Interactions between reproductive biology and microbiomes in wild animal species

Many parts of the animal body harbor microbial communities, known as animal-associated microbiomes, that affect the regulation of physiological functions. Studies in human and animal models have demonstrated that the reproductive biology and such microbiomes also interact. However, this concept is poorly studied in wild animal species and little is known about the implications to fertility, parental/offspring health, and survival in natural habitats. The objective of this review is to (1) specify the interactions between animals' reproductive biology, including reproductive signaling, pregnancy, and offspring development, and their microbiomes, with an emphasis on wild species and (2) identify important research gaps as well as areas for further studies. While microbiomes present in the reproductive tract play the most direct role, other bodily microbiomes may also contribute to facilitating reproduction. In fish, amphibians, reptiles, birds, and mammals, endogenous processes related to the host physiology and behavior (visual and olfactory reproductive signals, copulation) can both influence and be influenced by the structure and function of microbial communities. In addition, exposures to maternal microbiomes in mammals (through vagina, skin, and milk) shape the offspring microbiomes, which, in turn, affects health later in life. Importantly, for all wild animal species, host-associated microbiomes are also influenced by environmental variations. There is still limited literature on wild animals compared to the large body of research on model species and humans. However, the few studies in wild species clearly highlight the necessity of increased research in rare and endangered animals to optimize conservation efforts in situ and ex situ. Thus, the link between microbiomes and reproduction is an emerging and critical component in wild animal conservation.

Orchid conservation in China from 2000 to 2020: Achievements and perspectives

We review achievements in the conservation of orchid diversity in China over the last 21 years. We provide updated information on orchid biodiversity and suggestions for orchid conservation in China. We outline national policies of biodiversity conservation, especially of orchid conservation, which provide general guidelines for orchid conservation in China. There are now approximately 1708 known species of Orchidaceae in 181 genera in China, including five new genera and 365 new species described over the last 21 years. The assessment of risk of extinction of all 1502 known native orchid species in China in 2013 indicated that 653 species were identified as threatened, 132 species were treated as data-deficient, and four species endemic to China were classified as extinct. Approximately 1100 species (ca. 65%) are protected in national nature reserves, and another ~66 species in provincial nature reserves. About 800 native orchid species have living collections in major botanical gardens. The pollination biology of 74 native orchid species and the genetic diversity and spatial genetic structure of 29 orchid species have been investigated at a local scale and/or across species distributions. The mycorrhizal fungal community composition has been investigated in many genera, such as Bletilla, Coelogyne, Cymbidium, Cypripedium, and Dendrobium. Approximately 292 species will be included in the list of national key protected wild plants this year. Two major tasks for near future include in situ conservation and monitoring population dynamics of endangered species.

In situ conservation of traditional vegetable diversity in Wa homegardens in southwestern Yunnan, China

BACKGROUND

Homegardens are in situ conservation sources of germplasm diversity for overcoming homogenous germplasm problems in industrial agricultural systems. The Wa people constitute a long-dwelling ethnic group mainly in southwestern Yunnan with a unique culture and rich knowledge of traditional vegetables. We hypothesized that traditional vegetable varieties are well conserved in Wa homegardens because Wa culture promotes the preservation of traditional vegetables. We surveyed vegetable varieties and the practices that are involved in the conservation of traditional vegetables in Wa homegardens, which could form the basis for in situ conservation.

METHODS

The methods were used including questionnaires and semi-structured interviews. Sixty homegardens were surveyed through purposive sampling in 6 Wa villages. We documented ethnobotanical information about vegetables in homegardens. Plant species were identified according to the Flora of China. And thematic analyses were conducted for in-depth interviews to identify the conservation factors for traditional vegetables.

RESULTS

Fifty-two vegetable species belonging to 16 families and 41 genera were recorded from 60 Wa homegardens. Fifty-five traditional vegetable varieties and thirty-six hybrids were recorded. Among all the villages, 23 ± 6 (average ± SD) traditional vegetable varieties per homegarden and 9 ± 3 (average ± SD) introduced varieties per homegarden were recorded. Local seeds were stored in 78% of households, with an additional 9% of households' seed supplies coming from neighbors and relatives; the other 13% of households purchased local seeds from markets. In 83% of families, the female head was mainly responsible for the decision-making concerning traditional vegetables in homegardens; in 10% of families, the male head was responsible for decision-making, and a small percentage (2%) was determined by elderly people. Five percent of families made decisions jointly between male and female household heads.

