Anthropogenic-induced ecological risks on marine ecosystems indicated by characterizing emerging pollutants in Pearl River Estuary, China

Anthropogenic Contaminants of Emerging Concern (CECs) in marine environments have raised significant concerns. Yet, analyses detailing their origins, fate, and environmental effects are limited. This study employs an integrated non-target screening methodology to elucidate CECs existence across 46 sampling sites in the Pearl River Estuary (PRE) of the South China Sea. Assisted by advanced liquid chromatography-high resolution mass spectrometry, we discovered 208 chemicals in six usage categories, with pesticides (33 %) and pharmaceuticals (29 %) predominating. Several CECs drew attention for their consistent detections, profound abundance, and significant ecotoxicities. The wide detection of them at offshore sites further implies that anthropogenic activities may contribute to large-scale contamination. Meanwhile, distinct distribution patterns of CECs across PRE are evident in semi-quantitative results, indicating regional anthropogenic influences. Identified transformation products may establish a novel and non-negligible negative contribution to ecology through elevated environmental toxicities, exemplified by HMMM and atrazine. Based on the ecological risks, we compiled a prioritized list of 21 CECs warranting intensified scrutiny. Our findings indicate the introduction of various CECs into the South China Sea via PRE, emphasizing the urgent necessity for ongoing surveillance of discharged CECs at estuary areas and assessment of their marine ecological consequences.

Dissolved organic phosphorus promotes Cyclotella growth and adaptability in eutrophic tropical estuaries

Dissolved organic phosphorus (DOP) is an important nutrient for phytoplankton growth in oligotrophic oceans. However, little is known about the impact of DOP on phytoplankton growth in eutrophic waters. In the present study, we conducted field monitoring as well as in situ and laboratory experiments in the Pearl River estuary (PRE). Field observations showed an increase in the nitrogen-to-phosphorus ratio and DOP in recent years in the PRE. The phytoplankton community was dominated by nanophytoplankton Cyclotella in the upper and middle estuary, with high concentrations of DOP and light limitation during the ebb stage of the spring to neap tide in summer. The relative abundance of Cyclotella in natural waters was higher after enrichment with estuarine water with a background of 0.40-0.46 µM DOP, even when dissolved inorganic phosphorus was sufficient (0.55-0.76 µM). In addition, the relative abundance of Cyclotella in natural waters was higher after enrichment with phosphoesters. Laboratory culture results also confirmed that phosphoesters can enhance the growth rate of Cyclotella cryptica. Our study highlights that Cyclotella can become the dominant species in estuaries with increased levels of phosphoesters and low and fluctuating light adaptability and under the joint effect of dynamic processes such as upwelling and tides. Our results provide new insights into the role of Cyclotella in biogeochemical cycles affected by DOP utilization and potential applications in relieving the hypoxia of tropical eutrophic estuaries.IMPORTANCEThis study provides evidence that Cyclotella can become the dominant species in estuaries with increased levels of phosphoesters and low and fluctuating light adaptability and under the joint effect of dynamic processes such as upwelling and tides. Our study provides new insights into the role of Cyclotella in biogeochemical cycles affected by dissolved organic phosphorus utilization, especially affected by anthropogenic inputs and climate change. Potential applications include relieving the hypoxia of tropical eutrophic estuaries.

Multi-index assessment of heavy metal contamination in surface sediments of the Pearl River estuary intertidal zone

Surface sediments from 21 stations within the Pearl River estuary (PRE) intertidal zone were sampled for heavy metal contamination analysis. Average heavy metal concentrations (mg/kg) in the PRE intertidal zone were 118.5 (Cr), 860.4 (Mn), 19.5 (Co), 72.5 (Ni), 128.1 (Cu), 198.5 (Zn), and 73.0 (Pb), with the concentrations of Mn, Co, Ni, Cu, and Zn being significantly higher than their corresponding background values. The enrichment factor (EF) and geo-accumulation index (I_geo) reveal the same contamination status, with Pb, Ni, Co, Mn, and Cu showing slight to moderate contamination. Overall, the combined heavy metal concentration in the PRE intertidal surface sediments had a 24.7 % probability of toxic effects on aquatic biota based on the joint probabilistic risk (JPR) approach. Principal component analysis (PCA) coupled with the correlation analysis (CA) revealed that the heavy metal contamination in the PRE intertidal zone might originate from natural and anthropogenic sources.

