1
|
Almeida AJD, Hobson BA, Saito N, Bruun DA, Porter VA, Harvey DJ, Garbow JR, Chaudhari AJ, Lein PJ. Quantitative T 2 mapping-based longitudinal assessment of brain injury and therapeutic rescue in the rat following acute organophosphate intoxication. Neuropharmacology 2024; 249:109895. [PMID: 38437913 DOI: 10.1016/j.neuropharm.2024.109895] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2023] [Revised: 02/07/2024] [Accepted: 02/29/2024] [Indexed: 03/06/2024]
Abstract
Acute intoxication with organophosphate (OP) cholinesterase inhibitors poses a significant public health risk. While currently approved medical countermeasures can improve survival rates, they often fail to prevent chronic neurological damage. Therefore, there is need to develop effective therapies and quantitative metrics for assessing OP-induced brain injury and its rescue by these therapies. In this study we used a rat model of acute intoxication with the OP, diisopropylfluorophosphate (DFP), to test the hypothesis that T2 measures obtained from brain magnetic resonance imaging (MRI) scans provide quantitative metrics of brain injury and therapeutic efficacy. Adult male Sprague Dawley rats were imaged on a 7T MRI scanner at 3, 7 and 28 days post-exposure to DFP or vehicle (VEH) with or without treatment with the standard of care antiseizure drug, midazolam (MDZ); a novel antiseizure medication, allopregnanolone (ALLO); or combination therapy with MDZ and ALLO (DUO). Our results show that mean T2 values in DFP-exposed animals were: (1) higher than VEH in all volumes of interest (VOIs) at day 3; (2) decreased with time; and (3) decreased in the thalamus at day 28. Treatment with ALLO or DUO, but not MDZ alone, significantly decreased mean T2 values relative to untreated DFP animals in the piriform cortex at day 3. On day 28, the DUO group showed the most favorable T2 characteristics. This study supports the utility of T2 mapping for longitudinally monitoring brain injury and highlights the therapeutic potential of ALLO as an adjunct therapy to mitigate chronic morbidity associated with acute OP intoxication.
Collapse
Affiliation(s)
- Alita Jesal D Almeida
- Department of Biomedical Engineering, University of California-Davis College of Engineering, Davis, CA, 95616, USA; Department of Radiology, University of California-Davis School of Medicine, Sacramento, CA, 95817, USA.
| | - Brad A Hobson
- Center for Molecular and Genomic Imaging, Department of Biomedical Engineering, University of California-Davis College of Engineering, Davis, CA, 95616, USA.
| | - Naomi Saito
- Department of Public Health Sciences, University of California-Davis School of Medicine, Davis, CA, 95616, USA
| | - Donald A Bruun
- Department of Molecular Biosciences, University of California-Davis School of Veterinary Medicine, Davis, CA, 95616, USA.
| | - Valerie A Porter
- Department of Biomedical Engineering, University of California-Davis College of Engineering, Davis, CA, 95616, USA; Department of Radiology, University of California-Davis School of Medicine, Sacramento, CA, 95817, USA.
| | - Danielle J Harvey
- Department of Public Health Sciences, University of California-Davis School of Medicine, Davis, CA, 95616, USA.
| | - Joel R Garbow
- Department of Radiology, Washington University School of Medicine, St Louis, MO, 63110, USA.
| | - Abhijit J Chaudhari
- Department of Radiology, University of California-Davis School of Medicine, Sacramento, CA, 95817, USA; Center for Molecular and Genomic Imaging, Department of Biomedical Engineering, University of California-Davis College of Engineering, Davis, CA, 95616, USA.
| | - Pamela J Lein
- Department of Molecular Biosciences, University of California-Davis School of Veterinary Medicine, Davis, CA, 95616, USA.
| |
Collapse
|
2
|
Elsaid NMH, Dispenza NL, Hu C, Peters DC, Constable RT, Tagare HD, Galiana G. Constrained alternating minimization for parameter mapping (CAMP). Magn Reson Imaging 2024; 110:176-183. [PMID: 38657714 DOI: 10.1016/j.mri.2024.04.029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2024] [Revised: 04/03/2024] [Accepted: 04/22/2024] [Indexed: 04/26/2024]
Abstract
OBJECTIVE To improve image quality in highly accelerated parameter mapping by incorporating a linear constraint that relates consecutive images. APPROACH In multi-echo T1 or T2 mapping, scan time is often shortened by acquiring undersampled but complementary measures of k-space at each TE or TI. However, residual undersampling artifacts from the individual images can then degrade the quality of the final parameter maps. In this work, a new reconstruction method, dubbed Constrained Alternating Minimization for Parameter mapping (CAMP), is introduced. This method simultaneously extracts T2 or T1* maps in addition to an image for each TE or TI from accelerated datasets, leveraging the constraints of the decay to improve the reconstructed image quality. The model enforces exponential decay through a linear constraint, resulting in a biconvex objective function that lends itself to alternating minimization. The method was tested in four in vivo volunteer experiments and validated in phantom studies and healthy subjects, using T2 and T1 mapping, with accelerations of up to 12. MAIN RESULTS CAMP is demonstrated for accelerated radial and Cartesian acquisitions in T2 and T1 mapping. The method is even applied to generate an entire T2 weighted image series from a single TSE dataset, despite the blockwise k-space sampling at each echo time. Experimental undersampled phantom and in vivo results processed with CAMP exhibit reduced artifacts without introducing bias. SIGNIFICANCE For a wide array of applications, CAMP linearizes the model cost function without sacrificing model accuracy so that the well-conditioned and highly efficient reconstruction algorithm improves the image quality of accelerated parameter maps.
Collapse
Affiliation(s)
- Nahla M H Elsaid
- Department of Radiology and Biomedical Imaging, Yale School of Medicine, USA
| | - Nadine L Dispenza
- Siemens Healthcare GmbH Allee am Röthelheimpark, Erlangen 91052, Germany; Department of Biomedical Engineering, Yale University, New Haven, CT, USA
| | - Chenxi Hu
- The Institute of Medical Imaging Technology, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, China
| | - Dana C Peters
- Department of Radiology and Biomedical Imaging, Yale School of Medicine, USA; Department of Biomedical Engineering, Yale University, New Haven, CT, USA
| | - R Todd Constable
- Department of Radiology and Biomedical Imaging, Yale School of Medicine, USA; Department of Neurosurgery, Yale University, New Haven, CT 06520, USA
| | - Hemant D Tagare
- Department of Radiology and Biomedical Imaging, Yale School of Medicine, USA; Department of Biomedical Engineering, Yale University, New Haven, CT, USA
| | - Gigi Galiana
- Department of Radiology and Biomedical Imaging, Yale School of Medicine, USA; Department of Biomedical Engineering, Yale University, New Haven, CT, USA
| |
Collapse
|
3
|
Li B, Ding Z, She H. Fast T 2 mapping of short-T 2 tissues in knee using 3D radial dual-echo balanced steady-state free precession. Magn Reson Imaging 2024; 107:149-159. [PMID: 38278310 DOI: 10.1016/j.mri.2024.01.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Revised: 12/26/2023] [Accepted: 01/22/2024] [Indexed: 01/28/2024]
Abstract
BACKGROUND T2 mapping of short-T2 tissues in the knee (meniscus, tendon, and ligament) is needed to aid the clinical MRI knee diagnosis, which is hard to realize using traditional clinical methods. PURPOSE To accelerate the acquisition of T2 values for short-T2 tissues in the knee by analyzing the signal equation of balanced steady-state free precession (bSSFP) sequence in MRI. METHODS Effect of half-radial acquisition on pixel bandwidth was analyzed mathematically. A modified 3D radial dual-echo bSSFP sequence was proposed for 0.53 mm isotropic resolution knee imaging with 2 different TEs at 3 T, which alleviated the problem of off-resonance artifacts caused by traditional half-radial acquisition scheme. A novel pixel-based optimization method was proposed for efficient T2 mapping of short-T2 tissues in the knee given off-resonance values. Simulation was conducted to evaluate the sensitivity of the proposed method to other parameters. Phantom results were compared with 2D spin-echo (SE), and in vivo results were compared with SE and previously studies. RESULTS Simulation showed that the proposed method is insensitive to T1 and B1 variations (estimation error < 1% for T1/B1 error of ±90%), avoiding the need for separated T1 and B1 scans. High isotropic resolution knee imaging was achieved using the modified dual-echo bSSFP. The total scan time was within 3.5 min, including a separate off-resonance scan for T2 measurement. Measured mean T2 values for phantoms correlated well with SE (R2 = 0.99), and no significant difference was observed (P = 0.45). In vivo meniscus T2 measurements and ligament T2 measurements agreed with the literature, while tendon T2 measurements were much lower (31.7% lower for patellar tendon, and 13.5% lower for quadriceps tendon), which might result in its bi-component property. CONCLUSIONS The proposed method provides an efficient way for fast, robust, high-resolution imaging and T2 mapping of short-T2 tissues in the knee.
