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Gamon JA, Wang R, Russo SE. Contrasting photoprotective responses of forest trees revealed using PRI light responses sampled with airborne imaging spectrometry. New Phytol 2023; 238:1318-1332. [PMID: 36658464 DOI: 10.1111/nph.18754] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2022] [Accepted: 01/16/2023] [Indexed: 06/17/2023]
Abstract
The Photochemical Reflectance Index (PRI) provides an optical indicator of photosynthetic light-use efficiency, photoprotection, and stress in plants. Although PRI can be applied in remote sensing, its interpretation depends on irradiance, which is hard to obtain from satellite or airborne imagery. To quantify forest photoprotective responses remotely, we developed a framework for modeling and interpreting PRI-light responses of individual trees and species using airborne imaging spectrometry coupled with georeferenced forest inventory data from a temperate broad-leaved forest. We derived an irradiance proxy, used hierarchical modeling to analyze PRI-light responses, and developed a framework of physiological interpretations of model parameters as facultative and constitutive components of photoprotection. Photochemical Reflectance Index declined with illumination, and PRI-light relationships varied with landscape position and among tree crowns and species. More sun-exposed foliage had lower intercepts and slopes of the relationship, indicating greater constitutive, but less facultative, photoprotection. We show that tree photoprotective strategies can be quantified at multiple scales using airborne hyperspectral data in structurally complex forests. Our findings and approach have important implications for the remote sensing of forest stress by offering a new way to assess functional diversity through dynamic differences in photoprotection and photosynthetic downregulation and providing previsual indicators of forest stress.
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Affiliation(s)
- John A Gamon
- School of Natural Resources, University of Nebraska-Lincoln, Lincoln, NE, 68583-0961, USA
| | - Ran Wang
- School of Natural Resources, University of Nebraska-Lincoln, Lincoln, NE, 68583-0961, USA
| | - Sabrina E Russo
- School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE, 68588-0118, USA
- Center for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, 68588-0660, USA
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2
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Radpour R, Delaney JK, Kakoulli I. Acquisition of High Spectral Resolution Diffuse Reflectance Image Cubes (350-2500 nm) from Archaeological Wall Paintings and Other Immovable Heritage Using a Field-Deployable Spatial Scanning Reflectance Spectrometry Hyperspectral System. Sensors (Basel) 2022; 22:s22051915. [PMID: 35271062 PMCID: PMC8914818 DOI: 10.3390/s22051915] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/20/2021] [Revised: 02/11/2022] [Accepted: 02/22/2022] [Indexed: 02/04/2023]
Abstract
There is growing interest in bringing non-invasive laboratory-based analytical imaging tools to field sites to study wall paintings in order to collect molecular information on the macroscale. Analytical imaging tools, such as reflectance imaging spectrometry, have provided a wealth of information about artist materials and working methods, as well as painting conditions. Currently, scientific analyses of wall paintings have been limited to point-measurement techniques such as reflectance spectroscopy (near-ultraviolet, visible, near-infrared, and mid-infrared), X-ray fluorescence, and Raman spectroscopy. Macroscale data collection methods have been limited to multispectral imaging in reflectance and luminescence modes, which lacks sufficient spectral bands to allow for the mapping and identification of artist materials of interest. The development of laboratory-based reflectance and elemental imaging spectrometers and scanning systems has sparked interest in developing truly portable versions, which can be brought to field sites to study wall paintings where there is insufficient space or electrical power for laboratory instruments. This paper presents the design and testing of a simple hyperspectral system consisting of a 2D spatial spot scanning spectrometer, which provides high spectral resolution diffuse reflectance spectra from 350 to 2500 nm with high signal to noise and moderate spatial resolution (few mm). This spectral range at high spectral resolution was found to provide robust chemical specificity sufficient to identify and map many artists' materials, as well as the byproducts of weathering and conservation coatings across the surface of ancient and Byzantine Cypriot wall paintings. Here, we present a detailed description of the hyperspectral system, its performance, and examples of its use to study wall paintings from Roman tombs in Cyprus. The spectral/spatial image processing workflow to make maps of pigments and constituent painting materials is also discussed. This type of configurable hyperspectral system and the imaging processing workflow offer a new tool for the field study of wall paintings and other immovable heritage.