Seasonal variation of temperature affects HMW-PAH accumulation in fishery species by bacterially mediated LMW-PAH degradation

Currently, the specific mechanism generating seasonal variation in polycyclic aromatic hydrocarbons (PAHs) via bacterial biodegradation remains unclear, and whether this alteration affects PAH bioaccumulation is unknown. Therefore, we performed a study between 2015 and 2020 to investigate the effects of seasonal variation on bacterial communities and PAH bioaccumulation in the Pearl River Estuary. Significantly high PAH concentrations in both aquatic and fishery species were determined in dry seasons (the mean ∑₁₆PAH concentration: water, 37.24 ng/L (2015), 30.83 ng/L (2020); fish, 51.01 ng/L (2015) and 72.60 ng/L (2020)) compared to wet seasons (the mean ∑₁₆PAH concentration: water, 22.38 ng/L (2015), 19.40 ng/L(2020); fish, 25.28 ng/L (2015) and 32.59 ng/L (2020)). Distinct differences in taxonomic and functional composition of bacterial communities related to biodegradation of low molecular weight PAHs (LMW-PAHs) were observed between seasons, and the concentrations of PAHs were negatively correlated with seasonal variation in temperature. Temperature-related specific bacterial taxa (e.g., Stenotrophomonas) directly or indirectly participated in LMW-PAH degradation via encoding PAH degradation enzymes (e.g., protocatechuate 4,5-dioxygenase) that subsequently led to bioaccumulation of high molecular weight PAHs (HMW-PAHs) in wild and fishery species due to LMW-PAHs in the water. Based on this alteration, the ecological risk posed by PAHs decreased in wet seasons, and an unbalanced spatio-temporal distribution of PAHs was observed in this estuary. These results suggest that seasonal variation of temperature affects HMW-PAH accumulation in fishery species via bacterially mediated LMW-PAH biodegradation.

Dynamics of trace metals with different size species in the Pearl River Estuary, Southern China

The Pearl River Estuary (PRE), the largest estuary in Southern China, regulates the fluxes of riverine trace metals into the South China Sea. However, the geochemical behavior of trace metals in this estuary is still ambiguous. In this study, we investigated the dynamics of trace metals in different phases (i.e., particulate, colloidal and truly dissolved) in the PRE in both wet and dry seasons characteristic of the region. Transformations of trace metals between particulate (>0.45 μm), colloidal (1 kDa to 0.45 μm) and truly dissolved (<1 kDa) phases were observed during the estuarine mixing. Colloidal metals (except for Pb) showed non-conservative 'removal' behavior in the low-salinity zone (S < 10‰), suggesting the coagulation of colloidal metals and subsequent deposition to bed sediments being an important sink of dissolved trace metals. By contrast, truly dissolved metals exhibited a mid-salinity maximum distribution (i.e., Mn, Ni, Cu and Cd) or little variation along the salinity gradient (i.e., Fe). The increase of truly dissolved metal concentration was accompanied by the decrease of particulate metal concentration, indicating that the desorption of suspended particles was an important source of dissolved Mn and Cd in the PRE. Metal released from the suspended particles increased in the dry season due to the high suspended particulate matter concentration. Dissolved Mn concentration in the bottom water in wet season was higher than that in dry season, implying that benthic Mn input increased as the bottom water became hypoxic. Abnormally high concentrations of particulate and dissolved Pb were observed at the lower PRE, implying the presence of a potential point source pollution. A flux model predicted that total dissolved Fe, Ni, Cu and Zn underwent net removal while dissolved Mn and Cd had net inputs during the estuarine mixing. This study raveled contrasting geochemical behaviors of trace metals with different size phases and the different sources and sinks of dissolved metals in the PRE.