CONCLUSIONS

This study demonstrated that rich traditional germplasm diversity is harbored in Wa homegardens because of the unique culture and traditional knowledge of Wa communities, which are practiced daily with homegrown food plants. Local vegetable seed conservation and sharing systems help maintain germplasm diversity in the Wa community homegardens. Wa homegardens constitute a practical solution for protecting traditional germplasm diversity and maintaining traditional lifestyles.

Parasites and health status of free-ranging capybaras (Hydrochoerus hydrochaeris) in the Atlantic Forest and Caatinga biomes of Brazil

Due to the degradation and loss of its natural habitat, the presence of capybaras in urban environments and crop areas has been frequently reported in various regions of Brazil. The objective of this study was to identify the parasitic fauna of free-living capybaras in two impacted biomes of the northeastern region (Atlantic Forest and Caatinga), as well as to evaluate the impact of parasitism on the health of these rodents. For this, ticks, fecal and blood samples (for hematology and serum biochemistry evaluation) were collected from 23 free-ranging capybaras from four areas of Atlantic Forest (areas 1, 2 and 3) and Caatinga (area 4) biomes. Of the 23 animals with parasites, 73.9% (17/23) were parasitized simultaneously by gastrointestinal parasites (GIP) (Strongylida, Strongyloides chapini, Capillaria sp., Trematoda and Eimeria sp.) and Amblyomma ticks (larvae of Amblyomma sp. - areas 1, 2, and 3; Amblyomma dubitatum - areas 1 and 2; A. sculptum - areas 3 and 4), while 26.1% (6/23) were parasitized exclusively by ticks. The trematode Hippocrepis hippocrepis was collected during the necropsy of one animal that died during the study. Most hematological and serum biochemical parameters were within the reference values for the species, except AST, albumin, urea, and Na, which presented higher values. Some parameters presented statistically significant differences associated with parasitism, with higher values for animals with co-infection (GIP and ticks) than animals parasitized by ticks only: leukocyte counts (p = 0.0332), neutrophils (p = 0.0498), monocytes (p = 0.0443), as well as creatinine (p = 0.0422) and lactate (p = 0.0307). This may mean that the GIP identified in this study can have a greater impact on the hematological and serum biochemical parameters. However, although parasitized and living in threatened biomes, the animals were healthy, demonstrating that they could be adapted to parasitism. Amblyomma sculptum was recorded for the first time in capybaras in the Caatinga biome in Pernambuco state. The presence of A. sculptum evidences the need for studies about the infection by Rickettsia on capybaras and their ticks, to provide data on the potential risk of occurrence of Brazilian Spotted Fever in Pernambuco state, within a One Health perspective.

Ex situ and in situ data for endangered livestock breeds in Spain

Improvements in ex situ storage of genetic and reproductive materials offer an alternative for endangered livestock breed conservation. This paper presents a dataset for current ex situ collections and in situ population for 179 Spanish livestock breeds of seven species, cattle, sheep, pig, chicken, goat, horse and donkey. Ex situ data was obtained via survey administered to 18 functioning gene banks in Spain and relates to the reproductive genetic materials (semen doses) of 210 livestock breeds distributed across the gene banks. In situ data combines CENSUS information with linear regression techniques and relates to the geographic distribution of 179 Spanish autochthonous livestock breeds (2009-2018), and in situ population projections and extinction probabilities (2019-2060). We use a decision variable defining an “acceptable level of risk” that allows decision makers to specify tolerable levels of in situ breed endangerment when taking ex situ collection and storage decisions.

Recovering threatened plant species and their habitats: The need for integrated action

As an introduction to the Special Issue on the restoration of threatened plant species and their habitats, this editorial shows how the various papers in the issue address the range of in situ interventions involved in species population management and restoration of their habitat, together with examples of case studies implementing these actions. It stresses the need for integrating these various interventions. It highlights the importance of protected areas in providing a degree of protection for threatened species but also the need to complement this with actions at the species level to ensure the effective conservation and long term persistence of these species. It emphasizes that ecological restoration is a complement to, not a substitute for conservation, and that the balance of effort and allocation of resources between them is a key issue.