Collapse
Affiliation(s)
- Bowen Li
- School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, China
| | - Zekang Ding
- School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, China
| | - Huajun She
- School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, China.
| |
Collapse
|
4
|
Eck BL, Seiberlich N, Flamm SD, Hamilton JI, Suresh A, Kumar Y, Hanna M, Houston A, Tew D, Tang WHW, Kwon DH. Characterization of cardiac amyloidosis using cardiac magnetic resonance fingerprinting. Int J Cardiol 2022; 351:107-110. [PMID: 34963645 PMCID: PMC8857016 DOI: 10.1016/j.ijcard.2021.12.038] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/04/2021] [Revised: 11/26/2021] [Accepted: 12/20/2021] [Indexed: 11/29/2022]
Abstract
BACKGROUND Cardiac amyloidosis (CA) is an infiltrative cardiomyopathy with poor prognosis absent appropriate treatment. Elevated native myocardial T1 and T2 have been reported for CA, and tissue characterization by cardiac MRI may expedite diagnosis and treatment. Cardiac Magnetic Resonance Fingerprinting (cMRF) has the potential to enable tissue characterization for CA through rapid, simultaneous T1 and T2 mapping. Furthermore, cMRF signal timecourses may provide additional information beyond myocardial T1 and T2. METHODS Nine CA patients and five controls were scanned at 3 T using a prospectively gated cMRF acquisition. Two cMRF-based analysis approaches were examined: (1) relaxometric-based linear discriminant analysis (LDA) using native T1 and T2, and (2) signal timecourse-based LDA. The Fisher coefficient was used to compare the separability of patient and control groups from both approaches. Leave-two-out cross-validation was employed to evaluate the classification error rates of both approaches. RESULTS Elevated myocardial T1 and T2 was observed in patients vs controls (T1: 1395 ± 121 vs 1240 ± 36.4 ms, p < 0.05; T2: 36.8 ± 3.3 vs 31.8 ± 2.6 ms, p < 0.05). LDA scores were elevated in patients for relaxometric-based LDA (0.56 ± 0.28 vs 0.18 ± 0.13, p < 0.05) and timecourse-based LDA (0.97 ± 0.02 vs 0.02 ± 0.02, p < 0.05). The Fisher coefficient was greater for timecourse-based LDA (60.8) vs relaxometric-based LDA (1.6). Classification error rates were lower for timecourse-based LDA vs relaxometric-based LDA (12.6 ± 24.3 vs 22.5 ± 30.1%, p < 0.05). CONCLUSIONS These findings suggest that cMRF may be a valuable technique for the detection and characterization of CA. Analysis of cMRF signal timecourse data may improve tissue characterization as compared to analysis of native T1 and T2 alone.
Collapse
Affiliation(s)
- Brendan L Eck
- Imaging Institute, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, OH 44195, USA.
| | - Nicole Seiberlich
- Department of Radiology, Department of Biomedical Engineering, University of Michigan, 1150 West Medical Center Drive, Ann Arbor, MI 48109, USA
| | - Scott D Flamm
- Imaging Institute, Heart, Vascular, and Thoracic Institute, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, OH 44195, USA
| | - Jesse I Hamilton
- Department of Radiology, Department of Biomedical Engineering, University of Michigan, 1150 West Medical Center Drive, Ann Arbor, MI 48109, USA
| | - Abhilash Suresh
- Heart, Vascular, and Thoracic Institute, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, OH 44195, USA
| | - Yash Kumar
- Heart, Vascular, and Thoracic Institute, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, OH 44195, USA
| | - Mazen Hanna
- Heart, Vascular, and Thoracic Institute, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, OH 44195, USA
| | - Angel Houston
- Imaging Institute, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, OH 44195, USA
| | - Derrek Tew
- Imaging Institute, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, OH 44195, USA
| | - W H Wilson Tang
- Heart, Vascular, and Thoracic Institute, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, OH 44195, USA
| | - Deborah H Kwon
- Imaging Institute, Heart, Vascular, and Thoracic Institute, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, OH 44195, USA
| |
Collapse
|
5
|
Shpringer G, Bendahan D, Ben-Eliezer N. Accelerated reconstruction of dictionary-based T 2 relaxation maps based on dictionary compression and gradient descent search algorithms. Magn Reson Imaging 2021; 87:56-66. [PMID: 34973389 DOI: 10.1016/j.mri.2021.12.006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Revised: 11/19/2021] [Accepted: 12/22/2021] [Indexed: 11/18/2022]
Abstract
Background Quantitative T2-relaxation-based contrast maps have shown to be highly beneficial for clinical diagnosis and follow-up. The generation of quantitative maps, however, is impaired by long acquisition times, and time-consuming post-processing schemes. The EMC platform is a dictionary-based technique, which involves simulating theoretical signal curves for different physical and experimental values, followed by matching the experimentally acquired signals to the set simulated ones. Purpose Although the EMC technique has shown to produce accurate T2 maps, it involves computationally intensive post-processing procedures. In this work we present an approach for accelerating the reconstruction of T2 relaxation maps. Methods This work presents two alternative post-processing approaches for accelerating the reconstruction of EMC-based T2 relaxation maps. These are (a) Dictionary compression using principal component analysis (PCA) and (b) gradient-descent search algorithm. Additional acceleration was achieved by finding the optimal MATLAB C++ compiler. The utility of the two suggested approaches was examined by calculating the relative error, produced by each technique. Results Gradient descent method was in perfect agreement with the ground truth exhaustive search matching process. PCA based acceleration produced root mean square error (RMSE) of up to 4% compared to exhaustive matching process. Overall acceleration of x16 was achieved using gradient descent in addition to x7 acceleration by choosing the optimal MATLAB C++ compiler. Conclusions Postprocessing of EMC-based T2 relaxation maps can be accelerated without impairing the accuracy of the ensuing T2 values.