Bio- and photo-lability of dissolved organic matter in the Pearl River (Zhujiang) estuary

We investigated the bio- and photo-lability of dissolved organic matter (DOM) from the head, mixing zone, and mouth of the Pearl River estuary. At all three sites, bio- and photo-refractory dissolved organic carbon (DOC) and biorefractory chromophoric DOM (CDOM) dominated over the corresponding bio- and photo-labile constituents, while photolabile CDOM dominated over photo-refractory CDOM. Relative to the mixing-zone and mouth waters, the headwater was enriched with bio- and photo-labile DOC and photolabile CDOM and depleted with biolabile CDOM. Biolabile DOC was richer than photolabile DOC in the headwater, while photolabile CDOM was richer than biolabile CDOM at all three sites. Pre-biotransformation inhibited, stimulated, or had little impact on DOM photodegradation, depending on site. Ultra-violet absorption coefficients are indicators of bio- and photo-refractory DOC. The relative proportions of transparent and chromophoric DOM control the turnover of biolabile DOC and the effect of pre-biotransformation on DOM photodegradation.

Polycyclic Aromatic Hydrocarbons (PAHs) in the intertidal sediments of Pearl River Estuary: Characterization, source diagnostics, and ecological risk assessment

The surface intertidal sediments in the Pearl River Estuary of China were analyzed from multiple perspectives, including the distribution characteristics, potential sources, and biological risks of polycyclic aromatic hydrocarbons (PAHs). The average concentration of PAHs, ranging from 73.68 ng/g to 933.25 ng/g, was 346.78 ng/g. PAHs are mainly composed of the 2- and 3-ring PAHs, with naphthalene (Nap), phenanthrene (Phe), pyrene (Pyr), benzo(g,h, i) perylene (Dib), fluoranthene (Flua), and indeno (1,2,3-c,d) pyrene (Ind) as the dominant constituents. The principal component analysis combined with multiple linear regression showed that petroleum combustion and biomass/coal combustion have contributed 52.78% and 40.53%, respectively, to the PAHs in intertidal sediments of Pearl River Estuary. The occurrence of adverse biological effects as a result of PAH contamination in the intertidal sediments of Pearl River Estuary has increased by 8% based on the mean value of the probable effect quotient.

nov., a novel bacterium isolated from Pearl River estuary

A novel species of the genus Roseomonas, designated SYSU M41301T, was isolated from water sample of the Pearl River estuary in Guangdong, China. Polyphasic, taxonomic and phylogenomic analyses were used to determine the taxonomy position of the strain. Phylogenetic analysis using 16S rRNA gene sequence indicated that strain SYSU M41301T showed the highest sequence similarity to Roseomonas stagni KCTC 22213T (97.9 %) and Roseomonas riguiloci KCTC 23339T (96.4 %). The novel species could be differentiated from other species of the genus Roseomonas by its distinct phenotypic and genotypic characteristics. The isolate was Gram-staining-negative, aerobic, short rod-shape, oxidase-positive and non-motile. The predominant respiratory quinone was ubiquinone 8 (Q-8). The major polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, and one unidentified polar lipid. The major fatty acids (>10 % of total) were 11-methyl C18 : 1  ω7c, summed feature 3 (C16 : 1  ω7c and/ or C16 : 1  ω6c) and summed feature 8 (C18:  :1  ω7c and/or C18 : 1  ω6c). The G+C content of the novel isolate based on genomic DNA was 72.0 mol%. On the basis of phenotypic, genotypic and phylogenetic data, strain SYSU M41301T should be considered to represent a novel species in the genus Roseomonas, for which the name Roseomonas ponticola sp. nov. is proposed with the type strain SYSU M41301T (=KCTC 72726T=CGMCC 1.18613T).

Degradation and Aging of Terrestrial Organic Carbon within Estuaries: Biogeochemical and Environmental Implications

Estuaries are action zones for organic carbon (OC) degradation and aging. These processes influence the nature of terrestrial OC (OC_terr) export and the magnitude of OC_terr burial in marginal seas, with important environmental implications such as CO₂ release and hypoxia. In this study, we determined the contents and carbon isotopic compositions (¹³C and ¹⁴C) of bulk OC and fatty acids (FAs) as well as the sedimentological characteristics of suspended particulate matter (SPM) samples collected from two sites over four seasons and of surface sediment samples from three sites in the Pearl River estuary (PRE) to evaluate processes controlling OC_terr degradation and aging along an estuarine gradient. We found that the abundance-weighted average C_24-32FA ¹⁴C ages increased by an average of ∼1170 years for SPM and by an average of ∼3440 years in PR/PRE sediments, along the ∼60 km PRE transect. These increases in the FA age coincided with an 86% decrease in the corresponding mineral surface area-normalized FA loading along the sediment transport pathway, implying that selective degradation of labile and younger OC resulted in apparent OC aging. These measurements reveal an important shift in the nature of OC, with implications for biogeochemical cycling within estuaries and for regional environmental changes.

