Cytogenetics Meets Genomics: Cytotaxonomy and Genomic Relationships among Color Variants of the Asian Arowana Scleropages formosus

Scleropages formosus (Osteoglossiformes, Teleostei) represents one of the most valued ornamental fishes, yet it is critically endangered due to overexploitation and habitat destruction. This species encompasses three major color groups that naturally occur in allopatric populations, but the evolutionary and taxonomic relationships of S. formosus color varieties remain uncertain. Here, we utilized a range of molecular cytogenetic techniques to characterize the karyotypes of five S. formosus color phenotypes, which correspond to naturally occurring variants: the red ones (Super Red); the golden ones (Golden Crossback and Highback Golden); the green ones (Asian Green and Yellow Tail Silver). Additionally, we describe the satellitome of S. formosus (Highback Golden) by applying a high-throughput sequencing technology. All color phenotypes possessed the same karyotype structure 2n = 50 (8m/sm + 42st/a) and distribution of SatDNAs, but different chromosomal locations of rDNAs, which were involved in a chromosome size polymorphism. Our results show indications of population genetic structure and microstructure differences in karyotypes of the color phenotypes. However, the findings do not clearly back up the hypothesis that there are discrete lineages or evolutionary units among the color phenotypes of S. formosus, but another case of interspecific chromosome stasis cannot be excluded.

A biflagellate spermatozoon in the African bonytongue Heterotis niloticus (Teleostei, Osteoglossidae)

In this transmission electron microscopy study, we describe the ultrastructure of the spermatozoon of Heterotis niloticus (Osteoglossiformes), which is distinguished by having two flagella. Our investigation also highlights the great diversity of sperm cell structures observed across osteoglossiform families, such as aflagellate (Gymnarchidae, Mormyridae), monoflagellate (Notopteridae, Pantodontidae) and biflagellate spermatozoa. As biflagellate spermatozoa are rare in vertebrates, we also summarize the orders and families known to possess this ultrastructural character, most of which are fishes.

From Chromosomes to Genome: Insights into the Evolutionary Relationships and Biogeography of Old World Knifefishes (Notopteridae; Osteoglossiformes)

In addition to its wide geographical distribution, osteoglossiform fishes represent one of the most ancient freshwater teleost lineages; making it an important group for systematic and evolutionary studies. These fishes had a Gondwanan origin and their past distribution may have contributed to the diversity present in this group. However, cytogenetic and genomic data are still scarce, making it difficult to track evolutionary trajectories within this order. In addition, their wide distribution, with groups endemic to different continents, hinders an integrative study that allows a globalized view of its evolutionary process. Here, we performed a detailed chromosomal analysis in Notopteridae fishes, using conventional and advanced molecular cytogenetic methods. Moreover, the genetic distances of examined species were assessed by genotyping using diversity arrays technology sequencing (DArTseq). These data provided a clear picture of the genetic diversity between African and Asian Notopteridae species, and were highly consistent with the chromosomal, geographical, and historical data, enlightening their evolutionary diversification. Here, we discuss the impact of continental drift and split of Pangea on their recent diversity, as well as the contribution to biogeographical models that explain their distribution, highlighting the role of the Indian subcontinent in the evolutionary process within the family.

Extreme nitrite tolerance in the clown knifefish Chitala ornata is linked to up-regulation of methaemoglobin reductase activity

The clown knifefish is a facultative air breather, which is widely farmed in freshwater ponds in Vietnam. Here we report a very high nitrite tolerance (96h LC₅₀ of 7.82mM) in this species and examine the effects of 1mM (LC₅) and 2.5mM (LC₁₀) ambient nitrite on haemoglobin (Hb) derivatives, electrolyte levels, acid-base status, and total body water content during 7days of exposure. Furthermore, we tested the hypothesis that erythrocyte methaemoglobin (metHb) reductase activity is upregulated by nitrite exposure. Plasma nitrite levels increased for 2-3days but stayed below environmental levels and fell towards control values during the last half of the exposure period. Plasma nitrate, in contrast, rose continuously, reflecting detoxification of nitrite to nitrate. MetHb generated from the reaction between nitrite and erythrocyte Hb reached 38% at day 2, but then decreased to 17% by the end of experiment. The first order rate constant for metHb reduction by erythrocyte metHb reductase increased from 0.01 in controls to 0.046min^-1 after 6days of nitrite exposure, showing up-regulation of this enzyme. While such upregulation has been suggested in nitrite-exposed fish species, this study provides the first experimental evidence.