Collapse
Affiliation(s)
- Guy Shpringer
- Department of Biomedical Engineering, Tel Aviv University, Tel Aviv, Israel
| | - David Bendahan
- Aix Marseille University, CNRS UMR 7339, CRMBM, Marseille, France
| | - Noam Ben-Eliezer
- Department of Biomedical Engineering, Tel Aviv University, Tel Aviv, Israel; Sagol School of Neuroscience, Tel Aviv University, Tel Aviv, Israel; Center for Advanced Imaging Innovation and Research (CAI2R), New York University Langone Medical Center, New York, NY, USA.
| |
Collapse
|
6
|
Abdollah V, Parent EC, Su A, Wachowicz K, Battié MC. The effects of axial loading on the morphometric and T(2) characteristics of lumbar discs in relation to disc degeneration. Clin Biomech (Bristol, Avon) 2021; 83:105291. [PMID: 33596534 DOI: 10.1016/j.clinbiomech.2021.105291] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/07/2020] [Revised: 01/26/2021] [Accepted: 02/02/2021] [Indexed: 02/07/2023]
Abstract
BACKGROUND Intervertebral disc degeneration affects the morphology, biomechanics and biochemistry of the disc. The study aimed to compare the effects of compression and traction on lumbar discs measurements in relation to degeneration. METHODS Thirty-five volunteers (30 (SD 11) yrs.) with and without chronic back pain rested supine 15 min before an unloaded T2-mapping MRI, were then loaded 20 min with 50% body weight with imaging during the last 5 min, and then repeated this process under traction. For lumbar discs, height, angle, width, mean-T2, and T2-weighted centroid locations were calculated. A repeated measure ANCOVA and Cohen's d compared loading conditions. Relations between measurement changes between conditions and degeneration assessed by Pfirrmann ratings were examined graphically. FINDINGS From compression to traction, we observed significant: decrease in L1-2 mean-T2 (Effect size = -0.35); inferior and posterior shift in L4-5 (0.4, 0.14) and L5-S1 (0.25, 0.33) T2-weighted centroid. From unloaded to compression, we observed a significant: increase in L5-S1 width (Effect Size = 0.22); anterior shift in L1-2 T2-weighted centroid (0.39); and L3-4 (mean 2.1°) and L4-5 (1.8°) extension angle. More degeneration was graphically related with larger changes from Compression to Traction (more superior and, anterior position of the T2-weighted centroid, increased height, reduced extension of segmental angle) and from Unloaded to Compression larger changes in inferior displacement of the T2-weighted centroid, decrease in height) but less anterior displacement of the centroid and less change in segmental angles. INTERPRETATION The largest loading responses were at lower levels, generally with more degeneration. T2-weighted centroid locations, angle and disc height detected the largest loading response.
Collapse
|
7
|
Abdollah V, Parent EC, Su A, Wachowicz K, Battié MC. Could compression and traction loading improve the ability of magnetic resonance imaging to identify findings related to low back pain? Musculoskelet Sci Pract 2020; 50:102250. [PMID: 32947196 DOI: 10.1016/j.msksp.2020.102250] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/23/2020] [Revised: 08/22/2020] [Accepted: 08/26/2020] [Indexed: 12/30/2022]
Abstract
BACKGROUND Diagnostic imaging is routinely used to depict structural abnormalities in people with low back pain (LBP), but most findings are prevalent in people with and without LBP. It has been suggested that LBP is related to changes induced in the spine due to loading. Therefore, new imaging measurements are needed to improve our ability to identify structures relating to LBP. OBJECTIVES To investigate the response of the lumbar spine to compression and traction in participants with and without chronic LBP using MRI T2-mapping. METHOD Fifteen participants with chronic LBP were matched for age, weight, and gender with 15 healthy volunteers. All participants underwent MRI under three loading conditions maintained for 20 min each: resting supine, followed by compression and traction, both using 50% body weight. Participants were imaged in the last 5 min of each loading condition. Disc morphometric and fluid-based measurements from T2-maps were obtained. RESULTS Traditional MRI measurements (i.e. disc height, width and mean signal intensity) were not able to capture any differences in the changes measured in response to loading between individuals with and without pain. The location of the T2 weighted centroid (WC) was able to capture the difference between groups in response to compression in the horizontal (p < 0.01) and vertical direction (p < 0.01), and in response to traction in the vertical direction (p < 0.01). While the location of T2WC moved anteriorly (Effect Size (ES): 0.44) and inferiorly with compression in those with pain (ES: 0.34), it moved posteriorly (ES: -0.14) and superiorly (ES: -0.05) in the group without pain. In response to traction, the vertical location of T2WC moved superiorly in both groups but the change was larger in those with pain (ES Pain = -0.52; ES No Pain: -0.13). CONCLUSION The novel measurements of the location of the T2WC in the intervertebral discs were the only measurements capturing differences in response to loading between those with and without low back pain.
Collapse
Affiliation(s)
- Vahid Abdollah
- Department of Physical Therapy, Faculty of Rehabilitation Medicine, University of Alberta, 2-50 Corbett Hall, Edmonton, AB, CA T6G 2G4, Canada.
| | - Eric C Parent
- Department of Physical Therapy, Faculty of Rehabilitation Medicine, University of Alberta, 2-50 Corbett Hall, Edmonton, AB, CA T6G 2G4, Canada.
| | - Alex Su
- Department of Physical Therapy, Faculty of Rehabilitation Medicine, University of Alberta, 3-48 Corbett Hall, Edmonton, AB, CA T6G 2G4, Canada.
| | - Keith Wachowicz
- Department of Oncology, Medical Physics Division, 11560 University of Alberta, Edmonton, AB, CA T6G 1Z2, Canada; Department of Medical Physics, Cross Cancer Institute, 11560 University Avenue, Edmonton, AB, CA T6G 1Z2, Canada.
| | - Michele C Battié
- Department of Physical Therapy, Faculty of Rehabilitation Medicine, University of Alberta, 2-50 Corbett Hall, Edmonton, AB, CA T6G 2G4, Canada.
| |
Collapse
|
8
|
Fu Z, Mandava S, Keerthivasan MB, Li Z, Johnson K, Martin DR, Altbach MI, Bilgin A. A multi-scale residual network for accelerated radial MR parameter mapping. Magn Reson Imaging 2020; 73:152-162. [PMID: 32882339 DOI: 10.1016/j.mri.2020.08.013] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2020] [Revised: 07/17/2020] [Accepted: 08/20/2020] [Indexed: 01/04/2023]
Abstract
A deep learning MR parameter mapping framework which combines accelerated radial data acquisition with a multi-scale residual network (MS-ResNet) for image reconstruction is proposed. The proposed supervised learning strategy uses input image patches from multi-contrast images with radial undersampling artifacts and target image patches from artifact-free multi-contrast images. Subspace filtering is used during pre-processing to denoise input patches. For each anatomy and relaxation parameter, an individual network is trained. in vivo T1 mapping results are obtained on brain and abdomen datasets and in vivo T2 mapping results are obtained on brain and knee datasets. Quantitative results for the T2 mapping of the knee show that MS-ResNet trained using either fully sampled or undersampled data outperforms conventional model-based compressed sensing methods. This is significant because obtaining fully sampled training data is not possible in many applications. in vivo brain and abdomen results for T1 mapping and in vivo brain results for T2 mapping demonstrate that MS-ResNet yields contrast-weighted images and parameter maps that are comparable to those achieved by model-based iterative methods while offering two orders of magnitude reduction in reconstruction times. The proposed approach enables recovery of high-quality contrast-weighted images and parameter maps from highly accelerated radial data acquisitions. The rapid image reconstructions enabled by the proposed approach makes it a good candidate for routine clinical use.
