biology, Faculty of Life Sciences, Humboldt University, Berlin, Germany.,Department of Biological Sciences, Birla Institute of Technology and Science Pilani (BITS-P), Hyderabad, India
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Spary LK, Salimu J, Webber JP, Clayton A, Mason MD, Tabi Z. Tumor stroma-derived factors skew monocyte to dendritic cell differentiation toward a suppressive CD14 + PD-L1 + phenotype in prostate cancer. Oncoimmunology 2014; 3:e955331. [PMID: 25941611 DOI: 10.4161/21624011.2014.955331] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2014] [Accepted: 07/25/2014] [Indexed: 12/31/2022] Open
Abstract
Tumor-associated stromal myofibroblasts are essential for the progression and metastatic spread of solid tumors. Corresponding myeloid cell infiltration into primary tumors is a negative prognostic factor in some malignancies. The aim of this study was to define the exact role of stromal myofibroblasts and stromal factors in early prostate carcinoma (PCa) regulating monocyte infiltration and differentiation into dendritic cells (DCs). Epithelial and stromal primary cultures were generated from PCa biopsies and their purity confirmed. Stromal cells produced significantly more of the (C-C) motif chemokine ligand 2 (CCL2), interleukin 6 (IL-6) and transforming growth factor β (TGFβ) than epithelial cells. Monocyte chemoattraction was predominantly due to stromal-derived factors, mainly CCL2. DCs generated in the presence of stromal (but not epithelial) factors upregulated CD209, but failed to downregulate the monocyte marker CD14 in a signal transducer and activator of transcription 3 (STAT3)-dependent manner. Monocytes exposed to stromal factors did not produce detectable amounts of IL-10, however, upon lipopolysaccharide stimulation, stromal factor generated dendritic cells (sDC) produced significantly more IL-10 and less IL-12 than their conventional DC counterparts. sDC failed to cross-present tumor-antigen to CD8+ T cells and suppressed T-cell proliferation. Most importantly, sDC expressed significantly elevated levels of programmed cell death ligand-1 (PD-L1) in a primarily STAT3 and IL-6-dependent manner. In parallel with our findings in vitro, tumor-infiltrating CD14+ cells in situ were found to express both PD-L1 and CD209, and a higher percentage of tumor-associated CD3+ T cells expressed programmed cell death-1 (PD-1) molecules compared to T cells in blood. These results demonstrate a hitherto undescribed, fundamental contribution of tumor-associated stromal myofibroblasts to the development of an immunosuppressive microenvironment in early PCa.
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Key Words
- CCL2
- CCL2, (C–C) motif chemokine ligand-2
- CFSE, carboxyfluorescein succinimidyl ester
- CK, cytokeratin
- CM, conditioned media
- CXCL, chemokine (C–X–C) motif
- DC, dendritic cell
- ELISA, enzyme-linked immunosorbent assay
- GM-CSF, granulocyte macrophage colony-stimulating factor
- HFF, human foreskin fibroblast
- HGF, hepatocyte growth factor
- I-TAC, interferon-inducible T cell α chemoattractant
- IFN, interferon
- IL, interleukin
- IL-6
- IP-10, interferon-γ induced protein 10
- LPS, lipopolysaccharide
- MIF, macrophage inhibitory factor
- PBMC, peripheral blood mononuclear cells
- PCaEp, prostate cancer epithelia
- PCaSt, prostate cancer stroma
- PD-1, programmed cell death-1
- PD-L1
- PD-L1, programmed cell death ligand-1
- RANTES/CCL5, regulated on activation, normal T cell expressed and secreted
- SCBM, stromal cell basal media
- SDF-1, stromal-derived factor-1
- STAT3
- STAT3, signal transducer and activator of transcription 3
- TGFβ, transforming growth factor β
- TIL, tumor infiltrating leukocytes
- VEGF, vascular endothelial growth factor
- antigen cross-presentation
- dendritic cells
- immunosuppression
- prostate cancer
- sDC, DC generated in the presence of 50% PCaSt-CM
- tumor microenvironment
- tumor stroma
- α-SMA, α-smooth muscle actin
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Affiliation(s)
- Lisa K Spary
- Institute of Cancer and Genetics; School of Medicine ; Cardiff University ; Whitchurch, Cardiff, UK
| | - Josephine Salimu
- Institute of Cancer and Genetics; School of Medicine ; Cardiff University ; Whitchurch, Cardiff, UK
| | - Jason P Webber
- Institute of Cancer and Genetics; School of Medicine ; Cardiff University ; Whitchurch, Cardiff, UK
| | - Aled Clayton
- Institute of Cancer and Genetics; School of Medicine ; Cardiff University ; Whitchurch, Cardiff, UK
| | - Malcolm D Mason
- Institute of Cancer and Genetics; School of Medicine ; Cardiff University ; Whitchurch, Cardiff, UK
| | - Zsuzsanna Tabi
- Institute of Cancer and Genetics; School of Medicine ; Cardiff University ; Whitchurch, Cardiff, UK
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