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Affiliation(s)
- Roxanne Radpour
- Scientific Research Department, National Gallery of Art, Washington, DC 20565, USA
- Materials Science and Engineering, University of California, Los Angeles, CA 90095, USA;
- Correspondence: (R.R.); (J.K.D.)
| | - John K. Delaney
- Scientific Research Department, National Gallery of Art, Washington, DC 20565, USA
- Correspondence: (R.R.); (J.K.D.)
| | - Ioanna Kakoulli
- Materials Science and Engineering, University of California, Los Angeles, CA 90095, USA;
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Giardino C, Bresciani M, Braga F, Fabbretto A, Ghirardi N, Pepe M, Gianinetto M, Colombo R, Cogliati S, Ghebrehiwot S, Laanen M, Peters S, Schroeder T, Concha JA, Brando VE. First Evaluation of PRISMA Level 1 Data for Water Applications. Sensors (Basel) 2020; 20:E4553. [PMID: 32823847 PMCID: PMC7471993 DOI: 10.3390/s20164553] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/11/2020] [Revised: 08/08/2020] [Accepted: 08/12/2020] [Indexed: 12/15/2022]
Abstract
This study presents a first assessment of the Top-Of-Atmosphere (TOA) radiances measured in the visible and near-infrared (VNIR) wavelengths from PRISMA (PRecursore IperSpettrale della Missione Applicativa), the new hyperspectral satellite sensor of the Italian Space Agency in orbit since March 2019. In particular, the radiometrically calibrated PRISMA Level 1 TOA radiances were compared to the TOA radiances simulated with a radiative transfer code, starting from in situ measurements of water reflectance. In situ data were obtained from a set of fixed position autonomous radiometers covering a wide range of water types, encompassing coastal and inland waters. A total of nine match-ups between PRISMA and in situ measurements distributed from July 2019 to June 2020 were analysed. Recognising the role of Sentinel-2 for inland and coastal waters applications, the TOA radiances measured from concurrent Sentinel-2 observations were added to the comparison. The results overall demonstrated that PRISMA VNIR sensor is providing TOA radiances with the same magnitude and shape of those in situ simulated (spectral angle difference, SA, between 0.80 and 3.39; root mean square difference, RMSD, between 0.98 and 4.76 [mW m-2 sr-1 nm-1]), with slightly larger differences at shorter wavelengths. The PRISMA TOA radiances were also found very similar to Sentinel-2 data (RMSD < 3.78 [mW m-2 sr-1 nm-1]), and encourage a synergic use of both sensors for aquatic applications. Further analyses with a higher number of match-ups between PRISMA, in situ and Sentinel-2 data are however recommended to fully characterize the on-orbit calibration of PRISMA for its exploitation in aquatic ecosystem mapping.
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Affiliation(s)
- Claudia Giardino
- Institute for Electromagnetic Sensing of the Environment, National Research Council of Italy (CNR-IREA), 20133 Milan, Italy; (M.B.); (A.F.); (N.G.); (M.P.); (M.G.)
| | - Mariano Bresciani
- Institute for Electromagnetic Sensing of the Environment, National Research Council of Italy (CNR-IREA), 20133 Milan, Italy; (M.B.); (A.F.); (N.G.); (M.P.); (M.G.)
| | - Federica Braga
- Institute of Marine Sciences—National Research Council (CNR-ISMAR), 30122 Venice, Italy;
| | - Alice Fabbretto
- Institute for Electromagnetic Sensing of the Environment, National Research Council of Italy (CNR-IREA), 20133 Milan, Italy; (M.B.); (A.F.); (N.G.); (M.P.); (M.G.)