Morphological consequences of upstream water and sediment changes and estuarine engineering activities in Pearl River Estuary channels over the last 50 years

The relative contributions of decreased upstream sediment loads and local estuarine engineering activities to the estuarine channel geometry are poorly understood. In this study, we analyze the hydrological changes and identify the location, duration and intensity of the estuarine engineering activities based on the channel morphologic changes from 1965 to 2017 at the five stations in the Pearl River Estuary. Thereafter, the Mann-Kendall (M-K) statistical test, empirical orthogonal function (EOF) tests, and channel geometry reconstruction based on the hydrological coefficient were performed to quantitatively estimate the relative contributions from upstream dam construction and estuarine engineering activities. The results show that the geometric changes in the five transects over the last 50 years could be divided into three stages. Stage I extends over approximately 23-33 years at the different channel transects, during which the channel geometries were mainly influenced by natural factors, with a balance between erosion and deposition. Stage II occurred during the next 11-20 years and the changes in the cumulated water depth in comparison to the values in the previous adjacent years at this stage are approximately 5-25 times the values in stage I. The human activities (e.g., sand excavation) contribute to >70-90% of the extreme geometric changes. Stage III lasted for <3-11 years in the different transects with a slight depositional trend, and policies regulating sand excavation were implemented during this stage. The rapid increase in the channel area and water depth caused by sand excavation can cause the downcutting of the riverbed, a decrease in the water level, and redistribution of the water and sediment discharge. Therefore, the monitoring, simulation and analysis of the variation in the typical channel geometry over the long term provide important means to understand the human activities occurring and insights for future sustainable estuarine management.

The communities and functional profiles of virioplankton along a salinity gradient in a subtropical estuary

Viruses are the major drivers shaping microorganismal communities, and impact marine biogeochemical cycling. They are affected by various environmental parameters, such as salinity. Although the spatiotemporal distribution and dynamics of virioplankton have been extensively studied in saline environments, few detailed studies of community structure and function of viruses along salinity gradients have been conducted. Here, we used the 16S and 18S rRNA gene amplicon and metagenomic sequencing from a subtropical estuary (Pearl River Estuary, PRE; located in Shenzhen, Guangdong Province, China) to explore how viral community composition and function vary along a salinity gradient. Results showed that the detected viruses were mainly bacteriophages. The double-stranded DNA viruses were the most abundant (especially Siphoviridae, Myoviridae, Mimiviridae, Phycodnaviridae, and Podoviridae), followed by a small number of single-stranded DNA (Circoviridae) and RNA (Retroviridae) viruses. Viral biodiversity significantly declined and community structure varied greatly along the salinity gradient. The salinity, ammonium and dissolved oxygen were dominated factors influencing the community composition of viruses. Association network analysis showed that viruses had a negative effect on multiple host taxa (prokaryotic and eukaryotic species). Metagenomic data revealed that the main viral functional potential was involved in organic matter metabolism by carbohydrate-active enzymes (CAZymes). Deeper comparative functional analyses showed that viruses in the low-salinity environment had more carbohydrate-binding module and glycosidase hydrolases activities than those under high-salinity conditions. However, an opposite pattern was observed for carbohydrate esterases. These results suggest that virus-encoded CAZyme genes may alter the bacterial metabolism in estuaries. Overall, our results demonstrate that there is a spatial heterogeneity in the composition and function of virioplankton along a salinity gradient. This study enhances our understanding of viral distribution and their contribution to regulating carbon degradation throughout environments with varying salinities in subtropical estuaries.

