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Baudry K, Issakidis-Bourguet E. A Semi-throughput Procedure for Assaying Plant NADP-malate Dehydrogenase Activity Using a Plate Reader. Bio Protoc 2023; 13:e4769. [PMID: 37638298 PMCID: PMC10450749 DOI: 10.21769/bioprotoc.4769] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Revised: 04/04/2023] [Accepted: 06/04/2023] [Indexed: 08/29/2023] Open
Abstract
Chloroplast NADP-dependent malate dehydrogenase (NADP-MDH) is a redox regulated enzyme playing an important role in plant redox homeostasis. Leaf NADP-MDH activation level is considered a proxy for the chloroplast redox status. NADP-MDH enzyme activity is commonly assayed spectrophotometrically by following oxaloacetate-dependent NADPH oxidation at 340 nm. We have developed a plate-adapted protocol to monitor NADP-MDH activity allowing faster data production and lower reagent consumption compared to the classic cuvette format of a spectrophotometer. We provide a detailed procedure to assay NADP-MDH activity and measure the enzyme activation state in purified protein preparations or in leaf extracts. This protocol is provided together with a semi-automatized data analysis procedure using an R script.
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Affiliation(s)
- Kevin Baudry
- Université Paris-Saclay, CNRS, INRAE, Université Evry, Institute of Plant Sciences Paris-Saclay (IPS2), Gif sur Yvette, France
- Université Paris Cité, CNRS, INRAE, Institute of Plant Sciences Paris-Saclay (IPS2), Gif sur Yvette, France
| | - Emmanuelle Issakidis-Bourguet
- Université Paris-Saclay, CNRS, INRAE, Université Evry, Institute of Plant Sciences Paris-Saclay (IPS2), Gif sur Yvette, France
- Université Paris Cité, CNRS, INRAE, Institute of Plant Sciences Paris-Saclay (IPS2), Gif sur Yvette, France
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Yokochi Y, Yoshida K, Hahn F, Miyagi A, Wakabayashi KI, Kawai-Yamada M, Weber APM, Hisabori T. Redox regulation of NADP-malate dehydrogenase is vital for land plants under fluctuating light environment. Proc Natl Acad Sci U S A 2021; 118:e2016903118. [PMID: 33531363 PMCID: PMC8017969 DOI: 10.1073/pnas.2016903118] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Abstract
Many enzymes involved in photosynthesis possess highly conserved cysteine residues that serve as redox switches in chloroplasts. These redox switches function to activate or deactivate enzymes during light-dark transitions and have the function of fine-tuning their activities according to the intensity of light. Accordingly, many studies on chloroplast redox regulation have been conducted under the hypothesis that "fine regulation of the activities of these enzymes is crucial for efficient photosynthesis." However, the impact of the regulatory system on plant metabolism is still unclear. To test this hypothesis, we here studied the impact of the ablation of a redox switch in chloroplast NADP-malate dehydrogenase (MDH). By genome editing, we generated a mutant plant whose MDH lacks one of its redox switches and is active even in dark conditions. Although NADPH consumption by MDH in the dark is expected to be harmful to plant growth, the mutant line did not show any phenotypic differences under standard long-day conditions. In contrast, the mutant line showed severe growth retardation under short-day or fluctuating light conditions. These results indicate that thiol-switch redox regulation of MDH activity is crucial for maintaining NADPH homeostasis in chloroplasts under these conditions.
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Affiliation(s)
- Yuichi Yokochi
- Laboratory of Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 226-8503 Yokohama, Japan
- School of Life Science and Technology, Tokyo Institute of Technology, 226-8503 Yokohama, Japan
| | - Keisuke Yoshida
- Laboratory of Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 226-8503 Yokohama, Japan
- School of Life Science and Technology, Tokyo Institute of Technology, 226-8503 Yokohama, Japan
| | - Florian Hahn
- Institute of Plant Biochemistry, Cluster of Excellence on Plant Sciences, Center for Synthetic Life Sciences, Heinrich Heine University Düsseldorf, 40225 Düsseldorf, Germany
| | - Atsuko Miyagi
- Department of Biochemistry and Molecular Biology, Graduate School of Science and Engineering, Saitama University, 338-8570 Saitama, Japan
| | - Ken-Ichi Wakabayashi
- Laboratory of Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 226-8503 Yokohama, Japan
- School of Life Science and Technology, Tokyo Institute of Technology, 226-8503 Yokohama, Japan
| | - Maki Kawai-Yamada
- Department of Biochemistry and Molecular Biology, Graduate School of Science and Engineering, Saitama University, 338-8570 Saitama, Japan
| | - Andreas P M Weber
- Institute of Plant Biochemistry, Cluster of Excellence on Plant Sciences, Center for Synthetic Life Sciences, Heinrich Heine University Düsseldorf, 40225 Düsseldorf, Germany
| | - Toru Hisabori
- Laboratory of Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology, 226-8503 Yokohama, Japan;
- School of Life Science and Technology, Tokyo Institute of Technology, 226-8503 Yokohama, Japan
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