Nanostructure and dynamics of N-truncated copper amyloid-β peptides from advanced X-ray absorption fine structure

An X-ray absorption spectroscopy (XAS) electrochemical cell was used to collect high-quality XAS measurements of N-truncated Cu:amyloid-β (Cu:Aβ) samples under near-physiological conditions. N-truncated Cu:Aβ peptide complexes contribute to oxidative stress and neurotoxicity in Alzheimer's patients' brains. However, the redox properties of copper in different Aβ peptide sequences are inconsistent. Therefore, the geometry of binding sites for the copper binding in Aβ4-8/12/16 was determined using novel advanced extended X-ray absorption fine structure (EXAFS) analysis. This enables these peptides to perform redox cycles in a manner that might produce toxicity in human brains. Fluorescence XAS measurements were corrected for systematic errors including defective-pixel data, monochromator glitches and dispersion of pixel spectra. Experimental uncertainties at each data point were measured explicitly from the point-wise variance of corrected pixel measurements. The copper-binding environments of Aβ4-8/12/16 were precisely determined by fitting XAS measurements with propagated experimental uncertainties, advanced analysis and hypothesis testing, providing a mechanism to pursue many similarly complex questions in bioscience. The low-temperature XAS measurements here determine that CuII is bound to the first amino acids in the high-affinity amino-terminal copper and nickel (ATCUN) binding motif with an oxygen in a tetragonal pyramid geometry in the Aβ4-8/12/16 peptides. Room-temperature XAS electrochemical-cell measurements observe metal reduction in the Aβ4-16 peptide. Robust investigations of XAS provide structural details of CuII binding with a very different bis-His motif and a water oxygen in a quasi-tetrahedral geometry. Oxidized XAS measurements of Aβ4-12/16 imply that both CuII and CuIII are accommodated in an ATCUN-like binding site. Hypotheses for these CuI, CuII and CuIII geometries were proven and disproven using the novel data and statistical analysis including F tests. Structural parameters were determined with an accuracy some tenfold better than literature claims of past work. A new protocol was also developed using EXAFS data analysis for monitoring radiation damage. This gives a template for advanced analysis of complex biosystems.

The Aging Process of Cadmium in Paddy Soils under Intermittent Irrigation with Acid Water: A Short-Term Simulation Experiment

Cadmium (Cd)-contaminated paddy soils are a big concern. However, the effect of irrigation with acid water on the migration and transformation of Cd and the effect of alternating redox conditions caused by intermittent irrigation on Cd aging processes in different depths of paddy soils are unclear. This study revealed Cd fractionation and aging in a Cd-contaminated paddy soil under four irrigation periods with acid water and four drainage periods, by applying a soil columns experiment and a sequential extraction procedure. The results showed that the dynamic changes of soil pH, oxidation reduction potential (ORP), iron (Fe) oxides and dissolved organic carbon (DOC) throughout the intermittent irrigation affected the transformation of Cd fractions. After 32 days, the proportion of exchangeable Cd (F1) to the total Cd decreased with a reduction of 24.4% and 20.1% at the topsoil and the subsoil, respectively. The labile fractions of Cd decreased, and the more immobilizable fractions of Cd increased in the different depths of soils due to the aging process. Additionally, the redistribution of the Fe and Mn oxide-bound Cd (F3) and organic matter and secondary-sulfide-bound Cd (F4) occurred at different depths of soils during the incubation time. Overall, the bioaccessibility of Cd in the subsoil was higher than that in the topsoil, which was likely due to the leaching and accumulation of soluble Cd in the deep soil. In addition, the aging processes in different depths of soils were divided into three stages, which can be mainly described as the transformation of F1 into F3 and F4.

Functional Properties of the Mitochondrial Carrier System

The mitochondrial carrier system (MCS) transports small molecules between mitochondria and the cytoplasm. It is integral to the core mitochondrial function to regulate cellular chemistry by metabolism. The mammalian MCS comprises the transporters of the 53-member canonical SLC25A family and a lesser number of identified noncanonical transporters. The recent discovery and investigations of the mitochondrial pyruvate carrier (MPC) illustrate the diverse effects a single mitochondrial carrier may exert on cellular function. However, the transport selectivities of many carriers remain unknown, and most have not been functionally investigated in mammalian cells. The mechanisms coordinating their function as a unified system remain undefined. Increased accessibility to molecular genetic and metabolomic technologies now greatly enables investigation of the MCS. Continued investigation of the MCS may reveal how mitochondria encode complex regulatory information within chemical thermodynamic gradients. This understanding may enable precision modulation of cellular chemistry to counteract the dysmetabolism inherent in disease.