Differences in metabolic potential between particle-associated and free-living bacteria along Pearl River Estuary

Particulate organic matter (POM) in aquatic ecosystem is critical for biogeochemical cycling and host distinct communities of microbes, compared to its surrounding water. In this study, the structures and functional potentials of microbial communities associated with particles or free-living in water samples from the Pearl River Estuary were investigated using 16S rRNA gene sequencing and GeoChip 5.0 analysis. Significant differences in the community structure and genetic functional potentials between particle-associated bacteria and free-living bacteria were observed across all eight sampling sites. In particle-associated bacteria communities, Rhodobacteraceae and Flavobacteriaceae were more abundant, while SAR11 clade and SAR86 clade were the most abundant in free-living bacteria communities. The richness and abundance of functional genes involved in nutrient cycling and stress response, including carbon degradation, nitrogen fixation, DMSP degradation, and polyphosphate degradation, were much higher in particle-associated bacteria compared with free-living bacteria. Thus, the particle-associated bacteria seem to play a much more important role in the biogeochemical cycles than free-living bacteria. In conclusion, the results from this study highlight the central role played by particle-associated bacteria in structuring microbial assemblages, and their importance for mediating biogeochemical cycling in the estuarine ecosystem.

Microplastics in mangrove sediments of the Pearl River Estuary, South China: Correlation with halogenated flame retardants' levels

Marine microplastic pollution of intertidal mangrove ecosystem is a matter of concern. However, the relationship between microplastic distribution and other pollutants such as halogenated flame retardants (HFRs) is unknown. In this study, forty-eight sediment samples were collected from three mangrove wetlands of the Pearl River Estuary (PRE), South China to investigate the distribution of microplastic and discuss the possible relationship between HFRs and microplastic abundance in mangrove sediments. The abundance of microplastic in mangrove sediments from the PRE ranged from 100 to 7900 items·kg^-1 dry weight (dw), with an average of 851 ± 177 items·kg^-1 dw, which was at a relatively higher level compared to other regions worldwide. The highest abundance of microplastic was observed in Shenzhen mangrove sediments. The abundance of microplastic was significantly and positively correlated with population density and gross domestic product of the PRE. The microplastics with size <500 μm were predominant in mangrove sediments, accounting for a proportion of 69.4% in all microplastic samples. Polypropylene-polyethylene copolymer, green/black, and fibers/fragments were the dominant type, color and shape in all microplastic samples, respectively. The correlation between HFRs and microplastic abundance demonstrated that polybrominated diphenyl ethers, decabromodiphenyl ethane, 1,2-bis(2,4,6-tribromophenoxy)ethane and hexabromocyclododecane may have the same pollution source as microplastics.

The Distribution of Bathyarchaeota in Surface Sediments of the Pearl River Estuary Along Salinity Gradient

Bathyarchaeota, a recently proposed archaeal phylum, is globally distributed and highly abundant in anoxic sediments. Metabolic pathways of the Bathyarchaeota members are diverse and, hence, this phylum has been proposed to play an important role in global biogeochemical cycles. Bathyarchaeota members are distributed in the estuarine environments. However, limited information is available about their detailed community structure, abundance, and functions in the Pearl River estuary (PRE). In the current study, we performed a comprehensive investigation of the archaeal community in the PRE surface sediments along a salinity gradient, with a focus on Bathyarchaeota. Bathyarchaeota was the dominant archaeal phylum, with the abundance of the bathyarchaeotal 16S rRNA gene ranging from 1.43 × 108 to 1.22 × 109 copies/g sediment dry weight (d.w.), and Bathy-8 was the dominant subgroup. Thaumarchaeota, Lokiarchaeota, and Euryarchaeota, including Thermoprofundales (MBG-D archaea), were the other major archaeal groups in the PRE. The differences of community distributions in the high- and low-salinity sediments were hence investigated. Statistical analysis revealed that besides salinity, ammonium, and total organic carbon were the most important environmental factors influencing the archaea community structure, including that of Bathyarchaeota, in the PRE. The archaeal network indicated the cooccurrence among Bathyarchaeota, Lokiarchaeota, and Euryarchaeota, while Bathy-6 presented unique correlations compared with other bathyarchaeotal subgroups. These observations indicate that Bathyarchaeota may play a role in ecosystem function through microbe-microbe interactions, revealing a possible different lifestyle for Bathy-6 in eutrophic estuarine sediments.