Habitat differentiation and conservation gap of Magnolia biondii, M. denudata, and M. sprengeri in China

The flower buds of Magnolia biondii, M. denudata, and M. sprengeri are the materials of Xinyi, a traditional Chinese medicine. The harvest of flower buds and habitat fragmentation caused by human disturbance heavily threatens the natural regeneration and survival of these three Magnolia species. With the aim to support the conservation and improve the effectiveness of conservation, we performed an assessment on habitat suitability, influences of environmental variables on habitat suitability, and the conservation gap of these three Magnolia species, based on the Maxent modeling method. The results indicated that: (1) altitude, annual mean temperature, extreme temperature, temperature fluctuation, annual precipitation, and extreme precipitation are the most influential environmental variables for the distribution of M. sprengeri, M. biondii, and M. denudata; (2) obvious habitat differentiations were observed among M. biondii, M. denudata, and M. sprengeri. M. sprengeri tends to be located in further northern areas with higher altitudes, lower temperatures, and lower precipitation compared to M. biondii and M. denudata; and (3) a large proportion of suitable habitats have been left without protection. Woodland and forest shared the largest area out of the suitable habitats. However, grassland, agricultural land, residential land, and mining and industry areas also occupied large areas of suitable habitats.

Orchid conservation: how can we meet the challenges in the twenty-first century?

With c. 28,000 species, orchids are one of the largest families of flowering plants, and they are also one of the most threatened, in part due to their complex life history strategies. Threats include habitat destruction and climate change, but many orchids are also threatened by unsustainable (often illegal and/or undocumented) harvest for horticulture, food or medicine. The level of these threats now outstrips our abilities to combat them at a species-by-species basis for all species in such a large group as Orchidaceae; if we are to be successful in conserving orchids for the future, we will need to develop approaches that allow us to address the threats on a broader scale to complement focused approaches for the species that are identified as being at the highest risk.

Orchid conservation: how can we meet the challenges in the twenty-first century?

With c. 28,000 species, orchids are one of the largest families of flowering plants, and they are also one of the most threatened, in part due to their complex life history strategies. Threats include habitat destruction and climate change, but many orchids are also threatened by unsustainable (often illegal and/or undocumented) harvest for horticulture, food or medicine. The level of these threats now outstrips our abilities to combat them at a species-by-species basis for all species in such a large group as Orchidaceae; if we are to be successful in conserving orchids for the future, we will need to develop approaches that allow us to address the threats on a broader scale to complement focused approaches for the species that are identified as being at the highest risk.

Climate change and national crop wild relative conservation planning

Climate change is likely to be one of the most important factors affecting our future food security. To mitigate negative impacts, we will require our crops to be more genetically diverse. Such diversity is available in crop wild relatives (CWRs), the wild taxa relatively closely related to crops and from which diverse traits can be transferred to the crop. Conservation of such genetic resources resides within the nation where they are found; therefore, national-level conservation recommendations are fundamental to global food security. We investigate the potential impact of climate change on CWR richness in Norway. The consequences of a 1.5 and 3.0 °C temperature rise were studied for the years 2030, 2050, 2070, 2080 and then compared to the present climate. The results indicate a pattern of shifting CWR richness from the south to the north, with increases in taxa turnover and in the numbers of threatened taxa. Recommendations for in situ and ex situ conservation actions over the short and long term for the priority CWRs in Norway are presented. The methods and recommendations developed here can be applied within other nations and at regional and global levels to improve the effectiveness of conservation actions and help ensure global food security.

Influence of altitude and enhanced ultraviolet-B radiation on tuber production, seed viability, leaf pigments and morphology in the wild potato species Solanum kurtzianum Bitter & Wittm collected from an elevational gradient

Climate change could lead to an upward shift in plant distribution, exposing populations to higher levels of ultraviolet (UV)-B radiation. In the framework of an in situ strategy for conserving potato wild relatives, we evaluated the effect of high UV-B levels on natural population of Solanum kurtzianum. The hypothesis is that plants from naturally higher altitudes are more adapted to increased UV-B radiation. Two populations from low and high altitudes were field supplemented using UV-B-lamps (+UV-B) or excluded from it with plastic filters. Additionally, to assess in which extent the plant responses to these artificial experimental conditions are reproducible in natural conditions, three genotypes were cultivated in two mountain experimental gardens (EG) at different elevations. +UV-B treatment induced changes in leaf morphology and increases in phenolic compounds in both populations, indicating plant adaptation, since chlorophylls and reproductive structures were not negatively affected. These results indicate that this environmental factor may not limit the displacement of populations towards sites with higher UV-B levels. Meanwhile, in higher-altitude EG a tubers yield reduction, mainly through a decreased tuber number and a bigger accumulation of phenolic compounds than in +UV-B treatment were observed, suggesting that UV-B is not the only factor involved in plants adaptation to high altitude environments.