- Department of Architecture, Built Environment and Construction Engineering, Politecnico di Milano, 20133 Milan, Italy
| | - Nicola Ghirardi
- Institute for Electromagnetic Sensing of the Environment, National Research Council of Italy (CNR-IREA), 20133 Milan, Italy; (M.B.); (A.F.); (N.G.); (M.P.); (M.G.)
| | - Monica Pepe
- Institute for Electromagnetic Sensing of the Environment, National Research Council of Italy (CNR-IREA), 20133 Milan, Italy; (M.B.); (A.F.); (N.G.); (M.P.); (M.G.)
| | - Marco Gianinetto
- Institute for Electromagnetic Sensing of the Environment, National Research Council of Italy (CNR-IREA), 20133 Milan, Italy; (M.B.); (A.F.); (N.G.); (M.P.); (M.G.)
- Department of Architecture, Built Environment and Construction Engineering, Politecnico di Milano, 20133 Milan, Italy
| | - Roberto Colombo
- Remote Sensing of Environmental Dynamics Laboratory, Department of Earth and Environmental Sciences (DISAT), University of Milano-Bicocca, 20126 Milano, Italy; (R.C.); (S.C.)
| | - Sergio Cogliati
- Remote Sensing of Environmental Dynamics Laboratory, Department of Earth and Environmental Sciences (DISAT), University of Milano-Bicocca, 20126 Milano, Italy; (R.C.); (S.C.)
| | - Semhar Ghebrehiwot
- Water Insight, 6709 PG Wageningen, The Netherlands; (S.G.); (M.L.); (S.P.)
| | - Marnix Laanen
- Water Insight, 6709 PG Wageningen, The Netherlands; (S.G.); (M.L.); (S.P.)
| | - Steef Peters
- Water Insight, 6709 PG Wageningen, The Netherlands; (S.G.); (M.L.); (S.P.)
| | | | - Javier A. Concha
- Institute of Marine Sciences, National Research Council of Italy (CNR-ISMAR), 00133 Rome, Italy; (J.A.C.); (V.E.B.)
| | - Vittorio E. Brando
- Institute of Marine Sciences, National Research Council of Italy (CNR-ISMAR), 00133 Rome, Italy; (J.A.C.); (V.E.B.)
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Alonso K, Bachmann M, Burch K, Carmona E, Cerra D, de Los Reyes R, Dietrich D, Heiden U, Hölderlin A, Ickes J, Knodt U, Krutz D, Lester H, Müller R, Pagnutti M, Reinartz P, Richter R, Ryan R, Sebastian I, Tegler M. Data Products, Quality and Validation of the DLR Earth Sensing Imaging Spectrometer (DESIS). Sensors (Basel) 2019; 19:E4471. [PMID: 31618940 PMCID: PMC6848940 DOI: 10.3390/s19204471] [Citation(s) in RCA: 51] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/23/2019] [Revised: 10/09/2019] [Accepted: 10/09/2019] [Indexed: 01/10/2023]
Abstract
Imaging spectrometry from aerial or spaceborne platforms, also known as hyperspectral remote sensing, provides dense sampled and fine structured spectral information for each image pixel, allowing the user to identify and characterize Earth surface materials such as minerals in rocks and soils, vegetation types and stress indicators, and water constituents. The recently launched DLR Earth Sensing Imaging Spectrometer (DESIS) installed on the International Space Station (ISS) closes the long-term gap of sparsely available spaceborne imaging spectrometry data and will be part of the upcoming fleet of such new instruments in orbit. DESIS measures in the spectral range from 400 and 1000 nm with a spectral sampling distance of 2.55 nm and a Full Width Half Maximum (FWHM) of about 3.5 nm. The ground sample distance is 30 m with 1024 pixels across track. In this article, a detailed review is given on the applicability of DESIS data based on the specifics of the instrument, the characteristics of the ISS orbit, and the methods applied to generate products. The various DESIS data products available for users are described with the focus on specific processing steps. The results of the data quality and product validation studies show that top-of-atmosphere radiance, geometrically corrected, and bottom-of-atmosphere reflectance products meet the mission requirements. The limitations of the DESIS data products are also subject to a critical examination.