Low dissolved oxygen in the Pearl River estuary in summer: Long-term spatio-temporal patterns, trends, and regulating factors

Several large semi-enclosed seas and coastal bodies have formed seasonal hypoxic water masses over large areas. The dominant cause for such formations is believed to be the increasing inflow of nutrients from watersheds and urban areas into estuaries and coastal waters. Several studies have reported hypoxic events in the Pearl River estuary (PRE). However, hypoxia events appear to be episodic, which are neither seasonal nor estuary-wide. The reasons for such occurrences are not understood fully. The objectives of this study are to use 24-year time series data obtained during 1988-2011 to analyze the long-term variability in dissolved oxygen (DO) in summer over the entire estuary from urban areas to estuarine coastal waters and examine regulating factors for the occurrences of hypoxia. The results showed that various regulating factors were responsible for the variability of DO in different regions of the PRE. DO decreased in the urban reach, upstream and main estuarine zones of the PRE from about 2000. It was hypoxic (DO <2.0 mg L^-1) in the urban reach zone and periodic low DO (DO <3.5 mg L^-1) and episodic hypoxic in the upstream zone after 2000, mainly influenced by the increasing sewage discharge. The main estuarine zone experienced episodic low DO and sporadic hypoxia after 2000. The ecosystem buffering capacity was characterized by turbidity, well vertical mixing and short residence time which diluted the pressure for the formation of hypoxia. The eastern shelf appeared to be more vulnerable to hypoxia because of its deeper topography, plume front position, and stratification of the water column compared with the western shelf. Its bottom waters experienced seasonal low DO but seldom hypoxia. In comparison, low DO rarely occurred in the western shelf because of its shallow topography and short residence time. In brief, 24-year series data captured from 1988 to 2011 showed a lack of seasonal and estuary-wide hypoxia in the PRE.

Impacts of Freshwater and Seawater Mixing on the Production and Decay of Virioplankton in a Subtropical Estuary

Virioplankton is an important component of the aquatic ecosystem and plays multiple ecological and biogeochemical roles. Although the spatial and temporal distributions and dynamics of virioplankton have been well investigated in riverine and marine environments, little is known about the dynamics and environmental controlling mechanisms of virioplankton in estuaries. In this study, viral abundance, production and decay were examined in the Pearl River Estuary (PRE), one of the largest estuaries in China. The influences of freshwater and seawater mixing on viral ecological dynamics were evaluated with several cross-transplant experiments. In PRE, viral abundance, production and decay rates varied from 2.72 ± 0.09 to 27.5 ± 1.07 × 10⁶ viruses ml^-1, 7.98 ± 2.33 to 16.27 ± 2.85% h^-1 and 0.80 ± 0.23 to 3.74 ± 0.98% h^-1, respectively. When the riverine and marine microbial community were transferred into simulated brackish water, viral production rates were markedly inhibited by 83.8% and 47.3%, respectively. The decay of riverine and marine virioplankton was inhibited by 21.1% and 34.2%, respectively, in simulated brackish water. These results indicate change of estuarine environmental factors significantly alters the dynamics of riverine and marine virioplankton. In addition, the effects of mixing on viral production and decay differed between high- and low-fluorescence viruses. High-fluorescence viruses seemed more resistant to decay than low-fluorescence viruses, whereas the production of marine low-fluorescence viruses seemed more resistant to inhibition than that of marine high-fluorescence viruses. Together, these results provide new insights into the ecological dynamics of virioplankton in estuarine environments.

Microplastic abundance, distribution and composition in the Pearl River along Guangzhou city and Pearl River estuary, China

Like many urban rivers, the Pearl River in China is contaminated with microplastics. Compared with marine environments, microplastic pollution in freshwater is less understood, especially in urban rivers. In the present study, the abundance and distribution of microplastics in water from the Pearl River was investigated, including the estuary and the urban section along Guangzhou. The average abundance of microplastics was 19,860 items/m³ and 8902 items/m³ in the urban section and estuary, respectively. Wastewater effluents from cities might be a main source of microplastics in the Pearl River, and the urban tributaries might act as retention systems for microplastics. Among these microplastics, over 80% of them were less than 0.5 mm. The main shapes of microplastics were film, fragment, and fiber, mostly blue or transparent. Moreover, the most common polymer types of these microplastics were polyamide (26.2%) and cellophane (23.1%). This study reveals the contamination and characteristics of microplastics in the Pearl River, and provides important data for further research on microplastics in freshwater ecosystems.