Agrobiodiversity and in situ conservation in ethnic minority communities of Xishuangbanna in Yunnan Province, Southwest China

BACKGROUND

Xishuangbanna of Yunnan Province, southwest of China belongs to a global biodiversity and cultural hotspot. Agrobiodiversity plays an essential role in local livelihoods and traditional culture in the region. However, preliminary studies suggest that diversity of crop plants and livestock species is declining. We hypothesized that agrobiodiversity and traditional means of preserving agrobiodiversity are threatened because of changes in government policy in favor of commercial plantations, land use change and changes in traditional agricultural practices. We investigated whether or not agrobiodiversity was declining, the specific causes, and signs of active biodiversity conservation practices in ethnic minority communities of Xishuangbanna which could form the basis for extensive in situ conservation programmes.

METHODS

A series of field studies to document trends in agrobiodiversity were conducted in different ethnic minority communities in Menghai County, Mengla County and Jinghong City of Xishuangbanna of Yunnan Province, southwest of China between July 2015 and February 2016. Data was obtained through the use of semi-structured questionnaires, field observation and participatory rural appraisal (PRA) tools. A total of 360 ethnic households provided information on current status, functions, characteristics, changes, and threatened factors of farming crop and livestock resources. Some measures for in situ conservation of agricultural biological resources were also researched using PRA methods.

RESULTS

Two hundred twenty-six crop varieties belonging to 31 families, 71 genera and 101 species were identified in Xishuangbanna, which included 83 vegetable crops, 77 food crops, 24 spice crops, 22 fruit crops, 13 cash crops, 6 oil crops, and 1 cloth crop, respectively. There were 15 livestock varieties, belonging to 6 major species: cattle, pigs, goats, chickens, ducks, and geese. Different crop and livestock resources had their own characteristics, functions and threatened factors. Since 2002, agroecosystem, crop diversity and livestock diversity have declined greatly over the Xishuangbanna region as a whole under implementation of the Sloping Land Conversion Program (SLCP). Swidden agriculture was completely eliminated under this program and gradually replaced by large land areas devoted to rubber, tea and banana plantations. Villager numbers engaging in farming production and population of crops and livestock were greatly decreased, particularly in terms of production of local traditional varieties. However, some in situ conservation measures such as seeds preservation, planting of traditional crops and raising livestock have played an important role in local agrobiodiversity conservation.

CONCLUSION

Abundant agricultural resources and agrobiodiversity are critical to the local livelihood and maintenance of traditional culture in Xishuangbanna. However, agrobiodiversity and related traditional culture have been greatly impacted by implementation of the SLCP since 2002. Therefore, in future conservation of agrobiodiversity, incorporating some sustainable protection measures based in local communities such as convening seed exchange fairs, conserving traditional varieties in permanent plots, making a visual documentary of indigenous cultivation, and providing traditional agricultural products to tourists should be carefully considered and adopted.

Plant diversity in a changing world: Status, trends, and conservation needs

The conservation of plants has not generated the sense of urgency-or the funding-that drives the conservation of animals, although plants are far more important for us. There are an estimated 500,000 species of land plants (angiosperms, gymnosperms, ferns, lycophytes, and bryophytes), with diversity strongly concentrated in the humid tropics. Many species are still unknown to science. Perhaps a third of all land plants are at risk of extinction, including many that are undescribed, or are described but otherwise data deficient. There have been few known global extinctions so far, but many additional species have not been recorded recently and may be extinct. Although only a minority of plant species have a specific human use, many more play important roles in natural ecosystems and the services they provide, and rare species are more likely to have unusual traits that could be useful in the future. The major threats to plant diversity include habitat loss, fragmentation, and degradation, overexploitation, invasive species, pollution, and anthropogenic climate change. Conservation of plant diversity is a massive task if viewed globally, but the combination of a well-designed and well-managed protected area system and ex situ gap-filling and back-up should work anywhere. The most urgent needs are for the completion of the global botanical inventory and an assessment of the conservation status of the 94% of plant species not yet evaluated, so that both in and ex situ conservation can be targeted efficiently. Globally, the biggest conservation gap is in the hyperdiverse lowland tropics and this is where attention needs to be focused.