Collapse
Affiliation(s)
- Zhiyang Fu
- Department of Electrical and Computer Engineering, University of Arizona, Tucson, AZ, USA; Department of Medical Imaging, University of Arizona, Tucson, AZ, USA
| | - Sagar Mandava
- Department of Electrical and Computer Engineering, University of Arizona, Tucson, AZ, USA; Department of Medical Imaging, University of Arizona, Tucson, AZ, USA
| | - Mahesh B Keerthivasan
- Department of Electrical and Computer Engineering, University of Arizona, Tucson, AZ, USA; Department of Medical Imaging, University of Arizona, Tucson, AZ, USA
| | - Zhitao Li
- Department of Electrical and Computer Engineering, University of Arizona, Tucson, AZ, USA; Department of Medical Imaging, University of Arizona, Tucson, AZ, USA
| | - Kevin Johnson
- Department of Medical Imaging, University of Arizona, Tucson, AZ, USA
| | - Diego R Martin
- Department of Medical Imaging, University of Arizona, Tucson, AZ, USA
| | - Maria I Altbach
- Department of Medical Imaging, University of Arizona, Tucson, AZ, USA; Department of Biomedical Engineering, University of Arizona, Tucson, AZ, USA
| | - Ali Bilgin
- Department of Electrical and Computer Engineering, University of Arizona, Tucson, AZ, USA; Department of Medical Imaging, University of Arizona, Tucson, AZ, USA; Department of Biomedical Engineering, University of Arizona, Tucson, AZ, USA.
| |
Collapse
|
9
|
Zi R, Zhu D, Qin Q. Quantitative T 2 mapping using accelerated 3D stack-of-spiral gradient echo readout. Magn Reson Imaging 2020; 73:138-47. [PMID: 32860871 DOI: 10.1016/j.mri.2020.08.007] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2020] [Accepted: 08/18/2020] [Indexed: 12/15/2022]
Abstract
PURPOSE To develop a rapid T2 mapping protocol using optimized spiral acquisition, accelerated reconstruction, and model fitting. MATERIALS AND METHODS A T2-prepared stack-of-spiral gradient echo (GRE) pulse sequence was applied. A model-based approach joined with compressed sensing was compared with the two methods applied separately for accelerated reconstruction and T2 mapping. A 2-parameter-weighted fitting method was compared with 2- or 3-parameter models for accurate T2 estimation under the influences of noise and B1 inhomogeneity. The performance was evaluated using both digital phantoms and healthy volunteers. Mitigating partial voluming with cerebrospinal fluid (CSF) was also tested. RESULTS Simulations demonstrates that the 2-parameter-weighted fitting approach was robust to a large range of B1 scales and SNR levels. With an in-plane acceleration factor of 5, the model-based compressed sensing-incorporated method yielded around 8% normalized errors compared to references. The T2 estimation with and without CSF nulling was consistent with literature values. CONCLUSION This work demonstrated the feasibility of a T2 quantification technique with 3D high-resolution and whole-brain coverage in 2-3 min. The proposed iterative reconstruction method, which utilized the model consistency, data consistency and spatial sparsity jointly, provided reasonable T2 estimation. The technique also allowed mitigation of CSF partial volume effect.
Collapse
|
10
|
Xu J, Duan AQ, Marini D, Lim JM, Keunen J, Portnoy S, Sled JG, McCrindle BW, Kingdom J, Macgowan CK, Seed M. The utility of MRI for measuring hematocrit in fetal anemia. Am J Obstet Gynecol 2020; 222:81.e1-81.e13. [PMID: 31306649 DOI: 10.1016/j.ajog.2019.07.016] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2019] [Revised: 07/08/2019] [Accepted: 07/09/2019] [Indexed: 12/19/2022]
Abstract
BACKGROUND Doppler ultrasound measurements of the peak systolic velocity of the middle cerebral artery can be used to noninvasively diagnose fetal anemia but are less precise following fetal blood transfusion and in late gestation. We have previously demonstrated the feasibility of estimating fetal hematocrit in vitro using magnetic resonance imaging relaxation times. Here we report the use of magnetic resonance imaging as a noninvasive tool to accurately detect fetal anemia in vivo. OBJECTIVES This study has 2 objectives: (1) to determine the feasibility and accuracy of magnetic resonance imaging in estimating hematocrit in anemic fetuses and (2) to compare magnetic resonance imaging and middle cerebral artery Doppler in detecting moderate to severe fetal anemia. STUDY DESIGN Fetuses undergoing fetal blood sampling or transfusion underwent magnetic resonance imaging examinations prior to and following their procedures at 1.5 Tesla (Siemens Avanto). A modified Look-Locker inversion pulse sequence and T2 preparation sequence were applied for T1 and T2 mapping of the intrahepatic umbilical vein. Estimated fetal hematocrit was calculated using a combination of T1 and T2 values and compared with conventional hematocrit obtained from fetal blood samples and middle cerebral artery Doppler measurements. RESULTS Twenty-three fetuses were assessed during 33 magnetic resonance imaging scans. The mean absolute difference between the laboratory and magnetic resonance imaging-estimated hematocrit was 0.06 ± 0.05 with a correlation of 0.77 (P < .001) determined by a multilevel, mixed-effects model adjusting for the repeated measurements from the same participants, multiple gestation pregnancies, and the scan type (ie, before or after transfusion scan). Bland-Altman analysis revealed a systematic bias of -0.03 between the magnetic resonance imaging and fetal blood sampling measurements. Magnetic resonance imaging and middle cerebral artery Doppler had similar sensitivities of approximately 90% to detect moderate to severe anemia. However, magnetic resonance imaging had a higher specificity (93% [13/14], 95% confidence interval, 66-100%) than Doppler (71% [10/14], 95% confidence interval, 42-92%). CONCLUSION Moderate to severe fetal anemia can be detected noninvasively by magnetic resonance imaging with high sensitivity and specificity. Our results suggest an adjunct role for magnetic resonance imaging in fetuses with suspected anemia, particularly following previous transfusion and in late gestation.
Collapse
|
11
|
Xiao D, Balcom BJ. Ultra-short echo time imaging with multiple echo refocusing for porous media T 2 mapping. J Magn Reson 2019; 299:33-41. [PMID: 30554042 DOI: 10.1016/j.jmr.2018.12.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2018] [Revised: 12/01/2018] [Accepted: 12/04/2018] [Indexed: 05/21/2023]
Abstract
T2 relaxation time measurement is a powerful tool to distinguish signal components in porous media. As T2 weighting is generally achieved by spin-echo based methods, it is very challenging to capture very short T2 relaxation time components, approximately 1 ms, with high resolution spatial encoding. It is especially challenging when T2 relaxation times of the other signal components are not known a priori. We propose a method, combining ultrashort echo time (UTE) imaging with multiple spin echo refocusing, to generate a series of images with T2 weighting. The T2 decay curves for each image voxel were extracted, and multiple T2 relaxation components were quantitatively evaluated. The method has been applied to a fast relaxation system, namely, moisture content in wood samples to differentiate cell wall (bound) water and cell cavity (lumen) water.