Aestuariivirga litoralis gen. nov., sp. nov., a proteobacterium isolated from a water sample, and proposal of Aestuariivirgaceae fam. nov

A Gram-stain-negative, non-motile, short rod and aerobic bacterium, designated strain SYSU M10001^T, was isolated from a water sample collected from the coastal region of Pearl River Estuary, Guangdong Province, PR China. Strain SYSU M10001^T showed optimal growth at 28 °C, pH 7.0 and in the absence of NaCl. Phylogenetic analyses based on 16S rRNA gene sequences and concatenation of 20 protein markers revealed a distinct lineage for strain SYSU M10001^T in the order Rhizobiales. Strain SYSU M10001^T showed highest 16S rRNA gene sequence similarities to Hyphomicrobium nitrativorans NL23^T (91.1 %) and Hyphomicrobium hollandicum IFAM KB-677^T (91.1 %). The respiratory ubiquinone was Q-8. The polar lipids of the strain comprised diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, an unidentified aminophospholipid, two unidentified phospholipids and three unidentified lipids. The predominant cellular fatty acids identified were C19 : 0cyclo ω8c, summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c) and C16 : 0. The G+C content was determined to be 65.5 % (genome). On the basis of differences in the phenotypic, physiological and biochemical characteristics, and results of the phylogenetic analyses, strain SYSU M10001^T is proposed to represent a novel species in a novel genus for which the name Aestuariivirga litoralis gen. nov., sp. nov. The type strain of the type species Aestuariivirga litoralis is SYSU M10001^T (=NBRC 112960^T=KCTC 52945^T). Besides, the distinct phylogenetic lineage and the distinct chemotaxonomic profile among the families in the order Rhizobiales indicated that strain SYSU M10001^T should represent a new family for which the name Aestuariivirgaceae fam. nov. is proposed.

Discordance Between Resident and Active Bacterioplankton in Free-Living and Particle-Associated Communities in Estuary Ecosystem

Bacterioplankton are the major driving force for biogeochemical cycles in estuarine ecosystems, but the communities that mediate these processes are largely unexplored. We sampled in the Pearl River Estuary (PRE) to examine potential differences in the taxonomic composition of resident (DNA-based) and active (RNA-based) bacterioplankton communities in free-living and particle-associated fractions. MiSeq sequencing data showed that the overall bacterial diversity in particle-associated fractions was higher than in free-living communities. Further in-depth analyses of the sequences revealed a positive correlation between resident and active bacterioplankton communities for the particle-associated fraction but not in the free-living fraction. However, a large overlapping of OTUs between free-living and particle-associated communities in PRE suggested that the two fractions may be actively exchanged. We also observed that the positive correlation between resident and active communities is more prominent among the abundant OTUs (relative abundance > 0.2%). Further, the results from the present study indicated that low-abundance bacterioplankton make an important contribution towards the metabolic activity in PRE.

Subsurface low dissolved oxygen occurred at fresh- and saline-water intersection of the Pearl River estuary during the summer period

Estuarine oxygen depletion is one of the worldwide problems, which is caused by the freshwater-input-derived severe stratification and high nutrients loading. In this study we presented the horizontal and vertical distributions of dissolved oxygen (DO) in the Pearl River estuary, together with temperature, salinity, chlorophyll a concentration and heterotrophic bacteria abundance obtained from two cruises during the summer (wet) and winter (dry) periods of 2015. In surface water, the DO level in the summer period was lower and varied greater, as compared to the winter period. The DO remained unsaturated in the summer period if salinity is <12 and saturated if salinity is >12; while in the winter period it remained saturated throughout the estuary. In subsurface (>5m) water, the DO level varied from 0.71 to 6.65mgL^-1 and from 6.58 to 8.20mgL^-1 in the summer and winter periods, respectively. Particularly, we observed an area of ~1500km² low DO zone in the subsurface water with a threshold of 4mgDOL^-1 during this summer period, that located at the fresh- and saline-water intersection where is characterized with severe stratification and high heterotrophic bacteria abundance. In addition, our results indicate that spatial DO variability in surface water was contributed differently by biological and physio-chemical variables in the summer and winter periods, respectively.