Karyotype description of the African weakly electric fish Campylomormyrus compressirostris in the context of chromosome evolution in Osteoglossiformes

Karyotyping is a basic method to investigate chromosomal evolution and genomic rearrangements. Sixteen genera within the basal teleost order Osteoglossiformes are currently described cytogenetically. Our study adds information to this chromosomal dataset by determining the karyotype of Campylomormyrus compressirostris, a genus of African weakly electric fish that has not been previously examined. Our results indicate a diploid chromosome number of 2n=48 (4sm+26m+18a) with a fundamental number of FN=72. This chromosome number is identical to the number documented for the sister taxon of the genus Campylomormyrus, i.e., Gnathonemus petersii (2n=48). These results support the close relationship of Campylomormyrus and Gnathonemus. However, the karyotype formula of C. compressirostris is different from Gnathonemus petersii, thereby confirming the high variability of karyotype formulae within the Mormyridae. We infer that the differences in chromosome number and formula of Campylomormyrus relative to other mormyrids may be caused by Robertsonian fusion and pericentric inversion. In addition to the karyotype description and classification of Campylomormyrus, a ChromEvol analysis was used to determine the ancestral haploid chromosome number of osteoglossiform taxa. Our results indicate a relatively conservative haploid chromosome number of n=24 for the most recent common ancestor of Osteoglossiformes and for most of the internal nodes of osteoglossiform phylogeny. Hence, we presume that the high chromosome variability evolved recently on multiple independent occasions. Furthermore, we suggest that the most likely ancestral chromosome number of Mormyridae is either n=24 or n=25. To the best of our knowledge this is the first attempt to determine and classify the karyotype of the weakly electric fish genus Campylomormyrus and to analyze chromosomal evolution within the Osteoglossiformes based on Maximum Likelihood and Bayesian Inference analyses.

Olfactory Sensory Neuron Morphotypes in the Featherback Fish, Notopterus notopterus (Osteoglossiformes: Notopteridae)

BACKGROUND

As in other vertebrates, olfactory sensory neurons (OSNs) in fishes are the main components of sensory part of olfactory epithelium that relay olfactory information (smell and taste) to the brain.

PURPOSE

Objective of the present study was to analyze if any polymorphism occurs in the OSNs in a featherback fish, Notopterus notopterus as far as the teleost lineage is concerned.

METHODS

With the help of neuronal staining technique, polymorphism of OSNs in N. notopterus was studied.

RESULTS

Three polymorphic forms of OSNs were identified which are ciliated OSNs, microvillus OSNs and crypt OSNs. These morphotypes were identified on the basis of location of their somata within the depth of olfactory epithelium and resulting length of their dendrites. The ciliated OSNs have basally situated somata and long, thin dendrites with a few apically arranged cilia while microvillous OSNs have somata located midway in the epithelium and thick moderate-length dendrites with microvilli. Third cell type is crypt OSNs which are spherical or pear-shaped, located apically just close to the epithelial surface having cilia and microvilli in an invagination and devoid of any dendrite.

CONCLUSION

N. notopterus belongs to order Osteoglossiformes which is a representative of an early evolutionary lineage of teleost fishes. OSN polymorphism reported in the present work indicates that it is a fairly conserved trait throughout the evolution of teleosts. To our knowledge, we are the first ones to report OSN polymorphism in a member of the order Osteoglossiformes.

The first transcriptome and genetic linkage map for Asian arowana

Asian arowana or dragonfish (Scleropages formosus) is an important fish species due to its unusual breeding biology and high economic value in the ornamental fish markets. In the present study, we aimed to (i) create the first transcriptome by Roche 454 pyrosequencing of Asian arowana brain and gonad samples; (ii) identify differentially expressed genes between the two sexes and develop microsatellite (SSR) markers; and (iii) construct a first-generation SSR-based genetic linkage map. A total of over 1.3 million reads were obtained from the brain and gonad of adult Asian arowana individuals through pyrosequencing. These reads were assembled into 16,242 contigs that were further grouped into 13,639 isogroups. BLASTX annotation identified a total of 8316 unique proteins from this data set. Many genes with sexually dimorphic expression levels and some putatively involved in sex development were identified. A total of 316 EST-SSRs and 356 new genomic-SSRs were developed by screening through the current transcriptome data set and SSR-enriched genomic libraries. The first genetic linkage map of the species was constructed based on these markers. Linkage analysis allowed for mapping of 308 markers to 28 linkage groups (LGs), ranging in size from 14.9 to 160.6 cM. The potentially sex-associated gene sox9 was mapped to LG4 on the consensus linkage map. Pairwise putative conserved syntenies between the Asian arowana, zebrafish, and three-spined stickleback were also established. These resources will help the conservation of the species through better understanding of its phylogenetics, genomics and biology, and comparative genome analysis within the Osteoglossidae family.

Genetic differentiation of a primitive teleost, the African bonytongue Heterotis niloticus, among river basins and within a floodplain river system in Benin, West Africa

Examination of eight microsatellite DNA loci revealed high levels of genetic differentiation among populations of the African bonytongue Heterotis niloticus from three river basins that constitute important fishing areas in Benin. Low levels of population genetic differentiation were detected within the Ouemé-Sô River floodplain system. These results have important implications for conservation and management of stocks supporting important inland fisheries in West Africa.