Collapse
Affiliation(s)
- Dan Xiao
- Department of Physics, University of Windsor, 401 Sunset Avenue, Windsor, ON N9B 3P4, Canada; MRI Research Center, Department of Physics, University of New Brunswick, 8 Bailey Drive, Fredericton, NB E3B 5A3, Canada.
| | - Bruce J Balcom
- MRI Research Center, Department of Physics, University of New Brunswick, 8 Bailey Drive, Fredericton, NB E3B 5A3, Canada.
| |
Collapse
|
12
|
Liu Y, Hamilton J, Rajagopalan S, Seiberlich N. Cardiac Magnetic Resonance Fingerprinting: Technical Overview and Initial Results. JACC Cardiovasc Imaging 2018; 11:1837-1853. [PMID: 30522686 PMCID: PMC6394856 DOI: 10.1016/j.jcmg.2018.08.028] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/02/2018] [Revised: 08/29/2018] [Accepted: 08/30/2018] [Indexed: 01/03/2023]
Abstract
Cardiovascular magnetic resonance is a versatile tool that enables noninvasive characterization of cardiac tissue structure and function. Parametric mapping techniques have allowed unparalleled differentiation of pathophysiological differences in the myocardium such as the delineation of myocardial fibrosis, hemorrhage, and edema. These methods are increasingly used as part of a tool kit to characterize disease states such as cardiomyopathies and coronary artery disease more accurately. Currently conventional mapping techniques require separate acquisitions for T1 and T2 mapping, the values of which may depend on specifics of the magnetic resonance imaging system hardware, pulse sequence implementation, and physiological variables including blood pressure and heart rate. The cardiac magnetic resonance fingerprinting (cMRF) technique has recently been introduced for simultaneous and reproducible measurement of T1 and T2 maps in a single scan. The potential for this technique to provide consistent tissue property values independent of variables including scanner, pulse sequence, and physiology could allow an unbiased framework for the assessment of intrinsic properties of cardiac tissue including structure, perfusion, and parameters such as extracellular volume without the administration of exogenous contrast agents. This review seeks to introduce the basics of the cMRF technique, including pulse sequence design, dictionary generation, and pattern matching. The potential applications of cMRF in assessing diseases such as nonischemic cardiomyopathy are also briefly discussed, and ongoing areas of research are described.
Collapse
Affiliation(s)
- Yuchi Liu
- Department of Biomedical Engineering, Case Western Reserve University, Cleveland, Ohio
| | - Jesse Hamilton
- Department of Biomedical Engineering, Case Western Reserve University, Cleveland, Ohio
| | - Sanjay Rajagopalan
- Department of Cardiovascular Medicine, University Hospitals, Harrington Heart and Vascular Institute, Cleveland Medical Center and Case Western Reserve School of Medicine, Cleveland, Ohio
| | - Nicole Seiberlich
- Department of Biomedical Engineering, Case Western Reserve University, Cleveland, Ohio; Department of Cardiovascular Medicine, University Hospitals, Harrington Heart and Vascular Institute, Cleveland Medical Center and Case Western Reserve School of Medicine, Cleveland, Ohio; Department of Radiology, Case Western Reserve University, Cleveland, Ohio.
| |
Collapse
|
13
|
Juras V, Schreiner M, Laurent D, Zbýň Š, Mlynarik V, Szomolanyi P, Hager B, Scotti C, Goldhahn J, Heule R, Bieri O, Trattnig S. The comparison of the performance of 3 T and 7 T T 2 mapping for untreated low-grade cartilage lesions. Magn Reson Imaging 2018; 55:86-92. [PMID: 30244140 DOI: 10.1016/j.mri.2018.09.021] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2018] [Revised: 09/17/2018] [Accepted: 09/18/2018] [Indexed: 11/17/2022]
Abstract
OBJECTIVE To investigate T2 mapping as a possible marker for low-grade human articular cartilage lesions during a one-year follow-up, possible changes during the follow-up and compare the reliability and sensitivity of these measurements on high-field (3 T) and ultra-high-field (7 T) MRI scanners. DESIGN Twenty-one patients with femoral, tibial and patellar cartilage defect in the knee joint participated in the study. The MRI protocol consisted of morphological, as well as three-dimensional triple-echo steady-state (3D-TESS) T2 mapping sequences with similar parameters at 3T and 7T. Patients were scanned at five time-points up to 12 months. T2 values were evaluated in the lesion and healthy-appearing regions for superficial and deep cartilage zone. The repeated ANOVA was used to determine differences in T2 values at various time points. RESULTS A significant decrease in T2 values was observed between baseline and six months in the superficial layer of the lesion in patients at 3 T (decrease from 41.89 ± 9.3 ms to 31.21 ± 7.2 ms, which is a difference of -5.67 ± 2.2 ms (p = 0.031)), and at 12 months in the superficial layer of the lesion in patients at 3 T (decrease from 41.89 ± 9.3 ms to 35.28 ± 4.9 ms, which is a difference of -6.60 ± 4.4 ms (p = 0.044). No significant differences were recorded at 7 T. CONCLUSION The change in T2 values acquired with 3 T 3D-TESS appears to be reflecting subtle changes of cartilage composition in the course of low-grade lesion development. 7 T T2 mapping does not reflect these changes probably due to completely decayed short T2 component.
Collapse
Affiliation(s)
- Vladimir Juras
- High-Field MR Centre, Department of Biomedical Imaging and Image-Guided Therapy, Medical University of Vienna, Vienna, Austria; Institute of Measurement Science, Slovak Academy of Sciences, Bratislava, Slovakia.
| | - Markus Schreiner
- High-Field MR Centre, Department of Biomedical Imaging and Image-Guided Therapy, Medical University of Vienna, Vienna, Austria; Department of Orthopaedics, Medical University of Vienna, Waehringer Guertel 18-20, A-1090 Vienna, Austria.
| | - Didier Laurent
- Novartis Institutes for Biomedical Research, Department of Translational Medicine, CH-4056 Basel, Switzerland.
| | - Štefan Zbýň
- High-Field MR Centre, Department of Biomedical Imaging and Image-Guided Therapy, Medical University of Vienna, Vienna, Austria; Center for Magnetic Resonance Research, Department of Radiology, University of Minnesota, Minneapolis, Minnesota, USA.
| | - Vladimir Mlynarik
- High-Field MR Centre, Department of Biomedical Imaging and Image-Guided Therapy, Medical University of Vienna, Vienna, Austria; Karl-Landsteiner Gesselschaft, St. Pölten, Austria.
| | - Pavol Szomolanyi
- High-Field MR Centre, Department of Biomedical Imaging and Image-Guided Therapy, Medical University of Vienna, Vienna, Austria; Institute of Measurement Science, Slovak Academy of Sciences, Bratislava, Slovakia.
| | - Benedikt Hager
- High-Field MR Centre, Department of Biomedical Imaging and Image-Guided Therapy, Medical University of Vienna, Vienna, Austria.
| | - Celeste Scotti
- Novartis Institutes for Biomedical Research, Department of Translational Medicine, CH-4056 Basel, Switzerland.
| | - Jörg Goldhahn
- ETH Zurich, Institute of Translational Medicine, Leopold-Ruzicka-Weg 4, CH-8093 Zurich, Switzerland.