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Affiliation(s)
- Kevin Alonso
- Remote Sensing Technology Institute, DLR, Oberpfaffenhofen, 82234 Weßling, Germany.
| | - Martin Bachmann
- German Remote Sensing Data Center, DLR, Oberpfaffenhofen, 82234 Weßling, Germany.
| | - Kara Burch
- Innovative Imaging and Research, Corp. (I2R), Building 1103, Suite 140C, Stennis Space Center, Hancock County, MS 39529, USA.
| | - Emiliano Carmona
- Remote Sensing Technology Institute, DLR, Oberpfaffenhofen, 82234 Weßling, Germany.
| | - Daniele Cerra
- Remote Sensing Technology Institute, DLR, Oberpfaffenhofen, 82234 Weßling, Germany.
| | - Raquel de Los Reyes
- Remote Sensing Technology Institute, DLR, Oberpfaffenhofen, 82234 Weßling, Germany.
| | - Daniele Dietrich
- German Remote Sensing Data Center, DLR, Oberpfaffenhofen, 82234 Weßling, Germany.
| | - Uta Heiden
- German Remote Sensing Data Center, DLR, Oberpfaffenhofen, 82234 Weßling, Germany.
| | | | - Jack Ickes
- Teledyne Brown Engineering (TBE), 300 Sparkman Drive, Huntsville, AL 35805, USA.
| | - Uwe Knodt
- Strategic services, DLR, Linder Höhe, 51147 Köln, Germany.
| | - David Krutz
- Institute of Optical Sensor Systems, DLR, Rutherfordstraße 2, 12489 Berlin, Germany.
| | - Heath Lester
- Teledyne Brown Engineering (TBE), 300 Sparkman Drive, Huntsville, AL 35805, USA.
| | - Rupert Müller
- Remote Sensing Technology Institute, DLR, Oberpfaffenhofen, 82234 Weßling, Germany.
| | - Mary Pagnutti
- Innovative Imaging and Research, Corp. (I2R), Building 1103, Suite 140C, Stennis Space Center, Hancock County, MS 39529, USA.
| | - Peter Reinartz
- Remote Sensing Technology Institute, DLR, Oberpfaffenhofen, 82234 Weßling, Germany.
| | - Rudolf Richter
- Remote Sensing Technology Institute, DLR, Oberpfaffenhofen, 82234 Weßling, Germany.
| | - Robert Ryan
- Innovative Imaging and Research, Corp. (I2R), Building 1103, Suite 140C, Stennis Space Center, Hancock County, MS 39529, USA.
| | - Ilse Sebastian
- Institute of Optical Sensor Systems, DLR, Rutherfordstraße 2, 12489 Berlin, Germany.
| | - Mirco Tegler
- German Remote Sensing Data Center, DLR, Oberpfaffenhofen, 82234 Weßling, Germany.