Correlation of trace element concentrations between epidermis and internal organ tissues in Indo-Pacific humpback dolphins (Sousa chinensis)

Trace element accumulation in the epidermis of cetaceans has been less studied. This study explored the feasibility of using epidermis as a surrogate tissue to evaluate internal contaminant burdens in Indo-Pacific humpback dolphin (Sousa chinensis). Eleven trace elements were analyzed in the epidermis, muscle and liver tissues from 46 individuals of dolphins stranded along the Pearl River Estuary (PRE) coast between 2007 and 2013. Trace elemental concentrations varied among the three tissues, generally with the highest concentrations found in liver tissues and lowest in the epidermis (except Zn, As, and Pb). Zn concentration in the epidermis was the highest among all tissues, indicating that Zn could be an important element for the epidermis physiology. High concentrations of Hg and Cr in liver were likely due to an excessive intake by dolphins which consumed high Hg and Cr contaminated fishes in the PRE. Hg concentrations in epidermis and muscle tissues were significantly higher in the females than in males. Concentrations of V and Pb in liver, Se and Cd in both muscle and liver, and As and Hg in all tissue samples showed significantly positive relationships with body length. Hepatic Cu concentrations were significantly negatively correlated with the body length. Hg and As concentrations in epidermis showed significantly positive correlations with those in liver tissues. Thus this study proposed that epidermis could be used as a non-invasive monitoring tissue to evaluate Hg and As bioaccumulation in internal tissues of Indo-Pacific humpback dolphins populations.

Distribution and ecological risk assessment of heavy metals in surface sediments of a typical restored mangrove-aquaculture wetland in Shenzhen, China

The restoration of wetlands has attracted the attention in different countries. Restored coastal wetlands, especially urban wetlands, are sensitive to external pressures. Thus, it is necessary to evaluate the efficiency of the restoration of coastal wetlands, which benefits their management and functional maintenance. In this study, a restored mangrove-aquaculture system in Waterlands Resort at Shenzhen was selected for analysis. The distribution and ecological risk assessment of heavy metals in surface sediments were investigated. The results showed that restoration could effectively decrease the heavy metal concentrations in the sediment, while the restored mangrove posed a moderate ecological risk. Most of the heavy metal concentrations were higher during the dry season compared with the wet season. In addition, during the whole investigation, the sediment quality remained failed to achieve the marine sediment criteria required for aquaculture in China.

Seasonal changes of polycyclic aromatic hydrocarbons in response to hydrology and anthropogenic activities in the Pearl River estuary, China

The behaviours of PAHs (containing 2-6 aromatic rings) in the Pearl River estuary were examined each month in 2011. This study was designed to investigate the abundance of 16 priority PAHs and their response to the seasonal dynamics of anthropogenic activities and hydrological cycles. Monthly mean concentrations of ∑₁₆PAHs in water and suspended particulate matter (SPM) were 88.31ng/L and 252.31ng/L respectively, with higher concentrations in the wet season (April to September). Heavy precipitation in the wet season resulted in relatively increased PAH input via riverine discharges and atmospheric deposition. Seasonal variations in suspended sediment concentration (SSC), temperature and salinity have considerably affected the PAH phase association. Higher SSC in the wet season contributed to higher concentration of the PAHs in SPM, and higher temperature and lower salinity facilitated desorption from SPM. The PAH sources were largely attributed to vehicular emissions, coal combustion and coke ovens.

Occurrence and distribution of synthetic musks and organic UV filters from riverine and coastal sediments in the Pearl River estuary of China

This study reports the occurrence and distribution of synthetic musks (SMs) and organic UV filters (UVFs) in sediment samples collected in 8 riverine runoffs from the Pearl River and Pearl River estuary (PRE). Here, 6 of the 8 target compounds were detected in all sediments with concentrations ranging from 0.35ngg(-1) to 456ngg(-1). Higher concentrations of SMs and UVFs were evident in the eastern outlets compared to the western suggesting greater input of these contaminants from the Pearl River Delta (PRD) region. All the compounds showed a decreasing trend toward the seaward side which confirming that riverine runoff was the most important source of SMs and UVFs to the coastal environment. Notably, high levels of SMs and UVFs were detected in two fishing harbors in the PRE area. In comparison to UVFs, the SM compounds exhibited a significant correlation with TOC content in the sediments.