| | - Rahel Heule
- High Field Magnetic Resonance, Max Planck Institute for Biological Cybernetics, Tübingen, Germany.
| | - Oliver Bieri
- Division of Radiological Physics, Department of Radiology, University of Basel Hospital, Basel, Switzerland.
| | - Siegfried Trattnig
- High-Field MR Centre, Department of Biomedical Imaging and Image-Guided Therapy, Medical University of Vienna, Vienna, Austria; Christian Doppler Laboratory for Clinical Molecular MR Imaging, Vienna, Austria; Austrian Cluster for Tissue Regeneration, Austria.
| |
Collapse
|
14
|
Leroi L, Coste A, de Rochefort L, Santin MD, Valabregue R, Mauconduit F, Giacomini E, Luong M, Chazel E, Valette J, Le Bihan D, Poupon C, Boumezbeur F, Rabrait-Lerman C, Vignaud A. Simultaneous multi-parametric mapping of total sodium concentration, T 1, T 2 and ADC at 7 T using a multi-contrast unbalanced SSFP. Magn Reson Imaging 2018; 53:156-163. [PMID: 30055291 DOI: 10.1016/j.mri.2018.07.012] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2018] [Revised: 07/23/2018] [Accepted: 07/23/2018] [Indexed: 01/10/2023]
Abstract
PURPOSE Quantifying multiple NMR properties of sodium could be of benefit to assess changes in cellular viability in biological tissues. A proof of concept of Quantitative Imaging using Configuration States (QuICS) based on a SSFP sequence with multiple contrasts was implemented to extract simultaneously 3D maps of applied flip angle (FA), total sodium concentration, T1, T2, and Apparent Diffusion Coefficient (ADC). METHODS A 3D Cartesian Gradient Recalled Echo (GRE) sequence was used to acquire 11 non-balanced SSFP contrasts at a 6 × 6 × 6 mm3 isotropic resolution with carefully-chosen gradient spoiling area, RF amplitude and phase cycling, with TR/TE = 20/3.2 ms and 25 averages, leading to a total acquisition time of 1 h 18 min. A least-squares fit between the measured and the analytical complex signals was performed to extract quantitative maps from a mono-exponential model. Multiple sodium phantoms with different compositions were studied to validate the ability of the method to measure sodium NMR properties in various conditions. RESULTS Flip angle maps were retrieved. Relaxation times, ADC and sodium concentrations were estimated with controlled precision below 15%, and were in accordance with measurements from established methods and literature. CONCLUSION The results illustrate the ability to retrieve sodium NMR properties maps, which is a first step toward the estimation of FA, T1, T2, concentration and ADC of 23Na for clinical research. With further optimization of the acquired QuICS contrasts, scan time could be reduced to be suitable with in vivo applications.
Collapse
Affiliation(s)
- Lisa Leroi
- NeuroSpin, CEA, DRF/JOLIOT, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Arthur Coste
- NeuroSpin, CEA, DRF/JOLIOT, Université Paris-Saclay, Gif-sur-Yvette, France
| | | | - Mathieu D Santin
- CENIR, Centre de NeuroImagerie de Recherche, Paris, France; ICM, Inserm U 1127, CNRS UMR 7225, Sorbonne Universités, UPMC Université Paris 06 UMR S1127, Institut du Cerveau et de la Moelle épinière, Paris, France
| | - Romain Valabregue
- CENIR, Centre de NeuroImagerie de Recherche, Paris, France; ICM, Inserm U 1127, CNRS UMR 7225, Sorbonne Universités, UPMC Université Paris 06 UMR S1127, Institut du Cerveau et de la Moelle épinière, Paris, France
| | | | - Eric Giacomini
- NeuroSpin, CEA, DRF/JOLIOT, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Michel Luong
- NeuroSpin, CEA, DRF/JOLIOT, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Edouard Chazel
- NeuroSpin, CEA, DRF/JOLIOT, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Julien Valette
- Commissariat à l'Energie Atomique et aux Energies Alternatives (CEA), Direction de la Recherche Fondamentale (DRF), Institut de Biologie François Jacob, MIRCen, Fontenay-aux-Roses, France
| | - Denis Le Bihan
- NeuroSpin, CEA, DRF/JOLIOT, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Cyril Poupon
- NeuroSpin, CEA, DRF/JOLIOT, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Fawzi Boumezbeur
- NeuroSpin, CEA, DRF/JOLIOT, Université Paris-Saclay, Gif-sur-Yvette, France
| | | | - Alexandre Vignaud
- NeuroSpin, CEA, DRF/JOLIOT, Université Paris-Saclay, Gif-sur-Yvette, France.
| |
Collapse
|
15
|
Lattanzi R, Zhang B, Knoll F, Assländer J, Cloos MA. Phase unwinding for dictionary compression with multiple channel transmission in magnetic resonance fingerprinting. Magn Reson Imaging 2017; 49:32-38. [PMID: 29278766 DOI: 10.1016/j.mri.2017.12.015] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2017] [Revised: 12/12/2017] [Accepted: 12/21/2017] [Indexed: 11/28/2022]
Abstract
PURPOSE Magnetic Resonance Fingerprinting reconstructions can become computationally intractable with multiple transmit channels, if the B1+ phases are included in the dictionary. We describe a general method that allows to omit the transmit phases. We show that this enables straightforward implementation of dictionary compression to further reduce the problem dimensionality. METHODS We merged the raw data of each RF source into a single k-space dataset, extracted the transceiver phases from the corresponding reconstructed images and used them to unwind the phase in each time frame. All phase-unwound time frames were combined in a single set before performing SVD-based compression. We conducted synthetic, phantom and in-vivo experiments to demonstrate the feasibility of SVD-based compression in the case of two-channel transmission. RESULTS Unwinding the phases before SVD-based compression yielded artifact-free parameter maps. For fully sampled acquisitions, parameters were accurate with as few as 6 compressed time frames. SVD-based compression performed well in-vivo with highly under-sampled acquisitions using 16 compressed time frames, which reduced reconstruction time from 750 to 25min. CONCLUSION Our method reduces the dimensions of the dictionary atoms and enables to implement any fingerprint compression strategy in the case of multiple transmit channels.
Collapse
Affiliation(s)
- Riccardo Lattanzi
- Center for Advanced Imaging Innovation and Research (CAI(2)R) and Bernard and Irene Schwartz Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, 660 1st Ave., New York, NY 10016, USA; The Sackler Institute at the New York University School of Medicine, 550 First Avenue, New York, NY 10016, USA.