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Santos MJ, Khanna S, Hestir EL, Greenberg JA, Ustin SL. Measuring landscape-scale spread and persistence of an invaded submerged plant community from airborne remote sensing. Ecol Appl 2016; 26:1733-1744. [PMID: 27755689 DOI: 10.1890/15-0615] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2015] [Revised: 10/28/2015] [Accepted: 01/11/2016] [Indexed: 06/06/2023]
Abstract
Processes of spread and patterns of persistence of invasive species affect species and communities in the new environment. Predicting future rates of spread is of great interest for timely management decisions, but this depends on models that rely on understanding the processes of invasion and historic observations of spread and persistence. Unfortunately, the rates of spread and patterns of persistence are difficult to model or directly observe, especially when multiple rates of spread and diverse persistence patterns may be co-occurring over the geographic distribution of the invaded ecosystem. Remote sensing systematically acquires data over large areas at fine spatial and spectral resolutions over multiple time periods that can be used to quantify spread processes and persistence patterns. We used airborne imaging spectroscopy data acquired once a year for 5 years from 2004 to 2008 to map an invaded submerged aquatic vegetation (SAV) community across 2220 km2 of waterways in the Sacramento-San Joaquin River Delta, California, USA, and measured its spread rate and its persistence. Submerged aquatic vegetation covered 13-23 km2 of the waterways (6-11%) every year. Yearly new growth accounted for 40-60% of the SAV area, ~50% of which survived to following year. Spread rates were overall negative and persistence decreased with time. From this dataset, we were able to identify both radial and saltatorial spread of the invaded SAV in the entire extent of the Delta over time. With both decreasing spread rate and persistence, it is possible that over time the invasion of this SAV community could decrease its ecological impact. A landscape-scale approach allows measurements of all invasion fronts and the spatial anisotropies associated with spread processes and persistence patterns, without spatial interpolation, at locations both proximate and distant to the focus of invasion at multiple points in time.
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Affiliation(s)
- Maria J Santos
- Center for Spatial Technologies and Remote Sensing (CSTARS), Department of Land, Air and Water Resources, University of California, One Shields Avenue, Davis, California, 95616, USA.
- Department of Innovation, Environmental and Energy Sciences, Utrecht University, Heidelberglaan 2, P.O. Box 80115, 3508 TC Utrecht, The Netherlands.
| | - Shruti Khanna
- Center for Spatial Technologies and Remote Sensing (CSTARS), Department of Land, Air and Water Resources, University of California, One Shields Avenue, Davis, California, 95616, USA
| | - Erin L Hestir
- Center for Spatial Technologies and Remote Sensing (CSTARS), Department of Land, Air and Water Resources, University of California, One Shields Avenue, Davis, California, 95616, USA
- Department of Marine, Earth and Atmospheric Science, North Carolina State University, Raleigh, North Carolina, 27695, USA
| | - Jonathan A Greenberg
- Center for Spatial Technologies and Remote Sensing (CSTARS), Department of Land, Air and Water Resources, University of California, One Shields Avenue, Davis, California, 95616, USA
- Department of Geography, University of Illinois, Urbana-Champaign, Illinois, 61801, USA
| | - Susan L Ustin
- Center for Spatial Technologies and Remote Sensing (CSTARS), Department of Land, Air and Water Resources, University of California, One Shields Avenue, Davis, California, 95616, USA
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Hagen N, Kester RT, Gao L, Tkaczyk TS. Snapshot advantage: a review of the light collection improvement for parallel high-dimensional measurement systems. Opt Eng 2012; 51:111702. [PMID: 22791926 PMCID: PMC3393130 DOI: 10.1117/1.oe.51.11.111702] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
The snapshot advantage is a large increase in light collection efficiency available to high-dimensional measurement systems that avoid filtering and scanning. After discussing this advantage in the context of imaging spectrometry, where the greatest effort towards developing snapshot systems has been made, we describe the types of measurements where it is applicable. We then generalize it to the larger context of high-dimensional measurements, where the advantage increases geometrically with measurement dimensionality.
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Affiliation(s)
- Nathan Hagen
- Rice University, Bioengineering Department, 6500 Main Street, Houston, Texas 77005
| | - Robert T. Kester
- Rebellion Photonics Inc., 7547 South Freeway, Houston, Texas 77021
| | - Liang Gao
- Rice University, Bioengineering Department, 6500 Main Street, Houston, Texas 77005
| | - Tomasz S. Tkaczyk
- Rice University, Bioengineering Department, 6500 Main Street, Houston, Texas 77005
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