| | - Bei Zhang
- Center for Advanced Imaging Innovation and Research (CAI(2)R) and Bernard and Irene Schwartz Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, 660 1st Ave., New York, NY 10016, USA
| | - Florian Knoll
- Center for Advanced Imaging Innovation and Research (CAI(2)R) and Bernard and Irene Schwartz Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, 660 1st Ave., New York, NY 10016, USA
| | - Jakob Assländer
- Center for Advanced Imaging Innovation and Research (CAI(2)R) and Bernard and Irene Schwartz Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, 660 1st Ave., New York, NY 10016, USA
| | - Martijn A Cloos
- Center for Advanced Imaging Innovation and Research (CAI(2)R) and Bernard and Irene Schwartz Center for Biomedical Imaging, Department of Radiology, New York University School of Medicine, 660 1st Ave., New York, NY 10016, USA
| |
Collapse
|
16
|
Xiao D, Balcom BJ. T 2 selective π Echo-Planar Imaging for porous media MRI. J Magn Reson 2017; 277:52-58. [PMID: 28232286 DOI: 10.1016/j.jmr.2017.02.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2016] [Revised: 02/04/2017] [Accepted: 02/06/2017] [Indexed: 06/06/2023]
Abstract
The π Echo Planar Imaging (PEPI) method has recently been modified to permit proton density imaging of fluids in porous media with moderate T2 and short T2∗ signal components. In many applications, it is desirable to discriminate multiple T2 components within each image voxel. T2 selective imaging is explored in this paper through adiabatic inversion as a magnetization preparation with PEPI readout. When prior information of the sample relaxation times is known, responses of different species to broadband adiabatic inversion pulses can be predicted by Bloch equation simulation. Different relaxation components can be acquired by combining the images with and without inversion preparation pulses. T2 weighting can be easily introduced in the PEPI sequence by shifting the spatial encoding gradients based on its spin echo nature. T2 decay curves can be extracted for each image voxel from a series of T2 weighted images and spatially resolved T2 distributions can be generated. This method is reliable but slow. The two methods were implemented to image porous media samples with PEPI the common basis of spatial resolution. The results of both methods agree remarkably well.
Collapse
Affiliation(s)
- Dan Xiao
- MRI Research Center, Department of Physics, University of New Brunswick, 8 Bailey Drive, Fredericton NB E3B 5A3, Canada.
| | - Bruce J Balcom
- MRI Research Center, Department of Physics, University of New Brunswick, 8 Bailey Drive, Fredericton NB E3B 5A3, Canada.
| |
Collapse
|
17
|
Chai JT, Biasiolli L, Li L, Alkhalil M, Galassi F, Darby C, Halliday AW, Hands L, Magee T, Perkins J, Sideso E, Handa A, Jezzard P, Robson MD, Choudhury RP. Quantification of Lipid-Rich Core in Carotid Atherosclerosis Using Magnetic Resonance T 2 Mapping: Relation to Clinical Presentation. JACC Cardiovasc Imaging 2017; 10:747-56. [PMID: 27743954 DOI: 10.1016/j.jcmg.2016.06.013] [Citation(s) in RCA: 52] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/12/2016] [Revised: 06/07/2016] [Accepted: 06/15/2016] [Indexed: 11/23/2022]
Abstract
Objectives The aim of this study was to: 1) provide tissue validation of quantitative T2 mapping to measure plaque lipid content; and 2) investigate whether this technique could discern differences in plaque characteristics between symptom-related and non–symptom-related carotid plaques. Background Noninvasive plaque lipid quantification is appealing both for stratification in treatment selection and as a possible predictor of future plaque rupture. However, current cardiovascular magnetic resonance (CMR) methods are insensitive, require a coalesced mass of lipid core, and rely on multicontrast acquisition with contrast media and extensive post-processing. Methods Patients scheduled for carotid endarterectomy were recruited for 3-T carotid CMR before surgery. Lipid area was derived from segmented T2 maps and compared directly to plaque lipid defined by histology. Results Lipid area (%) on T2 mapping and histology showed excellent correlation, both by individual slices (R = 0.85, p < 0.001) and plaque average (R = 0.83, p < 0.001). Lipid area (%) on T2 maps was significantly higher in symptomatic compared with asymptomatic plaques (31.5 ± 3.7% vs. 15.8 ± 3.1%; p = 0.005) despite similar degrees of carotid stenosis and only modest difference in plaque volume (128.0 ± 6.0 mm3 symptomatic vs. 105.6 ± 9.4 mm3 asymptomatic; p = 0.04). Receiver-operating characteristic analysis showed that T2 mapping has a good ability to discriminate between symptomatic and asymptomatic plaques with 67% sensitivity and 91% specificity (area under the curve: 0.79; p = 0.012). Conclusions CMR T2 mapping distinguishes different plaque components and accurately quantifies plaque lipid content noninvasively. Compared with asymptomatic plaques, greater lipid content was found in symptomatic plaques despite similar degree of luminal stenosis and only modest difference in plaque volumes. This new technique may find a role in determining optimum treatment (e.g., providing an indication for intensive lipid lowering or by informing decisions of stents vs. surgery).
Collapse
|
18
|
Cheng CC, Mei CS, Duryea J, Chung HW, Chao TC, Panych LP, Madore B. Dual-pathway multi-echo sequence for simultaneous frequency and T2 mapping. J Magn Reson 2016; 265:177-87. [PMID: 26923150 PMCID: PMC4818735 DOI: 10.1016/j.jmr.2016.01.019] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2015] [Revised: 01/21/2016] [Accepted: 01/22/2016] [Indexed: 06/05/2023]
Abstract
PURPOSE To present a dual-pathway multi-echo steady state sequence and reconstruction algorithm to capture T2, T2(∗) and field map information. METHODS Typically, pulse sequences based on spin echoes are needed for T2 mapping while gradient echoes are needed for field mapping, making it difficult to jointly acquire both types of information. A dual-pathway multi-echo pulse sequence is employed here to generate T2 and field maps from the same acquired data. The approach might be used, for example, to obtain both thermometry and tissue damage information during thermal therapies, or susceptibility and T2 information from a same head scan, or to generate bonus T2 maps during a knee scan. RESULTS Quantitative T2, T2(∗) and field maps were generated in gel phantoms, ex vivo bovine muscle, and twelve volunteers. T2 results were validated against a spin-echo reference standard: A linear regression based on ROI analysis in phantoms provided close agreement (slope/R(2)=0.99/0.998). A pixel-wise in vivo Bland-Altman analysis of R2=1/T2 showed a bias of 0.034 Hz (about 0.3%), as averaged over four volunteers. Ex vivo results, with and without motion, suggested that tissue damage detection based on T2 rather than temperature-dose measurements might prove more robust to motion. CONCLUSION T2, T2(∗) and field maps were obtained simultaneously, from the same datasets, in thermometry, susceptibility-weighted imaging and knee-imaging contexts.
Collapse
Affiliation(s)
- Cheng-Chieh Cheng
- Department of Radiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
| | | | - Jeffrey Duryea
- Department of Radiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
| | - Hsiao-Wen Chung
- Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, Taipei, Taiwan
| | - Tzu-Cheng Chao
- Department of Computer Science and Information Engineering, National Cheng-Kung University, Tainan, Taiwan
| | - Lawrence P Panych
- Department of Radiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
| | - Bruno Madore
- Department of Radiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA
| |
Collapse
|
19
|
Vashaee S, Newling B, Balcom BJ. Local T2 measurement employing longitudinal Hadamard encoding and adiabatic inversion pulses in porous media. J Magn Reson 2015; 261:141-148. [PMID: 26580063 DOI: 10.1016/j.jmr.2015.10.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2015] [Revised: 10/07/2015] [Accepted: 10/08/2015] [Indexed: 06/05/2023]
Abstract
Band selective adiabatic inversion radio frequency pulses were employed for multi-slice T2 distribution measurements in porous media samples. Multi-slice T2 measurement employing longitudinal Hadamard encoding has an inherent sensitivity advantage over slice-by-slice local T2 measurements. The slice selection process is rendered largely immune to B1 variation by employing hyperbolic secant adiabatic inversion pulses, which simultaneously invert spins in several well-defined slices. While Hadamard encoding is well established for local spectroscopy, the current work is the first use of Hadamard encoding for local T2 measurement.
Collapse
Affiliation(s)
- S Vashaee
- UNB MRI Centre, Department of Physics, University of New Brunswick, Fredericton, New Brunswick E3B 5A3, Canada.
| | - B Newling
- UNB MRI Centre, Department of Physics, University of New Brunswick, Fredericton, New Brunswick E3B 5A3, Canada.
| | - B J Balcom
- UNB MRI Centre, Department of Physics, University of New Brunswick, Fredericton, New Brunswick E3B 5A3, Canada.
| |
Collapse
|
20
|
Yamauchi FI, Penzkofer T, Fedorov A, Fennessy FM, Chu R, Maier SE, Tempany CMC, Mulkern RV, Panych LP. Prostate cancer discrimination in the peripheral zone with a reduced field-of-view T(2)-mapping MRI sequence. Magn Reson Imaging 2015; 33:525-30. [PMID: 25687187 DOI: 10.1016/j.mri.2015.02.006] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2014] [Revised: 01/15/2015] [Accepted: 02/08/2015] [Indexed: 10/24/2022]
Abstract
OBJECTIVES To evaluate the performance of T2 mapping in discriminating prostate cancer from normal prostate tissue in the peripheral zone using a practical reduced field-of-view MRI sequence requiring less than 3 minutes of scan time. MATERIALS AND METHODS Thirty-six patients with biopsy-proven peripheral zone prostate cancer without prior treatment underwent routine multiparametric MRI at 3.0T with an endorectal coil. An Inner-Volume Carr-Purcell-Meiboom-Gill imaging sequence that required 2.8 minutes to obtain data for quantitative T2 mapping covering the entire prostate gland was added to the routine multiparametric protocol. Suspected cancer (SC) and suspected healthy (SH) tissue in the peripheral zone were identified in consensus by three radiologists and were correlated with available biopsy results. Differences in mean T2 values in SC and SH regions-of-interest (ROIs) were tested for significance using unpaired Student's two-tailed t-test. The area under the receiver operating characteristic curve was used to assess the optimal threshold T2 value for cancer discrimination. RESULTS ROI analyses revealed significantly (p<0.0001) shorter T2 values in SC (85.4±12.3ms) compared to SH (169.6±38.7ms). An estimated T2 threshold of 99ms yielded a sensitivity of 92% and a specificity of 97% for prostate cancer discrimination. CONCLUSIONS Quantitative values derived from this clinically practical T2-mapping sequence allow high precision discrimination between healthy and cancerous peripheral zone in the prostate.
Collapse
Affiliation(s)
- Fernando I Yamauchi
- Department of Radiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA; Instituto de Radiologia do Hospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo, São Paulo, SP, Brazil
| | - Tobias Penzkofer
- Department of Radiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA; Department of Radiology, Charité Universitätsmedizin Berlin, Berlin, Germany
| | - Andriy Fedorov
- Department of Radiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA
| | - Fiona M Fennessy
- Department of Imaging, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA
| | - Renxin Chu
- Department of Radiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA
| | - Stephan E Maier
- Department of Radiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA; Department of Radiology, Sahlgrenska University Hospital, Gothenburg University, Gothenburg, Sweden
| | - Clare M C Tempany
- Department of Radiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA
| | - Robert V Mulkern
- Department of Radiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA; Department of Radiology, Children's Hospital Boston, Harvard Medical School, Boston, MA
| | - Lawrence P Panych
- Department of Radiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA.
| |
Collapse
|
21
|
Wang L, Regatte RR. Investigation of regional influence of magic-angle effect on t2 in human articular cartilage with osteoarthritis at 3 T. Acad Radiol 2015; 22:87-92. [PMID: 25481517 DOI: 10.1016/j.acra.2014.07.015] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2014] [Revised: 07/24/2014] [Accepted: 07/25/2014] [Indexed: 10/24/2022]
Abstract
RATIONALE AND OBJECTIVES The objectives of this research study were to determine the magic-angle effect on different subregions of in vivo human femoral cartilage through the quantitative assessment of the effect of static magnetic field orientation (B0) on transverse (T2) relaxation time at 3.0 T. MATERIALS AND METHODS Healthy volunteers (n = 5; mean age, 36.4 years) and clinical patients (n = 5; mean age, 64 years) with early osteoarthritis (OA) were scanned at 3.0-T magnetic resonance using an 8-channel phased-array knee coil (transmit-receive). RESULTS The T2 maps revealed significantly greater values in anterior than in posterior regions. When the cartilage regions were oriented at 55° to B0 (magic angle), the longest T2 values were detected in comparison with the neighboring regions oriented 90° and 180° (0°) to B0. The subregions oriented 180° (0°) to B0 showed the lowest T2 values. CONCLUSIONS The differences in T2 values of different subregions suggest that magic-angle effect needs to be considered when interpreting cartilage abnormalities in OA patients.
Collapse
|
22
|
Nechifor RE, Romanenko K, Marica F, Balcom BJ. Spatially resolved measurements of mean spin-spin relaxation time constants. J Magn Reson 2014; 239:16-22. [PMID: 24361482 DOI: 10.1016/j.jmr.2013.11.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2013] [Revised: 11/20/2013] [Accepted: 11/21/2013] [Indexed: 06/03/2023]
Abstract
Magnetic Resonance measurements of the T2 distribution have become very common and they are a powerful way to probe microporous fluid bearing solids. While the structure of the T2 distribution, and changes in the structure, are often very informative, it is common to reduce the T2 distribution to a mean numeric quantity in order to provide a quantitative interpretation of the distribution. Magnetic Resonance Imaging measurements of the T2 distribution have recently been introduced, but they are time consuming, especially for 2 and 3 spatial dimensions. In this paper we explore a direct MRI measurement of the arithmetic mean of 1/T2, characterizing the distribution by using the initial slope of the spatially resolved T2 decay in a CPMG prepared Centric Scan SPRITE experiment. The methodology is explored with a test phantom sample and realistic petroleum reservoir core plug samples. The arithmetic mean of 1/T2 is related to the harmonic mean of T2. The mean obtained from the early decay is explored through measurements of uniform saturated core plug samples and by comparison to other means determined from the complete T2 distribution. Complementary data were obtained using SE-SPI T2 distribution MRI measurements. The utility of the arithmetic mean 1/T2 is explored through measurements of centrifuged core plug samples where the T2 distribution varies spatially. The harmonic mean T2 obtained from the early decay was employed to estimate the irreducible water saturation for core plug samples.
Collapse
Affiliation(s)
- Ruben Emanuel Nechifor
- MRI Research Centre, Department of Physics, University of New Brunswick, 8 Bailey Drive, Fredericton, New Brunswick E3B 5A3, Canada
| | - Konstantin Romanenko
- MRI Research Centre, Department of Physics, University of New Brunswick, 8 Bailey Drive, Fredericton, New Brunswick E3B 5A3, Canada
| | - Florea Marica
- MRI Research Centre, Department of Physics, University of New Brunswick, 8 Bailey Drive, Fredericton, New Brunswick E3B 5A3, Canada
| | - Bruce J Balcom
- MRI Research Centre, Department of Physics, University of New Brunswick, 8 Bailey Drive, Fredericton, New Brunswick E3B 5A3, Canada.
| |
Collapse
|